Citrus Sinensis ID: 010405
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJY7 | 620 | Pentatricopeptide repeat- | yes | no | 0.921 | 0.759 | 0.478 | 1e-138 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.964 | 0.763 | 0.455 | 1e-134 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.931 | 0.830 | 0.434 | 1e-126 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 1.0 | 0.692 | 0.401 | 1e-126 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.937 | 0.770 | 0.420 | 1e-122 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.982 | 0.642 | 0.401 | 1e-121 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.923 | 0.746 | 0.426 | 1e-119 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.986 | 0.636 | 0.390 | 1e-119 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.982 | 0.677 | 0.414 | 1e-118 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 1.0 | 0.745 | 0.390 | 1e-117 |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 326/472 (69%), Gaps = 1/472 (0%)
Query: 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
DV + NS+IN Y G LFD++P+ +DVSWNS++ G V+ G +D A +F +M
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208
Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
+++ +SW +ISG+ Q KEAL LF EMQ+ D+EP++ L + LSACAQLGAL+ G W
Sbjct: 209 EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 268
Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
++SY+ K I++DS+L LIDMYAKCG ++ A++VF + K V A+T+ I G A +GH
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328
Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
EA F M+ GI P+ I++ AVL+ACS+ G VE+G F+SM + +KP ++HY
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388
Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
C+VDLLGRAGLL+EA+ FI MP+KP+ VIWG LL ACR+H+N E+G+ IG +LI D
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448
Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
H GRY+ +NI+ K + A E R+ M+++ + + PGCS I L+G HEFLAGDRSH +
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 508
Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFD-IEEEEKETVIGYHSEKLALAFGLICTKPG 459
++I W + +K++ GY E ++ D ++++E+E ++ HSEKLA+ +GLI TKPG
Sbjct: 509 IEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPG 568
Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
++IRI+KN+R+C DCH KL+SK++KR I +RDR +HHF DG CSC +YW
Sbjct: 569 TIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/512 (45%), Positives = 345/512 (67%), Gaps = 19/512 (3%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEIL 59
+ +K F D FV ++L++ Y +CG ++DAR +F ++ + D+V M + R+GEI
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV---MTDRRKRDGEI- 208
Query: 60 EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
V WN ++ G +R G A +F++M +RS+VSW +ISG++ NG
Sbjct: 209 --------------VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
K+A+ +FREM+ D+ PN LVS+L A ++LG+L+ G W++ Y + I++D +L +A
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
LIDMY+KCG I+ A+ VF ++V +++ I G A++G + +A + F M+ G+ P
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
++YI +L+ACSH G VE+G YF M V G++P ++HY CMVDLLGR+GLL+EAE FI
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434
Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
+MP+KPD+VIW LLGACR+ N EMG+R+ N+L++ + G Y+ LSN+Y
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494
Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
E+R M+++ I++ PGCSLI++DGV+HEF+ D SH K +EI EI K++ G
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAG 554
Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
Y T V+ ++EEE+KE V+ YHSEK+A AFGLI T PG IRIVKN+RIC DCHS++K
Sbjct: 555 YRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIK 614
Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
L+SKV+KRKI++RDRK +HHF+DGSCSC++YW
Sbjct: 615 LISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/504 (43%), Positives = 328/504 (65%), Gaps = 28/504 (5%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D FV+ SL+ YS CG +R A+ VFD+S D+ +WNS++N Y + G I + KLFD+MP
Sbjct: 96 DPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMP 155
Query: 70 QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
+RN +SW+ ++ G V G +A +F +M Q +P EA
Sbjct: 156 ERNVISWSCLINGYVMCGKYKEALDLFREM----------------QLPKPNEAF----- 194
Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
+ PN + ++LSAC +LGAL+ G WV++YI K +++D +L ALIDMYAKCGS
Sbjct: 195 -----VRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGS 249
Query: 190 IDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVL 247
++ A +VF++ G KDV AY++ I LAM G + E F+LF M S I+P+S++++ +L
Sbjct: 250 LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309
Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
AC H G + +G YF M + GI P + HY CMVDL GR+GL++EAE+FIASMPM+PD
Sbjct: 310 GACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD 369
Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
+IWG+LL R+ + + + LIE D + G Y+LLSN+Y +T + + +R
Sbjct: 370 VLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHE 429
Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
M + I + PGCS +E++GVVHEF+ GD S ++++ IY +EI+++++ GY +T+ V
Sbjct: 430 MEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489
Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
+ D+ E++KE + YHSEKLA+AF L+ T+PG+ +RI+KN+RIC DCH MK++SK+F R
Sbjct: 490 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSR 549
Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
+I +RD +HHF DGSCSC ++W
Sbjct: 550 EIVVRDCNRFHHFRDGSCSCRDFW 573
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/583 (40%), Positives = 346/583 (59%), Gaps = 72/583 (12%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
M VK++ DVFV NSLI Y CG + A VF + DVVSWNSMING+V+ G +
Sbjct: 156 MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 215
Query: 61 GLKLFDKMP----------------------------------QRNDVS-----WNSILG 81
L+LF KM + N V+ N++L
Sbjct: 216 ALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLD 275
Query: 82 GLVRFGSVDDACRVF-------------------------------NQMPKRSLVSWVVL 110
+ GS++DA R+F N MP++ +V+W L
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 111 ISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
IS + QNG+P EAL +F E+Q +++ N LVS LSACAQ+GAL+ G W++SYI+K
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395
Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
I+++ + +ALI MY+KCG ++ + +VF+S +DV +++ I GLAM+G EA ++F
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455
Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
M+ + P+ +++ V ACSH G V++ FH M +GI PE HYAC+VD+LGR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515
Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
G LE+A FI +MP+ P +WG LLGAC++H N + + L+E + +DG ++LLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575
Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
NIY + K EN E+RK MR +K+ PGCS IE+DG++HEFL+GD +H ++++Y
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635
Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
E+++K+K+ GY E V+ IEEEE KE + HSEKLA+ +GLI T+ VIR++KN+
Sbjct: 636 EVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNL 695
Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
R+C DCHS KL+S+++ R+I +RDR +HHF +G CSC ++W
Sbjct: 696 RVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/511 (42%), Positives = 324/511 (63%), Gaps = 32/511 (6%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+V+ F DV+V+NSL+ Y+ CG + A +F + DVVSW SM+ GY + G +
Sbjct: 143 IVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENA 202
Query: 62 LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
++FD+MP RN +W+ ++I+G+A+N +
Sbjct: 203 REMFDEMPHRNLFTWS-------------------------------IMINGYAKNNCFE 231
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
+A+ LF M+ + N ++VS++S+CA LGAL++G Y Y+ K + ++ IL AL+
Sbjct: 232 KAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALV 291
Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
DM+ +CG I+ A+ VF + D +++S I GLA++GH+ +A F M S G P +
Sbjct: 292 DMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDV 351
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
++ AVLSACSH G VEKG + +M HGI+P L+HY C+VD+LGRAG L EAENFI
Sbjct: 352 TFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILK 411
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
M +KP+ I G LLGAC++++N E+ +R+GNMLI+ H G Y+LLSNIY + +
Sbjct: 412 MHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKI 471
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG-DRSHEKTQEIYQFWEEIVKKIKNYGY 420
E +R M+++ +K+ PG SLIE+DG +++F G D+ H + +I + WEEI+ KI+ GY
Sbjct: 472 ESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGY 531
Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
T FD++EEEKE+ I HSEKLA+A+G++ TKPG+ IRIVKN+R+C DCH+ KL
Sbjct: 532 KGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKL 591
Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
+S+V+ R++ +RDR +HHF +G CSC +YW
Sbjct: 592 ISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/533 (40%), Positives = 323/533 (60%), Gaps = 31/533 (5%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
DV N++I Y+ G++ +AR +FDES DV +W +M++GY++N + E +LFDKMP
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308
Query: 70 QRNDVSWNSILGGLVR-------------------------------FGSVDDACRVFNQ 98
+RN+VSWN++L G V+ G + +A +F++
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDK 368
Query: 99 MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
MPKR VSW +I+G++Q+G EAL LF +M+ N + S LS CA + AL+ G
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
++ + K + + AL+ MY KCGSI+ A +F KD+ ++ + I G + +
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
G A FE+MK +G+ PD + +AVLSACSH G V+KG YF++M +G+ P H
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548
Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
YACMVDLLGRAGLLE+A N + +MP +PD IWGTLLGA RVH N E+ + + + +
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608
Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
+ G Y+LLSN+Y + + + ++R MR + +K+ PG S IE+ H F GD H
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 668
Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
+ EI+ F EE+ ++K GY +T V+ D+EEEEKE ++ YHSE+LA+A+G++
Sbjct: 669 PEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSS 728
Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
G IR++KN+R+C DCH+A+K ++++ R I +RD +HHF+DGSCSC +YW
Sbjct: 729 GRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/474 (42%), Positives = 316/474 (66%), Gaps = 2/474 (0%)
Query: 40 LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
+D +++ Y + G+++ K+FD+MP+R+ VS +++ + G+V+ A +F+ M
Sbjct: 159 IDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM 218
Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLGALDYG 158
+R +VSW V+I G+AQ+G P +AL LF+++ + +P+ +V+ LSAC+Q+GAL+ G
Sbjct: 219 CERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG 278
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
W++ +++ I+L+ +C LIDMY+KCGS++ A+ VF+ KD+ A+ + I G AM+
Sbjct: 279 RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMH 338
Query: 219 GHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
G+S +A LF M+ G+ P I++I L AC+H G V +G F SM +GIKP+++
Sbjct: 339 GYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIE 398
Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
HY C+V LLGRAG L+ A I +M M D+V+W ++LG+C++H + +G+ I LI
Sbjct: 399 HYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGL 458
Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
+ + G Y+LLSNIY E +VR M+++ I + PG S IE++ VHEF AGDR
Sbjct: 459 NIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDRE 518
Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
H K++EIY +I ++IK++GY T +V+ D+EE EKE + HSE+LA+A+GLI TK
Sbjct: 519 HSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTK 578
Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
PGS ++I KN+R+CSDCH+ KL+SK+ RKI +RDR +HHF DGSCSC ++W
Sbjct: 579 PGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/541 (39%), Positives = 325/541 (60%), Gaps = 37/541 (6%)
Query: 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
+++D +V I YS CG+++ +F E D+V++N+MI+GY NGE L LF
Sbjct: 253 YSHD-YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 67 KM----------------P----------------QRNDVSWNSILGGLV----RFGSVD 90
++ P + N +S S+ L + ++
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIE 371
Query: 91 DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
A ++F++ P++SL SW +ISG+ QNG ++A++LFREMQ + PN + +LSACA
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACA 431
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
QLGAL G WV+ ++ + + ALI MYAKCGSI A ++F K+ + +
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491
Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
I G ++G EA +F M + GI+P ++++ VL ACSH G V++G F+SM +
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551
Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
G +P + HYACMVD+LGRAG L+ A FI +M ++P + +W TLLGACR+H++ + + +
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611
Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
L E D ++ G ++LLSNI+ A VR+T +KRK+ +APG +LIE+ H
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671
Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
F +GD+SH + +EIY+ E++ K++ GY ET + D+EEEE+E ++ HSE+LA+A
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731
Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
FGLI T+PG+ IRI+KN+R+C DCH+ KL+SK+ +R I +RD +HHF+DG CSC +Y
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791
Query: 511 W 511
W
Sbjct: 792 W 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/543 (41%), Positives = 327/543 (60%), Gaps = 41/543 (7%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
DV +LI+ Y+ G + +A+ +FDE DVVSWN+MI+GY G E L+LF M
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258
Query: 70 QRN---DVS-----------------------W-------------NSILGGLVRFGSVD 90
+ N D S W N+++ + G ++
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318
Query: 91 DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
AC +F ++P + ++SW LI G+ KEAL LF+EM PN ++S+L ACA
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378
Query: 151 QLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
LGA+D G W++ YI K K + S L +LIDMYAKCG I+ A QVF+S K +S++
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
+ IFG AM+G + +F+LF M+ GI PD I+++ +LSACSH G ++ G + F +M
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
+ + P+L+HY CM+DLLG +GL +EAE I M M+PD VIW +LL AC++H N E+G+
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
LI+ + + G Y+LLSNIY + + R + + +K+ PGCS IE+D VV
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618
Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
HEF+ GD+ H + +EIY EE+ ++ G+ +T V+ ++EEE KE + +HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678
Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
+AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I RDR +HHF DG CSC
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738
Query: 509 EYW 511
+YW
Sbjct: 739 DYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/550 (39%), Positives = 319/550 (58%), Gaps = 39/550 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+VVK F +DV SL+ YS GR+ DA +FDE D VV+W ++ +GY +G E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195
Query: 61 GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
+ LF KM Q+N +++
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255
Query: 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
+ G ++ A VF+ M ++ +V+W +I G+A N PKE + LF +M +L+P+
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
+V LS+CA LGALD G W S I + + + ALIDMYAKCG++ +VF
Sbjct: 316 IVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
+KD+ +AI GLA NGH +F +F + GISPD +++ +L C H G ++ G
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435
Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
+F+++ V+ +K ++HY CMVDL GRAG+L++A I MPM+P+ ++WG LL CR+
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495
Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
++ ++ + + LI + + G Y+ LSNIY + + A EVR M K+ +K+ PG S
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSW 555
Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
IEL+G VHEFLA D+SH + +IY E++ +++ G+ T V FD+EEEEKE V+G
Sbjct: 556 IELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLG 615
Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
YHSEKLA+A GLI T G VIR+VKN+R+C DCH MKL+SK+ +R+I +RD +H F
Sbjct: 616 YHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFT 675
Query: 502 DGSCSCLEYW 511
+GSCSC +YW
Sbjct: 676 NGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | ||||||
| 225444752 | 596 | PREDICTED: pentatricopeptide repeat-cont | 0.939 | 0.805 | 0.694 | 0.0 | |
| 449526834 | 666 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.764 | 0.462 | 1e-146 | |
| 449435966 | 666 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.764 | 0.460 | 1e-145 | |
| 359484088 | 762 | PREDICTED: pentatricopeptide repeat-cont | 0.986 | 0.661 | 0.489 | 1e-141 | |
| 225450565 | 672 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.754 | 0.465 | 1e-141 | |
| 147775281 | 673 | hypothetical protein VITISV_030555 [Viti | 0.992 | 0.753 | 0.465 | 1e-141 | |
| 224134923 | 635 | predicted protein [Populus trichocarpa] | 0.970 | 0.781 | 0.466 | 1e-139 | |
| 225456890 | 698 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.732 | 0.458 | 1e-139 | |
| 225447043 | 640 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.748 | 0.445 | 1e-138 | |
| 224114351 | 660 | predicted protein [Populus trichocarpa] | 0.996 | 0.771 | 0.440 | 1e-136 |
| >gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/511 (69%), Positives = 422/511 (82%), Gaps = 31/511 (6%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
MV+KNSF DVFV+NS+I+FYSVCGR+ DARWVFDES +LDV
Sbjct: 117 MVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDV------------------ 158
Query: 61 GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
VSWNS++ G +R G++ +A +F++M +R+ +SW ++ISG+AQNG+P
Sbjct: 159 -------------VSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQP 205
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
KEALALFREMQ LD EPNSAILVS+LSAC+QLGALD+G WV+ YI KKC+++DSIL AAL
Sbjct: 206 KEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAAL 265
Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
IDMYAKCGSIDLAMQ F + +DVSAYT+AI GLAMNG S EA +LFE MK +GISPD
Sbjct: 266 IDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDG 325
Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
+SYIAVL ACSH GWVEKGF+YF SM DVHGI+PELDHYACMVDLLGRAGLLEEAE F+A
Sbjct: 326 VSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVA 385
Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
SMP+KPDNVIWG LLGACRV+ NAEMGQR+G++L+ESDQNHDGRYILLSNIY E++KGE+
Sbjct: 386 SMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGED 445
Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
AE+VRKTMR+RK+ R PGCSLIE+ G VHEF +GDRSHEKT+EIY WEEIVK+IK +GY
Sbjct: 446 AEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGY 505
Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
ETR+V+FD+EEEEKE VIG+HSEKLA+AFG + TK GS +RIVKNIRICSDCH A+KL
Sbjct: 506 REETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKL 565
Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
VSKVFKRKI+IRDRK +HHFE+G CSC +YW
Sbjct: 566 VSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 236/510 (46%), Positives = 362/510 (70%), Gaps = 1/510 (0%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
VVK+ DV +K++ IQ Y+ GR+ DAR +F S + DVV WN+MI+GY++ G +
Sbjct: 158 VVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAA 216
Query: 62 LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
LF +MP +N SWN ++ GL + G++ DA ++F++M +R +SW ++ G+ GR K
Sbjct: 217 KGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYK 276
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
EAL +F++MQ + P IL S+L+AC+ +GA+D G WV++Y+++ IKLD++L AL+
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336
Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
DMYAKCG +D+ +VF ++++ + + I GLA++G + +A ELF ++ + P+ I
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
+ + VL+AC+H G+V+KG F +M + +G+ PEL+HY CMVDLLGR+GL EAE+ I S
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
MPMKP+ +WG LLGACR+H N ++ +R+G +L+E + + GRY+LLSNIY + + ++
Sbjct: 457 MPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDV 516
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
++RK M+ R IK PG S+++L+G VHEF GD SH + +EIY+ + I ++++ G++
Sbjct: 517 SKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHS 576
Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
+T V+FDI+EEEKET + YHSEKLA+AFGLI T PG I IVKN+R+C DCHSA KL+
Sbjct: 577 PDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLI 636
Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
S++F R+I +RDR YHHF++G+CSC ++W
Sbjct: 637 SQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 235/510 (46%), Positives = 361/510 (70%), Gaps = 1/510 (0%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
VVK+ DV +K++ I Y+ GR+ DAR +F S + DVV WN+MI+GY++ G +
Sbjct: 158 VVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAA 216
Query: 62 LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
LF +MP +N SWN ++ GL + G++ DA ++F++M +R +SW ++ G+ GR K
Sbjct: 217 KGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYK 276
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
EAL +F++MQ + P IL S+L+AC+ +GA+D G WV++Y+++ IKLD++L AL+
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336
Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
DMYAKCG +D+ +VF ++++ + + I GLA++G + +A ELF ++ + P+ I
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
+ + VL+AC+H G+V+KG F +M + +G+ PEL+HY CMVDLLGR+GL EAE+ I S
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
MPMKP+ +WG LLGACR+H N ++ +R+G +L+E + + GRY+LLSNIY + + ++
Sbjct: 457 MPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDV 516
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
++RK M+ R IK PG S+++L+G VHEF GD SH + +EIY+ + I ++++ G++
Sbjct: 517 SKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHS 576
Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
+T V+FDI+EEEKET + YHSEKLA+AFGLI T PG I IVKN+R+C DCHSA KL+
Sbjct: 577 PDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLI 636
Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
S++F R+I +RDR YHHF++G+CSC ++W
Sbjct: 637 SQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/505 (48%), Positives = 351/505 (69%), Gaps = 1/505 (0%)
Query: 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
A DV N++I Y + AR VFD DV+SWN+MINGY G+I E +LFD+
Sbjct: 258 ARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDE 317
Query: 68 MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
MP+RN VSWNS+L G V+ G+V+DA +F++MP R +VSW +++ +AQ G+P EALALF
Sbjct: 318 MPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 377
Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
+M+++ ++P A +VSLLSACA LGALD G +++YI I+++SI+ AL+DMYAKC
Sbjct: 378 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 437
Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
G I LA QVF++ KDV A+ + I G+A++G+ EA +LF+ MK G+ P+ I+++A+L
Sbjct: 438 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 497
Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
SACSH G V++G M +GI+P+++HY C++DLL RAG LEEA I +MPM+P+
Sbjct: 498 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPN 557
Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
G LLG CR+H N E+G+ +G LI H GRYILLSNIY K ++A +VR
Sbjct: 558 PSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNL 617
Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGYNVETRS 426
M+ I + PG S+IEL G+VH F+AGD SH ++ +IY+ EI ++K+ GY+ +T +
Sbjct: 618 MKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGN 677
Query: 427 VMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
V+ D+EEE+KE + HSEKLA+A+GL+ IRIVKN+R+C DCH +KL+SKV+
Sbjct: 678 VLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYG 737
Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
R+I +RDR +HHFEDG CSCL++W
Sbjct: 738 REIIVRDRNRFHHFEDGECSCLDFW 762
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/513 (46%), Positives = 356/513 (69%), Gaps = 6/513 (1%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
+VK+ D + +S I+ Y+ GR+ +AR + D+ ++D V WN+MI+GY+R GE+
Sbjct: 163 LVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEA 222
Query: 61 GLKLFDKMPQRNDVS-WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
+LF+ MP R+ +S WN+++ G R G V+ A F++M +R +SW +I G+ Q G
Sbjct: 223 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 282
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
EAL +F +MQ + P +L S+LSACA LGALD G W+++Y ++ I+LD +L +
Sbjct: 283 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 342
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
L+DMYAKCG IDLA +VF +K+VS++ + I GLAM+G + +A +LF M I+P+
Sbjct: 343 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPN 399
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
I+++ VL+AC+H G V+KG F+SM +G++P+++HY C+VDLLGRAGLL EAE +
Sbjct: 400 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 459
Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
+S+P +P +WG LLGACR H N E+G+R+G +L+E + + GRY LLSNIY + + E
Sbjct: 460 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 519
Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELD-GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
EVRK M++R IK PG S+I+L G VH+F+ GD SH + ++IYQ +++ ++++
Sbjct: 520 EVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQME 579
Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
GY + V+FDI+EEEKET + HSEKLA+ FGLI T PG+ IRIVKN+R+C DCHSA
Sbjct: 580 GYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 639
Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
KL+S+V+ R+I +RDR YHHF +G+CSC ++W
Sbjct: 640 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/513 (46%), Positives = 355/513 (69%), Gaps = 6/513 (1%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
+VK+ D + +S I+ Y+ GR+ +AR + D+ ++D V WN+MI+GY+R GE+
Sbjct: 164 LVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEA 223
Query: 61 GLKLFDKMPQRNDVS-WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
+LF+ MP R+ +S WN+++ G R G V+ A F++M +R +SW +I G+ Q G
Sbjct: 224 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 283
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
EAL +F +MQ + P +L S+LSACA LGALD G W+++Y ++ I+LD +L +
Sbjct: 284 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 343
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
L+DMYAKCG IDLA +VF +K+VS++ + I GLAM+G + +A +LF M I P+
Sbjct: 344 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPN 400
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
I+++ VL+AC+H G V+KG F+SM +G++P+++HY C+VDLLGRAGLL EAE +
Sbjct: 401 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 460
Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
+S+P +P +WG LLGACR H N E+G+R+G +L+E + + GRY LLSNIY + + E
Sbjct: 461 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 520
Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELD-GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
EVRK M++R IK PG S+I+L G VH+F+ GD SH + ++IYQ +++ ++++
Sbjct: 521 EVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQME 580
Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
GY + V+FDI+EEEKET + HSEKLA+ FGLI T PG+ IRIVKN+R+C DCHSA
Sbjct: 581 GYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 640
Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
KL+S+V+ R+I +RDR YHHF +G+CSC ++W
Sbjct: 641 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa] gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/510 (46%), Positives = 340/510 (66%), Gaps = 14/510 (2%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
VVK +VF N+LI YS+CG + AR +FD S DVV+WN+MI+GY R
Sbjct: 140 VVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNR------- 192
Query: 62 LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
+++ +SW +I+ G V G VD A + F++MP+R VSW +I G+ + K
Sbjct: 193 -------IKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYK 245
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
EAL LFREMQ+ ++P+ +VS+L+ACAQLGAL+ G W+ +YI K +K D+ + ALI
Sbjct: 246 EALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALI 305
Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
DMY KCG++++A+ +F++ +D +T+ + GLA+NG EA +F M ++PD +
Sbjct: 306 DMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEV 365
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
+Y+ VLSAC+H G V++G +F SM HGI+P + HY CMVDLLG+AG L+EA I +
Sbjct: 366 TYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKN 425
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
MPMKP++++WG LLGACR+H++AEM +R ++E + N+ Y+L NIY K +
Sbjct: 426 MPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKL 485
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
E+R+ M R IK+ PGCSLIE++G+VHEF+AGD+SH +T+EIY ++ +K GY+
Sbjct: 486 RELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYS 545
Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
T V DI EE+KE + HSEKLA+AFGLI + PG IRIVKN+R+C DCH KLV
Sbjct: 546 PNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLV 605
Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
SKV+ R++ +RDR +HHF GSCSC +YW
Sbjct: 606 SKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/550 (45%), Positives = 355/550 (64%), Gaps = 39/550 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+++K F FVKN+LI Y+ CG V AR VFDE + +V +WNSM GY ++G E
Sbjct: 149 LIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEE 208
Query: 61 GLKLFDKMPQRN----DVSWNSILGGLVRF------------------------------ 86
+KLF +M + + +V+ S+L R
Sbjct: 209 VVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVD 268
Query: 87 -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
G VD A R+F+QM +R +V+W +ISG++Q R +EAL LF EMQ +++PN
Sbjct: 269 MYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT 328
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
+VS+LS+CA LGAL+ G WV+ +I+KK +KL L AL+D YAKCGS++ +++VF
Sbjct: 329 MVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
K+V ++T I GLA NG +A E F M K + P+ +++I VLSACSH G V++G
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448
Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
F SM GI+P ++HY CMVD+LGRAGL+EEA FI +MP++P+ VIW TLL +C+VH
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508
Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
+N E+G+ LI + H G YILLSNIY + E+A +VR M+++ IK+ PGCSL
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSL 568
Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
IELDGV+HEF A D H +++EIY E+++K+IK+ GY T D EE++KE+ +
Sbjct: 569 IELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVS 628
Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
+HSEKLA+AFGLI + PG+ IRI KN+R+C+DCH+A KLVSKVF R+I +RDR +HHF+
Sbjct: 629 HHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFK 688
Query: 502 DGSCSCLEYW 511
+GSCSC +YW
Sbjct: 689 EGSCSCNDYW 698
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 227/510 (44%), Positives = 338/510 (66%), Gaps = 31/510 (6%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
V K ++ +V V N L+Q Y+ CG + A VFD
Sbjct: 162 VFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFD-------------------------- 195
Query: 62 LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
+ P+ + SWN ++GG ++ G A R+F MP R +VSW V+I+G+ Q R K
Sbjct: 196 -----RTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFK 250
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
E L LF++M +EPN ++LV+ LSACA LGA++ G W+ Y+++K ++L L ALI
Sbjct: 251 EGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALI 310
Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
DMY+KCGS++ A++VFH +K+V A+++ I GLA+NG +A LF M+ +G+ P+ +
Sbjct: 311 DMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEV 370
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
++I +L+ACSH V++G +FHSM ++G+KP H+ CMVDL GRAG+L++A+ I S
Sbjct: 371 TFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKS 430
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
MP KP++ IWG LL ACR+H + E+G+++G L+E D NH GRY+LLSNIY + +
Sbjct: 431 MPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRV 490
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
E+R+ MR+R++ + PGCS I+L +HEF+AGD SH + + IY E+ +++K GY
Sbjct: 491 AELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYK 550
Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
+T V+ D++EEEKET + +HSEKLA+AFGLI T PG+ IRI KN+R+C+DCHSA KL+
Sbjct: 551 PDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLI 610
Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
SK++ R+I +RDR +HHF DGSCSC+++W
Sbjct: 611 SKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa] gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/549 (44%), Positives = 353/549 (64%), Gaps = 40/549 (7%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
K FA D + +N+L+ YS CG + AR VFD+ +D VVSW +MI + + + E +
Sbjct: 112 TKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAV 171
Query: 63 KLFDKMPQR-----NDVSWNSILGGLVR------------------FGS--------VDD 91
+LFD+M + N+V+ ++L R FG +D
Sbjct: 172 RLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDV 231
Query: 92 ACR---------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
C+ +F++ +++L SW ++I+G ++ +EAL LFREMQ+ ++ + +
Sbjct: 232 YCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTM 291
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
SLL AC LGAL+ G W+++YI+K+ I +D L AL+DMYAKCGSI+ A+QVFH +
Sbjct: 292 ASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPE 351
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
KDV +T+ I GLAM G + A + F+ M KG+ PD+I+++ VL+ACSH G+V++G +
Sbjct: 352 KDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISH 411
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
F+SM D +GI+P ++HY +VD+LGRAG + EAE I SMPM PD + G LLGACR+H
Sbjct: 412 FNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHG 471
Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
N E +R L+E D H G Y+LLSNIY + K E A+ R+ M +R +++ PGCS I
Sbjct: 472 NLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQI 531
Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
E+ GVVHEF+ GD SH ++ EI + E+++ K+KN GY + V+FD+ EEEKET +
Sbjct: 532 EVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSL 591
Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
HSEKLA+AFGL+ T G+ IR+VKN+RICSDCHSA KL+SK++ R+I +RDR +HHF+D
Sbjct: 592 HSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKD 651
Query: 503 GSCSCLEYW 511
G+CSC +W
Sbjct: 652 GTCSCRGFW 660
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | ||||||
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.921 | 0.759 | 0.457 | 2.2e-121 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.857 | 0.678 | 0.463 | 2.9e-112 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.925 | 0.825 | 0.422 | 2.3e-110 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.970 | 0.672 | 0.396 | 2.6e-109 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.996 | 0.791 | 0.409 | 3e-108 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.921 | 0.757 | 0.423 | 6.3e-108 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.980 | 0.641 | 0.397 | 9.5e-105 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.908 | 0.734 | 0.414 | 9.5e-105 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.908 | 0.758 | 0.409 | 1.6e-104 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.980 | 0.842 | 0.403 | 7.7e-103 |
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 216/472 (45%), Positives = 314/472 (66%)
Query: 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
DV + NS+IN Y G LFD++P+ +DVSWNS++ G V+ G +D A +F +M
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208
Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
+++ +SW +ISG+ Q KEAL LF EMQ+ D+EP++ L + LSACAQLGAL+ G W
Sbjct: 209 EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 268
Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
++SY+ K I++DS+L LIDMYAKCG ++ A++VF + K V A+T+ I G A +GH
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328
Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
EA F M+ GI P+ I++ AVL+ACS+ G VE+G F+SM + +KP ++HY
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388
Query: 281 CMVDXXXXXXXXXXXXNFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
C+VD FI MP+KP+ VIWG LL ACR+H+N E+G+ IG +LI D
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448
Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
H GRY+ +NI+ K + A E R+ M+++ + + PGCS I L+G HEFLAGDRSH +
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 508
Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFD-IEEEEKETVIGYHSEKLALAFGLICTKPG 459
++I W + +K++ GY E ++ D ++++E+E ++ HSEKLA+ +GLI TKPG
Sbjct: 509 IEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPG 568
Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
++IRI+KN+R+C DCH KL+SK++KR I +RDR +HHF DG CSC +YW
Sbjct: 569 TIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
Identities = 203/438 (46%), Positives = 297/438 (67%)
Query: 74 VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
V WN ++ G +R G A +F++M +RS+VSW +ISG++ NG K+A+ +FREM+
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG 268
Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
D+ PN LVS+L A ++LG+L+ G W++ Y + I++D +L +ALIDMY+KCG I+ A
Sbjct: 269 DIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
+ VF ++V +++ I G A++G + +A + F M+ G+ P ++YI +L+ACSH
Sbjct: 329 IHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388
Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDXXXXXXXXXXXXNFIASMPMKPDNVIWGT 313
G VE+G YF M V G++P ++HY CMVD FI +MP+KPD+VIW
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448
Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
LLGACR+ N EMG+R+ N+L++ + G Y+ LSN+Y E+R M+++ I
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508
Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
++ PGCSLI++DGV+HEF+ D SH K +EI EI K++ GY T V+ ++EE
Sbjct: 509 RKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEE 568
Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
E+KE V+ YHSEK+A AFGLI T PG IRIVKN+RIC DCHS++KL+SKV+KRKI++RD
Sbjct: 569 EDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRD 628
Query: 494 RKHYHHFEDGSCSCLEYW 511
RK +HHF+DGSCSC++YW
Sbjct: 629 RKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
Identities = 203/480 (42%), Positives = 312/480 (65%)
Query: 39 DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
D D S++N Y G++ ++FD ++ +WNS++ + G +DDA ++F++
Sbjct: 94 DKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDE 153
Query: 99 MPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-----SLDLEPNSAILVSLLSACAQLG 153
MP+R+++SW LI+G+ G+ KEAL LFREMQ + PN + ++LSAC +LG
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAI 212
AL+ G WV++YI K +++D +L ALIDMYAKCGS++ A +VF++ G K DV AY++ I
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 213 FGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
LAM G + E F+LF M S I+P+S++++ +L AC H G + +G YF M + G
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333
Query: 272 IKPELDHYACMVDXXXXXXXXXXXXNFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
I P + HY CMVD +FIASMPM+PD +IWG+LL R+ + + +
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393
Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
LIE D + G Y+LLSN+Y +T + + +R M + I + PGCS +E++GVVHEF
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEF 453
Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
+ GD S ++++ IY +EI+++++ GY +T+ V+ D+ E++KE + YHSEKLA+AF
Sbjct: 454 VVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAF 513
Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
L+ T+PG+ +RI+KN+RIC DCH MK++SK+F R+I +RD +HHF DGSCSC ++W
Sbjct: 514 CLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 200/505 (39%), Positives = 320/505 (63%)
Query: 16 SLIQFYSVCGRVRDAR-------WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
+++ S C ++R+ ++ + ++++ N+M++ Y + G I + +LFD M
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293
Query: 69 PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
++++V+W ++L G + A V N MP++ +V+W LIS + QNG+P EAL +F
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353
Query: 129 EMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
E+Q +++ N LVS LSACAQ+GAL+ G W++SYI+K I+++ + +ALI MY+KC
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413
Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
G ++ + +VF+S +DV +++ I GLAM+G EA ++F M+ + P+ +++ V
Sbjct: 414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473
Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDXXXXXXXXXXXXNFIASMPMKPD 307
ACSH G V++ FH M +GI PE HYAC+VD FI +MP+ P
Sbjct: 474 CACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPS 533
Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
+WG LLGAC++H N + + L+E + +DG ++LLSNIY + K EN E+RK
Sbjct: 534 TSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKH 593
Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
MR +K+ PGCS IE+DG++HEFL+GD +H ++++Y E+++K+K+ GY E V
Sbjct: 594 MRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQV 653
Query: 428 MFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
+ IEEEE KE + HSEKLA+ +GLI T+ VIR++KN+R+C DCHS KL+S+++
Sbjct: 654 LQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYD 713
Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
R+I +RDR +HHF +G CSC ++W
Sbjct: 714 REIIVRDRYRFHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 209/511 (40%), Positives = 311/511 (60%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
+K+ +FV +LI Y CG V AR VFDE ++V+WN++I R ++
Sbjct: 133 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAR 192
Query: 63 KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
++FDKM RN SWN +L G ++ G ++ A R+F++MP R VSW +I G A NG E
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
+ FRE+Q + PN L +LSAC+Q G+ ++G ++ +++K + ALID
Sbjct: 253 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 312
Query: 183 MYAKCGSIDLAMQVFHSYGDKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
MY++CG++ +A VF +K + ++TS I GLAM+G EA LF M + G++PD I
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDXXXXXXXXXXXXNFIAS 301
S+I++L ACSH G +E+G YF M V+ I+PE++HY CMVD +FI
Sbjct: 373 SFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQ 432
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
MP+ P ++W TLLGAC H N E+ +++ L E D N+ G +LLSN Y K ++
Sbjct: 433 MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDV 492
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY-GY 420
+RK+M ++IK+ SL+E+ +++F AG++ E ++ +EI+ ++K+ GY
Sbjct: 493 ASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGY 552
Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
E S ++D+EEEEKE + HSEKLALAF L G+ IRIVKN+RIC DCH+ MKL
Sbjct: 553 TPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKL 612
Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
SKV+ +I +RDR +H F+DGSCSC +YW
Sbjct: 613 TSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 200/472 (42%), Positives = 308/472 (65%)
Query: 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
DV NS+++ Y G I ++F +M R+ VSW S++ G + G V++A +F++MP
Sbjct: 151 DVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMP 210
Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
R+L +W ++I+G+A+N ++A+ LF M+ + N ++VS++S+CA LGAL++G
Sbjct: 211 HRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGER 270
Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
Y Y+ K + ++ IL AL+DM+ +CG I+ A+ VF + D +++S I GLA++GH
Sbjct: 271 AYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGH 330
Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
+ +A F M S G P +++ AVLSACSH G VEKG + +M HGI+P L+HY
Sbjct: 331 AHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYG 390
Query: 281 CMVDXXXXXXXXXXXXNFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
C+VD NFI M +KP+ I G LLGAC++++N E+ +R+GNMLI+
Sbjct: 391 CIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPE 450
Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RSHE 399
H G Y+LLSNIY + + E +R M+++ +K+ PG SLIE+DG +++F GD + H
Sbjct: 451 HSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHP 510
Query: 400 KTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPG 459
+ +I + WEEI+ KI+ GY T FD++EEEKE+ I HSEKLA+A+G++ TKPG
Sbjct: 511 EMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPG 570
Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
+ IRIVKN+R+C DCH+ KL+S+V+ R++ +RDR +HHF +G CSC +YW
Sbjct: 571 TTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 200/503 (39%), Positives = 305/503 (60%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK-LFDKM 68
DVF +++ Y V +AR +FD+ + + VSWN+M+ GYV+ GE +E K LFD M
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQ-GERMEMAKELFDVM 338
Query: 69 PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
P RN +WN+++ G + G + +A +F++MPKR VSW +I+G++Q+G EAL LF
Sbjct: 339 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFV 398
Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
+M+ N + S LS CA + AL+ G ++ + K + + AL+ MY KCG
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458
Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
SI+ A +F KD+ ++ + I G + +G A FE+MK +G+ PD + +AVLS
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDXXXXXXXXXXXXNFIASMPMKPDN 308
ACSH G V+KG YF++M +G+ P HYACMVD N + +MP +PD
Sbjct: 519 ACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDA 578
Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
IWGTLLGA RVH N E+ + + + + + G Y+LLSN+Y + + + ++R M
Sbjct: 579 AIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRM 638
Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
R + +K+ PG S IE+ H F GD H + EI+ F EE+ ++K GY +T V+
Sbjct: 639 RDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVL 698
Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
D+EEEEKE ++ YHSE+LA+A+G++ G IR++KN+R+C DCH+A+K ++++ R
Sbjct: 699 HDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRL 758
Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
I +RD +HHF+DGSCSC +YW
Sbjct: 759 IILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 193/466 (41%), Positives = 305/466 (65%)
Query: 48 MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSW 107
+++ Y + G+++ K+FD+MP+R+ VS +++ + G+V+ A +F+ M +R +VSW
Sbjct: 167 LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSW 226
Query: 108 VVLISGFAQNGRPKEALALFREMQSLDL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
V+I G+AQ+G P +AL LF+++ + +P+ +V+ LSAC+Q+GAL+ G W++ +++
Sbjct: 227 NVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK 286
Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
I+L+ +C LIDMY+KCGS++ A+ VF+ KD+ A+ + I G AM+G+S +A
Sbjct: 287 SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALR 346
Query: 227 LFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDX 285
LF M+ G+ P I++I L AC+H G V +G F SM +GIKP+++HY C+V
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSL 406
Query: 286 XXXXXXXXXXXNFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
I +M M D+V+W ++LG+C++H + +G+ I LI + + G Y
Sbjct: 407 LGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIY 466
Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
+LLSNIY E +VR M+++ I + PG S IE++ VHEF AGDR H K++EIY
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIY 526
Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
+I ++IK++GY T +V+ D+EE EKE + HSE+LA+A+GLI TKPGS ++I
Sbjct: 527 TMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIF 586
Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
KN+R+CSDCH+ KL+SK+ RKI +RDR +HHF DGSCSC ++W
Sbjct: 587 KNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 190/464 (40%), Positives = 298/464 (64%)
Query: 48 MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSW 107
+I+ Y G + K+F+ +P + V +++ R G V A ++F MP+R ++W
Sbjct: 149 LISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAW 208
Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
+ISG+AQ G +EAL +F MQ ++ N ++S+LSAC QLGALD G W +SYI++
Sbjct: 209 NAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIER 268
Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
IK+ L L+D+YAKCG ++ AM+VF +K+V ++SA+ GLAMNG + EL
Sbjct: 269 NKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLEL 328
Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDXXX 287
F MK G++P+++++++VL CS +G+V++G +F SM + GI+P+L+HY C+VD
Sbjct: 329 FSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYA 388
Query: 288 XXXXXXXXXNFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347
+ I MPMKP +W +LL A R+++N E+G ++E + + G Y+L
Sbjct: 389 RAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVL 448
Query: 348 LSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
LSNIY ++ +N VR++M+ + +++ PGCS++E++G VHEF GD+SH K +I
Sbjct: 449 LSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAV 508
Query: 408 WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKN 467
W++I ++++ GY +T VMFDI+EEEKE + HSEK A+AFG++ K IRIVKN
Sbjct: 509 WKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKN 568
Query: 468 IRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
+R+C DCH ++SK+F R+I +RDR +HHF+DG CSC +W
Sbjct: 569 LRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 207/513 (40%), Positives = 321/513 (62%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD-----DLDVVSWNSMINGY-----VRNGEIL 59
+VF+ N+LI+ Y+ G A ++ E + D ++ +I VR GE +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 60 EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
+ + V NS+L G V A +VF++MP++ LV+W +I+GFA+NG+
Sbjct: 144 HSVVIRSGFGSLIYVQ-NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
P+EALAL+ EM S ++P+ +VSLLSACA++GAL G V+ Y+ K + +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 262
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISP 238
L+D+YA+CG ++ A +F DK+ ++TS I GLA+NG EA ELF+ M+S +G+ P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322
Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDXXXXXXXXXXXXNF 298
I+++ +L ACSH G V++GF YF M + + I+P ++H+ CMVD +
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382
Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
I SMPM+P+ VIW TLLGAC VH ++++ + +++ + NH G Y+LLSN+Y +
Sbjct: 383 IKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRW 442
Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
+ +++RK M + +K+ PG SL+E+ VHEFL GD+SH ++ IY +E+ ++++
Sbjct: 443 SDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSE 502
Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
GY + +V D+EEEEKE + YHSEK+A+AF LI T S I +VKN+R+C+DCH A+
Sbjct: 503 GYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAI 562
Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
KLVSKV+ R+I +RDR +HHF++GSCSC +YW
Sbjct: 563 KLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 511 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-145 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-129 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-54 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-38 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-34 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 438 bits (1127), Expect = e-145
Identities = 217/545 (39%), Positives = 310/545 (56%), Gaps = 42/545 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
VVK FA DV V NSLIQ Y G +A VF + D VSW +MI+GY +NG +
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373
Query: 62 LKLFDKMPQRN----DVSWNSILGGLVRFGS----------------------------- 88
L+ + M Q N +++ S+L G
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 89 ------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
+D A VF+ +P++ ++SW +I+G N R EAL FR+M L L+PNS L
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTL 492
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
++ LSACA++GAL G +++++ + I D L AL+D+Y +CG ++ A F+S+ +
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
KDV ++ + G +G A ELF M G++PD +++I++L ACS G V +G Y
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
FHSM + + I P L HYAC+VDLLGRAG L EA NFI MP+ PD +WG LL ACR+HR
Sbjct: 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR 671
Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
+ E+G+ + E D N G YILL N+Y + K + VRKTMR+ + PGCS +
Sbjct: 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731
Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
E+ G VH FL D SH + +EI E +K+K G S M +IE + + G
Sbjct: 732 EVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG- 790
Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
HSE+LA+AFGLI T PG I + KN+ +C +CH+ +K +SK+ +R+IS+RD + +HHF+D
Sbjct: 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKD 850
Query: 503 GSCSC 507
G CSC
Sbjct: 851 GECSC 855
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-129
Identities = 178/549 (32%), Positives = 302/549 (55%), Gaps = 39/549 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
V + F D ++ N ++ + CG + DAR +FDE + ++ SW ++I G V G E
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208
Query: 62 LKLFDKMPQRND---------------VSWNSILG--------------------GLV-- 84
LF +M + ++ G L+
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 85 --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
+ G ++DA VF+ MP+++ V+W +++G+A +G +EAL L+ EM+ + +
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
++ ++L L++ ++ + + LD + AL+D+Y+K G ++ A VF
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
K++ ++ + I G +G +A E+FE M ++G++P+ ++++AVLSAC + G E+G+
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
F SM + H IKP HYACM++LLGR GLL+EA I P KP +W LL ACR+H+
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508
Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
N E+G+ L Y++L N+Y + + A +V +T++++ + P C+ I
Sbjct: 509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568
Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
E+ H F +GDR H +++EIYQ +E++K+I YGY E ++ D++E+E++ Y
Sbjct: 569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628
Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
HSEKLA+AFGLI T + ++I ++ RIC DCH +K ++ V KR+I +RD +HHF+
Sbjct: 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKL 688
Query: 503 GSCSCLEYW 511
G CSC +YW
Sbjct: 689 GKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (496), Expect = 5e-54
Identities = 131/382 (34%), Positives = 190/382 (49%), Gaps = 47/382 (12%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
VV+ F DV V N+LI Y CG V AR VFD D +SWN+MI+GY NGE LEG
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272
Query: 62 LKLFDKMPQRN--------------------------------------DVSW-NSILGG 82
L+LF M + + DVS NS++
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332
Query: 83 LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
+ GS +A +VF++M + VSW +ISG+ +NG P +AL + M+ ++ P+ +
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
S+LSACA LG LD G ++ ++K + ++ ALI+MY+KC ID A++VFH+ +
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
KDV ++TS I GL +N EA F M + P+S++ IA LSAC+ +G + G
Sbjct: 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG-KE 510
Query: 263 FHSMFDVHGIKPELDHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
H+ GI D + ++DL R G + A N S + D V W LL
Sbjct: 511 IHAHVLRTGIG--FDGFLPNALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVA 566
Query: 321 HRNAEMGQRIGNMLIESDQNHD 342
H M + N ++ES N D
Sbjct: 567 HGKGSMAVELFNRMVESGVNPD 588
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 7e-38
Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 13/316 (4%)
Query: 16 SLIQFYSVCGRVRDARWVFD-----ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
S I+ CGR R+A +F+ L ++++++ + I ++ +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 71 R----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
+ N +L V+ G + DA R+F++MP+R+L SW +I G G +EA AL
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211
Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
FREM + V +L A A LG+ G ++ + K + D+ + ALIDMY+K
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
CG I+ A VF +K A+ S + G A++G+S EA L+ M+ G+S D ++ +
Sbjct: 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
+ S L +E H+ G ++ +VDL + G +E+A N MP K
Sbjct: 332 IRIFSRLALLEHA-KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK- 389
Query: 307 DNVI-WGTLLGACRVH 321
N+I W L+ H
Sbjct: 390 -NLISWNALIAGYGNH 404
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-34
Identities = 99/351 (28%), Positives = 169/351 (48%), Gaps = 42/351 (11%)
Query: 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---PQR 71
N+++ + G + A +VF + + D+ SWN ++ GY + G E L L+ +M R
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 72 NDV-SWNSIL---GGL-------------VRFGSVDD-------------------ACRV 95
DV ++ +L GG+ VRFG D A V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 96 FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
F++MP+R +SW +ISG+ +NG E L LF M+ L ++P+ + S++SAC LG
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
G ++ Y+ K +D +C +LI MY GS A +VF KD ++T+ I G
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
NG +A E + M+ +SPD I+ +VLSAC+ LG ++ G H + + G+
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV-KLHELAERKGLISY 423
Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACRVHRNAE 325
+ ++++ + +++A ++P K D + W +++ G +R E
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
PGC E + L+GD SH ++E E+ ++IK G ET+ + D++ EE
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 437 ETVIGY------HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKIS 490
H+EK ALA+GL+ T+ I R+C DCH + ++K R+I
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTTRI-----IKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 491 IRDRKHYHHFE 501
+RD +HHF+
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 7e-15
Identities = 67/332 (20%), Positives = 145/332 (43%), Gaps = 55/332 (16%)
Query: 16 SLIQFYSVCGRVRDARW-VFDESD----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
+LI + G+V DA + VF E + +V ++ ++I+G R G++ + + M
Sbjct: 477 TLISTCAKSGKV-DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 71 RN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRSL------VSWVVLISGFAQNGRP 120
+N V +N+++ + G+VD A V +M + ++ L+ A G+
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
A +++ + +++ + +++C+Q G D+ +Y ++KK +K D + +AL
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
+D+ G +D +AFE+ ++ + +GI +
Sbjct: 656 VDVAGHAGDLD-------------------------------KAFEILQDARKQGIKLGT 684
Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK--PELDHYACMVDLLGRAGLLEEAENF 298
+SY +++ ACS+ +K + D+ IK P + ++ L L +A
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYE---DIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 299 IASMP---MKPDNVIWGTLLGACRVHRNAEMG 327
++ M + P+ + + LL A +A++G
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 80/356 (22%), Positives = 128/356 (35%), Gaps = 80/356 (22%)
Query: 37 SDDLDVVSWNSMINGYVRNGEIL-----EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD 91
D ++ +S E G+ K P+ D +N +L R G + D
Sbjct: 334 VKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDA-YNRLL----RDGRIKD 388
Query: 92 ACRVFNQMPKRSLVSWV-VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
+ M KR L+ + + F + + + A+ L P + L+S CA
Sbjct: 389 CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA--- 207
+D V +Q+ +K D L LI AK G +D +VFH + V A
Sbjct: 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508
Query: 208 -YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
+ + I G A G +AF + M+SK + PD + + A++SAC G V++ F
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF------ 562
Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
D+L AE + P+ PD++ G L+ AC A
Sbjct: 563 -----------------DVL--------AEMKAETHPIDPDHITVGALMKAC-----ANA 592
Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
GQ + A+EV + + + IK P I
Sbjct: 593 GQ-----------------------------VDRAKEVYQMIHEYNIKGTPEVYTI 619
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 36/138 (26%), Positives = 62/138 (44%)
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
+G+ ++AL L MQ L + + V+L C A++ G+ V S L
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
L A++ M+ + G + A VF ++D+ ++ + G A G+ EA L+ M
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179
Query: 233 SKGISPDSISYIAVLSAC 250
G+ PD ++ VL C
Sbjct: 180 WAGVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-09
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
DV Y + I G G EA +LF MK +GI P+ +Y ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 18/49 (36%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSWNSILGGLVR 85
DVV++N++I+GY + G++ E LKLF++M +R N +++ ++ GL +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
V++ LI G+ + G+ +EAL LF EM+ ++PN L+ +
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL----VSWVVLISGFAQ 116
+ V++N+++ G + G V++A ++FN+M KR + ++ +LI G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 43 VSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
V++NS+I+GY + G++ E L+LF +M ++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 41 DVVSWNSMINGYVRNGEILEGLKLFDKMP 69
DVV++N++I+G R G + E ++L D+M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDL 135
V++ LISG+ + G+ +EAL LF+EM+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
V++ LI G + GR +EAL LF+EM+ +EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 43 VSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
V++N++I+G + G + E L+LF +M +R
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 3e-04
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 67 KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
K + + V++N+++ GL R G VD+A + ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 98 QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
+ K +V++ LI G + GR EA+ L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
L ++ L+ A+ G P ALA+ EM++ L+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
Y + I GL G EA ELF+ MK +GI PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
Y S I G G EA ELF+ MK KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.35 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.94 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.85 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.82 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.79 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.75 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.73 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.6 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.25 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.08 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.06 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.03 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.91 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.73 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.5 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.44 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.43 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.41 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.41 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.33 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.29 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.27 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.21 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.2 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.17 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.16 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.02 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.0 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.68 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.62 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.6 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.35 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.18 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.07 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.99 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.75 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.48 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.28 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.27 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.21 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.19 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.18 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.08 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.94 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.88 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.82 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.67 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.57 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.05 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.03 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.86 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.68 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.63 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.54 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.5 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.37 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.86 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.62 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.09 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.8 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.6 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.49 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.21 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.12 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.01 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.69 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.17 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.04 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.76 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.01 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.6 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.72 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.37 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.17 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.89 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.8 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.76 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.44 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 85.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.29 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.17 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.78 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.78 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.56 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.4 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.67 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.22 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.08 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.06 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.57 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.65 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.53 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.07 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.88 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.8 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.34 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.22 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.07 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-112 Score=890.56 Aligned_cols=510 Identities=35% Similarity=0.659 Sum_probs=501.0
Q ss_pred EeecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----------
Q 010405 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----------- 70 (511)
Q Consensus 2 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------- 70 (511)
|++.|+.||+.+||+|+++|+++|++++|+++|++|++||+++||++|.+|++.|++++|+++|++|.+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999942
Q ss_pred ----------------------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhH
Q 010405 71 ----------------------------RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122 (511)
Q Consensus 71 ----------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (511)
+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 4566789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 202 (511)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 282 (511)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.++.|++..+|..|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhh
Q 010405 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442 (511)
Q Consensus 363 ~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~ 442 (511)
++++.|+++|+.+.|+++|+++++.+|.|++|+..||+.+++++.+.++..+|++.||.||+.+++|++++++|+..+.+
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccCCCCCcEEEecccccCcchhhHHHHhhhhcCceEEEeCCCccccccCccccCCCCC
Q 010405 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511 (511)
Q Consensus 443 ~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~~s~~~~~ 511 (511)
||||||++||++++|+|+||||+||||+|+|||+|+|+||++++|+|||||.+|||||++|+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-105 Score=859.95 Aligned_cols=505 Identities=42% Similarity=0.730 Sum_probs=491.8
Q ss_pred EeecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----------
Q 010405 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----------- 70 (511)
Q Consensus 2 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------- 70 (511)
|++.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 457799999999999999999999999999999999999999999999999999999999999999942
Q ss_pred ----------------------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhH
Q 010405 71 ----------------------------RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122 (511)
Q Consensus 71 ----------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (511)
++..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 3556788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 202 (511)
|+++|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 9999999986 5999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 282 (511)
+|.++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999668999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++|+++..|..|+++|+..|+|++|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhh
Q 010405 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442 (511)
Q Consensus 363 ~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~ 442 (511)
++++.|+++|++++|++||+++++.+|.|.+|+.+||+.+++++.++++..+|++.||.||+..+++ .++++|+..+++
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~ 790 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc-ccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998884 477899999999
Q ss_pred hhHHHHHHHHhccCCCCCcEEEecccccCcchhhHHHHhhhhcCceEEEeCCCccccccCccccCCC
Q 010405 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509 (511)
Q Consensus 443 ~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~~s~~~ 509 (511)
||||||++||+++||+|+||||+||||+|+|||+++|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=549.37 Aligned_cols=494 Identities=22% Similarity=0.326 Sum_probs=433.1
Q ss_pred eecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----C-------
Q 010405 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----R------- 71 (511)
Q Consensus 3 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~------- 71 (511)
++.|..++..++|+|+++|+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|.. |
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999952 4
Q ss_pred ----------------------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHH
Q 010405 72 ----------------------------NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 72 ----------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (511)
|..++|+||.+|+++|++++|.++|++|+++|+++||+||.+|++.|++++|
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 4556688889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 010405 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 203 (511)
+++|++|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHH
Q 010405 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283 (511)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 283 (511)
|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+ .|+.|+..+|+.|+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li 431 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALI 431 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
++|+++|++++|.++|++|+ +||..+|++++.+|.+.|+.++|..+|++|....++|..+|..++.+|++.|.++.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999999997 47999999999999999999999999999988544466788888877777777777777
Q ss_pred HHHHHHhCCCccCCceeEEEECC----------------------EEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcc
Q 010405 364 VRKTMRKRKIKRAPGCSLIELDG----------------------VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421 (511)
Q Consensus 364 ~~~~m~~~g~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~ 421 (511)
++..|.+.|+.++.......+.. ....++.++..|++.+++. +++++|++.|+.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~ 586 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV----ELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCC
Confidence 77777777765544322211100 0012356677788888887 788899999999
Q ss_pred cCCccccccCchhhhhhhh---hhhhHHHHHHHHhccCCCCCcEEEecccccCcchhhHHHHhhhhcCc------eEEEe
Q 010405 422 VETRSVMFDIEEEEKETVI---GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR------KISIR 492 (511)
Q Consensus 422 p~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~------~i~~~ 492 (511)
||..++...+..+.+.+.+ ....+.+...+|+.|+..++. ++++.+.++|+..+|.++|.+|+.+ ..++.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999987776666665554 345666666789888776666 7999999999999999999999644 23444
Q ss_pred CCCccccccCc
Q 010405 493 DRKHYHHFEDG 503 (511)
Q Consensus 493 d~~~~h~~~~g 503 (511)
.|+.+.+.+.|
T Consensus 666 ac~~~~~~e~~ 676 (857)
T PLN03077 666 ACRIHRHVELG 676 (857)
T ss_pred HHHHcCChHHH
Confidence 55444444444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=497.24 Aligned_cols=479 Identities=17% Similarity=0.209 Sum_probs=411.7
Q ss_pred eecCC-CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CChhHHH
Q 010405 3 VKNSF-AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWN 77 (511)
Q Consensus 3 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~ 77 (511)
.+.|+ .++...++.++..|.+.|.+++|..+|+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 397 ~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 397 EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44564 578888899999999999999999999999999999999999999999999999999999974 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 010405 78 SILGGLVRFGSVDDACRVFNQMP----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 153 (511)
+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999998 48999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHH
Q 010405 154 ALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFEL 227 (511)
Q Consensus 154 ~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 227 (511)
++++|.++|++|.+ .|+.||..+|++|+++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999986 67899999999999999999999999999999986 5678999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 010405 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PM 304 (511)
Q Consensus 228 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 304 (511)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.|+.+|+++|++++|.++|++| +.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998 899999999999999999999999999999998 57
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 010405 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382 (511)
Q Consensus 305 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 382 (511)
.||..+|++||.+|++.|++++|.+++++|.+ ..| |..+|..|+.+|.+.|++++|.++++.|.+.|+.|+...+..
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 89999999999999999999999999999987 445 678999999999999999999999999999999988754433
Q ss_pred EEC-------------CEEEEEEeCCC--CCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhhhHHH
Q 010405 383 ELD-------------GVVHEFLAGDR--SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447 (511)
Q Consensus 383 ~~~-------------~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l 447 (511)
.++ ..+..|-.+.. ......+++ .++++|++.|+.||..++...+ .+....--....+++
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHH
Confidence 221 11111111110 011223333 7899999999999988865544 222111112234555
Q ss_pred HHHHHhccCCCCCcE--EEecccccCcchhhHHHHhhhhcCceEE
Q 010405 448 ALAFGLICTKPGSVI--RIVKNIRICSDCHSAMKLVSKVFKRKIS 490 (511)
Q Consensus 448 a~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~s~~~~~~i~ 490 (511)
--.+++.+.+++... .+++.+ |..-.+|..+..+|..+.|+
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHHHHHcCCC
Confidence 566777776665442 344543 11225799999998888654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-59 Score=488.39 Aligned_cols=476 Identities=23% Similarity=0.333 Sum_probs=416.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CChhHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD-----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNS 78 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 78 (511)
..+..+++++|..|.+.|++++|.++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+ ||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466799999999999999999999999885 46889999999999999999999999999964 89999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (511)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 318 (511)
|..||+.++.+|++.|++++|.+++..|.+ .|+.|+..+|+.|+++|+++|++++|.++|++|. +||..+|++||.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 999999999999999999999999999998 8999999999999999999999999999999997 58999999999999
Q ss_pred HhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEeCC
Q 010405 319 RVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK-RKIKRAPGCSLIELDGVVHEFLAGD 395 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
.++|+.++|.++|++|.+ ..| |..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+...+... +.++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l--------i~~l 472 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM--------IELL 472 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH--------HHHH
Confidence 999999999999999988 455 568999999999999999999999999976 5887766544432 3445
Q ss_pred CCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhh---hhhhHHHHHHHHhccCCCCCcEEEecccccCc
Q 010405 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI---GYHSEKLALAFGLICTKPGSVIRIVKNIRICS 472 (511)
Q Consensus 396 ~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~ 472 (511)
...++.+++++ ++ ++.+..|+..++...+..+.+.+.+ ....+++ +++.+...+..+.+++-+..+|
T Consensus 473 ~r~G~~~eA~~----~~---~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l---~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 473 GREGLLDEAYA----MI---RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL---YGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HhcCCHHHHHH----HH---HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH---hCCCCCCCcchHHHHHHHHhCC
Confidence 56778887773 33 3457889877644433333322221 1122222 4554544455566778889999
Q ss_pred chhhHHHHhhhhcCceEEEe-------CCCccccccCcc
Q 010405 473 DCHSAMKLVSKVFKRKISIR-------DRKHYHHFEDGS 504 (511)
Q Consensus 473 ~~~~~~~~~s~~~~~~i~~~-------d~~~~h~~~~g~ 504 (511)
+..+|.++...|..+.+-.. -.+..|.|-.|-
T Consensus 543 ~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred CHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 99999999999998865321 123456665553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=465.72 Aligned_cols=405 Identities=18% Similarity=0.249 Sum_probs=378.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCh-----hHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDV-----VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGG 82 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 82 (511)
.++...|..++..|.++|++++|+++|++|+.++. ..++.++.+|.+.|..++|+.+|+.|..||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45778899999999999999999999999986554 4566778889999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK----RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999974 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG------DKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
.++|+.|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999995 4799999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHH
Q 010405 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNV 309 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 309 (511)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.|+++|++.|++++|.+++++| +..||..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999998 899999999999999999999999999999998 6889999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 387 (511)
+|++|+.+|.+.|++++|.++|++|.+ ..| +..+|+.|+.+|++.|++++|.+++++|.+.|+.|+..++...
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL---- 760 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL---- 760 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Confidence 999999999999999999999999987 455 5789999999999999999999999999999998887665543
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCcc
Q 010405 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRS 426 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~ 426 (511)
+.+....+..+++. +++.+|.+.|+.||..+
T Consensus 761 ----L~a~~k~G~le~A~----~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 761 ----LVASERKDDADVGL----DLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred ----HHHHHHCCCHHHHH----HHHHHHHHcCCCCCHHH
Confidence 34455667777776 78899999999999764
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=209.29 Aligned_cols=106 Identities=55% Similarity=0.999 Sum_probs=96.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhh--------hhhhhhhhHHHHH
Q 010405 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK--------ETVIGYHSEKLAL 449 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 449 (511)
+++|+++ |.|++|+.+||+. ++..+|...|+.|++..++|++.++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5788766 9999999999988 456778889999999999998888765 5688999999999
Q ss_pred HHHhccCCCCCcEEEeccc-ccCcchhhHHHHhhhhcCceEEEeCCCcccccc
Q 010405 450 AFGLICTKPGSVIRIVKNI-RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501 (511)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~ 501 (511)
+||++++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-24 Score=233.27 Aligned_cols=358 Identities=12% Similarity=0.061 Sum_probs=266.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHH
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGG 82 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 82 (511)
.+...+..+...|...|++++|.+.|+++. +.+..++..+...+.+.|+.++|...|+++.+ .+...+..++..
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 345667778888888888888888888764 34667788888888888888888888887754 345567777888
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
|.+.|++++|..+++++.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887753 356678888888888888888888888887653 345667777788888888888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
.+++.+.+.. +.+..++..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|++.|+++...+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 8888887764 44567777888888888888888888887764 244567777777778888888888888877653
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHH
Q 010405 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTL 314 (511)
Q Consensus 237 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l 314 (511)
|+..++..+..++...|+.++|.+.+..+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ... ++...+..+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4446666677777788888888888877776 23455677777777788888888888887776 222 356667777
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
...+...|+ .+|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777 6677777777777777777777777777777777777777777776554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=234.79 Aligned_cols=359 Identities=13% Similarity=0.096 Sum_probs=317.0
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHH
Q 010405 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSIL 80 (511)
Q Consensus 7 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 80 (511)
.++++.++..+...|...|++++|...|+++. +.+...+..+...+...|++++|.+.|+++.+ .+..++..+.
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45678899999999999999999999999754 45677888899999999999999999999865 4677889999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 157 (511)
..|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|+.+++.+.... +.+..+|..+..++...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999854 355678899999999999999999999998753 5678899999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|..+++.+...
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998875 45677889999999999999999999998765 35678999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 010405 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWG 312 (511)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 312 (511)
+ +++...+..+...+...|++++|...|..+.. ..|+..++..++.++.+.|++++|.+.++++ ... .+...+.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5 44677788888899999999999999999987 3466678888999999999999999999887 333 4677888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
.+...+...|+.++|...++++.+..|+++.++..++.++...|+ ++|...+++..+..
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 888899999999999999999999999999999999999999999 88999999887753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=185.64 Aligned_cols=355 Identities=15% Similarity=0.165 Sum_probs=307.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCh--hH-HHHHHHHHH
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND--VS-WNSILGGLV 84 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~li~~~~ 84 (511)
..+|+.+.+.+-..|++++|+..++.+. +..+..|..+..++...|+.+.|.+.|.+..+-|+ .. .+.+....-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 4578889999999999999999999765 34678999999999999999999999999987443 33 334555666
Q ss_pred hcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHH
Q 010405 85 RFGSVDDACRVFNQMPK--RS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN-SAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
..|++.+|...+.+..+ |. .+.|+.|...+-.+|+...|++.|++.... .|+ ..+|..|...|...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 78999999999888765 43 368999999999999999999999999875 454 5789999999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
.+.++.... +-...++..|...|...|.+|.|+..|++..+ |+ ..+|+.|..++-..|+..+|.+.|.+.+.. .
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~ 350 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--C 350 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--C
Confidence 999888763 34567788888999999999999999999876 33 358999999999999999999999998875 4
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHH
Q 010405 238 PD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGT 313 (511)
Q Consensus 238 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ 313 (511)
|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|..-+++. .++|+.. .++.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 44 56888999999999999999999999876 5566 677899999999999999999999887 7888754 8899
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+...|...|+.+.|.+.+.+++..+|.-..++..|+.+|-.+|+..+|+.-+++..+...
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999998876443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=186.52 Aligned_cols=292 Identities=12% Similarity=0.075 Sum_probs=196.6
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHH
Q 010405 83 LVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN---SAILVSLLSACAQLGALD 156 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~ 156 (511)
+...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4455566666666665543 2 334556666666666666666666666655321111 134555566666666666
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCe--------eehHHHHHHHHHcCChHHHHHHH
Q 010405 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV--------SAYTSAIFGLAMNGHSIEAFELF 228 (511)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~ 228 (511)
+|..+++.+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+. ..|..+...+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666666542 33455666666666666666666666666543211 12445666677788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 010405 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD 307 (511)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 307 (511)
+++.+.. +.+...+..+...+...|++++|.++|+++.+ .+......++..++.+|.+.|++++|...++++ ...|+
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8877643 22345666777788888888888888888876 221112456778888889999999999988887 45677
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH---cCCchHHHHHHHHHHhCCCccCCc
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE---TLKGENAEEVRKTMRKRKIKRAPG 378 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~ 378 (511)
...+..+...+...|++++|..+++++.+..|++. .+..++..+.. .|+.+++..++++|.++++.++|.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777788888999999999999999998888764 56656665554 458899999999999988888876
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-20 Score=182.15 Aligned_cols=285 Identities=17% Similarity=0.095 Sum_probs=235.5
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C------hhHHHHHHHHHHHC
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-S------LVSWVVLISGFAQN 117 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~ 117 (511)
....+...|++++|+..|+++.+ | +..++..+...|...|++++|..+++.+... + ...+..++..|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456778999999999999875 3 4457888888999999999999999887642 1 24678889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHH
Q 010405 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSIDLA 193 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A 193 (511)
|++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 45678899999999999999999999999988653332 22456788889999999999
Q ss_pred HHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc
Q 010405 194 MQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270 (511)
Q Consensus 194 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 270 (511)
.+.|+++.+ | +..++..+...|.+.|++++|+++|+++...+......++..+..+|...|++++|...++.+.+
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 999998865 3 44577888899999999999999999998764333346788899999999999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHhh
Q 010405 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRV---HRNAEMGQRIGNMLIE 336 (511)
Q Consensus 271 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 336 (511)
..|+...+..++..+.+.|++++|.++++++ ...|+..++..++..+.. .|+.+++..+++++.+
T Consensus 278 -~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 -EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 3577667789999999999999999999876 667999999988887654 5689999999998887
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=186.85 Aligned_cols=353 Identities=12% Similarity=-0.021 Sum_probs=280.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCC
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGS 88 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 88 (511)
+..+...|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.+++..+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4456778889999999999999754 57788899999999999999999999999876 3 45688889999999999
Q ss_pred HHHHHHHHhhCCC---------------------------------CChhHHHHHHHH----------------------
Q 010405 89 VDDACRVFNQMPK---------------------------------RSLVSWVVLISG---------------------- 113 (511)
Q Consensus 89 ~~~A~~~~~~~~~---------------------------------~~~~~~~~li~~---------------------- 113 (511)
+++|...|..... .+..++..+...
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9999875543210 010111111000
Q ss_pred ----H----------HHCCChhHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 114 ----F----------AQNGRPKEALALFREMQSLD-LEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 114 ----~----------~~~g~~~~A~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...+++.++.. +.....|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Confidence 0 11257889999999998764 233 45678888888999999999999999999874 3346688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..... +.+...+..+..++...|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 8899999999999999999998764 356789999999999999999999999998853 224666777888899999
Q ss_pred CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCchh
Q 010405 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-V-------IWGTLLGACRVHRNAE 325 (511)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~ 325 (511)
++++|...|+...+ ..+.+...++.+..++...|++++|.+.|++. ...|+. . .++..+..+...|+++
T Consensus 448 ~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 448 SIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999987 23445788999999999999999999999886 444421 1 1122222344569999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|..+++++++++|++...+..++.+|...|++++|.+.+++..+
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999988999999999999999999999998865
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-18 Score=178.21 Aligned_cols=319 Identities=11% Similarity=-0.006 Sum_probs=199.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 90 (511)
++....+.|++++|+.+++... +.+...+..++.+....|++++|++.|+++.+ | +...+..+...+.+.|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 3445556677777777766543 23444555555666667777777777777754 2 3455666667777777777
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 91 DACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 91 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
+|...|++..+ | +...|..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+++
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 77777777653 2 4456667777777777777777777766554321 22223222 335667777777777777666
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIE----AFELFENMKSKGISPDS 240 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~ 240 (511)
....++......+..++.+.|++++|...|++... .+...+..+...|...|++++ |+..|++..+.. +.+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~ 284 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNV 284 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCH
Confidence 54333344444556667777777777777776654 244556666777777777764 677777776642 1234
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWG-TLLGA 317 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~ 317 (511)
..+..+...+...|++++|...+++..+ ..| +...+..+..+|.+.|++++|.+.++++ ...|+...+. .+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 5666666777777777777777777765 223 3455666677777777777777777665 3445543333 23455
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCC
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+...|+.++|...++++.+..|++
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhh
Confidence 667777777777777777776654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=169.10 Aligned_cols=343 Identities=14% Similarity=0.082 Sum_probs=294.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHH-HHHHHHHHcCChHHHHHHHccCCC--CC-hhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDD--LDVVSWN-SMINGYVRNGEILEGLKLFDKMPQ--RN-DVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~ 83 (511)
.+..|..+..+|...|+.+.|.+.|.+..+ |+..... .+...+-..|+.++|...|.+..+ |. .++|+.|...+
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f 228 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF 228 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH
Confidence 467889999999999999999999987664 4434333 333445568999999999998876 33 57899999999
Q ss_pred HhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 010405 84 VRFGSVDDACRVFNQMPKRSL---VSWVVLISGFAQNGRPKEALALFREMQSLDLEP-NSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
-..|++..|...|++..+-|+ .+|-.|...|...+.+++|+..|.+.... .| ....+..+...|...|.+|.|+
T Consensus 229 ~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred hhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHH
Confidence 999999999999999876443 68999999999999999999999988775 45 4677888888899999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
..+++.++.. |--...|+.|..++-..|++.+|...|.+... .-..+.+.|...|...|..++|..+|..... +
T Consensus 307 ~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v 383 (966)
T KOG4626|consen 307 DTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--V 383 (966)
T ss_pred HHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--h
Confidence 9999999874 33467999999999999999999999998775 2446789999999999999999999999887 4
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHH
Q 010405 237 SPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-VIWG 312 (511)
Q Consensus 237 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 312 (511)
.|. ...++.|...|-+.|++++|+..|++..+ +.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|.- ...+
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 555 56788999999999999999999999986 7888 688999999999999999999999886 677754 4788
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
.|...+...|+..+|+..++..+++.|+.+.+|-.++.++---.+|.+
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 899999999999999999999999999999999999888777777766
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-18 Score=186.60 Aligned_cols=347 Identities=10% Similarity=0.018 Sum_probs=240.6
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCh---hHHH------------
Q 010405 18 IQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RND---VSWN------------ 77 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~------------ 77 (511)
...+...|++++|+..|++.. +.|...+..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 456778899999999998754 34778899999999999999999999998865 322 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH-----
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC----- 149 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~----- 149 (511)
.....+.+.|++++|...|++..+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 223457789999999999998764 355678888999999999999999999988753 22344444443333
Q ss_pred -------------------------------------HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 150 -------------------------------------AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 150 -------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
...|++++|.+.++++++.. |.+..++..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455566666666655543 2244455555666666666666
Q ss_pred HHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCCHHHHH
Q 010405 193 AMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI---------SYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 193 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~~a~ 260 (511)
|...|+++.+ | +...+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++|.
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666665432 2 22333333344445566666666655543221111111 1123344566667777777
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
.+++. .+++...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|+.++|++.++.+.+..
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 76651 2345566778888999999999999999887 4455 56688888899999999999999999999899
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
|+++..+..++.++...|++++|.++++.+.+..
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9888888889999999999999999999887654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-17 Score=172.37 Aligned_cols=345 Identities=12% Similarity=-0.016 Sum_probs=274.7
Q ss_pred HhcCChHHHHHHHhcCCC------CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHH
Q 010405 22 SVCGRVRDARWVFDESDD------LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDA 92 (511)
Q Consensus 22 ~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 92 (511)
.+..+++.---.|..-++ .+......++..+.+.|++++|+.+++.... .+......++......|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 355566665555655442 1223345567788999999999999988864 3455666666777889999999
Q ss_pred HHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 93 CRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 93 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
...|+++.+ | +...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+....
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 999999864 3 55788999999999999999999999998753 3356788889999999999999999999887764
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD----VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 245 (511)
.. +...+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..|+++.... +.+...+..
T Consensus 175 P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 175 PP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 33 34444444 34788999999999999876532 2334455678889999999999999998764 234667778
Q ss_pred HHHHHhccCCHHH----HHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 010405 246 VLSACSHLGWVEK----GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACR 319 (511)
Q Consensus 246 ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 319 (511)
+..++...|+.++ |...|+.+.+. -+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8889999999986 89999999872 2335778999999999999999999999987 44564 556777888899
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..|++++|...++++.+..|+++..+..++.++...|++++|.+.+++..+..
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999887667777889999999999999999887654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-16 Score=177.11 Aligned_cols=347 Identities=12% Similarity=0.028 Sum_probs=276.5
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHH
Q 010405 18 IQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDD 91 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~ 91 (511)
...+.+.|++++|+..|++.. +.+...+..+...+...|++++|++.|+++.+ | +...+..+...|. .++.++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 456778999999999999765 44667888899999999999999999999875 3 4556777777775 467899
Q ss_pred HHHHHhhCCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 010405 92 ACRVFNQMPKRS------------LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 92 A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999998876421 1245567788899999999999999998864 335677888999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----e---------eehHHHHHHHHHcCChHHHHH
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD----V---------SAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~ 226 (511)
..++++++.. +.+...+..+...+.+.|+.++|+..++.+.... . ..+..+...+...|+.++|++
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999998764 4455666666667788999999999999886421 1 112345667888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK 305 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 305 (511)
+++. .+++...+..+...+...|+.++|+..|+.+.+. -+.+...+..++..|...|++++|++.++.. ...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 9872 2345566777888999999999999999999872 2345788999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHHh-CCCc
Q 010405 306 P-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD------GRYILLSNIYVETLKGENAEEVRKTMRK-RKIK 374 (511)
Q Consensus 306 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~ 374 (511)
| +...+..+..++...|++++|.++++++....|+++ ..+..++.++...|++++|.+.++.... .|+.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 5 445667777888999999999999999999766543 3566678999999999999999987753 3443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-16 Score=167.92 Aligned_cols=356 Identities=9% Similarity=0.006 Sum_probs=232.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcC
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFG 87 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 87 (511)
..-.+......|+.++|+++|.+..+ .+...+..+...+...|++++|.++|++..+ .+...+..+...+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 33444555555666666666655332 2333456666666666666666666666432 23444555555566666
Q ss_pred CHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH---------
Q 010405 88 SVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL--------- 155 (511)
Q Consensus 88 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~--------- 155 (511)
+.++|...+++..+ | +.. |..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666665542 2 333 5555556666666666666666665542 11333333334333333333
Q ss_pred -------------------------------------HHHHHHHHHHHHc-CCCccHH--HHHH---HHHHHHhcCCHHH
Q 010405 156 -------------------------------------DYGNWVYSYIQKK-CIKLDSI--LCAA---LIDMYAKCGSIDL 192 (511)
Q Consensus 156 -------------------------------------~~a~~~~~~~~~~-~~~~~~~--~~~~---li~~y~~~g~~~~ 192 (511)
++|++.++.+.+. ...|+.. ...+ .+.++...|++++
T Consensus 176 ~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 176 ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 4455555555543 1122211 1111 1234457799999
Q ss_pred HHHHHHhcCCCC--eee--hHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010405 193 AMQVFHSYGDKD--VSA--YTSAIFGLAMNGHSIEAFELFENMKSKGISP---DSISYIAVLSACSHLGWVEKGFYYFHS 265 (511)
Q Consensus 193 A~~~~~~~~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~ 265 (511)
|++.|+.+.+.+ ... -..+...|...|++++|+.+|+++....... .......+..++...|++++|..+++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999988642 122 2225678999999999999999987643211 123456667788999999999999999
Q ss_pred chhhcC----------CCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 010405 266 MFDVHG----------IKPE---LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 266 ~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|++.
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 987211 1123 234567788899999999999999987 3344 566888888999999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
++++++..|+++..+..++..+...|++++|+.+++.+.+.
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-16 Score=160.63 Aligned_cols=324 Identities=11% Similarity=-0.018 Sum_probs=249.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCC
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGR 119 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 119 (511)
+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|...+++..+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 45667788999999999999999865 7888899999999999999999999998764 3 45689999999999999
Q ss_pred hhHHHHHHHHHHHCCC----------------------------CC-CHhHHHHHHHH----------------------
Q 010405 120 PKEALALFREMQSLDL----------------------------EP-NSAILVSLLSA---------------------- 148 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~----------------------------~p-~~~t~~~ll~~---------------------- 148 (511)
+++|+..|......+- .| +...+..+...
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9999876654432110 01 00000000000
Q ss_pred ----H----------HhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehH
Q 010405 149 ----C----------AQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYT 209 (511)
Q Consensus 149 ----~----------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~ 209 (511)
+ ...+++++|.+.|+.+++.+ .+.....++.+...|...|++++|+..|++..+ | +..+|.
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 369 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 0 11256788899999988765 233456788889999999999999999998765 3 345788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGR 288 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 288 (511)
.+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+ ..| +...+..+..++.+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHH
Confidence 88888999999999999999998753 23467888888899999999999999999987 334 46778888999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH-------HHHHHHHcCCch
Q 010405 289 AGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL-------LSNIYVETLKGE 359 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~ 359 (511)
.|++++|+..|++. ...| +...|+.+...+...|++++|+..+++++++.|.+...+.. ....+...|+++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999886 4445 46688888888999999999999999999988865433321 122334469999
Q ss_pred HHHHHHHHHHhCC
Q 010405 360 NAEEVRKTMRKRK 372 (511)
Q Consensus 360 ~A~~~~~~m~~~g 372 (511)
+|.+++++..+..
T Consensus 526 eA~~~~~kAl~l~ 538 (615)
T TIGR00990 526 EAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHhcC
Confidence 9999998877643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-15 Score=157.51 Aligned_cols=332 Identities=9% Similarity=-0.009 Sum_probs=247.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcC---CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDES---DDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 83 (511)
+...+..+...+.+.|++++|..+|++. .+.+...+..++..+...|++++|+..+++..+ | +.. +..+..++
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l 126 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVY 126 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 3445788888999999999999999874 345677788888889999999999999988864 3 444 77888888
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHH-----------------------------------
Q 010405 84 VRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALA----------------------------------- 125 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~----------------------------------- 125 (511)
...|+.++|...++++.+ | +...+..+...+...|..++|++
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 899999999999988764 3 44455566666666666555444
Q ss_pred -----------HHHHHHHC-CCCCCHh-HHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhc
Q 010405 126 -----------LFREMQSL-DLEPNSA-ILV----SLLSACAQLGALDYGNWVYSYIQKKCIK-LDSILCAALIDMYAKC 187 (511)
Q Consensus 126 -----------~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~ 187 (511)
.++.+.+. ...|+.. .+. ..+.++...|+.++|+..|+.+.+.+.+ |+ .....+..+|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhc
Confidence 34444322 1122221 111 1133456778999999999999987632 22 2223357889999
Q ss_pred CCHHHHHHHHHhcCCCCe-------eehHHHHHHHHHcCChHHHHHHHHHHHhCCC-----------CCCH---HHHHHH
Q 010405 188 GSIDLAMQVFHSYGDKDV-------SAYTSAIFGLAMNGHSIEAFELFENMKSKGI-----------SPDS---ISYIAV 246 (511)
Q Consensus 188 g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~t~~~l 246 (511)
|++++|+..|+++.+.+. ..+..+..++...|++++|..+++++..... .|+. ..+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 999999999998765321 2355566688999999999999999987521 2332 234556
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCch
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNA 324 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 324 (511)
...+...|+.++|+..++++.. ..+.+...+..+...+...|++++|++.+++. ...|+ ...+..+...+...|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 6788899999999999999987 34455788999999999999999999999987 55675 45666677788999999
Q ss_pred hHHHHHHHHHhhcCCCCchhH
Q 010405 325 EMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 325 ~~a~~~~~~~~~~~p~~~~~~ 345 (511)
++|+.+++++++..|+++.+.
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999987543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-14 Score=145.93 Aligned_cols=355 Identities=10% Similarity=0.030 Sum_probs=235.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhH-HHHH--HHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCH
Q 010405 16 SLIQFYSVCGRVRDARWVFDESDDLDVVS-WNSM--INGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSV 89 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~ 89 (511)
.++..+...|+.++|+..+++...|+... +..+ ...+...|++++|+++|+++.+ | +...+..++..|...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 77777777788888888888776554333 3333 3466677888888888888865 2 355666777778888888
Q ss_pred HHHHHHHhhCCCCCh--hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH------
Q 010405 90 DDACRVFNQMPKRSL--VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV------ 161 (511)
Q Consensus 90 ~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~------ 161 (511)
++|++.++++...+. ..+-.++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 888888888775433 333333333333555555888888887753 22455555555555554433333222
Q ss_pred ------------------------------------------HHHHHHc-C-CCccHHH-HHH---HHHHHHhcCCHHHH
Q 010405 162 ------------------------------------------YSYIQKK-C-IKLDSIL-CAA---LIDMYAKCGSIDLA 193 (511)
Q Consensus 162 ------------------------------------------~~~~~~~-~-~~~~~~~-~~~---li~~y~~~g~~~~A 193 (511)
++.+... + .|+.... ..+ .+-++.+.|+..++
T Consensus 232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 2222221 1 1111111 122 23445667888888
Q ss_pred HHHHHhcCCC--Cee--ehHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 194 MQVFHSYGDK--DVS--AYTSAIFGLAMNGHSIEAFELFENMKSKG-----ISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 194 ~~~~~~~~~~--~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
++.|+.+... .+. +-.++..+|...+++++|+.+|+++.... ..++......|..++...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888888753 223 34567788888889999999998886542 12233335677888888899999999888
Q ss_pred HchhhcCC----------CCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHH
Q 010405 265 SMFDVHGI----------KPE---LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 265 ~~~~~~~~----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
.+.+.... .|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 88762110 122 233455677788889999999888887 3334 67778888888888899999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.++.+..+.|++..+...++..+...|+|++|..+.+.+.+.
T Consensus 472 ~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 472 ELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 998888888888888888888888889999998888777653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-14 Score=146.81 Aligned_cols=349 Identities=13% Similarity=0.077 Sum_probs=269.5
Q ss_pred HHHhcCChHHHHHHHhcCCC--CCh-hHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHH---HHHHHhcCCHHHHH
Q 010405 20 FYSVCGRVRDARWVFDESDD--LDV-VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSI---LGGLVRFGSVDDAC 93 (511)
Q Consensus 20 ~~~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~ 93 (511)
...+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++...|+...+..+ ...|...|++++|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44588999999999998774 332 1233888889999999999999999997754444333 45788889999999
Q ss_pred HHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010405 94 RVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170 (511)
Q Consensus 94 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 170 (511)
++|+++.+ | |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+..
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 99999875 3 4567778889999999999999999999875 5666666555555555666766999999999985
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------------------------------
Q 010405 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD------------------------------------------------ 202 (511)
Q Consensus 171 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------------------------------ 202 (511)
|.+...+..++.+..+.|-...|.++...-+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 55677777788888777776666555443220
Q ss_pred -----CCe-eehH----HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC-
Q 010405 203 -----KDV-SAYT----SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG- 271 (511)
Q Consensus 203 -----~~~-~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~- 271 (511)
|.. ..|. -.+-++...|+..++++.|+.+...|.+....+-..+.++|...+.+++|..+|..+....+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 100 0111 12446777899999999999999888664556788899999999999999999999976332
Q ss_pred ---CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC-C-------------C--CHHH-HHHHHHHHHhcCchhHHHHHH
Q 010405 272 ---IKPELDHYACMVDLLGRAGLLEEAENFIASMPM-K-------------P--DNVI-WGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 272 ---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-------------p--~~~~-~~~ll~~~~~~g~~~~a~~~~ 331 (511)
.+++......|.-+|...+++++|..+++.+.. . | |-.. ...++..+.-.|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233455567899999999999999999988721 1 2 2222 233456688999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 332 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+++....|.|+.....++.++...|...+|++.++.....
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999776653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-13 Score=147.18 Aligned_cols=282 Identities=11% Similarity=0.047 Sum_probs=214.9
Q ss_pred HHhcCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHHHHCCC---hhHHHHH----------------------HHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK-R-----SLVSWVVLISGFAQNGR---PKEALAL----------------------FREMQ 131 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~ 131 (511)
..+.|+.++|.++|+.... + +...-+-++..|.+.+. ..+|+.+ +....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 3567888888888887654 1 22344466777777665 3344333 11111
Q ss_pred HC-CC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe
Q 010405 132 SL-DL-EP--NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV 205 (511)
Q Consensus 132 ~~-~~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~ 205 (511)
.. +. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 11 11 33 56677777777766 78888999888877663 4544444455556789999999999998764 444
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
..+..+...+.+.|+.++|...+++..... |+. ..+..+.......|++++|...+++..+ ..|+...+..+..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~ 617 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHH
Confidence 567777888899999999999999998764 433 3333444455567999999999999987 4577889999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 285 LLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
++.+.|++++|...+++. ...|+ ...+..+..++...|+.++|+..++++.+..|+++..+..++.+|...|++++|+
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 55664 5567777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 010405 363 EVRKTMRKRK 372 (511)
Q Consensus 363 ~~~~~m~~~g 372 (511)
..+++..+..
T Consensus 698 ~~l~~Al~l~ 707 (987)
T PRK09782 698 HYARLVIDDI 707 (987)
T ss_pred HHHHHHHhcC
Confidence 9999987644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-13 Score=144.57 Aligned_cols=339 Identities=10% Similarity=0.050 Sum_probs=256.4
Q ss_pred CChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCC---HHHH
Q 010405 25 GRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R----NDVSWNSILGGLVRFGS---VDDA 92 (511)
Q Consensus 25 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~---~~~A 92 (511)
+...+|...+..|-+. +.....-+.-...+.|+.++|.++|++... + +...-+-|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 5555666555555432 444444444456678888888888887764 1 22334466666766655 2222
Q ss_pred HHH-------------------------HhhCCC---C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 93 CRV-------------------------FNQMPK---R--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 93 ~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
..+ +..... + +...|..+..++.. +++++|+..|.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 222 111111 2 55678888888876 8999999988887765 4676555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHH---HHHHcC
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF---GLAMNG 219 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g 219 (511)
..+..++...|++++|...++.+... +|+...+..+..++.+.|+.++|.+.|+...+.+...++.... .....|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 55566667899999999999998665 4445556777888999999999999999887654444443333 333459
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
++++|+..+++..+. .|+...+..+..++.+.|+.++|...+.+..+ ..| +...+..+...+...|++++|++.
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999875 56788899999999999999999999999987 345 477888999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 299 IASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 299 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+++. ...| +...+..+..++...|++++|+..++++.+..|++..+.........+..+++.|.+.+++-...++
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9987 4556 5668889999999999999999999999999999999999999999999999999998877765444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-13 Score=125.67 Aligned_cols=204 Identities=13% Similarity=0.093 Sum_probs=163.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHH
Q 010405 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 226 (511)
...|++++|.+.+++.+...-......|| +.-.+-+.|++++|+..|-++.. .++.....+...|-...+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34578888888888888764333333333 33446778999999999877653 566677777888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK 305 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 305 (511)
++.+.... ++-|+.....|...|-+.|+..+|.+.+-.--+ -++.+..+...|..-|....-+++|+..|++. -++
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99776543 444677888888999999999999987765543 35667888888999999999999999999988 578
Q ss_pred CCHHHHHHHHHH-HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 306 PDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 306 p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
|+..-|..++.. +++.|++.+|..+++...+..|.+......|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999877 5788999999999999999999999999999998888775
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=142.90 Aligned_cols=256 Identities=16% Similarity=0.151 Sum_probs=111.6
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPNS-AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
.+...+.+.|++++|++++++......+|+. .-|..+...+...++.+.|++.++++.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4567778889999999988655444323444 34444555666788899999999988877533 56667777776 688
Q ss_pred CCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 188 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
+++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877643 466677888888999999999999999977543 34567778888888999999999999999
Q ss_pred HchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 265 SMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 265 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+..+ ..| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..|+|
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9987 345 4778888999999999999988887766 113456678889999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 342 DGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+.....++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-12 Score=128.36 Aligned_cols=312 Identities=14% Similarity=0.116 Sum_probs=207.4
Q ss_pred CChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 010405 56 GEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQM---PKRSLVSWVVLISGFAQNGRPKEALALFRE 129 (511)
Q Consensus 56 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (511)
|+.++|.+++.+..+ .+...|..|...|-..|+.+++...+-.. ...|...|-.+.....+.|.+++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666666666654 34456666666666666666666554332 234556666666666666667776666666
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH----HHHHHHHhcCCHHHHHHHHHhcCC--C
Q 010405 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA----ALIDMYAKCGSIDLAMQVFHSYGD--K 203 (511)
Q Consensus 130 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~~--~ 203 (511)
..+.. +++...+---...|-+.|+...|..-|.++.+...+.|..-.. ..+..|...++-+.|.+.++.... .
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 66653 3444444455556666666666666666666654322222222 223445555555666666665543 1
Q ss_pred ---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCC---------------------------CCCCHHHHHHHHHHHhcc
Q 010405 204 ---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKG---------------------------ISPDSISYIAVLSACSHL 253 (511)
Q Consensus 204 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~~~~~~ 253 (511)
+...++.++..|....+++.|......+.... +.++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 33456667777777777777777666665511 22222221 122234455
Q ss_pred CCHHHHHHHHHHchhhcCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCchhHHH
Q 010405 254 GWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 254 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
...+....+.....+ ..+.| ++..|.-+.++|...|++.+|+++|..+. ...+...|.-+..+|...|..+.|.
T Consensus 391 ~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 555555555555554 45334 47789999999999999999999999982 2236779999999999999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+.+++++...|++..+-..|...|-+.|+.++|.+++..+..
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999988763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=128.92 Aligned_cols=276 Identities=11% Similarity=-0.011 Sum_probs=214.8
Q ss_pred cCChHHHHHHHccCCCC--ChhHHHHH-HHHHHhcCCHHHHHHHHhhCCC--CChhHHH--HHHHHHHHCCChhHHHHHH
Q 010405 55 NGEILEGLKLFDKMPQR--NDVSWNSI-LGGLVRFGSVDDACRVFNQMPK--RSLVSWV--VLISGFAQNGRPKEALALF 127 (511)
Q Consensus 55 ~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 127 (511)
.|++++|.+.+....+. ++..+..+ .....+.|+.+.|...|.++.+ |+....- .....+...|++++|++.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 69999999988877653 23333333 3444789999999999999875 3332222 3366888999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS-------ILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 128 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+++.+.. +-+...+..+...+.+.|+++++.+++..+.+.+..++. .++..++....+..+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998865 346778888899999999999999999999987654322 23444555555566778888888887
Q ss_pred CC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 201 GD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 201 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
++ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHH
Confidence 65 46778888999999999999999999998874 4454222 33444556999999999999887 3344577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
.+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++...+
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999987 67799999999999999999999999999999774
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-13 Score=130.51 Aligned_cols=276 Identities=12% Similarity=0.007 Sum_probs=217.5
Q ss_pred CCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 87 GSVDDACRVFNQMPK--RSL-VSWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 87 g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
-+..+|...|.+++. +|. .....+..+|...+++++|.++|+...+.. ..-+...|++.+--+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 457889999999764 343 344567889999999999999999997742 11256777777755432 222333
Q ss_pred H-HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 162 Y-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
+ +.+.+. -+..+.+|-++.+.|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 3 223333 2556889999999999999999999999998863 5578888888899999999999999987653 3
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010405 238 PD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGT 313 (511)
Q Consensus 238 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 313 (511)
|. -..|..+...|.+.++++.|.-.|+.+.+ +.|. ......+...+-+.|+.++|+++++++ ..+| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 33 34566678889999999999999999986 6665 566778888999999999999999998 4444 4444444
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
-...+...++.++|++.++++.++.|++..+|..++..|.+.|+.+.|..-|.-+.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55667778999999999999999999999999999999999999999999887776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-12 Score=123.49 Aligned_cols=275 Identities=11% Similarity=0.055 Sum_probs=211.5
Q ss_pred cCCHHHHHHHHhhCCCC--Chh-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhcCCHHHHHH
Q 010405 86 FGSVDDACRVFNQMPKR--SLV-SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV--SLLSACAQLGALDYGNW 160 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 160 (511)
.|+++.|++.+...++. ++. .|-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999887653 233 3333344558999999999999999874 55654333 33667889999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-----------ehHHHHHHHHHcCChHHHHHHHH
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS-----------AYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
.++.+.+.. |-++.+...+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999886 557888999999999999999999999988763222 23333444444555666667777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-
Q 010405 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD- 307 (511)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~- 307 (511)
...+. .+.+......+..++...|+.++|..++....+ .+|+.... ++.+....++.+++.+.++.. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 344677888899999999999999999998876 34554222 333344569999999999887 45564
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+....++...|...+++++|.+.|+++.+..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4467778888999999999999999999999975 6788999999999999999999986643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-11 Score=109.98 Aligned_cols=334 Identities=14% Similarity=0.090 Sum_probs=239.2
Q ss_pred hcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhH
Q 010405 35 DESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMP----KRSLVS 106 (511)
Q Consensus 35 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 106 (511)
-+..+....+|.+||.++++-...+.|.++|++... -+..+||.+|.+-+-..+ .++..+|. .||..|
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT 275 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence 344455678899999999999999999999998875 467788888876543333 45555554 589999
Q ss_pred HHHHHHHHHHCCChhH----HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCC----Ccc
Q 010405 107 WVVLISGFAQNGRPKE----ALALFREMQSLDLEPNSAILVSLLSACAQLGALDY-GNWVYSYIQK----KCI----KLD 173 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~ 173 (511)
+|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+.+.++..+ +..+..++.. .-+ +.|
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 9999999999998876 46788899999999999999999999998888754 3444444433 112 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDK-----------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (511)
...+..-++.|....+.+-|.++-.-.... ...-|..+....++....+.-+.+|..|.-.-.-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 566777888888999999998887655431 123466777888889999999999999988778899999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC-C--------HHH-----HHHHHH-------h
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-L--------LEE-----AENFIA-------S 301 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~-------~ 301 (511)
...+++|....|.++-..+++..+.. +|-.-+.....-+...+++.. + +.. |..+++ +
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999998888888887 665444444444444444433 1 111 111111 1
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhc---CCCCc--hhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 302 M-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES---DQNHD--GRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 302 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+ ..+......+.++-.+.+.|..++|-+++..+.+. -|..+ .+..-|.+.-........|..+++-|...+.
T Consensus 515 ~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 515 QRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1 12234455666667778899999999999888652 23332 2233555556667788889999988876554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-12 Score=126.07 Aligned_cols=360 Identities=11% Similarity=0.086 Sum_probs=264.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCChHHHHHHHccCCC--CCh--hHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD------VVSWNSMINGYVRNGEILEGLKLFDKMPQ--RND--VSWN 77 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~ 77 (511)
..|+++.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++++|...|.+..+ +|. ..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3578899999999999999999999887665322 34688899999999999999999988876 333 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCC----ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNG----RPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
.|..+|.+.|+++.|...|++..+ | +..+-..|...|+..+ ..++|..++.+....- +.|...|..+...+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 678999999999999999999864 3 4567777777787775 4567777777766653 457778887777765
Q ss_pred hcCCHHHHHHHHHHH----HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CCee------ehHHHHH
Q 010405 151 QLGALDYGNWVYSYI----QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-------KDVS------AYTSAIF 213 (511)
Q Consensus 151 ~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~ 213 (511)
...-+ .+..++..+ ...+-++.+...|.+...+...|++++|...|..... +|.. +--.+..
T Consensus 426 ~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 54433 336555544 3456567888999999999999999999999987653 2221 1223444
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (511)
.+-..++.+.|.+.|..+... .|+- ..|..++......+...+|..+++.... ....++..++.+...+.+...+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhh
Confidence 555677889999999998875 4543 3455555444456788899999988886 3444555666777788888888
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHHHH------------hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 293 EEAENFIASM----PMKPDNVIWGTLLGACR------------VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 293 ~~A~~~~~~~----~~~p~~~~~~~ll~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
..|.+-|+.+ ...+|..+.-+|.+.|. ..+..++|+++|.++++.+|.|..+-+.++-+++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 8887755544 23356666656655442 2334678888888888888888777778888888999
Q ss_pred CchHHHHHHHHHHhCCC
Q 010405 357 KGENAEEVRKTMRKRKI 373 (511)
Q Consensus 357 ~~~~A~~~~~~m~~~g~ 373 (511)
++.+|..+|.+.++...
T Consensus 661 ~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS 677 (1018)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999988887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.9e-11 Score=110.09 Aligned_cols=326 Identities=11% Similarity=0.048 Sum_probs=236.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-hHHHHHHHHHHHCCC
Q 010405 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL-VSWVVLISGFAQNGR 119 (511)
Q Consensus 41 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~ 119 (511)
|...+-...-.+.+.|....|+..|......-+..|.+-+....-..+.+.+..+-..++..+. ..=--+..+|....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 4333333334455666677777777766655555666665555555555555555544443221 111224456666668
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHH-HHHH
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI--KLDSILCAALIDMYAKCGSIDL-AMQV 196 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~-A~~~ 196 (511)
.+++++-.+.....|++.+...-+....+.-...++++|+.+|+.+.+... -.|..+|..++-.-..+.++.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 888888888888888766665555556666778899999999999988731 1245666665533222222221 2222
Q ss_pred HHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH
Q 010405 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276 (511)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 276 (511)
+ .+.+--+.|...+..-|.-.++.++|+..|++.++.+.+ ....|+.+..-|....+...|++-++.+.+ --+.|-
T Consensus 323 ~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~Dy 398 (559)
T KOG1155|consen 323 S-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDY 398 (559)
T ss_pred H-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhH
Confidence 2 233334556677788888999999999999999886422 456788888889999999999999999987 223467
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|+++......+...+..|+++|-+
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 88999999999999999999999998 5666 788999999999999999999999999999777778999999999999
Q ss_pred cCCchHHHHHHHHHHh
Q 010405 355 TLKGENAEEVRKTMRK 370 (511)
Q Consensus 355 ~g~~~~A~~~~~~m~~ 370 (511)
.++.++|...+++-.+
T Consensus 479 l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999999987765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-11 Score=118.96 Aligned_cols=280 Identities=11% Similarity=-0.022 Sum_probs=146.6
Q ss_pred HcCChHHHHHHHccCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh--hHHHHHHHHHHHCCChhHHHHH
Q 010405 54 RNGEILEGLKLFDKMPQ--RND-VSWNSILGGLVRFGSVDDACRVFNQMPK--RSL--VSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 54 ~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~ 126 (511)
..|+++.|.+.+.+..+ |+. ..+-....++.+.|+.+.|...|.+..+ |+. ...-.....+.+.|++++|++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 46777777777766554 322 2223334556666777777777766432 222 2333346666677777777777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH---H----hcCCHHHHHHHHHh
Q 010405 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY---A----KCGSIDLAMQVFHS 199 (511)
Q Consensus 127 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~~~~ 199 (511)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77776653 2245566667777777777777777777777765432222211111111 1 11222333344444
Q ss_pred cCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH--H-HHHHHHHhccCCHHHHHHHHHHchhhcCCC
Q 010405 200 YGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS--Y-IAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273 (511)
Q Consensus 200 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (511)
.++ .+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+...-.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 432 255556666666666666666666666666542 22221 1 111111223355555555555555421111
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIAS--M-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113444555566666666666666662 2 3445555555555556666666666666665544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-14 Score=130.28 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=106.0
Q ss_pred HHHHHHHhcCChHHHHHHHhc-CC----CCChhHHHHHHHHHHHcCChHHHHHHHccCCCC---ChhHHHHHHHHHHhcC
Q 010405 16 SLIQFYSVCGRVRDARWVFDE-SD----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR---NDVSWNSILGGLVRFG 87 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g 87 (511)
.+...+.+.|++++|++++++ .. +.|+.-|..+.......++++.|++.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 567888899999999999953 22 335666777777788899999999999999863 34456667766 6889
Q ss_pred CHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 88 SVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 88 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
++++|.+++++.-+ ++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998877643 466778888889999999999999999877543 345777788888889999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 010405 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG---DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241 (511)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (511)
+++.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 99874 4467788889999999999998777776554 3567778888899999999999999999887742 33677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
....+..++...|+.++|.++..++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 777888888899999999888777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-11 Score=124.84 Aligned_cols=356 Identities=15% Similarity=0.073 Sum_probs=215.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--CC--hhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhc
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESDD--LD--VVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRF 86 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~ 86 (511)
|=.+.++|-..|++++|...|.+..+ +| +..+--+...+.+.|+.+.+...|+...+ | +..+...|...|+..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 44455666666666666666654331 11 23344455556666666666666665543 2 233333344444433
Q ss_pred C----CHHHHHHHHhhCCC-----------------------------------------CChhHHHHHHHHHHHCCChh
Q 010405 87 G----SVDDACRVFNQMPK-----------------------------------------RSLVSWVVLISGFAQNGRPK 121 (511)
Q Consensus 87 g----~~~~A~~~~~~~~~-----------------------------------------~~~~~~~~li~~~~~~g~~~ 121 (511)
+ ..+.|..+..+..+ ..+...|.+...+...|++.
T Consensus 390 ~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 2 23334433333322 23344455555555555555
Q ss_pred HHHHHHHHHHHC---CCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 122 EALALFREMQSL---DLEPNS------AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 122 ~A~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
+|...|...... ...+|. .+-..+....-..++.+.|.+.|..+.+.. |.-+..|--|+-+....+...+
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHH
Confidence 555555554432 111222 122233344444455555555555555542 2122223223322233355666
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc------------cCCH
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSH------------LGWV 256 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~------------~g~~ 256 (511)
|...+..... .++..|..+...+.....+..|.+-|...... ...+|..+..+|...|.. .+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 6666666543 46666777777788888887787766666543 223566666667665543 2456
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP--MKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
+.|+++|.+..+ .-+-|...-+-+.-.++..|++.+|.++|.+.. ...+..+|-.+...|...|++..|+++|+..
T Consensus 629 ~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888876 334567777888889999999999999998872 2235567999999999999999999999999
Q ss_pred hh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 335 IE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 335 ~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
.+ ...+++.+...|+.++.+.|++.+|.+.+.......
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 88 334567788899999999999999999887666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-11 Score=120.04 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=202.7
Q ss_pred hcCChHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHccCCC--CChh--HHHHHHHHHHhcCCHHHHHHH
Q 010405 23 VCGRVRDARWVFDESDD--LD-VVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDV--SWNSILGGLVRFGSVDDACRV 95 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~--~~~~li~~~~~~g~~~~A~~~ 95 (511)
..|+++.|.+.+.+..+ |+ ...+-....++.+.|+++.|.+.|.+..+ |+.. ..-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 46999999999987653 33 23344455678889999999999998754 4443 344457888999999999999
Q ss_pred HhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH-HHHHHH---HhcCCHHHHHHHHHHHHHc
Q 010405 96 FNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV-SLLSAC---AQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 96 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~~---~~~~~~~~a~~~~~~~~~~ 168 (511)
++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+..+.+.+.+..+.+.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999875 3 5678889999999999999999999999998754 333332 111222 2222333334455555444
Q ss_pred CC---CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeee---hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 010405 169 CI---KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSA---YTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 169 ~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
.. +.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+++.+++..+. .|+.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCC
Confidence 21 23788999999999999999999999998876 44332 122222334457788899999888764 4444
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 241 ---ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 241 ---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
....++...|.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556788899999999999999995433 346799888999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-12 Score=124.53 Aligned_cols=277 Identities=13% Similarity=0.074 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHCCChhHHHHH
Q 010405 56 GEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDDACRVFNQMPK------RSLVSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 56 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 126 (511)
-+.++|+.+|.+.+. + ...+...+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345889999998654 2 346667788999999999999999999874 367788888876543 223333
Q ss_pred H-HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCe
Q 010405 127 F-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205 (511)
Q Consensus 127 ~-~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 205 (511)
+ +.+... -+-.+.||-.+.++|.-+++.+.|++.|+++++.. +....+|+.+..-+.....+|.|...|+.....|.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 233332 24567899999999999999999999999999864 33788999999999999999999999999988777
Q ss_pred eehHH---HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHH
Q 010405 206 SAYTS---AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYAC 281 (511)
Q Consensus 206 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 281 (511)
.-||+ +...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|+++++++.. +.| |+-.--.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHH
Confidence 66555 577899999999999999998875422 566677778888999999999999999976 333 3444445
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 282 MVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.+..+...+++++|+..++++ .+.|+.. .+..+...|.+.|+.+.|+.-|..+.+++|.-.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 566778899999999999998 4567655 566666779999999999999999999999643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-10 Score=110.02 Aligned_cols=362 Identities=11% Similarity=0.050 Sum_probs=292.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHh
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVR 85 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 85 (511)
.+|+.-...|.+.+.++-|+.+|.... +.+...|...+..=-..|..++-..+|++... .....|-.....+-.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 456666777778888888888887544 45667788887777778888888888888764 345566666677778
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
.|++..|+.++.+..+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|.--++.---.++.++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8999999999888754 3557899999999999999999999998876 4677777777777777789999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (511)
+..++. ++.-...|-.+...+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-.|..++++.+-.+.+ |
T Consensus 675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~ 752 (913)
T KOG0495|consen 675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-N 752 (913)
T ss_pred HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-c
Confidence 999887 455567888999999999999999999987665 4 4455777777777788999999999998877544 7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 319 (511)
...|...++.=.+.|+.++|..+..+..+ ..+.+...|..-|.+..+.++-....+.+++-. .|+...-++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 88899999999999999999999999887 456667788888888888888777777777654 35555666777788
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEE
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 383 (511)
....++.|.+.|.++++.+|++..+|..+...+...|.-++-.++++...... |..|..|..
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~a 890 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHH
Confidence 88899999999999999999999999999999999999999999998776533 445556643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-10 Score=105.62 Aligned_cols=353 Identities=12% Similarity=0.062 Sum_probs=245.6
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChh-HHHHHHHHHHhc
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV-SWNSILGGLVRF 86 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~ 86 (511)
.-|++.+=...-.+-+.|....|++.|-.....-+..|.+-+....-.-+.+.+..+-......+.. .=--+..+|-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3444444444455667788899999998766443444444333322223333333333333322111 112234556666
Q ss_pred CCHHHHHHHHhhCCC---CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 87 GSVDDACRVFNQMPK---RS-LVSWVVLISGFAQNGRPKEALALFREMQSLDL--EPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 87 g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
.+.+++..-.+.... ++ ...-+....+.-...++++|+.+|+++.+.+. --|..+|+.++-+-.....+.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs---- 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS---- 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH----
Confidence 677777766655543 22 22333344455677899999999999988731 126678888875543322221
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
++.+-.-.=-.-.+.|+..+.+-|+-.++.++|...|++..+- ...+|+.|..-|....+...|++-++...+.. +
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 1111111101223557788899999999999999999998763 45679999999999999999999999998864 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 010405 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTL 314 (511)
Q Consensus 238 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 314 (511)
-|-..|-.|.++|.-.+...-|+-+|++..+ ..| |...|.+|.+.|.+.+++++|++-|.+. .-+.+...+..|
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 3778999999999999999999999999986 455 6899999999999999999999999987 223355788999
Q ss_pred HHHHHhcCchhHHHHHHHHHhh-------cCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 315 LGACRVHRNAEMGQRIGNMLIE-------SDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
...+-+.++.++|.+.+++-++ ..|....+..-|+.-+.+.+++++|.......
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999999887 23322334446888899999999998866544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-10 Score=107.53 Aligned_cols=353 Identities=12% Similarity=0.117 Sum_probs=234.7
Q ss_pred cCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHh
Q 010405 24 CGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RN-DVSWNSILGGLVRFGSVDDACRVFN 97 (511)
Q Consensus 24 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~ 97 (511)
++++..|+.+|++.. .++...|---+..=.++..+..|..++++... |- ...|-..+-+=-..|++..|.++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 355666777777544 34566676667776777777777777766643 21 1234444444455667777777776
Q ss_pred hCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-Ccc
Q 010405 98 QMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CI-KLD 173 (511)
Q Consensus 98 ~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~ 173 (511)
+-. +|+..+|++.|..=.+....+.|..+|++..- +.|+..+|.-....=.+.|+...+..+++.+++. |- ..+
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 644 46666777777776677777777777766654 3466666666666666666666666666666553 10 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhc--------------------------------------------CCC---Cee
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSY--------------------------------------------GDK---DVS 206 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~--------------------------------------------~~~---~~~ 206 (511)
...+.+....-.++..++.|.-+|+-. ... |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 223333333333344444444443321 112 334
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHchhhcCCCCCH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI-------SYIAVLSAC---SHLGWVEKGFYYFHSMFDVHGIKPEL 276 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~p~~ 276 (511)
+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=.+| ....+++.+.++|+...+ -++...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 5666666666779999999999998765 555321 222221222 346888999999999887 344456
Q ss_pred hHHHHHHHHH----HHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 277 DHYACMVDLL----GRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 277 ~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.|+.-+--+| .++.++..|.+++... |.-|...++...|..-.+.++++....++++.++..|.+..+|...+..
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 6666555444 4788999999999776 8889999999999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010405 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
-...|++|.|..+|+..........|..-|
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999888766544455444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=109.49 Aligned_cols=349 Identities=14% Similarity=0.067 Sum_probs=237.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHccCCCCChh---HHHHHHHHHHhcCC
Q 010405 15 NSLIQFYSVCGRVRDARWVFDESD--DLD-VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV---SWNSILGGLVRFGS 88 (511)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~ 88 (511)
....+-|.+.|++++|++.+.+.. .|| ++-|.....+|...|++++..+.-.+..+-++. .+.--.+++-..|+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 344566778899999999999765 567 788999999999999999988877776653322 12222223333333
Q ss_pred HHHHH----------------------HHHhhC---------C---C---CChhHHHHHHHHHHH---------------
Q 010405 89 VDDAC----------------------RVFNQM---------P---K---RSLVSWVVLISGFAQ--------------- 116 (511)
Q Consensus 89 ~~~A~----------------------~~~~~~---------~---~---~~~~~~~~li~~~~~--------------- 116 (511)
+++|+ +++.+. . . |+....++....|..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 33322 222211 1 1 122112222111110
Q ss_pred ----------CC---ChhHHHHHHHHHHH---CCCCCC---------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010405 117 ----------NG---RPKEALALFREMQS---LDLEPN---------SAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171 (511)
Q Consensus 117 ----------~g---~~~~A~~~~~~m~~---~~~~p~---------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 171 (511)
.+ .+.+|.+.+.+-.. .....+ ..+......-+.-.|+.-.+.+-|+..++....
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 01 12222222211100 001111 112222222234567888899999999887533
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVL 247 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 247 (511)
+...|--+..+|....+.++..+.|+...+ .|..+|..-...+.-.+++++|..-|++.+.. .| +...|.-+-
T Consensus 359 -~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 359 -FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLC 435 (606)
T ss_pred -cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHH
Confidence 344477778889999999999999998765 46778888888888899999999999998874 44 455677776
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHH
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD---------NVIWGTLLGA 317 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~ 317 (511)
.+..+.+.++++...|++.++ .++.-+++|+.....+..++++++|.+.|+.. .+.|+ +.+-.+++-.
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 677788999999999999998 56667889999999999999999999999876 44443 2222233322
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
-. .+++..|+.+++++.+++|....+|..|+..-.+.|+.++|+++|++-.
T Consensus 514 qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 514 QW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 3899999999999999999999999999999999999999999998654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-10 Score=103.07 Aligned_cols=325 Identities=17% Similarity=0.195 Sum_probs=232.7
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHccCC----CCChhHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD----DLDVVSWNSMINGYVRNGEILEGLKLFDKMP----QRNDVSWNSI 79 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~l 79 (511)
+-...++..+|.+.+|.-..+.|++++.+-. +-+..++|.+|.+-.-... .++..+|. .||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 3456889999999999999999999998765 4578899999977544333 45555553 5999999999
Q ss_pred HHHHHhcCCHHHHHHHHh----hCC----CCChhHHHHHHHHHHHCCChhH-HHHHHHHHHHC----CCC---C-CHhHH
Q 010405 80 LGGLVRFGSVDDACRVFN----QMP----KRSLVSWVVLISGFAQNGRPKE-ALALFREMQSL----DLE---P-NSAIL 142 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~~~---p-~~~t~ 142 (511)
+++.++.|+++.|++.+- +|. +|...+|..+|..+.+.+++.+ |..+..+.+.. .++ | |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999999988776554 443 5888999999999999988865 44455555432 222 2 45667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKC----IKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSA 211 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~l 211 (511)
...+..|.+..+.+.|.+++..+.... ++|+ ...|..+..+.+....++.-...|+.|.. |+..+-..+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 888999999999999999988776432 2333 34567788888889999999999998875 566666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CH--------H-----HHHHHH-------HHchhhc
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG-WV--------E-----KGFYYF-------HSMFDVH 270 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~--------~-----~a~~~~-------~~~~~~~ 270 (511)
+.+....|.++-.-+++..++..|..-+...-.-++.-+++.. .. . -|..++ .++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--- 516 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--- 516 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence 8888888888888888888887775544444444444444332 10 0 011111 1222
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASM-------PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 271 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
.........++..-.+.|.|+.++|.+++.-+ +..|..-...-++......+++..|..+++-+...+-
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23344557888899999999999999988655 3334444444566677788889999999988876443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.1e-11 Score=104.50 Aligned_cols=259 Identities=15% Similarity=0.126 Sum_probs=166.3
Q ss_pred cCChHHHHHHHccCCCCChhHH---HHHHHHHHhcCCHHHHHHHHhhCCC-CCh------hHHHHHHHHHHHCCChhHHH
Q 010405 55 NGEILEGLKLFDKMPQRNDVSW---NSILGGLVRFGSVDDACRVFNQMPK-RSL------VSWVVLISGFAQNGRPKEAL 124 (511)
Q Consensus 55 ~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~A~ 124 (511)
+.+.++|.++|-+|.+-|..++ -+|.+.|-+.|..|.|.++...+.+ ||. .+.-.|..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 5678889999988887665554 4677888888999999998888754 443 24456777788888999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 125 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
++|..+.+.+ .--..+...|+..|-...+|++|+.+-.++.+.+-.+. ...|--|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9998887754 23455677888888888888888888888887764433 223444555555566677777777665
Q ss_pred CCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 201 GDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 201 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
.+. .+.+--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.+ ..+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCcc
Confidence 542 22233344455666677777777777766654333344555666666777777777666666655 223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFI-ASMPMKPDNVIWGTLLGA 317 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~ 317 (511)
.-..+.+......-.+.|...+ +.+..+|+...+..|+..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3444444444444444444433 333455666666555554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-11 Score=112.12 Aligned_cols=256 Identities=11% Similarity=0.050 Sum_probs=181.0
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA--CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
-|.++|+++.|++++.-+.+.+-+.-...-+.|-.. ...-.++..|.++-+..+... ..+....+.-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 367788888888888777665433222222222222 222345666666666665442 22333333334444567999
Q ss_pred HHHHHHHHhcCCCCeeehHHHH---HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 191 DLAMQVFHSYGDKDVSAYTSAI---FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
++|.+.|++....|...-.+|. ..+-..|+.++|++.|-++... +.-+......+...|....+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999887776544443 3466789999999999887653 23356677778888999999999999998886
Q ss_pred hhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
. -++.|+....-|.+.|-+.|+-.+|.+..-+- ..-| +..+..-|..-|....-.++++..|+++.-+.|+...-.
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 5 45667899999999999999999999875443 3333 444544466667777788999999999999999765444
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 346 ILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 346 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..++.++.+.|++..|..+++....+-
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 556667788999999999999887643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-10 Score=114.83 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=258.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccC---CCCChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKM---PQRNDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~ 90 (511)
..+.....|++++|.+++.++. +.+...|.+|...|-+.|+.++++..+-.+ ...|...|..+.....+.|+++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3444445599999999999876 456788999999999999999999876544 3457788999999999999999
Q ss_pred HHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH----HHHHHHHHhcCCHHHHHHHHH
Q 010405 91 DACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL----VSLLSACAQLGALDYGNWVYS 163 (511)
Q Consensus 91 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~ 163 (511)
.|.-.|.+..+. +...+---+..|-+.|+...|+..|.++.+...+.|..-+ -.++..+...++-+.|.++++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998763 3344445577899999999999999999887432233323 334555666777788888888
Q ss_pred HHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------------------CCeeehHH----HH
Q 010405 164 YIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--------------------------KDVSAYTS----AI 212 (511)
Q Consensus 164 ~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~----li 212 (511)
.....+ -..+...++.++..|.+...++.|......+.. ++..+|.. +.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 777632 234556788899999999999999877765532 11122222 22
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGI--SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 290 (511)
-++......+....+..-.....+ .-+...|.-+..++...|.+.+|..+|..+.. ....-+...|-.+...|-..|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHh
Confidence 233333333333333333444443 33456788899999999999999999999987 333344778999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCC---------CCchhHHHHHHHHHHcCCch
Q 010405 291 LLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQ---------NHDGRYILLSNIYVETLKGE 359 (511)
Q Consensus 291 ~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~ 359 (511)
..++|.+.|+.. ...|+.. .--+|...+...|+.++|.++++.+..-++ .+..........|...|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999987 5556443 445566778999999999999998764221 12345567788899999999
Q ss_pred HHHHHHHHHHhC
Q 010405 360 NAEEVRKTMRKR 371 (511)
Q Consensus 360 ~A~~~~~~m~~~ 371 (511)
+-..+-..|...
T Consensus 544 ~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 544 EFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHH
Confidence 877777666553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=123.72 Aligned_cols=265 Identities=14% Similarity=0.173 Sum_probs=195.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 010405 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204 (511)
Q Consensus 125 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 204 (511)
.++..+...|+.|+..||..++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999998888889999999999998888887775 678
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
..+|+.|..+|.++|+... ++..++ -...+...++..|.-..-..++..+.-..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8899999999999999865 333333 1223445566667666666666665432345566443 455
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH-RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
...-.|.++.+.+++..+|...-......++.-+... ..+++-....+...+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 5666788999999999886432111121234444433 344444455555554 45 56899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccc
Q 010405 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429 (511)
Q Consensus 364 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ 429 (511)
++.+|+++|++..+..+|..+-+ .. ...-++.++..|++.|+.|+.+|..-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~-------~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------IN-------AAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Cc-------cchHHHHHHHHHHHhcCCCCcchhHH
Confidence 99999999999999999986533 11 12234467889999999999987543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-10 Score=105.04 Aligned_cols=196 Identities=12% Similarity=0.026 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
...+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 34555566666666666666666665543 233455666666777777777777777776643 22445566667777
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
...|++++|...+....+....+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 7788888888888887762222233456677788888888888888888776 3334 4557777788888899999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..++++.+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888787778888888889999999999988877754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-10 Score=105.19 Aligned_cols=261 Identities=13% Similarity=-0.014 Sum_probs=211.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
++.....-..-+...+++.+.+++++...+.. ++....+..-|.++...|+..+-..+=.++++. .|..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44455556677888999999999999988764 566666666677888889888877777778776 4667889999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGDKD---VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+..+.--|...++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999876533 457999999999999999999998887653 111222233344568889999999
Q ss_pred HHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCchhHHHH
Q 010405 260 FYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASMP--------MKP-DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
.++|.+... +.| |+...+-+.-.....+.+.+|..+|+..- ..+ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999875 545 57778888877888889999999987751 111 34567888899999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.+++++.+.|.++.+|.+++-.|...|+++.|.+.|.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-09 Score=100.18 Aligned_cols=261 Identities=11% Similarity=0.044 Sum_probs=212.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..+....++++++..- +-....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 46777777788888888888888888775 23355667666666677788999999999998873 44566777777888
Q ss_pred HhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
...|++..|+.++....+. +...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-...++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 8899999999999887652 445688888888899999999999998876 46677777666666667899999999
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
++++..+. ++.-...|..+.+.+-+.++++.|.+.|..- ..-|+ ...|-.|...--+.|++.+|..++++..-.+|
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 99999872 3333678889999999999999999988764 44464 55788887888888999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 340 NHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.+...|...+.+-.+.|+.+.|..+..+..+.
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999888766553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-10 Score=111.55 Aligned_cols=238 Identities=17% Similarity=0.153 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CC
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL-----D-LEPNSAI-LVSLLSACAQLGALDYGNWVYSYIQKK-----C--IK 171 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 171 (511)
+...+...|...|++++|..+++..++. | ..|...+ ...+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444778888888888888888776553 1 1233322 233566677777777777777776652 2 11
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDS-ISYIAVLSA 249 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~t~~~ll~~ 249 (511)
.-..+++.|..+|.+.|++++|...++ .|++++++. .|. .|.. .-++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e------------------------~Al~I~~~~--~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCE------------------------RALEIYEKL--LGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHH------------------------HHHHHHHHh--hccChHHHHHHHHHHHHH
Confidence 123455666667777777777777665 556666652 222 2222 245566677
Q ss_pred HhccCCHHHHHHHHHHchhhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHG--IKPE----LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPD-NVIWGT 313 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 313 (511)
|...+.+++|..++....+.+. +.++ ..+++.|...|...|++++|.++++++ +..+. ...++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888999999988887765432 2222 467899999999999999999999876 11222 346677
Q ss_pred HHHHHHhcCchhHHHHHHHHHhh----cCC---CCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIE----SDQ---NHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
|...|.+.+++++|.++|.+... ..| +...+|..|+.+|.+.|++++|.++.+...
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88889999999999999988776 344 445678899999999999999999998775
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-10 Score=106.32 Aligned_cols=283 Identities=15% Similarity=0.130 Sum_probs=206.6
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHH
Q 010405 6 SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSI 79 (511)
Q Consensus 6 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~l 79 (511)
|+..|+.+...-.+-+-.++++.+..++++...+ +....+..-|.++...|+..+-..+=.++.+ ..+.+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 4455666677777777788899999999887663 4555677778888888888777666666654 356789888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKRSL---VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 156 (511)
.--|.-.|+.++|++.|.+...-|. ..|-.....|+-.|..++|+..|...-+. ++-....+.-+.--|.+.++++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 8888888999999999988765433 57999999999999999999988776554 2334445556666788889999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
.|.+.|.++.... |.|+.+.+-+.-++...+.+.+|..+|+... ...........
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l------------------------~~ik~~~~e~~ 452 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL------------------------EVIKSVLNEKI 452 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH------------------------HHhhhcccccc
Confidence 9999999888874 6678888888877777888888888877432 22222222211
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 010405 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLL 315 (511)
Q Consensus 237 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 315 (511)
--..+++.|..+|.+.+..++|+..|++... -.+-+..++.++.-.|...|+++.|.+.|.+. .++||..+...++
T Consensus 453 -~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 453 -FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred -chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 2345677777788888888888888877775 23445677777777788888888888887765 6677776666666
Q ss_pred HH
Q 010405 316 GA 317 (511)
Q Consensus 316 ~~ 317 (511)
+.
T Consensus 530 ~~ 531 (611)
T KOG1173|consen 530 KL 531 (611)
T ss_pred HH
Confidence 53
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-10 Score=115.12 Aligned_cols=257 Identities=14% Similarity=0.037 Sum_probs=186.5
Q ss_pred ChhHHHHHHHHHHH-----CCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQ-----NGRPKEALALFREMQSLDLEP-NSAILVSLLSACAQ---------LGALDYGNWVYSYIQK 167 (511)
Q Consensus 103 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 167 (511)
+...|...+.+-.. .+..++|+++|++..+. .| +...|..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 23467899999999875 44 44556666555432 2347899999999998
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-ISY 243 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 243 (511)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 75 45778888999999999999999999998765 3 44578888999999999999999999998864 442 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHh
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVI-WGTLLGACRV 320 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~ 320 (511)
..++..+...|++++|...++++.+. .+| ++..+..+..+|...|++++|...++++ +..|+... ++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998762 234 4556778888999999999999999887 44565444 4444455677
Q ss_pred cCchhHHHHHHHHHhh---cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 321 HRNAEMGQRIGNMLIE---SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
.| +.|...++++.+ ..|.++. .+...|.-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 478888888777 3443332 366677777887777766 7777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-10 Score=102.80 Aligned_cols=230 Identities=11% Similarity=0.084 Sum_probs=158.0
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||..|-.+|.+..+++.|..++.+-++. +|.|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777666654 455666777777777777777777777776665 345555555566666666
Q ss_pred CCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 188 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
++.++|.++|+...+ -++.+...+..+|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-.+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777766554 24455555556666666777777777777666654 55566666666666666655555554
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
+... . .-+.++ -..+|..|-......||+..|.+.|+-.+..+|++...
T Consensus 383 RAls-t------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-T------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-h------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 4433 0 111111 23457667667777899999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 345 YILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 345 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
++.|+..-.+.|++++|..+++......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999998887644
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.1e-09 Score=95.46 Aligned_cols=275 Identities=14% Similarity=0.080 Sum_probs=123.8
Q ss_pred cCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHCCChhHHHHHH
Q 010405 55 NGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKR----SLVSWVVLISGFAQNGRPKEALALF 127 (511)
Q Consensus 55 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 127 (511)
.|++.+|.++..+..+ .....|..-..+--+.|+.+.|-..+.+..++ +....-+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555555555544432 11222222233344455555555555554432 2233444445555555555555555
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS-------ILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 128 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
.++...+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555443 223344445555555555555555555555555443221 23333333333333333333344444
Q ss_pred CC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 201 GD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 201 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+.-.+..+..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 32 233333444444455555555555555555444444311 11123344444444444443333222222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.+..|...|.+.+.|.+|...|+.. ...|+..+|+.+..++.+.|++++|.+..++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444555555555555555555443 4444555555555555555555555555544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-09 Score=96.44 Aligned_cols=287 Identities=13% Similarity=0.105 Sum_probs=208.4
Q ss_pred cCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHhcCCHH
Q 010405 86 FGSVDDACRVFNQMPKRSLV---SWVVLISGFAQNGRPKEALALFREMQSLDLEPNS------AILVSLLSACAQLGALD 156 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~ 156 (511)
..+.++|.++|-+|.+.|.. +.-+|.+.|-+.|..++|+.+-+.+.++ ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 47889999999998876554 4557888999999999999998888764 332 34455667788889999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehH--------HHHHHHHHcCChHHHHHHH
Q 010405 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT--------SAIFGLAMNGHSIEAFELF 228 (511)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~--------~li~~~~~~g~~~~A~~~~ 228 (511)
.|+.+|..+.+.+ ..-.....-|+..|-+..+|++|+++-+++.+-+...++ -+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999998764 234556777899999999999999998877654444433 3444445567889999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 010405 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD 307 (511)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 307 (511)
.+..+.+.+ ....=..+.+.....|+++.|.+.++...+ .+..--..+...|..+|...|+.++...++.++ ...+.
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 998876433 222223456678889999999999999987 443333677888899999999999999988776 44455
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH---HcCCchHHHHHHHHHHhCCCccCCce
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV---ETLKGENAEEVRKTMRKRKIKRAPGC 379 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~ 379 (511)
...-..+...-....-.+.|.....+-+...|. ...+..|+.... ..|.+.+-..+++.|...-++..|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555555555555555577788777777777885 455666666543 33557778888888877666655543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-09 Score=95.55 Aligned_cols=275 Identities=13% Similarity=0.101 Sum_probs=207.9
Q ss_pred cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
.|++..|+++..+-.+. ....|..-+.+--+.|+.+.|-.++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 69999999999886542 345566666777888999999999999877533455555666667788899999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-----------ehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS-----------AYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
.++.+.+ +-++.+......+|.+.|++.....+...+.+.... +|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 557788899999999999999999999998874332 4666666555555555555566665
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh----CCCCCC
Q 010405 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS----MPMKPD 307 (511)
Q Consensus 232 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~p~ 307 (511)
..+ .+-+...-.+++.-+...|+.++|.++..+..+ .+..|+. +..-...+-++.+.-++..+. .|..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 433 344555566777788899999999999998887 5666661 122233445555554444443 34444
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+.+|...|.+++.+.+|...|+.+.+..|. ...|..++.+|.+.|+..+|.+++++-.-
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67888999999999999999999999999985 58999999999999999999999987653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-12 Score=83.43 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-12 Score=82.93 Aligned_cols=50 Identities=36% Similarity=0.614 Sum_probs=45.3
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-09 Score=98.04 Aligned_cols=192 Identities=13% Similarity=0.064 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3567777777888888888888887776643 3345666677777777777777777777777654 3345566666666
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDK-----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
|...|++++|.+.|++.... ....+..+...+...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777666665431 11234444444555555555555555544432 1123334444444445555555
Q ss_pred HHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
|...+++..+. .+.+...+..++..+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555544441 12223333344444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=111.69 Aligned_cols=241 Identities=14% Similarity=0.020 Sum_probs=171.9
Q ss_pred CCHHHHHHHHhhCCCC---ChhHHHHHHHHHH---------HCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 010405 87 GSVDDACRVFNQMPKR---SLVSWVVLISGFA---------QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 154 (511)
+++++|...|++..+. +...|..+..+|. ..+++++|...+++..+.+ +-+..++..+..++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4477899999887653 3355666665544 2345789999999998864 3467788888888899999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe-eehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV-SAYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
+++|...++++++.+ |.+...+..+...|...|++++|...|++..+ |+. ..+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999885 44677888899999999999999999998875 332 23344455577789999999999998
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCC
Q 010405 232 KSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM----PMK 305 (511)
Q Consensus 232 ~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 305 (511)
.... .|+ ...+..+..++...|+.++|...+.++.. ..|+ ....+.+...|...| ++|...++.+ ...
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7653 343 44466677788899999999999988765 2343 444556666777777 4676666555 233
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
|...-+..+ .+.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 433344333 34455676666666 7766643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-08 Score=91.74 Aligned_cols=358 Identities=10% Similarity=0.120 Sum_probs=226.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLV 84 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~ 84 (511)
+...|-.-+.+=.++..+..|+.+|++.. ++-...|--.+-.=-..|+...|.++|++..+ |+...|++.|+.=.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34445555555556666667777666533 11122344444444445666666666665543 66666666666666
Q ss_pred hcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-C---------------------------
Q 010405 85 RFGSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSL-D--------------------------- 134 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------------------------- 134 (511)
+-..++.|..++++.. .|++.+|--....=.++|+...|..+|...... |
T Consensus 186 RykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~ 265 (677)
T KOG1915|consen 186 RYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARF 265 (677)
T ss_pred HhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666543 455555555555555555555555555544331 1
Q ss_pred --------CCCC--HhHHHHHHHHHHhcCCHHHHHH--------HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 010405 135 --------LEPN--SAILVSLLSACAQLGALDYGNW--------VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196 (511)
Q Consensus 135 --------~~p~--~~t~~~ll~~~~~~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 196 (511)
++.+ ...|......=-+-|+...... -++.+++.+ +.|-.+|--.++.-...|+.+...++
T Consensus 266 iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~ 344 (677)
T KOG1915|consen 266 IYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRET 344 (677)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHH
Confidence 1111 1122222221122233222211 122233322 44555666677777778999999999
Q ss_pred HHhcCCC--Ce---eehHHHHH--------HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----ccCCHHHH
Q 010405 197 FHSYGDK--DV---SAYTSAIF--------GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS----HLGWVEKG 259 (511)
Q Consensus 197 ~~~~~~~--~~---~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a 259 (511)
|++.... .. ..|..-|- .=....+.+.+.++|+..++. ++-...||.-+--.|+ ++.++..|
T Consensus 345 yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 345 YERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 9987652 11 12322221 112467889999999998883 4445677776554443 56889999
Q ss_pred HHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
.+++.... |.-|...++...|..-.+.+.++....++++. ...| |-.+|......-...|+.+.|..+|+-++..
T Consensus 424 RkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 424 RKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 99998885 68899999999999999999999999999987 5566 6678988888888999999999999999883
Q ss_pred CCCC--chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 338 DQNH--DGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 338 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...+ ...+-..++.-...|.++.|..+++++.++.
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 2211 2455566777788999999999999998764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-08 Score=98.39 Aligned_cols=363 Identities=13% Similarity=0.077 Sum_probs=248.9
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCCCC--h---hHHHH
Q 010405 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN--D---VSWNS 78 (511)
Q Consensus 7 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~~~~~ 78 (511)
+..|+.+|..|.-+...+|+++.+-+.|++..+ .....|+.+...|...|.-..|+.+++.-..+. + ..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 557889999999999999999999999997553 345679999999999999999999998775422 2 22222
Q ss_pred HHHHHH-hcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHC-----------CChhHHHHHHHHHHHCCCCCC
Q 010405 79 ILGGLV-RFGSVDDACRVFNQMPK--------RSLVSWVVLISGFAQN-----------GRPKEALALFREMQSLDLEPN 138 (511)
Q Consensus 79 li~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~ 138 (511)
.-..|. +.+.++++...-.+... .....|..+.-+|... ....++++.+++..+.+. -|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 223333 34556665555444332 2334555555555432 234678888888877642 23
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-e----------
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK--D-V---------- 205 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~-~---------- 205 (511)
+.....+.--|+..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.+...+. + -
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333344456778899999999999999876778889999999999999999999988765431 1 0
Q ss_pred ----------eehHHHHHHHH------H-----------------cCChHHHHHHHHHHH--------hCC---------
Q 010405 206 ----------SAYTSAIFGLA------M-----------------NGHSIEAFELFENMK--------SKG--------- 235 (511)
Q Consensus 206 ----------~~~~~li~~~~------~-----------------~g~~~~A~~~~~~m~--------~~g--------- 235 (511)
.|...++...- + .++..+|.+..+.+. ..|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 01111111100 0 011222222211110 001
Q ss_pred CC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 010405 236 IS--PDS------ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP 306 (511)
Q Consensus 236 ~~--p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 306 (511)
+. |+. ..|......+...+..++|...+.+..+ -.+.....|......+...|.+++|.+.|... -+.|
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 01 111 1223344456667778888877777765 23345667777888888999999999988776 6677
Q ss_pred C-HHHHHHHHHHHHhcCchhHHHH--HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 307 D-NVIWGTLLGACRVHRNAEMGQR--IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 307 ~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+ +.+..++...+...|+...|.. ++..+.+.+|.++..|..|+.++-+.|+.++|.+.|+...+..
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 5 5588889999999999999988 9999999999999999999999999999999999999876543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=109.30 Aligned_cols=336 Identities=12% Similarity=0.082 Sum_probs=203.8
Q ss_pred eecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC----CChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHH
Q 010405 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD----LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNS 78 (511)
Q Consensus 3 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 78 (511)
...|+.||.++|.+||.-|+..|+.+.|- +|.-|.- -+...++.++.+..++++.+.+. +|.+.+|..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~ 88 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTN 88 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHH
Confidence 35799999999999999999999999998 8887763 35567899999988888887665 788999999
Q ss_pred HHHHHHhcCCHHH---HHHHHhhCCC-------CChhHH---------------HHHHHHHHHCCChhHHHHHHHHHHHC
Q 010405 79 ILGGLVRFGSVDD---ACRVFNQMPK-------RSLVSW---------------VVLISGFAQNGRPKEALALFREMQSL 133 (511)
Q Consensus 79 li~~~~~~g~~~~---A~~~~~~~~~-------~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~~ 133 (511)
|..+|...|++.. .++.++.+.. ....-| ...+....-.|-++.+++++..+...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999999665 3332222211 011111 12333344445556666655544322
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----eeehH
Q 010405 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD----VSAYT 209 (511)
Q Consensus 134 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~ 209 (511)
.- +. ++...++-+... ..-.+++........-.|+..++.++++.-...|+++.|..++.+|.++. ..-|.
T Consensus 169 a~--~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 169 AW--NA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cc--cc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 10 00 111123333222 23333444433332225888899999999888999999999999998753 33344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDL 285 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 285 (511)
.++.+ .+...-+..+++.|...|+.|+..|+...+-.+...|....+. .|.+.+ ...+..+..+
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~---------e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE---------EGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc---------cccchhhhhhHHHHHHHhcc
Confidence 55544 7778888888888999999999999988887777755532222 122221 2223333332
Q ss_pred HHHcCCHHHH-----HHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh----cCCCCchhHHHHHHHHH
Q 010405 286 LGRAGLLEEA-----ENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE----SDQNHDGRYILLSNIYV 353 (511)
Q Consensus 286 ~~~~g~~~~A-----~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~ 353 (511)
.....+++.- ...+.+. ++.....+|.. ..-...+|..++.+++...+.. +.+++...|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 1111122111 1111111 22222344433 3334447888888888888776 45666777887777776
Q ss_pred HcCCchHHHHH
Q 010405 354 ETLKGENAEEV 364 (511)
Q Consensus 354 ~~g~~~~A~~~ 364 (511)
+.-+.--...+
T Consensus 391 rr~e~~~~~~i 401 (1088)
T KOG4318|consen 391 RRIERHICSRI 401 (1088)
T ss_pred HHHHhhHHHHH
Confidence 65443333333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-08 Score=90.20 Aligned_cols=351 Identities=11% Similarity=0.025 Sum_probs=215.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHH-HHHcCC-h-HHHHH---HHccCC--------------C--
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMING-YVRNGE-I-LEGLK---LFDKMP--------------Q-- 70 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~-~~~~g~-~-~~A~~---~~~~m~--------------~-- 70 (511)
.---.+..|...++-++|.....+.++.-...-+.|+.+ +.+.|. - ++.+. +..+.+ .
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcch
Confidence 334556778788899999999988885433334444433 333322 1 11111 111111 0
Q ss_pred -------------CChhHHHHHHHHHHhc--CCHHHHHHHH--hhCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 010405 71 -------------RNDVSWNSILGGLVRF--GSVDDACRVF--NQMP---KRSLVSWVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 71 -------------~~~~~~~~li~~~~~~--g~~~~A~~~~--~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
|+..+...-+.+|+.+ ++-..|..+| -+.. ..|+.....+...+...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 1112223334444443 3333333333 2222 246778888999999999999999999888
Q ss_pred HHCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Cee
Q 010405 131 QSLDLEPNSA-ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVS 206 (511)
Q Consensus 131 ~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~ 206 (511)
+.. .|+.. ......-.+.+.|+.+....+...+.... ......|-.-........+++.|+.+-++..+. ++.
T Consensus 259 ~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 259 LCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred hhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 764 34332 22223334567778877777766665542 112222222233344567788888888777653 334
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHH-H
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV-D 284 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~ 284 (511)
.+-.-...+.+.|++++|.-.|+..+.. .| +...|..|+.+|...|.+.+|.-.-+...+ -++.+..+.+.+. .
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTL 411 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhhcce
Confidence 4444455677888888888888887764 43 567888888888888888888777666654 2344555555442 2
Q ss_pred HHHHc-CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH
Q 010405 285 LLGRA-GLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361 (511)
Q Consensus 285 ~~~~~-g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 361 (511)
.+.-. -.-++|.+++++. .++|+-. ..+.+...|...|..+.++.++++.+...|++ ...+.|++.+...+.+++|
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHH
Confidence 23222 2246777777765 6667543 55666677888888888888888888888854 6778888888888888888
Q ss_pred HHHHHHHHhC
Q 010405 362 EEVRKTMRKR 371 (511)
Q Consensus 362 ~~~~~~m~~~ 371 (511)
.+.|......
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 8887766543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-09 Score=98.46 Aligned_cols=91 Identities=15% Similarity=-0.029 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHc
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMN 218 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 218 (511)
|..+...+...|+.++|...|++.++.. +.+...|+.+...|...|++++|.+.|++..+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444444445555555555555544442 22344444444444555555544444444432 1 223344444444444
Q ss_pred CChHHHHHHHHHHHh
Q 010405 219 GHSIEAFELFENMKS 233 (511)
Q Consensus 219 g~~~~A~~~~~~m~~ 233 (511)
|++++|++.|++..+
T Consensus 146 g~~~eA~~~~~~al~ 160 (296)
T PRK11189 146 GRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=100.50 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CChh-HHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CC
Q 010405 74 VSWNSILGGLVRFGSVDDACRVFNQMPK----------RSLV-SWVVLISGFAQNGRPKEALALFREMQSL-----D-LE 136 (511)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~ 136 (511)
.+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455588999999999999999987643 2222 3455778899999999999999998652 2 11
Q ss_pred C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeeh
Q 010405 137 P-NSAILVSLLSACAQLGALDYGNWVYSYIQKK-----C-IKLDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208 (511)
Q Consensus 137 p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 208 (511)
| -..+++.|..+|.+.|++++|...++.+.+. | ..|.+ ...+.+...+...+++++|..+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q---------- 349 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ---------- 349 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH----------
Confidence 2 2457778888899999999999888776652 1 11222 133444555555566666655554
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc----C-CCCC-HhHHHHH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH----G-IKPE-LDHYACM 282 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l 282 (511)
.|++++.........--..+++.|...|.+.|++++|.++|+++.... + ..+. ...++.|
T Consensus 350 --------------~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 350 --------------KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred --------------HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 333333321111100123578888888888899998888888877532 1 1222 4567888
Q ss_pred HHHHHHcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 283 VDLLGRAGLLEEAENFIASM--------PMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
...|.+.+++.+|.++|.+. +..|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88899999988888888765 334554 4889999999999999999999999886
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-08 Score=92.00 Aligned_cols=145 Identities=12% Similarity=-0.049 Sum_probs=96.7
Q ss_pred cCCHHHHHHHHhhCCC-----C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 86 FGSVDDACRVFNQMPK-----R--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
.+..+.+..-+.++.. + ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455666666655542 1 13457777778888888888888888887754 33567888888888888888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeee-hHHH-HHHHHHcCChHHHHHHHHHHH
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA-YTSA-IFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~l-i~~~~~~g~~~~A~~~~~~m~ 232 (511)
...++.+++.. +.+..++..+..+|...|++++|.+.|+...+.+... +..+ ...+...++.++|+..|.+..
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88888888764 3346677778888888888888888888766422211 1111 112234566777777776544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-09 Score=93.19 Aligned_cols=228 Identities=11% Similarity=0.095 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 153 (511)
-+.+..+|.+.|-+.+|++.|+...+ |-+.||-.|-..|.+..++..|+.+|.+-++. .+-|........+.+...+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 36788999999999999999987653 67789999999999999999999999888764 2334444456778888999
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
+.+.|.++++...+.. +.++.....+...|.-.++.+.|+.+|+++.+ .+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999998874 45666666777788888999999999998765 5677899999999999999999999998
Q ss_pred HHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 010405 231 MKSKGISPD--SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD 307 (511)
Q Consensus 231 m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 307 (511)
.+..--.|+ ...|-.+.......|++..|.+.|+.... .-......++.|.-.-.+.|++++|..+++.. ...|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 876544454 34677777777888999999999998876 33344678888888888899999999988876 33454
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-07 Score=85.42 Aligned_cols=344 Identities=13% Similarity=0.082 Sum_probs=191.0
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHH--HhcCCHHHH
Q 010405 18 IQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGL--VRFGSVDDA 92 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~--~~~g~~~~A 92 (511)
++.+...|++++|.+.-+++. +.|...+..-+-++.+.+++++|+.+.+.-...+......+=.+| -+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 577788888999988877655 345666777777788888888888665544321111111022333 345666666
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC----------------------------CCCHhHHHH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL----------------------------EPNSAILVS 144 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------------------~p~~~t~~~ 144 (511)
...++.....+..+...-...+.+.|++++|+++|+.+.+.+. .| ..+|..
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel 177 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYEL 177 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHH
Confidence 6666644443443444445556666666666666666533221 11 113332
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHHcCC-------C------ccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C
Q 010405 145 LLS---ACAQLGALDYGNWVYSYIQKKCI-------K------LDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDK---D 204 (511)
Q Consensus 145 ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~------~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~ 204 (511)
+.+ .+...|++.+|+++++...+.+. . .+. ..-.-|.-++...|+.++|.+++...... |
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 222 23455666666666666632110 0 000 01112333445566666666666544321 1
Q ss_pred e-------------------------------------------------------------------------------
Q 010405 205 V------------------------------------------------------------------------------- 205 (511)
Q Consensus 205 ~------------------------------------------------------------------------------- 205 (511)
.
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMS 337 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC
Confidence 1
Q ss_pred --eehHHHHHHHH--HcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHH--------HchhhcC
Q 010405 206 --SAYTSAIFGLA--MNGHSIEAFELFENMKSKGISPD--SISYIAVLSACSHLGWVEKGFYYFH--------SMFDVHG 271 (511)
Q Consensus 206 --~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~ 271 (511)
..+.+++.... +...+.+|.+++...-+. .|. .......+......|+++.|.+++. .+.+ .+
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~ 414 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AK 414 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hc
Confidence 00111111110 111233344444433332 222 2233344455566788888888888 4443 23
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 272 IKPELDHYACMVDLLGRAGLLEEAENFIASM--------PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 272 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.. +.+...++..+.+.++-+-|..++.+. .-.+. ..+|.-+...-.++|+-++|...++++.+.+|++.
T Consensus 415 ~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 415 HL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred cC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 33 445566777888887766666665544 11121 22344444445677999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
.+...++.+|++. +.+.|..+-+.+
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999887 778887776544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.6e-07 Score=85.63 Aligned_cols=219 Identities=14% Similarity=0.048 Sum_probs=175.0
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
-+.-.|+...|...|+........++. .|.-+..+|....+.++..+.|..+.+.+ +-++.+|.--..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 345578999999999999887544433 37778888999999999999999999986 4466777778888888999999
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhh
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 269 (511)
|..-|++... .++.+|-.+..+..+.+++++++..|++.+.. ++-....|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 9999998876 35567777777778899999999999999876 454577888899999999999999999999886
Q ss_pred cCCCCC---------HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 270 HGIKPE---------LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 270 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
+.|+ +.+.-+++..- -.+++..|.+++++. .+.| ....+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 22222222222 348999999999987 6666 45688889999999999999999999988753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-07 Score=93.26 Aligned_cols=255 Identities=10% Similarity=0.042 Sum_probs=143.3
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----C
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-----G 188 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-----g 188 (511)
+...|++++|++.+..-... +......+......+.+.|+.++|..++..+++.+ |.+...|..|..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34445555555555443221 22222233333444455555555555555555543 22333344444333111 1
Q ss_pred CHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010405 189 SIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHS-IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265 (511)
Q Consensus 189 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 265 (511)
+.+...++|+++.. |...+...+.-.+.....+ ..+..++..+...|++ .+|..|-..|......+-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 34444455554433 1111111111111111122 2445566666777765 3455555556655555555555544
Q ss_pred chhhc-------------CCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHH
Q 010405 266 MFDVH-------------GIKPELD--HYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 266 ~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 328 (511)
..... .-+|+.. ++..+...|...|++++|++++++. ...|+ +..|..-...+...|++++|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 43211 1134432 4456677888899999999999876 55675 446666677788999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+..+.+..+++.|-..-.-.+..+.++|+.++|.+++....+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999988866666777778899999999999988877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-07 Score=79.02 Aligned_cols=196 Identities=13% Similarity=0.036 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHc
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN 218 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 218 (511)
...|.-.|...|+...|+.-++++++.. |.+..++..+...|.+.|+.+.|.+.|++... .+....|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344445555555555555555555543 22344555555555556666666555554432 3445555555556666
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAE 296 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 296 (511)
|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+ ..|+ ......+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 66666666666665432111 234566666566666777777777766665 2232 445556666666777777777
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 297 NFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 297 ~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.+++.. ...++..+..-.|..-...||.+.+.+.-.++.+..|..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 666665 223555555555555666677777777666666666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-06 Score=81.68 Aligned_cols=322 Identities=10% Similarity=0.006 Sum_probs=215.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC----------------------CChh----------HHHHHHHHHHhc--CC
Q 010405 43 VSWNSMINGYVRNGEILEGLKLFDKMPQ----------------------RNDV----------SWNSILGGLVRF--GS 88 (511)
Q Consensus 43 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------------~~~~----------~~~~li~~~~~~--g~ 88 (511)
..-.-.+.+|...++-+.|.....+.+. |.+. .--..|.+..+. ..
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 3345677888888999999988887763 1111 112233333332 12
Q ss_pred HHHHHHHHhhCCCCChh-HHHHHHHHH--HHCCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 89 VDDACRVFNQMPKRSLV-SWVVLISGF--AQNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 89 ~~~A~~~~~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
.+.+-.......-++.. +...-+.++ +..++...|..++--+... -++-|......+...+...|+.++|...|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 33333333333333332 222334444 4456666666655444332 2566788889999999999999999999999
Q ss_pred HHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 010405 165 IQKKCIKLDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 165 ~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
..-.+ |+. .......-.+...|++++...+...+... ....|-.-........+++.|+.+-.+.++.... +.
T Consensus 258 ~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~ 334 (564)
T KOG1174|consen 258 TLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NH 334 (564)
T ss_pred HhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cc
Confidence 87653 332 22222233345678888887777766543 3445666666677788999999999888775322 34
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHH-H
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-P-MKPDNVIWGTLL-G 316 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll-~ 316 (511)
..|..-..++...|++++|.-.|+.... +.| +...|.-|+..|...|++.||.-+-+.. . +..+..+...+. .
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTL 411 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcce
Confidence 4555555678889999999999998865 554 5889999999999999999998765543 1 223444444331 2
Q ss_pred HH-HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 317 AC-RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 317 ~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.| ....--++|.+++++.+.++|+-..+.+.++..+...|+.+++..++++-..
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 22 2333458899999999999999988999999999999999999999987654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.9e-07 Score=88.80 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
++..+...|...|+.++|.++.+..++ ..|+ +..|..-...|-+.|++.+|.+.++.. ...+ |-..-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 445556667788888888888888876 2454 677888888888888888888888776 3333 444444455667
Q ss_pred HhcCchhHHHHHHHHHhhcC--CCC-------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESD--QNH-------DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.|+.++|++++....+.+ |.. .....-.+.+|.+.|++..|++-+....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888877643 221 11223557888888988888877765543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.7e-07 Score=80.13 Aligned_cols=300 Identities=11% Similarity=0.063 Sum_probs=166.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHH---HHHHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHCC
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSIL---GGLVRFGSVDDACRVFNQMPK--RSLV-SWVVLISGFAQNG 118 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g 118 (511)
---+.+.+...|++..|+.-|....+-|+..|.++. ..|...|+-..|+.-|++..+ ||-. +--.-...+.++|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 344566677777777777777777776666666654 356666776666666666543 3322 1112234566777
Q ss_pred ChhHHHHHHHHHHHCCCCCC------------HhH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPN------------SAI--LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~------------~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+++|..-|+..++....-+ ... ....+..+...|+...|+.....+++.. +-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 88888877777766532110 011 1222334455677777777777777763 44667777777778
Q ss_pred HhcCCHHHHHHHHHhcC---CCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYG---DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
...|++..|+.-++... ..+...+--+-..+...|+.+.++...++.++ +.||....-. .-..+....+
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~------~YKklkKv~K 271 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP------FYKKLKKVVK 271 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH------HHHHHHHHHH
Confidence 88888877766555443 34555666666667777777777777777665 3555432111 0011111122
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-----VIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
.+..|.+ ..+.++|.++.+-.+.. ...|.. ..+..+-.++...+++.+|++...+++
T Consensus 272 ~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 272 SLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 2222221 12233444444333332 223321 122233344555566666666666666
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 336 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+.+|+|..++.--+.+|.-...+|+|+.-++...+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666665555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=97.26 Aligned_cols=220 Identities=11% Similarity=0.006 Sum_probs=173.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHH
Q 010405 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 224 (511)
-+.+.|++.+|.-.|+..++.. |-+...|.-|...-...++-..|+..+++..+- |..+.-+|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467788899998999888875 557888888888888888888888888887763 455666677788888888899
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 010405 225 FELFENMKSKGIS--------PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296 (511)
Q Consensus 225 ~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 296 (511)
+..++..+....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998887654211 00000000 1222333455666777777765676688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 297 NFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 297 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+-|+.+ .++| |...||-|...+....+.++|+..|.+++++.|.-..+...|+..|...|.+++|.+.|=....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999987 6777 6679999999999999999999999999999999999999999999999999999998865543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-06 Score=83.51 Aligned_cols=258 Identities=14% Similarity=-0.030 Sum_probs=134.4
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
..+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 34556677777777776666542 223323331 112222 23333333333331 111122233444555666677
Q ss_pred CCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCCHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDS--ISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 188 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~ 261 (511)
|++++|.+.+++..+ .+...+..+...|...|++++|..++++...... .|+. ..|..+...+...|+.++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776554 2344566666677777777777777776665321 1222 234455666777777777777
Q ss_pred HHHHchhhcCCCCCHhHH-H--HHHHHHHHcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 010405 262 YFHSMFDVHGIKPELDHY-A--CMVDLLGRAGLLEEAENF---IAS---M-PMKPDNVIWGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (511)
+++.........+..... + .++.-+...|..+.+.+. ... . +.............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777765311111111111 1 222223333322222221 111 1 11111122224555677888888888888
Q ss_pred HHHhhcC-C---C-----CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 332 NMLIESD-Q---N-----HDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 332 ~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+.+.... . . ........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8877621 1 1 23444566777889999999999998776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-07 Score=77.15 Aligned_cols=192 Identities=13% Similarity=0.039 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
+...|.-+|.+.|+...|..-+++.++.+ +-+..++..+...|...|..+.|.+.|+++++.. +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667788889999999999888888864 4466788888888889999999999998888874 446678888888899
Q ss_pred hcCCHHHHHHHHHhcCC-C----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010405 186 KCGSIDLAMQVFHSYGD-K----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.......|+.-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999987764 3 3457888888888899999999999988875322 3456667777888889999999
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+++.... +..++..+.-..|..-.+.|+-+.|-+.=..+
T Consensus 194 ~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99888876 44488888888888888888888776654443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-06 Score=83.47 Aligned_cols=349 Identities=15% Similarity=0.106 Sum_probs=208.4
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHH
Q 010405 20 FYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDAC 93 (511)
Q Consensus 20 ~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 93 (511)
.+...|+-++|........ ..+.+.|..+.-.+....++++|+++|+.... .|...+.-+--.-++.|+++...
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3444577777777666444 34567899888888888899999999988764 45556665555556667766665
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHhHHHHHH------HHHHhcCCHHHHHHHHH
Q 010405 94 RVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLL------SACAQLGALDYGNWVYS 163 (511)
Q Consensus 94 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~ 163 (511)
..-.+..+ ..-..|..++.++.-.|+...|..+.++..+.. -.|+...+.-.. ......|.++.|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 55544433 344678888888889999999999998887654 246655554332 23456677777777665
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHH-HHHHHcCChHHHH-HHHHH---------
Q 010405 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAI-FGLAMNGHSIEAF-ELFEN--------- 230 (511)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~--------- 230 (511)
.-... +......-.+-.+.+.+.+++++|..++..+.. ||...|.-.. .++.+-.+..+++ .+|..
T Consensus 210 ~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 210 DNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 54433 222333445567778889999999999998876 4444444332 2332222222222 33333
Q ss_pred -------------------------HHhCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHchhhcC----------
Q 010405 231 -------------------------MKSKGISPDSISYIAVLSACSHLGWVEK----GFYYFHSMFDVHG---------- 271 (511)
Q Consensus 231 -------------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~---------- 271 (511)
+.+.|++| +|..+.+.|-.....+- +..+...+.. .|
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG-TGMFNFLDDGKQ 364 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhccc-ccCCCccccccc
Confidence 33333322 22222222222221111 1112222211 11
Q ss_pred CCCCHhH--HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 272 IKPELDH--YACMVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 272 ~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
-+|.... +-.++..+-+.|+++.|...++.. .-.|+.+ .|..-...+...|++++|...++++.+++..|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 0344333 345677777888888888888776 5456554 34344455777788888888888888876655322224
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 348 LSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
-+.-..++.+.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 45555677888888888877766654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.2e-06 Score=80.30 Aligned_cols=346 Identities=14% Similarity=0.167 Sum_probs=222.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESD-----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF 86 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 86 (511)
..|-.-+....++|++..-+..|++.. ..-...|...+.-..+.|-++-++.+|++..+-++..-+--|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345555667778899999999998533 234457888898888999999999999999887777788889999999
Q ss_pred CCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHHCCChhH---HHHHHHHHHHCCCCCC--HhHHHHHHHHHHh
Q 010405 87 GSVDDACRVFNQMPKR----------SLVSWVVLISGFAQNGRPKE---ALALFREMQSLDLEPN--SAILVSLLSACAQ 151 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~ 151 (511)
+++++|.+.+...... +-..|+.+-...+++-+.-. ...+++.+... -+| ...|.+|..-|.+
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIR 260 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHH
Confidence 9999999998887532 23456666666665544332 22344444322 234 3567888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------------C------CHHHHHHHHHhcCCC------
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC----------------G------SIDLAMQVFHSYGDK------ 203 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----------------g------~~~~A~~~~~~~~~~------ 203 (511)
.|.++.|..++++.++.- ..+.-++.+.++|+.- | +++-...-|+.+..+
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 888888888888877652 2333344444444321 1 122223334433321
Q ss_pred ---------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 204 ---------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD------SISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 204 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
++..|..-+. ...|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 2223333322 2346677777888877654 3332 23577777888889999999999988876
Q ss_pred hcCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC---CCC-----------------CCHHHHHHHHHHHHhcCchh
Q 010405 269 VHGIKPE---LDHYACMVDLLGRAGLLEEAENFIASM---PMK-----------------PDNVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 269 ~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~-----------------p~~~~~~~ll~~~~~~g~~~ 325 (511)
-..+.- ..+|-...++=.+..+++.|+++.+.. |.. .+...|...+...-..|-++
T Consensus 416 -V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 416 -VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred -CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 222211 445666667777888888888888876 211 12345665665555667777
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
....++++++++.-..|......+..+-...-++++.+++
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777777765544555555555555555566666666
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.1e-06 Score=90.57 Aligned_cols=356 Identities=12% Similarity=0.001 Sum_probs=226.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhH--HHHHHHHHHHcCChHHHHHHHccCCC----CChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESDDLDVVS--WNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~ 90 (511)
....|...|++.+|..........+... ...........|+++.+...++.+.. .+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3445556677777666665554332211 11222345567888888888877742 23333344455667789999
Q ss_pred HHHHHHhhCC----CCC------h--hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCC
Q 010405 91 DACRVFNQMP----KRS------L--VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS----AILVSLLSACAQLGA 154 (511)
Q Consensus 91 ~A~~~~~~~~----~~~------~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~ 154 (511)
+|...++... ..+ . .....+...+...|++++|...+++....-...+. .+.+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 9888887642 111 1 12223345567899999999999987763111121 244556667788999
Q ss_pred HHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----eeehHHHHHHHHHc
Q 010405 155 LDYGNWVYSYIQKK----CI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-------KD----VSAYTSAIFGLAMN 218 (511)
Q Consensus 155 ~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~ 218 (511)
++.|...+.+.... |. .....+...+...+...|++++|...+++... ++ ...+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999887753 21 11233556677788899999999998876543 11 11234455567778
Q ss_pred CChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHH-----HHHHHHHHHc
Q 010405 219 GHSIEAFELFENMKSK--GISPD--SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY-----ACMVDLLGRA 289 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~ 289 (511)
|++++|...+++.... ...+. ...+..+.......|+.++|...+...............+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999999999887653 11222 2344445567778999999999988876421111111111 1123445668
Q ss_pred CCHHHHHHHHHhCCC-C-CCHH----HHHHHHHHHHhcCchhHHHHHHHHHhhcC------CCCchhHHHHHHHHHHcCC
Q 010405 290 GLLEEAENFIASMPM-K-PDNV----IWGTLLGACRVHRNAEMGQRIGNMLIESD------QNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 290 g~~~~A~~~~~~~~~-~-p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~ 357 (511)
|+.+.|...+..... . .... .+..+..++...|+.++|...++++.... +....++..++.+|.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999877621 1 1111 13455566888999999999999988731 1123467788899999999
Q ss_pred chHHHHHHHHHHhCC
Q 010405 358 GENAEEVRKTMRKRK 372 (511)
Q Consensus 358 ~~~A~~~~~~m~~~g 372 (511)
.++|...+.+..+..
T Consensus 747 ~~~A~~~L~~Al~la 761 (903)
T PRK04841 747 KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=87.98 Aligned_cols=248 Identities=15% Similarity=0.102 Sum_probs=150.3
Q ss_pred HHhcCCHHHHHHHHhhCCC--C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK--R--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
+.-.|++..+..-.+ ... + +.....-+.+++...|+++.++. +..... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334567776665443 111 1 22344556677777887765443 333332 55555555554444433444444
Q ss_pred HHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 159 NWVYSYIQKKCIK-LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
..-++........ .+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 23334444445677788888888887765 45556666788888899999999999988864 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 010405 238 PDSISYIAVLSACSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIW 311 (511)
Q Consensus 238 p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 311 (511)
.| .+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++. ...| |+.+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 444445554432 3468889999999876 45677888888888888899999998888775 4344 45566
Q ss_pred HHHHHHHHhcCch-hHHHHHHHHHhhcCCCCc
Q 010405 312 GTLLGACRVHRNA-EMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 312 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 342 (511)
..++......|+. +.+.+.+.++....|.++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6777777777776 667788888888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-08 Score=89.53 Aligned_cols=243 Identities=12% Similarity=0.035 Sum_probs=164.4
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886555 322222234455667788888899876543 3333333 6666666666555544456677
Q ss_pred HHHHHHhcCCCCee---ehHHHH--HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 193 AMQVFHSYGDKDVS---AYTSAI--FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 193 A~~~~~~~~~~~~~---~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
+..-++........ .+..++ ..+...|++++|++++.+- .+.......+..+...++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777655432221 122233 3455679999999988642 355666677889999999999999999997
Q ss_pred hhcCCCCCHhHHHHHHHHH----HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 268 DVHGIKPELDHYACMVDLL----GRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+ +..|. +...+..++ .-.+.+.+|.-+|+++ ...+++.+.+.+..+....|++++|+++++++.+.+|.+
T Consensus 159 ~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 Q---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred h---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 6 44443 333344333 3334799999999998 344688888888899999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCc-hHHHHHHHHHHh
Q 010405 342 DGRYILLSNIYVETLKG-ENAEEVRKTMRK 370 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 370 (511)
+.+...++.+....|+. +.+.+.+..++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999998 667788888775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-05 Score=78.93 Aligned_cols=356 Identities=15% Similarity=0.155 Sum_probs=208.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCh----------------------HHHHHHHcc
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESDD--LDVVSWNSMINGYVRNGEI----------------------LEGLKLFDK 67 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~----------------------~~A~~~~~~ 67 (511)
+.|++|.+.|.+.|.+++|+++|++... ..+.-++.+-++|++-..- +-...-|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 5789999999999999999999986432 2333344444444432111 112222222
Q ss_pred CCC---------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC--hhHHHHHHHHHHHCCChhHH
Q 010405 68 MPQ---------------RNDVSWNSILGGLVRFGSVDDACRVFNQMPK-------RS--LVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 68 m~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A 123 (511)
+.. .++..|..-+..| .|+..+-..+|.+..+ +. -..|-.+...|-.+|+.+.|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 221 1222333332222 3444444455544321 11 13578888888888888888
Q ss_pred HHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCc------cHHHHHHHHHH
Q 010405 124 LALFREMQSLDLEPN---SAILVSLLSACAQLGALDYGNWVYSYIQKKC-----------IKL------DSILCAALIDM 183 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~ 183 (511)
..+|++..+...+-- ..+|......=.+..+++.|..+.+.+.... .++ +..+|..+++.
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 888888766432211 1233333333345566777777766654321 111 23344555666
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHH---HHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHh---ccCCH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIF---GLAMNGHSIEAFELFENMKSKGISPDSI-SYIAVLSACS---HLGWV 256 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---~~g~~ 256 (511)
--..|-++....+|+++.+--+.|=..++. .+-.+.-++++.+.|++-...=.-|+.. .|+..|.-+. ....+
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 666788888888888887644333222222 1224556788888887655442334432 4444444332 23468
Q ss_pred HHHHHHHHHchhhcCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCchhHHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELD--HYACMVDLLGRAGLLEEAENFIASM--PMKPD--NVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
+.|..+|++..+ |.+|... .|......=-+-|....|+.++++. .+++. ...|+..|.--...=-+..-..+
T Consensus 567 EraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 567 ERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 999999999997 6776522 2222233334568888999999998 34443 34788777654444446677889
Q ss_pred HHHHhhcCCCCch--hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 331 GNMLIESDQNHDG--RYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 331 ~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|+++++.-|++.. .....+.+-.+.|..+.|..++..-.+-
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 9999998776532 2335567778899999999999766553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-05 Score=72.97 Aligned_cols=353 Identities=10% Similarity=0.027 Sum_probs=200.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCC---------------Chh----
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR---------------NDV---- 74 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~---- 74 (511)
+...|...|++++|..++.-+. .++...|-.|.-++--.|.+.+|..+-.+..+. |..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 3445556677777777776433 244555666666666667777777766666531 111
Q ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhH
Q 010405 75 ----------SWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVV-LISGFAQNGRPKEALALFREMQSLDLEPNSAI 141 (511)
Q Consensus 75 ----------~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 141 (511)
---+|.++.--.-.+++|.+++.+... |+....|. |.-+|.+..-++-+.+++.-.++. ++-+..+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA 221 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIA 221 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHH
Confidence 112233333333456777777777654 33344443 334566677777777777666553 2223333
Q ss_pred HHHHHHHHHhcCCHHHHHH--------------HHHHHHHcCC------C------c-----cHHHHHHHHHHHHhcCCH
Q 010405 142 LVSLLSACAQLGALDYGNW--------------VYSYIQKKCI------K------L-----DSILCAALIDMYAKCGSI 190 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~--------------~~~~~~~~~~------~------~-----~~~~~~~li~~y~~~g~~ 190 (511)
.+.......+.=+-..|.+ ..+.+.++++ + | -+..--.|+--|.+.+++
T Consensus 222 ~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 222 KNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV 301 (557)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccH
Confidence 3333322222211111111 1122222211 0 0 012223355568889999
Q ss_pred HHHHHHHHhcCCCCeeehHHHHHHHHHcCC-------hHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHH
Q 010405 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGH-------SIEAFELFENMKSKGISPDSIS-YIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~ 262 (511)
++|..+.+.+...++.-|-.-.-.++..|+ ..-|.+.|+-.-.++..-|.+. -.++.+++.-..++|+.+.+
T Consensus 302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 999998887765444434333333444443 3345555544434444333321 22344455556779999999
Q ss_pred HHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHhcCchhHHHHHHHHHhhcCC
Q 010405 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP-MK-PDNVIWGTLL-GACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 263 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
++.+.. +=...|...+ .+.++++..|.+.+|+++|-.+. .+ .|..+|.+++ .+|.+.+.++.|-.++-++ ..|
T Consensus 382 lnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~ 457 (557)
T KOG3785|consen 382 LNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTP 457 (557)
T ss_pred HHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCc
Confidence 999987 5444454444 47889999999999999998872 12 4677777666 5578888888887665332 233
Q ss_pred CCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 340 NHDG-RYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 340 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
.+.. ....+++-|.+++.+--|.+.|+.+...+..
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 3322 3335678889999999999999988875543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-06 Score=80.02 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----HHHHHHHHH--HHhcCchhHHHHHHHHHhh
Q 010405 281 CMVDLLGRAGLLEEAENFIASMP--MKP---DN----VIWGTLLGA--CRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~~--~~p---~~----~~~~~ll~~--~~~~g~~~~a~~~~~~~~~ 336 (511)
....++...|+.++|..+++.+. ... .. .+-..++.+ +...|+.++|.+.+..++.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556667777777777776651 111 11 111222333 5677888888888887776
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.2e-09 Score=61.75 Aligned_cols=34 Identities=38% Similarity=0.460 Sum_probs=30.5
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 010405 5 NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD 38 (511)
Q Consensus 5 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 38 (511)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999885
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-06 Score=84.49 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChHHHHHHHh--cCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC
Q 010405 16 SLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 70 (511)
+.|+.|.+.|.+..|.+.-. +....|......+..++.+..-+++|-.+|+++..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d 676 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD 676 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC
Confidence 44566666666655554432 11223444444444444444444444444444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-06 Score=79.78 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee---ehH-------HHH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS---AYT-------SAI 212 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~-------~li 212 (511)
..+.++.....+++.+.+-+....+.. .+...++....+|...|.+.++...-+...+.... -|+ .+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555555556666666666666553 45555566666666666666655554443332111 111 123
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCC
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGL 291 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 291 (511)
.+|.+.++++.|+..|.+.+.....|+.. .+....+++........- +.|.. .-...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccC
Confidence 34455566666666666655443333321 111223333333332221 23332 111122556677889
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+.+|.+.+.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.+++-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887 3445 667888888888899999999999999999999888888888888888888999998887776
Q ss_pred hCC
Q 010405 370 KRK 372 (511)
Q Consensus 370 ~~g 372 (511)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.5e-06 Score=74.23 Aligned_cols=299 Identities=14% Similarity=0.127 Sum_probs=164.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHHHHHCC
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQR---NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVV-LISGFAQNG 118 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 118 (511)
+++.+..+.+..+++.|++++..-.++ +....+.|..+|-...++..|...++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455555566666777777776655442 334455556666667777777777776653 22222221 234455666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSA--CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 196 (511)
.+.+|+.+...|... |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 777777766665432 222111111111 123445555555554443222 233333344444556666666666
Q ss_pred HHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC
Q 010405 197 FHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272 (511)
Q Consensus 197 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 272 (511)
|+...+ ....+||..+ +..+.|+.+.|+++..++.+.|++-.+. ++. |..-++..+ +.. |
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgI--------Gm~tegiDv-rsv----g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGI--------GMTTEGIDV-RSV----G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCc--------cceeccCch-hcc----c-
Confidence 665544 2334444433 2334556666666666666665542111 110 000000000 000 0
Q ss_pred CCC-------HhHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 273 KPE-------LDHYACMVDLLGRAGLLEEAENFIASMP----MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 273 ~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.|- ...+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 011 1123333345678899999999999995 23477777655332 23466777888888888899988
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHH
Q 010405 342 DGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
+.++..++-.|++..-++-|..++-
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 9999999999999999999988874
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-05 Score=71.93 Aligned_cols=357 Identities=12% Similarity=0.036 Sum_probs=196.5
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHH-
Q 010405 6 SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSI- 79 (511)
Q Consensus 6 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l- 79 (511)
|+.--..-+++.+..+.+..++++|++++..-. +++....+.+.-+|....++..|-.+|+++.+ |...-|..-
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 333334456777888888899999999987544 33566777888888888889888888888764 322111100
Q ss_pred HHHH----------------------------------HhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHHCCChhHHH
Q 010405 80 LGGL----------------------------------VRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEAL 124 (511)
Q Consensus 80 i~~~----------------------------------~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 124 (511)
...+ -..+++..+..+.++.+ +.+..+.+.......+.|+++.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 0111 12355555555666655 344445555555566788888888
Q ss_pred HHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------ccHH--------HHHHHH-
Q 010405 125 ALFREMQSL-DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK-------------LDSI--------LCAALI- 181 (511)
Q Consensus 125 ~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~li- 181 (511)
+-|+...+- |..| ...|+..+ +..+.++.+.|.....+++++|+. ||+. .-++++
T Consensus 165 qkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 888777654 4443 44555444 455667888888888888776642 1111 112222
Q ss_pred ------HHHHhcCCHHHHHHHHHhcCCC-----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 182 ------DMYAKCGSIDLAMQVFHSYGDK-----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 182 ------~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
..+.+.|+.+.|.+.+-.|+.+ |++|...+.-. -..+++.+..+-+.-++.... ....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 3356677888888888877753 55655444322 123445555555555555432 3456777777788
Q ss_pred hccCCHHHHHHHHHHchhhcCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCc---h
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGI-KPELDHYACMVDLLGRAGLLEEAENFIASMPMKP--DNVIWGTLLGACRVHRN---A 324 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~---~ 324 (511)
++..-++.|-.++.+-.. ... -.+...|+.|=......-..++|++-++.+...- .......-+.--...++ .
T Consensus 321 CKNeyf~lAADvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhhHHHhHHHHHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 887777777776654332 111 1223334333333333445666655544431000 00000000111111111 1
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 325 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+++-+++.+++-. .+...-+..|++..++..++++|..-.+
T Consensus 400 R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 122333333333211 2344556778888899999998876544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-05 Score=75.13 Aligned_cols=348 Identities=14% Similarity=0.112 Sum_probs=183.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 83 (511)
+.+.|..+.-.+....++++|++.|.... +.|...|.-+.-.-++.|+++.....-.+..+ .....|..+.-++
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34668888888888889999999997533 33444454444444455555444444333332 2234455555555
Q ss_pred HhcCCHHHHHHHHhhCCC-----CChhHHHH------HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHh
Q 010405 84 VRFGSVDDACRVFNQMPK-----RSLVSWVV------LISGFAQNGRPKEALALFREMQSLDLEPNSAIL-VSLLSACAQ 151 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~ 151 (511)
.-.|+...|..+.+...+ ++...+.- ........|.+++|++-+..-... ..|...+ ..-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHH
Confidence 555666665555544331 22222211 122334455555555544333221 1121111 122333455
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH-HHHHhc------------------------------
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM-QVFHSY------------------------------ 200 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~------------------------------ 200 (511)
.+++++|..++..++..+ |.+...|-.+..++.+..+.-++. .+|...
T Consensus 232 l~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 556666666666555552 222333333333333222222222 333332
Q ss_pred ----CCCCe-eehHHHHHHHHHcCChHHHHHHHHHHH----hCCC----------CCCHH--HHHHHHHHHhccCCHHHH
Q 010405 201 ----GDKDV-SAYTSAIFGLAMNGHSIEAFELFENMK----SKGI----------SPDSI--SYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 201 ----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~----------~p~~~--t~~~ll~~~~~~g~~~~a 259 (511)
.++.+ ..+..+.+.|-.-...+-..++...+. ..|. +|... |+..+...+-..|+++.|
T Consensus 311 L~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 311 LRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 22222 223333333332222221122222222 1111 45544 444567778899999999
Q ss_pred HHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 260 FYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMP-M-KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
..+.+.... -.|+ ++.|..-.+.+...|.+++|..++++.. + .||...-.--..-..+.++.++|.++.....+
T Consensus 391 ~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 391 LEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 999999976 3455 6677777889999999999999999872 2 34554433444445778999999999988877
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 337 SDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 337 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
.+- .....|..+-+-==..+.+..+++
T Consensus 468 ~~~---~~~~~L~~mqcmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 468 EGF---GAVNNLAEMQCMWFQLEDGEAYLR 494 (700)
T ss_pred ccc---chhhhHHHhhhHHHhHhhhHHHHH
Confidence 544 334444444333334455555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-05 Score=69.65 Aligned_cols=322 Identities=11% Similarity=0.075 Sum_probs=216.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHH---HHHHHcCChHHHHHHHccCCCCChhHHHHH---HHHHHhcCCH
Q 010405 16 SLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMI---NGYVRNGEILEGLKLFDKMPQRNDVSWNSI---LGGLVRFGSV 89 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~ 89 (511)
-|-..+...|++.+|+.-|....+-|+..|-++- ..|...|+-..|+.-|.+..+-.+.-+.+- ...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3455666779999999999988888888887775 468889999999988888875222222222 3467899999
Q ss_pred HHHHHHHhhCCCCCh------h----------HH--HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 90 DDACRVFNQMPKRSL------V----------SW--VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 90 ~~A~~~~~~~~~~~~------~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
+.|..-|+...+.++ . .| ...+..+.-.|+...|+.....+++.. +-|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 999999998864221 1 12 234555677899999999999998853 4588888888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
.|.+..|+.-+..+-+.. ..++...--+-..+...|+.+.++...++..+-|...- .+|..-....+..+.+..|
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK----~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK----LCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh----hHHHHHHHHHHHHHHHHHH
Confidence 999999998888777764 33556666677888999999999998888765333210 0111111122233333333
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 010405 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHYACMVDLLGRAGLLEEAENFIASM-PMK 305 (511)
Q Consensus 232 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 305 (511)
.+ ....+.+.++.+-.+...+ ..|. ...+..+-..+...|++.+|++...+. .+.
T Consensus 277 e~----------------~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 277 EQ----------------AIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred HH----------------HHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 22 2233444455555555544 1232 223444556667778888888877765 556
Q ss_pred CC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 306 PD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 306 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
|| +.++.--..+|.....++.|+.-|+.+.+.++++..+-.. .+.|.++.+...+++
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRD 395 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccch
Confidence 65 6677777788888888999999999999998877543222 345555555544443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-06 Score=90.00 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=166.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 010405 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK--------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242 (511)
Q Consensus 171 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (511)
|-....|-..|......+++++|++++++.... -.-.|.+++..-...|.-+...++|+++.+.- . .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 445667888888888899999999999887642 22368888888888888888899999988742 1 2456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM----PMKPDNVIWGTLLGAC 318 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 318 (511)
|..|...|.+.+..++|.++++.|.++++ .....|...++.+.+..+-++|..++.++ |.+-......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999999666 66778999999999999999999999876 3222444556666677
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
.+.|+.+++..+|+..+.-.|.....|..++++-.+.|+.+.+..+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999987764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-06 Score=74.98 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=95.6
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCc--hhHH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA-CRVHRN--AEMG 327 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 327 (511)
.++.+++...+....+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777665 23456788888999999999999999999887 4555 56677777776 466676 5899
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
.++++++.+.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999877443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-06 Score=77.16 Aligned_cols=182 Identities=9% Similarity=-0.038 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe----eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV----SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYI 244 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 244 (511)
....+..++..|.+.|++++|...|+++.. |+. .+|..+..+|...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455666777778888888888888887654 221 24566777788888888888888888764321111 1344
Q ss_pred HHHHHHhcc--------CCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 010405 245 AVLSACSHL--------GWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315 (511)
Q Consensus 245 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 315 (511)
.+..++... |+.++|.+.|+.+.+. .|+. ..+..+.... ...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 444445443 6677778887777762 2332 2222221110 000000 00112455
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..+...|++++|...++++.+..|++ +..+..++.+|.+.|++++|..+++.+..+.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66889999999999999999976654 4688899999999999999999999887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-05 Score=75.21 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEP-NSAILVSLLSACAQLG-ALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
++..+-..+...++.++|+.++.++.+. .| +..+|+....++...+ ++++++..++.+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444445555566666666666666653 23 3334444444444444 3556666665555543 2233444444333
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
+.+.|+. ..++++.+++++.+...+ |..+|....-++...|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333331 013444445444443222 3444444444444555555555555
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CchhHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRA---GL----LEEAENFIAS-MPMKP-DNVIWGTLLGACRVH----RNAEMGQRI 330 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 330 (511)
+++.+. -+-+...|+.....+.+. |. .+++.++..+ +...| |...|+.+...+... ++..+|..+
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 555541 112233343333333322 11 2345555533 34445 566787777777663 344668888
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETL------------------KGENAEEVRKTMR 369 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 369 (511)
+.++...+|.++.+...|++.|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88888888888888889999998643 2356777777773
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.9e-08 Score=57.50 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=26.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 169 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-05 Score=75.10 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=189.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChh---------------
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV--------------- 74 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------- 74 (511)
|......+..++.+..-+++|-.+|+++..+|- .+..|-+..-+.+|+++-+-.-...++
T Consensus 647 de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 647 DEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred cHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh
Confidence 444455556666666677777777777765442 222333333344444443322110000
Q ss_pred ------------HHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh
Q 010405 75 ------------SWNSILGGLVRFGSVDDACRVFNQMPKRSLV--SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140 (511)
Q Consensus 75 ------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 140 (511)
..-..+.+......|..|..+++.+...++. -|..+...|+..|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------- 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------- 792 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------
Confidence 0111223334456667777777766655443 25566677777777777777764431
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCC
Q 010405 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220 (511)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 220 (511)
.++-.|..|.+.|+++.|.++-.+. .|.+.....|-+-..-.-+.|++.+|.++|-.+..|+. .|..|-++|.
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~ 865 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGL 865 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCc
Confidence 2444566677777777776654433 23333445555555566667777777777776666653 4667777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
.+..+++..+-... .-..|...+..-+...|++..|...|-+..+ |.+-+.+|-..+.|++|.++-+
T Consensus 866 ~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 866 DDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred chHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 77777776653221 1134555666777788999888887766543 5567778888888888888876
Q ss_pred hCCCC----CCHHHHHHHH------HHHHhcCc-------------hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 301 SMPMK----PDNVIWGTLL------GACRVHRN-------------AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 301 ~~~~~----p~~~~~~~ll------~~~~~~g~-------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
.-+-. .-...|.--+ ..+.++|- ++-|..+.+-..+.. -+.+...++.-+...|+
T Consensus 933 tegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk 1010 (1636)
T KOG3616|consen 933 TEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGK 1010 (1636)
T ss_pred ccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccc
Confidence 65211 0112332221 22333443 444444444333322 23566777778889999
Q ss_pred chHHHHHHHHHHhCC
Q 010405 358 GENAEEVRKTMRKRK 372 (511)
Q Consensus 358 ~~~A~~~~~~m~~~g 372 (511)
+++|.+.+-+..+.+
T Consensus 1011 ~edaskhyveaikln 1025 (1636)
T KOG3616|consen 1011 FEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhhHhhHHHhhcc
Confidence 999998887776644
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.1e-05 Score=75.59 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCc
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 358 (511)
...+.+.+.+..++|..-+.+. .+.| ....|......+...|..++|.+.|..+..++|+++.....++.++.+.|+-
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence 3344445555555555444333 2222 2333443334455666777777777777777777777777777777777766
Q ss_pred hHHHH--HHHHHHhCC
Q 010405 359 ENAEE--VRKTMRKRK 372 (511)
Q Consensus 359 ~~A~~--~~~~m~~~g 372 (511)
.-|.. ++..+.+.+
T Consensus 735 ~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLD 750 (799)
T ss_pred chHHHHHHHHHHHhhC
Confidence 65555 666665533
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-05 Score=70.24 Aligned_cols=343 Identities=12% Similarity=0.091 Sum_probs=207.2
Q ss_pred HHHHHhcCChHHHHHHHhcCC------CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCC
Q 010405 18 IQFYSVCGRVRDARWVFDESD------DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGS 88 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 88 (511)
+.-+....++..|+.+++--. +.++..| +.-++.+.|++++|+..|.-+.+ ++...+-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 344555678899999887433 1233344 45677899999999999987765 566777778777778899
Q ss_pred HHHHHHHHhhCCCC---------------Chh---HH-----------HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 010405 89 VDDACRVFNQMPKR---------------SLV---SW-----------VVLISGFAQNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 89 ~~~A~~~~~~~~~~---------------~~~---~~-----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
+.+|..+-.+.++. |.. ++ -+|.+.....-.+.+|+++|.+.+.. .|+-
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey 184 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEY 184 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhh
Confidence 99999988777641 111 11 12223333334577888888887764 4555
Q ss_pred hHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh--cCCHHHH--HHHHHhcC----------CCC
Q 010405 140 AILVSLLS-ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK--CGSIDLA--MQVFHSYG----------DKD 204 (511)
Q Consensus 140 ~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A--~~~~~~~~----------~~~ 204 (511)
...+.-+. +|.+..-++-+.+++.--++. ++.++..-|....-..+ .|+..++ .++-+... +.|
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 55555444 345666677777777666654 33344444443333332 2332222 11222111 112
Q ss_pred eee---------------------hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HhccCCHHH
Q 010405 205 VSA---------------------YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA-----CSHLGWVEK 258 (511)
Q Consensus 205 ~~~---------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~~~g~~~~ 258 (511)
.+. --.++--|.+.++..+|..+.+++.- ..|-......+..+ ......+.-
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 221 23344557788999999988776532 23433333333322 112223456
Q ss_pred HHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 259 GFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAENFIASMP--MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
|.+.|+..-+ .+...|. .--.++...+.-..++++.+-.++.+. +..|..---.+..+.+..|++.+|+++|-++.
T Consensus 342 AqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 342 AQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 7777766654 3443332 223455666666667888888877762 22333333357888999999999999998888
Q ss_pred hcCCCCchhHH-HHHHHHHHcCCchHHHHHHHHH
Q 010405 336 ESDQNHDGRYI-LLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 336 ~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 368 (511)
..+-.+..+|- .|++.|.+.++.+-|..++-++
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 76644555554 7789999999999998776544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.5e-06 Score=79.81 Aligned_cols=243 Identities=12% Similarity=0.038 Sum_probs=178.3
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 010405 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 191 (511)
.-+.+.|+..+|.-+|+...+.+ +-+...|.-|....+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888887764 4467888888888888888888888888888874 446777888888888888888
Q ss_pred HHHHHHHhcCCC------------CeeehHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 192 LAMQVFHSYGDK------------DVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 192 ~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
.|.+.++.-... +...-+. ..+..........++|-++.. .+.++|......|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888765220 1000000 111222233455666666654 4544677777777777888999999
Q ss_pred HHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 259 GFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
|...|+.+.. +.|+ ...||.|...++...+.++|..-|++. .++|+- .++..|.-+|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999986 5664 788999999999999999999999987 788865 478888889999999999999999988
Q ss_pred hcCCCC----------chhHHHHHHHHHHcCCchHH
Q 010405 336 ESDQNH----------DGRYILLSNIYVETLKGENA 361 (511)
Q Consensus 336 ~~~p~~----------~~~~~~l~~~~~~~g~~~~A 361 (511)
.+.+.+ ..+|..|=.++.-.++.|-+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 865541 13555555555555555533
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00027 Score=78.18 Aligned_cols=321 Identities=10% Similarity=0.005 Sum_probs=200.7
Q ss_pred HHHHHcCChHHHHHHHccCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHCCChhHH
Q 010405 50 NGYVRNGEILEGLKLFDKMPQRNDVS--WNSILGGLVRFGSVDDACRVFNQMPK----RSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 123 (511)
..+...|++.+|..........+... ...........|+++.+...++.++. .+..........+...|++++|
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 33455566666665555544332111 11122334567888888888888752 2333334455666788999999
Q ss_pred HHHHHHHHHCCC------CCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHH
Q 010405 124 LALFREMQSLDL------EPN--SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSID 191 (511)
Q Consensus 124 ~~~~~~m~~~~~------~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~ 191 (511)
..++......-- .|. ......+...+...|+++.|...++...+.-...+ ....+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 999987754310 111 11222233456678999999999998876421212 234566777788899999
Q ss_pred HHHHHHHhcCC-------CC--eeehHHHHHHHHHcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhccCC
Q 010405 192 LAMQVFHSYGD-------KD--VSAYTSAIFGLAMNGHSIEAFELFENMKSK----GIS--P-DSISYIAVLSACSHLGW 255 (511)
Q Consensus 192 ~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~ 255 (511)
+|...+++... +. ..++..+...+...|++++|...+++.... +.. | ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999887653 11 124455666788899999999998887542 211 1 12334445556677899
Q ss_pred HHHHHHHHHHchhhcC-CCC--CHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHH-----HHHHHHhcCc
Q 010405 256 VEKGFYYFHSMFDVHG-IKP--ELDHYACMVDLLGRAGLLEEAENFIASM----PMKPDNVIWGT-----LLGACRVHRN 323 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~-----ll~~~~~~g~ 323 (511)
+++|...+........ ..+ ....+..+...+...|++++|.+.+++. ........+.. .+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 9999999888765211 112 2334555677888999999999888765 11111111111 1233456889
Q ss_pred hhHHHHHHHHHhhcCCCCchh----HHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 AEMGQRIGNMLIESDQNHDGR----YILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.|...+.......+..... +..++.++...|++++|...+++...
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987766532222211 45778889999999999999988765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00031 Score=72.60 Aligned_cols=253 Identities=13% Similarity=0.092 Sum_probs=152.0
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010405 87 GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 166 (511)
++++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. -|+..|..++.++.+.|.+++-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334444444333332 357999999999999999998877442 367789999999999999999999999888
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------CCeeehHHHHHHHHHcCChHH
Q 010405 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----------------------KDVSAYTSAIFGLAMNGHSIE 223 (511)
Q Consensus 167 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~ 223 (511)
+..-+|.+. +.|+-+|++.+++.+-++.+..-.. .++.-|..+...+...|++..
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 887666644 5788999999998887665431100 133335555555555666655
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 010405 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI--KPELDHYACMVDLLGRAGLLEEAENFIAS 301 (511)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 301 (511)
|.+.-++.. +..||.-+-.+|...+.+..|. | .|+ .....-..-|+..|-..|.++|-..+++.
T Consensus 1239 AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 555444321 4456666666666555544332 1 232 22344455677777777777777777766
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 302 M-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 302 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
. +.+. ....|+-|.-.|.+-+ +++..+.++-.-.. ...--+++++..+.-|.+..-++.+-.
T Consensus 1305 ~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 4432 3345555554454432 33333333322210 111135666666667777666665443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-05 Score=77.69 Aligned_cols=238 Identities=16% Similarity=0.179 Sum_probs=148.8
Q ss_pred CcchHHHHH--HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC------------CChhH
Q 010405 10 DVFVKNSLI--QFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ------------RNDVS 75 (511)
Q Consensus 10 ~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~ 75 (511)
|..+-.+++ +.|.--|++|.|.+-.+-+. +...|..|.+.|.+..+.+-|.-++..|.. .+..+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 344444554 34666688888877665543 456799999999999999888888877763 11122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 155 (511)
-....-.....|.+++|+.+|.+-.. |..|=..|...|.+++|+++-+.=-+-.+ ..||.....-+...++.
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDI 874 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccH
Confidence 22333334567888888888877544 34455667777888888776543222111 23455555555556666
Q ss_pred HHHHHHHHHHH----------HcC---------CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHH
Q 010405 156 DYGNWVYSYIQ----------KKC---------IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216 (511)
Q Consensus 156 ~~a~~~~~~~~----------~~~---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 216 (511)
+.|+++|++.- ... -..|...|.......-..|+++.|+.+|.... -|-+++...+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C 949 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKC 949 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEe
Confidence 66666655421 110 12345566666666667788888888887654 3556666666
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
-.|+.++|-++-++- | |......|.+.|...|++.+|..+|.+...
T Consensus 950 ~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 677777777766532 2 444444577778888888888877766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-06 Score=69.65 Aligned_cols=121 Identities=9% Similarity=-0.025 Sum_probs=80.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM 304 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 304 (511)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 23443 44456666777777777777777765 12334667777777777777777777777776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 305 KP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 305 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
.| +...+..+..++...|+.++|+..++++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 5566777777777778888888888888777777776666555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-06 Score=70.37 Aligned_cols=107 Identities=12% Similarity=-0.026 Sum_probs=91.3
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
.+++...+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555544 3454 4556788899999999999999987 4555 66788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999887644
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.2e-06 Score=80.83 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=158.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 169 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
+++|-...-..+.+.+.+.|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||+.-|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34666677788999999999999999999976 4688889999999999999999988877 4789999999999
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 326 (511)
..-...-+++|+++++..... .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999998877652 1122223334578999999999764 5555 56688888888889999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
|.+.|.....++|++...|+.+..+|.+.|+-.+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.4e-06 Score=82.42 Aligned_cols=222 Identities=11% Similarity=0.048 Sum_probs=104.5
Q ss_pred HHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHH
Q 010405 49 INGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 49 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 126 (511)
...+.+.|-...|+.+|++. ..|..+|.+|...|+-..|..+..+..+ |+...|..+.+.....--+++|.++
T Consensus 405 aell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHH
Confidence 33444444444555444443 2333444444444544444444433322 2334444444444444444555554
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-
Q 010405 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K- 203 (511)
Q Consensus 127 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~- 203 (511)
++..... +-..+.....+.++++++..-++.-.+.+ +....+|-.+..++.++++++.|.+.|..... |
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 4432211 11111111122445555555555444432 33444555555555566666666666655443 2
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHH
Q 010405 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283 (511)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 283 (511)
+..+||.+-.+|.+.++-.+|...+.+..+.+ .-+-..|...+....+.|.+++|++.+.++........|..+...++
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 33456666666666666666666666665554 22333344444445566666666666666554322222444444333
Q ss_pred H
Q 010405 284 D 284 (511)
Q Consensus 284 ~ 284 (511)
.
T Consensus 631 ~ 631 (777)
T KOG1128|consen 631 R 631 (777)
T ss_pred H
Confidence 3
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-05 Score=83.35 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=169.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ch-hHHHHH
Q 010405 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQR--------NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SL-VSWVVL 110 (511)
Q Consensus 41 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~l 110 (511)
+...|-.-|.-..+.++.++|.++++++... -...|.+++++-..-|.-+...++|++..+- |. ..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4567888898999999999999999888641 2457888888888888888889999998763 33 568889
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcC
Q 010405 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL--DSILCAALIDMYAKCG 188 (511)
Q Consensus 111 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g 188 (511)
...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+...-+.|..++.++.+. +|- ......-.+.+-.++|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcC
Confidence 99999999999999999999875 3346678888899999999889999999888876 232 3445566677778899
Q ss_pred CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHH
Q 010405 189 SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 189 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~ 258 (511)
+.++++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.|..=...|+-+.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 99999999998765 34568999999999999999999999999988877653 345555544344444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00027 Score=68.98 Aligned_cols=308 Identities=15% Similarity=0.171 Sum_probs=164.6
Q ss_pred HHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHHCCChhHH
Q 010405 49 INGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV--SWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 49 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A 123 (511)
+.-+...|++++|.+.-.++.. .|...+..=+-+..+.+++++|+.+.+.-...... -+.--.-+..+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 4566778999999998888765 45666777777888999999999877664432211 111223334578999999
Q ss_pred HHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHH---------------------
Q 010405 124 LALFREMQSLDLEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL-DSILCAAL--------------------- 180 (511)
Q Consensus 124 ~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l--------------------- 180 (511)
+..+. |..+ |..+...-...+.+.+++++|..+|+.+.+++.+. +...-..+
T Consensus 99 lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 99 LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 99987 3333 34466667788999999999999999998765421 11111111
Q ss_pred --------HHHHHhcCCHHHHHHHHHhc--------CCCCee-----e-----hHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 181 --------IDMYAKCGSIDLAMQVFHSY--------GDKDVS-----A-----YTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 181 --------i~~y~~~g~~~~A~~~~~~~--------~~~~~~-----~-----~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
.-.+...|++.+|+++++.. .+.|.. . --.|.-.+-..|+.++|..++...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 12233445555555555444 111100 0 111222333445555555555555444
Q ss_pred CCCCCHH----HHHHHHHHHhccCCH-H-HHHHHHHHchhhc----------CCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 235 GISPDSI----SYIAVLSACSHLGWV-E-KGFYYFHSMFDVH----------GIKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 235 g~~p~~~----t~~~ll~~~~~~g~~-~-~a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
. .+|.. .-|.|+ +...-.++ + .++..++...... .-.....--++++.+| .+..+.+.++
T Consensus 254 ~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~ 329 (652)
T KOG2376|consen 254 N-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVREL 329 (652)
T ss_pred c-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 2 12221 111121 11111111 1 0111111110000 0000000011222222 2344555555
Q ss_pred HHhCCC-CCCHHHHHHHHHH-HH-hcCchhHHHHHHHHHhhcCCCC-chhHHHHHHHHHHcCCchHHHHHHH
Q 010405 299 IASMPM-KPDNVIWGTLLGA-CR-VHRNAEMGQRIGNMLIESDQNH-DGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 299 ~~~~~~-~p~~~~~~~ll~~-~~-~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
-...+. .|.. .+.+++.. .. +......+..++....+..|.+ ..+...++.....+|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 330 SASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555532 2433 34444433 22 2225778888888888888876 3455577788899999999999998
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-05 Score=72.11 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=127.6
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-ee---e
Q 010405 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGD--KD-VS---A 207 (511)
Q Consensus 137 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~---~ 207 (511)
.....+..+...+...|+++.|...++.+.+... .+ ...+..+..+|.+.|++++|...|+++.+ |+ .. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3567788888999999999999999999988642 22 24677889999999999999999999865 32 22 3
Q ss_pred hHHHHHHHHHc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhH
Q 010405 208 YTSAIFGLAMN--------GHSIEAFELFENMKSKGISPDSI-SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278 (511)
Q Consensus 208 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 278 (511)
+..+..++... |+.++|.+.|+++... .|+.. ....+..... . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HH
Confidence 55556666654 7789999999999875 44432 2222211100 0 00000 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM----PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
...+...|.+.|++++|...+++. +..| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999988876 2233 345788888889999999999998888876555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00014 Score=68.77 Aligned_cols=209 Identities=9% Similarity=-0.036 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 75 SWNSILGGLVRFGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNG-RPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
++..+-..+...++.++|+.+.+++.+. +..+|+.....+...| ++++++..++++.+.. +.+..+|+....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4556666777889999999999998753 4457777777777777 6799999999998875 335667776666666
Q ss_pred hcCCH--HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHc---CCh-
Q 010405 151 QLGAL--DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN---GHS- 221 (511)
Q Consensus 151 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~- 221 (511)
+.+.. +.+..+.+.+++.. +-+..+|+...-++.+.|+++++++.++++.+ .|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 66653 67788888888775 45778888888888889999999999998876 4666787776665544 222
Q ss_pred ---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH
Q 010405 222 ---IEAFELFENMKSKGISPDSISYIAVLSACSHL----GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288 (511)
Q Consensus 222 ---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 288 (511)
+++++...+++.... -|...|+.+...+... +...+|...+....+ . -+.+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-~-~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-K-DSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-c-cCCcHHHHHHHHHHHHh
Confidence 356666666665432 2556676666666552 334556666666544 1 12345556667776664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-05 Score=79.56 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=104.7
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH
Q 010405 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282 (511)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 282 (511)
++..+-.|.....+.|..++|..+++...+. .|+ ......+...+.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4667777888888888888888888888774 555 44566677788888888888888888876 233346677788
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 283 VDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
..++.+.|++++|.++|++. ...|+ ...|..+..++...|+.++|...|+++.+...+-...|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88888888888888888887 23343 5678888888888888888888888888854433344443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-05 Score=67.77 Aligned_cols=153 Identities=8% Similarity=0.108 Sum_probs=113.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010405 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 181 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
+-.|.+.|+++......+.+..+. . .+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455778888777655554433321 0 1122566678888888877753 346778888889999999999999
Q ss_pred HHHHHchhhcCCCC-CHhHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 261 YYFHSMFDVHGIKP-ELDHYACMVDLL-GRAGL--LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 261 ~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
..|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 334 577788888864 67777 59999999887 4556 5667777888899999999999999999
Q ss_pred hhcCCCCchhH
Q 010405 335 IESDQNHDGRY 345 (511)
Q Consensus 335 ~~~~p~~~~~~ 345 (511)
++..|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99887765443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00069 Score=65.60 Aligned_cols=336 Identities=10% Similarity=-0.007 Sum_probs=216.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLD-VVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILG 81 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~ 81 (511)
++|.+.|+.=..+|++.|++++|++=-.+-. .|+ .-.|+....++.-.|++++|+.-|.+-.+ | |...++.+..
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQ 112 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHH
Confidence 3477788888888888888888876444333 233 34688888888888999999988888764 2 2222222222
Q ss_pred HH---------------------------------------------------HhcCCHHHHHHHHhhCC----------
Q 010405 82 GL---------------------------------------------------VRFGSVDDACRVFNQMP---------- 100 (511)
Q Consensus 82 ~~---------------------------------------------------~~~g~~~~A~~~~~~~~---------- 100 (511)
++ ....++..|.-++....
T Consensus 113 a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~ 192 (539)
T KOG0548|consen 113 AYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIE 192 (539)
T ss_pred hhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccc
Confidence 22 11111222222221110
Q ss_pred ------CC------------Ch----------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 010405 101 ------KR------------SL----------VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152 (511)
Q Consensus 101 ------~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 152 (511)
.| |. .-.-.+.++..+..+++.|++-+....... -+..-++....++...
T Consensus 193 ~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~ 270 (539)
T KOG0548|consen 193 ILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLER 270 (539)
T ss_pred cCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhc
Confidence 01 00 124556777778888899999888887754 3444455566678888
Q ss_pred CCHHHHHHHHHHHHHcCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHH
Q 010405 153 GALDYGNWVYSYIQKKCIKLD------SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 226 (511)
|...+....-...++.|...- .....-+..+|.+.++++.|+..|++...+-.. -....+....++++.
T Consensus 271 ~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 271 GKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALK 345 (539)
T ss_pred cHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHH
Confidence 888777776666666553211 112222455788889999999999985532111 112233444556666
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 010405 227 LFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM 304 (511)
Q Consensus 227 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 304 (511)
......- +.|.. .-...-...+.+.|++..|...|.++++ ..+-|...|....-+|.+.|.+.+|++-.+.. ..
T Consensus 346 ~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 346 EAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5555443 33432 2222335667889999999999999987 23556889999999999999999998876655 44
Q ss_pred CCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 305 KPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 305 ~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
.|+.. .|..=..++....+++.|.+.|.+.++.+|.+......+.+++..
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 55433 555555667777899999999999999999887666666555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-05 Score=64.15 Aligned_cols=95 Identities=9% Similarity=-0.011 Sum_probs=83.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
....-.+...+...|++++|..+|+-. ...| +..-|..|..++...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444556667788899999999999987 4556 56678888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010405 354 ETLKGENAEEVRKTMRK 370 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~ 370 (511)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-05 Score=67.01 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=81.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
-..+...|+.+....+........ .-|.......+......|++.+|...+.+... .-++|...|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 334444555555555544433211 11222333355555556666666666666554 344555666666666666666
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
+++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++.......+.++.+-..|..+-...|++++|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666555544 2333 33445555555666666666666666666655555556666666666666666665544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.5e-05 Score=78.19 Aligned_cols=233 Identities=8% Similarity=-0.002 Sum_probs=115.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
+...+..|+..|...+++++|.++.+...+ |+ +..|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 445566666666666666666666664432 22 23333344455555555554444 2221 1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAF 225 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 225 (511)
.....++..+..+...+... ..+...+..|..+|-+.|+.++|.++++++.+ .|+.+.|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 11112222222222233322 12233444555555555666655555555543 2444555555555555 555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 305 (511)
+++.+.... +...+++..+.++|..+.. ..+-+...+..+.... ...++..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------Hhhhccc
Confidence 555544332 3333445555555555544 1111111111111111 1111222
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
.-+.++-.+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 234455555566777778888888888888888877777777777765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-05 Score=76.51 Aligned_cols=349 Identities=12% Similarity=0.047 Sum_probs=203.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCC-----hhHHHHHHHHH
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN-----DVSWNSILGGL 83 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~ 83 (511)
..|..|...|...-+...|.+.|+... ..|..++..+...|++..+++.|..+.-..-+.+ ...|....-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 468888888888888888888888655 4567788889999999999999988844333322 12233344557
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHH--HHHHHhcCCHHHH
Q 010405 84 VRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL--LSACAQLGALDYG 158 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l--l~~~~~~~~~~~a 158 (511)
.+.++...|..-|+...+ +|...|..++.+|...|++..|+++|.+... ++|+. +|... ...-+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 778888888888887654 3667888999999999999999999988766 35544 23322 2224567888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHH-------hcCCHHHHHHHHHhcCC-----------CCeeehHHHHHHHHH---
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYA-------KCGSIDLAMQVFHSYGD-----------KDVSAYTSAIFGLAM--- 217 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~--- 217 (511)
...++..+... .......+.|...+. -.|-..+|..+|+.-.+ .+...|-.+..++.-
T Consensus 650 ld~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 650 LDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 88887776531 111122222222222 22333333333332211 122233332222111
Q ss_pred cC--ChH-HHHH-HHHHHHhCCCCC--------------------CHHHHHHHHHHHhc-------c-CCHHHHHHHHHH
Q 010405 218 NG--HSI-EAFE-LFENMKSKGISP--------------------DSISYIAVLSACSH-------L-GWVEKGFYYFHS 265 (511)
Q Consensus 218 ~g--~~~-~A~~-~~~~m~~~g~~p--------------------~~~t~~~ll~~~~~-------~-g~~~~a~~~~~~ 265 (511)
.. -+. -.+. ++.+....+.-| +..+|..++..|.+ . .+...|...+..
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 000 0000 111111111111 12223233222211 1 122345555555
Q ss_pred chhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 266 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
..+. ..-+...|+.|.-+ ...|.+.-|.--|-+. -..| ...+|..+.-.+....+++-|...|.++..+.|.+..
T Consensus 809 aV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~ 885 (1238)
T KOG1127|consen 809 AVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLV 885 (1238)
T ss_pred HHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhH
Confidence 5441 12234445555443 4456666555544332 2233 5667888877888899999999999999999999988
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHH
Q 010405 344 RYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
.|......-...|+.-++..++..
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888777777788877777777755
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0025 Score=65.56 Aligned_cols=351 Identities=16% Similarity=0.137 Sum_probs=188.1
Q ss_pred HhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcCCHH----HH
Q 010405 22 SVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGSVD----DA 92 (511)
Q Consensus 22 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~----~A 92 (511)
.+.|+.++|..+++... ..|..+...+-..|...+..++|..+|++..+ |+......+..+|.+.+++. .|
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887544 34777888888888888888888888888876 66666666777777776654 36
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHC-CCh---------hHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQN-GRP---------KEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
.+++...+++--..|+. ++...+. ..+ .-|.+.++.+.+.+ ---+..-...-+..+...|.+++|..+
T Consensus 134 ~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~ 212 (932)
T KOG2053|consen 134 LQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEF 212 (932)
T ss_pred HHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHH
Confidence 66676665554445543 3333332 112 22344455554433 111222222333445667778888887
Q ss_pred H-HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHH----------------cCChHHH
Q 010405 162 Y-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM----------------NGHSIEA 224 (511)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------------~g~~~~A 224 (511)
+ ....+.-...+...-+--++.+.+.+++.+..++-.++..++..-|...+..+.+ .+..+..
T Consensus 213 l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~ 292 (932)
T KOG2053|consen 213 LAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDEC 292 (932)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHH
Confidence 7 3333333334455556667777888888776666555544222113333322111 1112222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH---hccCCHHHHHHHHH-Hchhh--------------------------cCCCC
Q 010405 225 FELFENMKSKGISPDSISYIAVLSAC---SHLGWVEKGFYYFH-SMFDV--------------------------HGIKP 274 (511)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~-~~~~~--------------------------~~~~p 274 (511)
.+..++..... ....|.+-+.+. -.-|+.+++...|- +.-.. -+..+
T Consensus 293 ~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~ 369 (932)
T KOG2053|consen 293 IEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADD 369 (932)
T ss_pred HHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCC
Confidence 22222222111 111122222222 22345544332221 11000 00111
Q ss_pred CHh-------HHHHHHHHHHHcCCH-----HHHHHHHHhC------C------CCCCH---------HHHHHHHHHHHhc
Q 010405 275 ELD-------HYACMVDLLGRAGLL-----EEAENFIASM------P------MKPDN---------VIWGTLLGACRVH 321 (511)
Q Consensus 275 ~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~~------~------~~p~~---------~~~~~ll~~~~~~ 321 (511)
+.. -+.+.+....-.|.+ +.-..++++. + .-|.. .+.+.|+..+.+.
T Consensus 370 ~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rkt 449 (932)
T KOG2053|consen 370 DSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKT 449 (932)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhc
Confidence 111 022222222223321 1122222111 1 11221 2346677888888
Q ss_pred Cchh---HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010405 322 RNAE---MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376 (511)
Q Consensus 322 g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 376 (511)
++.. +|+-+++......|.|..+-..|+.+|.-.|-...|.++++.+.-+.+..+
T Consensus 450 nd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 450 NDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred CcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 7755 677777777778999988888999999999999999999999987776644
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00021 Score=63.05 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 010405 77 NSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153 (511)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 153 (511)
..+-..+.-.|+-+.+..+..+... .|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4444555556666665555555321 233445556666667777777777776666543 556667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
++++|..-|.+..+.. +-+....|.|.-.|.-.|+.+.|..++..... .|...-..+.......|++++|.++..+
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777776666653 33455566666666666777777777665432 3555555666666667777777666544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00093 Score=59.05 Aligned_cols=249 Identities=13% Similarity=0.048 Sum_probs=127.5
Q ss_pred HHhcCCHHHHHHHHhhCC-C-CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH-
Q 010405 83 LVRFGSVDDACRVFNQMP-K-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN- 159 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~- 159 (511)
|.-.|++..+...-+... . .++..---+-++|...|++...+.- .... -.|....+..+......-++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 333455555554433322 2 2333333455666666655433221 1111 1222333333333333333333332
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (511)
.+.+.+.......+......-...|...|++++|.+..+... +..+.-.=+..+.+..+.+-|.+.+++|.+-. +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 233444443333343444444556777788888877777632 22222222344556667777777777776532 4
Q ss_pred HHHHHHHHHHHhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 010405 240 SISYIAVLSACSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGT 313 (511)
Q Consensus 240 ~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 313 (511)
..|.+-|..++.+ .+.+..|.-+|++|.+ ..+|++.+.+-...+....|++++|..++++. ....++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5566655555432 3456677777777765 45666666666666666777777777777665 22234455555
Q ss_pred HHHHHHhcCch-hHHHHHHHHHhhcCCCCc
Q 010405 314 LLGACRVHRNA-EMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 314 ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 342 (511)
++..-...|.. +.-.+...++....|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 55444444433 444556666666666543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0016 Score=67.61 Aligned_cols=298 Identities=15% Similarity=0.126 Sum_probs=153.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCC-CCChhH-----HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 010405 40 LDVVSWNSMINGYVRNGEILEGLKLFDKMP-QRNDVS-----WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113 (511)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 113 (511)
.|+..-...+.++..++-+.+-+++++++. ++++++ -|.|+-...+ .+.....+..+++..-|.. .+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~i 1057 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEI 1057 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHH
Confidence 466667778889999999999999998885 343332 2333322222 2333444444444332211 12233
Q ss_pred HHHCCChhHHHHHHHHHHHCC---------------------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 010405 114 FAQNGRPKEALALFREMQSLD---------------------LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~---------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 172 (511)
...++-+++|..+|++.--.+ -.-.+..|+.+..+-.+.|...+|.+-|-+ ..
T Consensus 1058 ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence 344455556665555431100 001223344444444444444444333211 12
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
|+..|.-.++...+.|.+++-.+++....+ +....=+.+|-+|++.++..+..+++ ..||......+.+-|
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRC 1204 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHH
Confidence 444555555555555555555555443332 12222344555555555554444433 234555555555555
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH------------------
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG------------------ 312 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~------------------ 312 (511)
...|.++.|.-+|... ..|..|...+...|.++.|.+--++.. +..+|.
T Consensus 1205 f~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrlAQiC 1271 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRLAQIC 1271 (1666)
T ss_pred hhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhHHHhc
Confidence 5555555555544433 245566666666777766666555442 333443
Q ss_pred ------------HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 313 ------------TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 313 ------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
-|+.-|...|-+++-+.+++..+.+.......|.-|+-.|++- +.++..+.++..
T Consensus 1272 GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1272 GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 3445555666666666666666666666666777777777665 445555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00027 Score=71.44 Aligned_cols=259 Identities=14% Similarity=0.110 Sum_probs=148.4
Q ss_pred CCChhHHHHHHH--HHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C----------Ch-
Q 010405 39 DLDVVSWNSMIN--GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-R----------SL- 104 (511)
Q Consensus 39 ~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~----------~~- 104 (511)
.-|..+-.+++. -|.--|+.+.|.+-.+-+ .+..+|..+.+++.+..++|-|.-.+-.|.. + |.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 446666666653 356667777776665544 3456788888888888877777777666642 0 11
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..-.-..-.-.+.|..++|+.+|++-++ |..|=..|...|.+++|.++-+.--+..+ ..||.....-+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYL 868 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHH
Confidence 1111122223456677777777776654 22333445566777777766443222111 12333344444
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
-..++++.|++.|++...+-...+..|. .++.....+.+++ -|...|..........|++|.|+.+|.
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHH
Confidence 4566777777777755432211111111 1111111122222 244555556666667788888888887
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.... |-+++...+-+|+.++|-++-++-+ |......|...|-..|++.+|..+|.++..
T Consensus 937 ~A~D----------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 937 SAKD----------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred Hhhh----------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7764 4456667777788888887777765 555555677777777888888777776655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.3e-05 Score=73.05 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=101.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRV 320 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 320 (511)
...|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +......-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445667777788999999999999872 355 4556888888889999999998876 3334 55556555666899
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-06 Score=51.69 Aligned_cols=35 Identities=43% Similarity=0.758 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00047 Score=66.09 Aligned_cols=112 Identities=16% Similarity=0.044 Sum_probs=49.4
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
.+...|++++|+..++.+... .+-|..........+...++..+|.+.++.++... |......-.+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 333444555555555444433 12233333333444444555555555555444431 1113334444445555555555
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHH
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 226 (511)
|+.++++... .|...|..|..+|...|+..++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555444432 234445555555555554444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0006 Score=72.03 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=114.1
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 010405 39 DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115 (511)
Q Consensus 39 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 115 (511)
+.+...|..|+..+...+++++|.++.+...+ |+. ..|-.+...|.+.++.+++..+ .++....
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 34667888999999999999999999886654 433 2333333466667775555444 3444444
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
...++.-+..++..|... .-+..++..+..+|.+.|+.+++.++++++++.. +-|+.+.|.+...|+.. ++++|++
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 444554444444455443 2344577778888888888888888888888876 55778888888888888 8888888
Q ss_pred HHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 196 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
++.+.. ..|...+++.++.++|.++...
T Consensus 171 m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 171 YLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 776543 3366666777777777777664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00016 Score=69.20 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~ 318 (511)
.-|..-+ .+...|..+.|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++
T Consensus 308 a~YG~A~-~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRAL-QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3444433 34567899999999999887 34456777778889999999999999999987 56676 56777788899
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.+.|++.+|+++++.....+|+++..|..|+.+|...|+..+|.....++.
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988886664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-06 Score=51.02 Aligned_cols=35 Identities=43% Similarity=0.691 Sum_probs=31.3
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47899999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-05 Score=63.83 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++.+..|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 445566777777888888888888776 3334 55677777777888888888888888888888888888888888888
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010405 354 ETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~ 371 (511)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0004 Score=72.42 Aligned_cols=143 Identities=11% Similarity=0.045 Sum_probs=117.7
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYIA 245 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 245 (511)
.+.++..+..|.......|++++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 466788999999999999999999999999876 4 4456788899999999999999999999885 455 455666
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLG 316 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 316 (511)
+..++.+.|+.++|..+|+++.. ..+-+...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 67788999999999999999987 22334788999999999999999999999987 33455666665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.3e-05 Score=71.72 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
.+...++++.|..+|+++.+.++.....++..+...++..+|++++.+..+.. +-+...+..-...+...++.+.|..+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33334444444444444444433333344444444444444444444444321 22333333333334444444444444
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 257 Ak~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 44444431 223334444444444444444444444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0007 Score=59.35 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHH---HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA---IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
++..++-+...+|+.+.|..+++.+..+=.-++... ..-+-..|++++|+++++..++.+ +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344444455556777777777666554222222111 112334788889999999888875 3356677666666666
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCchhHH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRV---HRNAEMG 327 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a 327 (511)
.|+--+|++-+....+ .+..|...|.-+.+.|...|++++|.--++++ -.+| ++..+..+...+.. ..+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777788888888876 56788999999999999999999999999988 4456 44555566655332 3467789
Q ss_pred HHHHHHHhhcCCCCchhHH
Q 010405 328 QRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~ 346 (511)
.+.|.+.+++.|.+...+.
T Consensus 211 rkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhChHhHHHHH
Confidence 9999999999986554444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00019 Score=74.09 Aligned_cols=322 Identities=13% Similarity=0.088 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----hHHHHHHHHH
Q 010405 43 VSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL-----VSWVVLISGF 114 (511)
Q Consensus 43 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~ 114 (511)
..|..|...|...-+...|.+.|++..+ .|...+..+.+.|++..+++.|..+.-...+++. ..|-...-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4577777777666677777777777765 3455667777778888888877777444333322 1233444556
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 194 (511)
...++..+|..-|+...+.. +.|...|..+..+|...|....|.++|.++.... |.+...---..-+-+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 67777777777777776654 3366777788888888888888888887776643 112222122223345567777777
Q ss_pred HHHHhcCCC----------CeeehHHHHHHHHHcCChHHHHHHHHH-------HHhCCCCCCHHHHHHHHHHHh------
Q 010405 195 QVFHSYGDK----------DVSAYTSAIFGLAMNGHSIEAFELFEN-------MKSKGISPDSISYIAVLSACS------ 251 (511)
Q Consensus 195 ~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~g~~p~~~t~~~ll~~~~------ 251 (511)
..+..+... -..++-.+...+...|-..+|...++. .......-+...|..+-.+|.
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 776655420 111222222222222322222222222 221111112222222222221
Q ss_pred -----------------ccCCH---H---HHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cC----CHHHHHHHHH
Q 010405 252 -----------------HLGWV---E---KGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AG----LLEEAENFIA 300 (511)
Q Consensus 252 -----------------~~g~~---~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g----~~~~A~~~~~ 300 (511)
..+.. | .|.+.+-.-.+ +..+..+|..|+.-|.+ +| +...|..-+.
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 11111 1 01111111111 11122233333333333 11 1224444444
Q ss_pred hC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 301 SM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 301 ~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.. ... .+..+|+.|.-. ...|++.-+.-.|-+....+|.+..+|..++-.+.+..+++-|...+.....
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 43 222 345566555443 5556777777777777777777777777777777777777777777776654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.3e-06 Score=49.62 Aligned_cols=33 Identities=33% Similarity=0.621 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 137 (511)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.013 Score=57.13 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=94.3
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
.+|-..+..-.+..-...|..+|.+..+.+..+ +.....+++.-++ +++.+-|.++|+.-.+.+| -++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 356666666666666777777777777766666 4455556665444 4667777777776665333 22334455666
Q ss_pred HHHHcCCHHHHHHHHHhC-C--CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC----chhHHHHHHHHHHc
Q 010405 285 LLGRAGLLEEAENFIASM-P--MKP--DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH----DGRYILLSNIYVET 355 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 355 (511)
-+...++-..|..+|++. + +.| ....|..+|.--..-|+...+.++-++....-|.+ ...-..+++.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 667777777777777766 1 223 23577777777777777777777777766644411 12233445555555
Q ss_pred CCchHHHHHHH
Q 010405 356 LKGENAEEVRK 366 (511)
Q Consensus 356 g~~~~A~~~~~ 366 (511)
+.+..-..-++
T Consensus 524 d~~~c~~~elk 534 (656)
T KOG1914|consen 524 DLYPCSLDELK 534 (656)
T ss_pred ccccccHHHHH
Confidence 55444333333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0087 Score=58.30 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=60.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILG 81 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~ 81 (511)
+.|..+|+.||+-+... .+++++..++++.. .....|..-|..-.+..+++...++|.+... -+...|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45888999999988777 99999999998773 3667899999999999999999999998764 45666666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0021 Score=56.89 Aligned_cols=248 Identities=13% Similarity=0.041 Sum_probs=120.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC-C-CChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD-D-LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF 86 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 86 (511)
|+-..|+.-=.. -.|.+..++..-.... . .++..---+-++|...|.+...+.-...-..|.......+-.....-
T Consensus 8 ~~d~LF~iRn~f--Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 8 PEDELFNIRNYF--YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELE 85 (299)
T ss_pred cchhHHHHHHHH--HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCc
Confidence 443444433333 3466666665443222 2 33334444556666666654444333332223333332222222223
Q ss_pred CCHHHHH-HHHhhCCCC----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 87 GSVDDAC-RVFNQMPKR----SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 87 g~~~~A~-~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
++.++-. ++.+.+..+ +......-...|++.|++++|++...... +......=...+.+..+++.|++.
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 233333322 21222222345777788888877765521 222333334445666677777777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHhcCCCC---eeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 162 YSYIQKKCIKLDSILCAALIDMYA----KCGSIDLAMQVFHSYGDKD---VSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
+++|.+.. +..+.+-|..++. ..+.+.+|.-+|++|.++. ..+.|-+..++...|++++|..+++..+..
T Consensus 160 lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 160 LKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777642 3344444444443 3455666777777766633 333344455555666677777666666655
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHchh
Q 010405 235 GISPDSISYIAVLSACSHLGWVEKG-FYYFHSMFD 268 (511)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~~ 268 (511)
..+ ++.|...++-+-...|...++ .+.+.++..
T Consensus 237 d~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 237 DAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 332 455555555544455544332 334444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00021 Score=58.75 Aligned_cols=113 Identities=11% Similarity=0.014 Sum_probs=86.4
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 010405 227 LFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM 304 (511)
Q Consensus 227 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 304 (511)
+|++.... .|+ ......+...+...|+.++|.+.|+.+... .+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555443 343 344556677788889999999999888762 2446778888899999999999999988876 34
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 305 KP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 305 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
.| +...+..+...+...|+.++|...++++.+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5667777778889999999999999999999997754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=48.37 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=25.0
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (511)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.01 Score=56.02 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESD 38 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~ 38 (511)
+|..+...-..+|+.+-|..+.+.=+
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep 27 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEP 27 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCC
Confidence 57778888889999999999987533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=54.83 Aligned_cols=92 Identities=18% Similarity=0.123 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
+..+...+...|++++|.+.+++. ...| +...+..+...+...+++++|.+.++......|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888776 3344 33566677777888889999999999988888888778888888999999
Q ss_pred CchHHHHHHHHHHh
Q 010405 357 KGENAEEVRKTMRK 370 (511)
Q Consensus 357 ~~~~A~~~~~~m~~ 370 (511)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988877764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00052 Score=57.12 Aligned_cols=114 Identities=12% Similarity=-0.012 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 326 (511)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665322111 1223334556666677777777777665 212332 123334555667777777
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
|+..++... ..+..+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777775532 2233345566777777777777777777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0018 Score=56.91 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=125.0
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL-SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 286 (511)
|..++-+....|+.+.|...++++... + |.+.-...+= --+...|..++|.++++.+.++ -+.|..++-.-+.+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 334455667789999999999998775 3 4443222221 1245679999999999999973 355677777777777
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC---CchHH
Q 010405 287 GRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL---KGENA 361 (511)
Q Consensus 287 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 361 (511)
-..|+.-+|++-+.+. .+-.|...|.-+...|...|+++.|.-.+++++-..|.++..+..++..+...| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888888877665 344699999999999999999999999999999999999999999999887766 45567
Q ss_pred HHHHHHHHhCCC
Q 010405 362 EEVRKTMRKRKI 373 (511)
Q Consensus 362 ~~~~~~m~~~g~ 373 (511)
.+++.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 778877766443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.001 Score=55.32 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHH
Q 010405 117 NGRPKEALALFREMQSLDLEPN---SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD--SILCAALIDMYAKCGSID 191 (511)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~ 191 (511)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+. ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555554432 111 11222233444445555555555555554431111 112222344444445555
Q ss_pred HHHHHHHhcCCC--CeeehHHHHHHHHHcCChHHHHHHHH
Q 010405 192 LAMQVFHSYGDK--DVSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 192 ~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
+|+..++....+ ....+......|...|+.++|...|+
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555554443221 11223333444444444444444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.7e-05 Score=57.99 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 010405 289 AGLLEEAENFIASM-PMKP---DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 364 (511)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777666665 1122 344555566777777777777777777 555555556666667777777777777777
Q ss_pred HHH
Q 010405 365 RKT 367 (511)
Q Consensus 365 ~~~ 367 (511)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.2e-05 Score=45.70 Aligned_cols=31 Identities=39% Similarity=0.665 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDL 135 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 135 (511)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888887777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00028 Score=56.30 Aligned_cols=91 Identities=13% Similarity=-0.025 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHH
Q 010405 280 ACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNI 351 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 351 (511)
..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555444 11121 1233334444555555555555555555544432 2344455555
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 010405 352 YVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~ 370 (511)
+.+.|++++|.+.++++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 5555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00037 Score=55.59 Aligned_cols=104 Identities=9% Similarity=-0.014 Sum_probs=68.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLL 315 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll 315 (511)
++..+...+...|++++|...|..+.+...-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566677777777777777765221111 1345556777777888888888877765 22233 34566666
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
.++...|+.++|...++++.+..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.1e-05 Score=45.06 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=22.4
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
++||+++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=52.12 Aligned_cols=64 Identities=22% Similarity=0.098 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL-KGENAEEVRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 370 (511)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46778888888999999999999999999999999999999999999999 79999999987765
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0007 Score=58.23 Aligned_cols=82 Identities=11% Similarity=-0.042 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666777777777777777665 22222 3466777777888888888888888888888888888888888
Q ss_pred HHHHcCC
Q 010405 351 IYVETLK 357 (511)
Q Consensus 351 ~~~~~g~ 357 (511)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877766
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=50.45 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=47.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778888899999999988888888888888888888999999998888887653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00037 Score=67.40 Aligned_cols=105 Identities=10% Similarity=-0.066 Sum_probs=85.8
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
-...+...|++++|+..|.++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345567789999999999999872 2335778888899999999999999999887 5555 56678888888999999
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
+++|+..++++++++|+++.....+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999887766655443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00088 Score=50.34 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=52.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
|..+...+...|++++|...|++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455556666666666666666665542 2233455555666666666666666666665543 2233455555566666
Q ss_pred cCCHHHHHHHHHhc
Q 010405 187 CGSIDLAMQVFHSY 200 (511)
Q Consensus 187 ~g~~~~A~~~~~~~ 200 (511)
.|++++|...|...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.057 Score=56.02 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=85.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH--
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL-- 192 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-- 192 (511)
.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|+.+.+. .|+......+..+|.+.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444433322 4455555555555555555555555555544 2334444444455555444332
Q ss_pred --HHHHHHhcCCCCeeehHHHHHHHHHcC-C---------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHH
Q 010405 193 --AMQVFHSYGDKDVSAYTSAIFGLAMNG-H---------SIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 193 --A~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
|.++++..++.--.-| ++++.+.+.- . ..-|.+.++.+.+.+ ..-+..-...-+......|..++|
T Consensus 131 kaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 3344443332222222 2222222211 1 123445555555443 111222222223345667778888
Q ss_pred HHHHH-HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 260 FYYFH-SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 260 ~~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
..++. ...+ .-..-+...-+.-++.+...+++.+-.++-.++
T Consensus 210 l~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 210 LEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88773 3322 222223334445667777778877766665544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.11 Score=52.48 Aligned_cols=284 Identities=14% Similarity=0.075 Sum_probs=128.6
Q ss_pred CChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C---hhHHHHHHHHHHHCCChhHHHHHHHHH
Q 010405 56 GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR--S---LVSWVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 56 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
|++++|.++|-+|.++|. .|.++.+.|++-...++++.-... | ..+|+.+...++....|++|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555543 344555555555555555442211 1 134555555555555555555544332
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHH
Q 010405 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210 (511)
Q Consensus 131 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 210 (511)
.. ....+.++.+..++++-+.+- ..++.+....-.+.+++...|.-++|.+.|-+-..|. +
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----a 883 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----A 883 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----H
Confidence 10 011222233322222222111 1234455566667777777777777777766655442 2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc---CCCCCH
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGIS-----------PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH---GIKPEL 276 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~ 276 (511)
.+..|...++|.+|.++-++..-..+. .+..+. --|..+.+.|..-.|-+++.+|.+.. +.+|-.
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 344455555555555554432211000 011111 12344555555555555555554321 222211
Q ss_pred ----hHHHHH-HHHH----------HHcCCHHHHHHHHHhCC------C----CCCHHHHHHHHHH--HHhcCchhHHHH
Q 010405 277 ----DHYACM-VDLL----------GRAGLLEEAENFIASMP------M----KPDNVIWGTLLGA--CRVHRNAEMGQR 329 (511)
Q Consensus 277 ----~~~~~l-i~~~----------~~~g~~~~A~~~~~~~~------~----~p~~~~~~~ll~~--~~~~g~~~~a~~ 329 (511)
.+..+| +.-+ -+.|..++|..+++..- + -.-...|.-+|-+ -...|.++.|++
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~ 1042 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQ 1042 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHH
Confidence 111111 1111 12356666666555431 0 0122334444433 456688888887
Q ss_pred HHHHHhh---cCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 330 IGNMLIE---SDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 330 ~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
..-.+.. .-| ....|..|+-+-+....+...-+.|
T Consensus 1043 Tal~L~DYEd~lp-P~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1043 TALILSDYEDFLP-PAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHhhhccHhhcCC-HHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 7666655 223 2356666655544444444444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=63.17 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHc
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRA 289 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 289 (511)
....+...|++++|+.+|++.++... -+...|..+..++...|++++|+..++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 34566788999999999999998643 2567788888899999999999999999987 344 577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 010405 290 GLLEEAENFIASM-PMKPDNVIWGTLLGA 317 (511)
Q Consensus 290 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 317 (511)
|++++|...|++. ...|+.......+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999887 556665544444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.082 Score=49.72 Aligned_cols=280 Identities=15% Similarity=0.153 Sum_probs=181.1
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHhhCC---CCChhHHHHHHH--HHHHCCChhHHHHHHHHHHHCCCCCCHhHHH----
Q 010405 75 SWNSILGGLV--RFGSVDDACRVFNQMP---KRSLVSWVVLIS--GFAQNGRPKEALALFREMQSLDLEPNSAILV---- 143 (511)
Q Consensus 75 ~~~~li~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~---- 143 (511)
-|.+|-.++. -.|+-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.. |+.|-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 4555555543 3577788887766543 234444434443 33456999999999999975 333332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCee--ehHHHHHHHH
Q 010405 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----KDVS--AYTSAIFGLA 216 (511)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~ 216 (511)
.|.-...+.|+.+.|.++-+..-..- +.-...+.+.++..+..|+++.|+++.+.-.. +++. .--.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334457788888888887776653 22356778888999999999999999986443 4442 2223333322
Q ss_pred H---cCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH
Q 010405 217 M---NGHSIEAFELFENMKSKGISPDSIS-YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 217 ~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (511)
. ..+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+ -.|.+..+. +..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~--lY~~ar~gdt 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIAL--LYVRARSGDT 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHH--HHHHhcCCCc
Confidence 2 3355566666555544 5666432 23345678899999999999999977 344444432 2234455543
Q ss_pred HH--HHH--HHHhCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHH
Q 010405 293 EE--AEN--FIASMPMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET-LKGENAEEVRK 366 (511)
Q Consensus 293 ~~--A~~--~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 366 (511)
.. ..+ -++. .+| +..+--++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.++...+.
T Consensus 311 a~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 ALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHH
Confidence 21 111 1233 344 45566677788889999999999999999999964 7888888887555 99999888887
Q ss_pred HHHh
Q 010405 367 TMRK 370 (511)
Q Consensus 367 ~m~~ 370 (511)
+..+
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 6654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=56.73 Aligned_cols=94 Identities=14% Similarity=-0.099 Sum_probs=73.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++..+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988876 23332 347888888899999999999999999999998888888888
Q ss_pred HHHH-------HcCCchHHHHHHHHH
Q 010405 350 NIYV-------ETLKGENAEEVRKTM 368 (511)
Q Consensus 350 ~~~~-------~~g~~~~A~~~~~~m 368 (511)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778888766666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=50.02 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=66.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHH
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVSLLSACAQLGALDYGNWVYSYIQKKCIK--LDSILCAALIDMY 184 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y 184 (511)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677778888888888888888776554 345666777788888888888888877765211 0222223334455
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 215 (511)
...|+.++|.+.+-....++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777666544433333344333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0034 Score=53.95 Aligned_cols=130 Identities=18% Similarity=0.116 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 180 (511)
....+..+...+...|++++|+..|++..+....+. ...+..+..++...|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677778888888888888888888876533322 3567778888888888888888888888763 3356666777
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 181 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
..+|...|+...+..-++.. ...+++|++.+++.... .|+. +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 77777777655544332221 11245677777766553 3332 444444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0043 Score=62.82 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+...+.++.-.....|++++|...++++.+++| +...|..++.+|...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555554445556777777777777777776 35667777777777777777777776665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0034 Score=51.70 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
......+...+.+.|++++|..+|+-+...+ +-+..-|..|..++-..|++++|+..|..+.... +.|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344445555556666666666666555432 2244445555555556666666666666665554 2345555555566
Q ss_pred HHhcCCHHHHHHHHHh
Q 010405 184 YAKCGSIDLAMQVFHS 199 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~ 199 (511)
|.+.|+.+.|++.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 6666666666665554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0041 Score=58.50 Aligned_cols=152 Identities=13% Similarity=0.005 Sum_probs=107.1
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHchhhcCCCCCHhHH------------
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS--ACSHLGWVEKGFYYFHSMFDVHGIKPELDHY------------ 279 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------------ 279 (511)
++...|+.++|...--..++.... + .+..+++ ++-..++.+.|...|++... ..|+-..-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 456678888888776666553211 1 2222222 34456778888888887765 34442211
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 280 -ACMVDLLGRAGLLEEAENFIASM-PMKP-----DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 280 -~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
..=..-..+.|++.+|.+.+.+. .+.| ++..|.....+..+.|+..+|+.-.+++.+++|.-...|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11123456789999999999876 4444 4555666667788999999999999999999998888888889999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010405 353 VETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~ 371 (511)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999877653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=54.45 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCc
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 358 (511)
....-+...|++++|..+|+-+ -..| +..-|..|..++...++++.|+..|..+..+.++||.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444566789999999999887 2233 5667788888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 010405 359 ENAEEVRKTMRK 370 (511)
Q Consensus 359 ~~A~~~~~~m~~ 370 (511)
+.|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00021 Score=50.58 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=44.0
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...|++++|++.++++....|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578889999999999999998888888999999999999999988877665
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0054 Score=52.49 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEP--NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 181 (511)
...|..+...+...|++++|+..|++.......| ...++..+..++...|+.++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3567777777888888888888888876653222 23467777888888888888888888887653 33345566666
Q ss_pred HHHH-------hcCCHHHHHHHH
Q 010405 182 DMYA-------KCGSIDLAMQVF 197 (511)
Q Consensus 182 ~~y~-------~~g~~~~A~~~~ 197 (511)
..|. +.|+++.|...+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH
Confidence 6666 555555544433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0031 Score=57.23 Aligned_cols=102 Identities=10% Similarity=-0.057 Sum_probs=85.3
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH---hcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 273 KPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACR---VHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
+-|...|-.|...|.+.|+++.|..-|... .+.| ++..+..+..++. ......++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456899999999999999999999999887 3443 5556666666642 3335678999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 348 LSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
|+..+...|++.+|...|+.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0034 Score=48.01 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCccHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDL-EPNSAILVSLLSACAQLG--------ALDYGNWVYSYIQKKCIKLDSIL 176 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 176 (511)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-+...+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999877643 24456778999999999999999
Q ss_pred HHHHHHHHHh
Q 010405 177 CAALIDMYAK 186 (511)
Q Consensus 177 ~~~li~~y~~ 186 (511)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=54.60 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
|......|...|++++|.+.|.+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 344556666677777777766655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00061 Score=61.40 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=81.7
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchh
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 325 (511)
-..+.+++.+|+..|...++ +.| |+.-|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 36678999999999999987 555 4666777889999999999999888776 66675 458999999999999999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHH
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
+|++.|+++++++|++......|-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999999999874444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0054 Score=57.21 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=93.8
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA-CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 285 (511)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 46666666677777778888888877542 2233344433333 33457777799999999884 45567788888899
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 286 LGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 286 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+.+.|+.+.|..+|++. ..-|.. ..|...+.--...|+.+...++.+++.+..|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999886 222333 489999999899999999999999999987764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.004 Score=58.11 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA-CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56667777777777777777777776432 2233344433333 23345666677777777765 455667777777777
Q ss_pred HhcCCHHHHHHHHHhcCCC--C----eeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 185 AKCGSIDLAMQVFHSYGDK--D----VSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
.+.|+.+.|+.+|++.... . ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776542 1 12455555555556666666666555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0022 Score=57.91 Aligned_cols=99 Identities=22% Similarity=0.207 Sum_probs=81.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCC
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGL 291 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 291 (511)
.-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|..+.|++-.+.... +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 44677899999999999999853 22567777788899999999999998888876 5565 7889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 010405 292 LEEAENFIASM-PMKPDNVIWGTLL 315 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p~~~~~~~ll 315 (511)
+++|.+.|++. .+.|+-.+|..=+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999887 7888777665433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00055 Score=50.85 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=39.5
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHH
Q 010405 218 NGHSIEAFELFENMKSKGIS-PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEA 295 (511)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 295 (511)
.|+++.|+.+++++...... |+...+..+..++.+.|++++|..+++. .+ ..| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666554221 1233333355566666666666666655 21 112 122333345556666666666
Q ss_pred HHHHHh
Q 010405 296 ENFIAS 301 (511)
Q Consensus 296 ~~~~~~ 301 (511)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00084 Score=46.96 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=47.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 282 MVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888899999888887 4556 455777777888899999999999999998888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=61.23 Aligned_cols=128 Identities=9% Similarity=-0.039 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHch---hhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCC-CCHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMF---DVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-------PMK-PDNV 309 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~~ 309 (511)
.|..|...|.-.|+++.|+..++.-. +++|-.. ....+..|...+.-.|+++.|.+.++.. +.+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666666788888887665432 2234332 2456777788888888888888877654 211 2445
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhc------CCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIES------DQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+..+|..+|....++++|+..+.+-+.+ ......++.+|+++|...|..++|....+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667788888888888888877765542 12235678889999999998888887765443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.038 Score=46.38 Aligned_cols=133 Identities=8% Similarity=0.004 Sum_probs=103.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHH
Q 010405 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP---DNVIW 311 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 311 (511)
..|+...-..|..+....|+..+|...|.+... --+..|......+.++....+++.+|...++.. ...| ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777777788899999999999999999886 234556788888889999999999999999886 2112 22233
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
-.+...+...|.+..|+..|+.+..-.|+ +..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34567789999999999999999998774 45666677888999998888776655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.019 Score=53.75 Aligned_cols=170 Identities=13% Similarity=0.088 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc
Q 010405 144 SLLSACAQLGALDYGNWVYSYIQKK----CIKLD-SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218 (511)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 218 (511)
.....|-..+++++|...|....+. +-+.+ ...|.....+|.+. ++++|...+++ .+..|...
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~-----------A~~~y~~~ 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK-----------AIEIYREA 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH-----------HHHHHHHC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH-----------HHHHHHhc
Confidence 3344566677777777777665432 11111 12233333334333 56666555443 34556666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-GWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 293 (511)
|++..|-..+.+ +...|... |++++|.+.|.+..+.+..... ...+..+...+.+.|+++
T Consensus 108 G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 666665555443 44566676 8899999988888763322222 345667788899999999
Q ss_pred HHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 294 EAENFIASMP---MK-----PDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 294 ~A~~~~~~~~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
+|.++|++.. .. .+.. .+-..+-.+...||+..|.+.+++.....|.
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999998761 11 1121 1222233466778999999999999987774
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.011 Score=59.87 Aligned_cols=139 Identities=11% Similarity=-0.004 Sum_probs=101.1
Q ss_pred CCeeehHHHHHHHHHc--C---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHchh
Q 010405 203 KDVSAYTSAIFGLAMN--G---HSIEAFELFENMKSKGISPD-SISYIAVLSACSHL--------GWVEKGFYYFHSMFD 268 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 268 (511)
.|..+|...+.+.... + ....|..+|++..+. .|+ ...+..+..++... +++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4677898888885542 2 367999999999885 565 44555544444221 123344444444333
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 269 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
....+.++..|.++.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123445677888877777889999999999988 67788888999999999999999999999999999998874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00087 Score=48.16 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=49.8
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..+...++++.|.+++++++..+|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999998887644
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.2 Score=48.23 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=75.5
Q ss_pred HHHHHHHHHHchhhcCCCC-CHhHHHHHH----HHHHHc---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH--H
Q 010405 256 VEKGFYYFHSMFDVHGIKP-ELDHYACMV----DLLGRA---G---LLEEAENFIASMPMKP----DNVIWGTLLGA--C 318 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ll~~--~ 318 (511)
-+.|..+++.+.+ +.| |...-|.+. ..|..+ . ++-+-+.++++.++.| +...-|.|..| +
T Consensus 396 dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 396 DEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred cHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 5677777777766 333 222222221 122221 1 1223344555555554 44566777777 6
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
..+|++.++.-.-..+.+..| ++.+|..++-......++++|..++..+.
T Consensus 473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 789999999999999999999 78999999999999999999999997664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0034 Score=48.01 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=59.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHchhhcCCCCCHhHHH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSKGI-SPDSISYIAVLSACSHLG--------WVEKGFYYFHSMFDVHGIKPELDHYA 280 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~~ 280 (511)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|.. .+++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHHH
Confidence 345556666888888899999999998 889999999988776542 24456777888876 67888888888
Q ss_pred HHHHHHHH
Q 010405 281 CMVDLLGR 288 (511)
Q Consensus 281 ~li~~~~~ 288 (511)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.21 Score=47.34 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 320 (511)
.+.+..+.-|...|....|.++-... .+ |+..-|-..+.+|+..++|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 45555666777788888887765544 34 7888899999999999999998887654 3356778899999999
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888771 2245678889999999998765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=54.95 Aligned_cols=96 Identities=19% Similarity=0.299 Sum_probs=73.0
Q ss_pred HHHHhc--CCCCeeehHHHHHHHHH-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------------
Q 010405 195 QVFHSY--GDKDVSAYTSAIFGLAM-----NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-------------- 253 (511)
Q Consensus 195 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------- 253 (511)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666666666654 467777788888999999999999999999887542
Q ss_pred --CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 254 --GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 254 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
.+.+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234678899999987 8999999999999999887764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.054 Score=48.10 Aligned_cols=193 Identities=11% Similarity=0.043 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHc---cCCCCCh---------------------------------hHHHHHHHHHHh
Q 010405 42 VVSWNSMINGYVRNGEILEGLKLFD---KMPQRND---------------------------------VSWNSILGGLVR 85 (511)
Q Consensus 42 ~~~~~~li~~~~~~g~~~~A~~~~~---~m~~~~~---------------------------------~~~~~li~~~~~ 85 (511)
...|+.-+.++++....++|..-++ ....||. .-+++|++.|.-
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3457777888888888887765444 3333321 123444444444
Q ss_pred cCCHHHHHHHHhhCCCC--Ch--------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 010405 86 FGSVDDACRVFNQMPKR--SL--------VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 155 (511)
..-+.+-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+.++.+..+...+.++.....|++.-.+.|+.
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 43344444444332221 11 123455555556667777777777777665555666667777777777777
Q ss_pred HHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHH
Q 010405 156 DYGNWVYSYIQKKC-----IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFEL 227 (511)
Q Consensus 156 ~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 227 (511)
+.|...|+...+.. +.....+.......|.-.+++..|...|.++.. .|++.-|.-.-+..-.|+..+|++.
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 77777777665532 222233333334445556666677777766654 3444555544455556777777777
Q ss_pred HHHHHhC
Q 010405 228 FENMKSK 234 (511)
Q Consensus 228 ~~~m~~~ 234 (511)
.+.|+..
T Consensus 309 ~e~~~~~ 315 (366)
T KOG2796|consen 309 LEAMVQQ 315 (366)
T ss_pred HHHHhcc
Confidence 7777664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0063 Score=59.24 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
....+++......+.+.+..++.+.... ....-..|..++++.|...|..+.+..++..=...|+-||..++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444444444444555555555554433 11112233345555555555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHhcC
Q 010405 184 YAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~ 201 (511)
+.+.|++..|.++...|.
T Consensus 148 fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HhhcccHHHHHHHHHHHH
Confidence 555555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.074 Score=53.14 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=67.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 180 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
-.+++...|+.++|..+. ..+|=.+-++++-+++-. .+..+...+..-+.+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 344555667777765542 233334444444443322 1334444444445556666777
Q ss_pred HHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-HHH----------HHHHHHhcCchhHH
Q 010405 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP-MKPDNVI-WGT----------LLGACRVHRNAEMG 327 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~----------ll~~~~~~g~~~~a 327 (511)
-++|.+|-. ...++++....++|++|..+-++.| ..||+.. |.. --.+|.+.|+-.+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 777777654 2346666777778888887777774 3344321 111 11334555556666
Q ss_pred HHHHHHHhh
Q 010405 328 QRIGNMLIE 336 (511)
Q Consensus 328 ~~~~~~~~~ 336 (511)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.36 Score=49.38 Aligned_cols=318 Identities=14% Similarity=0.105 Sum_probs=171.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCC---hHHHHHHHccCCC--CChhHHHHHHHHHHhcCC
Q 010405 17 LIQFYSVCGRVRDARWVFDESDDLD---VVSWNSMINGYVRNGE---ILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGS 88 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 88 (511)
+++-+...+.+..|+++-..+..|- ...|..-..-+.+..+ -+-+..+=+++.. .+-.+|..+..-.-.+|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 4555666667777777766665443 2233333333333322 1222222223332 344566666666666777
Q ss_pred HHHHHHHHhhCCCC--------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 89 VDDACRVFNQMPKR--------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 89 ~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
.+-|..+++.=+.. +..-+..-+.-..+.|+.+....++..+.+. .+...|... ..+.-.|..
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~a~~ 593 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPLALS 593 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchhhhH
Confidence 77777776653321 1122334444455555555555555544432 111111111 112233444
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCeeehHHHHHHHHHcCC---hHHH------
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-------DKDVSAYTSAIFGLAMNGH---SIEA------ 224 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~---~~~A------ 224 (511)
+|.+..+.. |. ..|-+.|-. ++..++...|..=. +.-..........+++... .++|
T Consensus 594 lY~~~~r~~---~~---~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 594 LYRQFMRHQ---DR---ATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHhh---ch---hhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 444443321 10 112233333 33333333322111 1111122223334444332 1122
Q ss_pred -HHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 225 -FELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 225 -~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+.+.+.+.. .|......|.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+..
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 222333322 2333445566666777888899999988876664 388888888899999999999988888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 303 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
. .+.-|.-+..+|.+.|+.++|.+.+-+..... -...+|.+.|++.+|.++--
T Consensus 742 k---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 742 K---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred C---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 4 25567778899999999999999876643321 57888999999999987653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0062 Score=59.29 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=61.6
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeeh
Q 010405 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAY 208 (511)
Q Consensus 135 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~ 208 (511)
.+.+......+++.+....+++.+..++-..... ....-..+..++|..|.+.|..++++.+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666655555543 1112223334556666666666655555554332 455555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
|.++..+.+.|++..|.++..+|...+.-.+..|+..-+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555555555444444455444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.094 Score=44.13 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=61.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCeeehH
Q 010405 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----KDVSAYT 209 (511)
Q Consensus 135 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~ 209 (511)
+.|+...-..|..+....|+..+|...|++...--+..|....-.+.++....++...|...++.+.+ +...+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35666666666677777777777777777766655555666666666666666666666666665543 1223344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
.+...|...|.+.+|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4455555566666666666655553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.058 Score=49.05 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=44.6
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+..-|.+.|.+..|..-++.+++.-|+. +.+...+..+|.+.|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3345788899999999999999976654 3566688899999999999998877654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.21 Score=45.40 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-hHH---HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS-AIL---VSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
+...+-.....+.+.|++++|.+.|+++...- |+. .+. ..+..++.+.+++++|...+++.++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34444445555666777777777777776642 222 111 344556667777777777777776653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.038 Score=52.77 Aligned_cols=159 Identities=17% Similarity=0.143 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ceee----hHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGDK---DVSA----YTSAIFGLAM---NGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
.|+-.|....+++..+++++.+... +... --...-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888763 2111 1123334555 7888999999988766666778888877776
Q ss_pred HHhc---------cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHH----HHHH---Hh-C---C---CC
Q 010405 249 ACSH---------LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA----ENFI---AS-M---P---MK 305 (511)
Q Consensus 249 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-~---~---~~ 305 (511)
.|-. ....++|+..|.+.-+ +.|+..+--.++..+...|...+. .++- .. . + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 2235667766665533 445544433333334444432111 1111 11 0 1 11
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.|-..+.+++.++.-.|+.++|.+.++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23444556666666666677777776666666553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0012 Score=46.72 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=31.8
Q ss_pred ccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 010405 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGT 313 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 313 (511)
..|++++|.++|+.+.+. .+-+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 345666666666666541 2224555555666666666666666666665 33455444433
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0023 Score=45.34 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-chhHHHHHHHHHhhcCC
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHR-NAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 339 (511)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777778888888888888888776 4445 4557777777788888 68888888888888776
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00055 Score=40.56 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0085 Score=51.83 Aligned_cols=97 Identities=11% Similarity=0.207 Sum_probs=68.2
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-------------
Q 010405 93 CRVFNQM--PKRSLVSWVVLISGFAQN-----GRPKEALALFREMQSLDLEPNSAILVSLLSACAQL------------- 152 (511)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 152 (511)
...|++. ..++-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 345666777777776643 55555666677777777777777887777765321
Q ss_pred ---CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 010405 153 ---GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189 (511)
Q Consensus 153 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 189 (511)
.+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688899999999999999999999988876553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.014 Score=46.34 Aligned_cols=83 Identities=12% Similarity=-0.053 Sum_probs=42.2
Q ss_pred HHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC---CchhHHHHHHHHHHc
Q 010405 284 DLLGRAGLLEEAENFIASM---PMKPD--NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN---HDGRYILLSNIYVET 355 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 355 (511)
.++-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|+.++++.....|+ +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444455555555555543 21111 123333445556666666666666666655554 333444445555666
Q ss_pred CCchHHHHHHH
Q 010405 356 LKGENAEEVRK 366 (511)
Q Consensus 356 g~~~~A~~~~~ 366 (511)
|+.++|.+.+-
T Consensus 89 gr~~eAl~~~l 99 (120)
T PF12688_consen 89 GRPKEALEWLL 99 (120)
T ss_pred CCHHHHHHHHH
Confidence 66666665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0083 Score=55.04 Aligned_cols=93 Identities=11% Similarity=0.020 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLS 349 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 349 (511)
.|...+..+.+.|++++|...|+.+ ...|+. ..+.-+...+...|++++|...|+.+.+..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3555555555567777777766665 222322 244445566777777777777777777765553 34455556
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010405 350 NIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777776654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.45 Score=44.99 Aligned_cols=249 Identities=14% Similarity=0.090 Sum_probs=145.0
Q ss_pred HHHHHHHHHHH--CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCccHH--HHHH
Q 010405 106 SWVVLISGFAQ--NGRPKEALALFREMQSLDLEPNSAILVSLLSACA--QLGALDYGNWVYSYIQKKCIKLDSI--LCAA 179 (511)
Q Consensus 106 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 179 (511)
-|.+|-.++.. .|+-..|.++-.+-.+. +..|......|+.+-. -.|+.+.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555544 46666666665544322 3445556666665543 458888888888888753 2222 2233
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CC-eeehHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHhc-
Q 010405 180 LIDMYAKCGSIDLAMQVFHSYGD--KD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSI--SYIAVLSACSH- 252 (511)
Q Consensus 180 li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 252 (511)
|.-.-.+.|..+-|+++-++.-. |. .-.+.+.+...+..|+++.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33344567888888877776654 22 2356777888888888888888887765432 444432 22223332211
Q ss_pred --cCCHHHHHHHHHHchhhcCCCCCHhH-HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHH-
Q 010405 253 --LGWVEKGFYYFHSMFDVHGIKPELDH-YACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMG- 327 (511)
Q Consensus 253 --~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a- 327 (511)
..+...|...-.+..+ +.|+..- --.-..+|.+.|++.++-.+++.+ ...|.+.+|..... .+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHH
Confidence 2345555555544433 5566332 223456778888888888888887 66677766643332 334432221
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
.+-.+++..+.|++......+..+-...|++..|..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 223334444778887777777777777777765543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.61 Score=44.48 Aligned_cols=150 Identities=14% Similarity=-0.021 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee---------------ehHHHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS---------------AYTSAIF 213 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~ 213 (511)
+...|+.++|.++--.+++.. +.+....-.-..++.-.++.+.|...|++...-|.. .|..-..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 455566666666655555442 111111111112223345666666666665542221 1222233
Q ss_pred HHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHc
Q 010405 214 GLAMNGHSIEAFELFENMKSK---GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRA 289 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 289 (511)
-..++|.+.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...+ +.|. ...|..-..++.-.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHH
Confidence 455677888888888777653 2445556666666667777888888777666654 3332 22333333445556
Q ss_pred CCHHHHHHHHHhC
Q 010405 290 GLLEEAENFIASM 302 (511)
Q Consensus 290 g~~~~A~~~~~~~ 302 (511)
++|++|.+-++..
T Consensus 335 e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 335 EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.32 Score=49.28 Aligned_cols=252 Identities=12% Similarity=0.084 Sum_probs=143.2
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-CCCCCH--hHHH--HH--HHHHHhcCCHHHHHH
Q 010405 88 SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNS--AILV--SL--LSACAQLGALDYGNW 160 (511)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~t~~--~l--l~~~~~~~~~~~a~~ 160 (511)
.+++|.+..+.- |.+..|..+...-.+.-.++-|...|-+...- |++.-. .|.. .+ ...-+--|.+++|++
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 456666665543 44567777777666666667776666554321 221100 0000 00 112233477888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---eeehHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK--D---VSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (511)
++-.+-++. .-+.++.+.|++-...++++.-... | ..+|+.+...++....|++|.+.|..-..
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 877665543 2467778888888888887764432 1 24688888888888888888888765321
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 010405 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 315 (511)
. ...+.++.+..++++-..+-..+ +.+....-.+.+++.+.|.-++|.+.+-+-+. | .+-+
T Consensus 825 ----~---e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-p-----kaAv 885 (1189)
T KOG2041|consen 825 ----T---ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-P-----KAAV 885 (1189)
T ss_pred ----h---HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-c-----HHHH
Confidence 1 12445555555555544443333 33455566677888888888888777665532 2 1234
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCC-----------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNH-----------DGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
..|...+++.+|.++.++..--.... ..-..--+..+-++|+.-+|.+++.+|.++
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 45555566666655554422100000 011122355677777877788887777653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.32 Score=42.94 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLE--PNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
.-.....+.+.|++.+|.+.|+.+...-.. --......++.++.+.|+++.|...++..++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566667777777777766654211 11234445566666667777777776666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0035 Score=39.75 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
.+|..+..++...|++++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999888877653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.14 Score=45.64 Aligned_cols=132 Identities=10% Similarity=0.015 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC----CCCCHhHHHHHHH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG----IKPELDHYACMVD 284 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~ 284 (511)
+.++..+.-.|.+.-.+.++.+.++...+.++.....|.+.-.+.|+.+.|..+|+...+..+ +.-...+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444555656666666666654444555555566666666666666666665544221 1111122222223
Q ss_pred HHHHcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 285 LLGRAGLLEEAENFIASMPMK-P-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.|.-++++.+|...+.+.+.. | |+...|.-.-...-.|+...|++..+.+.+..|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 344445555555555554211 1 2222222222222335555555555555555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0096 Score=57.57 Aligned_cols=62 Identities=6% Similarity=0.009 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666666666666666666666663 445543 24666666666666666666666666665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0084 Score=42.93 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 284 DLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888877 4445 445666677778888889999999988888888765443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.3 Score=45.53 Aligned_cols=301 Identities=13% Similarity=0.066 Sum_probs=176.1
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCC---hhHHHHHHHHHHhcC---CHHHHHHHHhhCCC--CChhHHHHHHHHHHHC
Q 010405 46 NSMINGYVRNGEILEGLKLFDKMPQRN---DVSWNSILGGLVRFG---SVDDACRVFNQMPK--RSLVSWVVLISGFAQN 117 (511)
Q Consensus 46 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 117 (511)
..+|+-+...+.+..|+++-..+..|. ..+|.....-+.+.. +-+-+..+=+++.. ..-++|....+.-.+.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 445667777888889999888887765 566777777776653 23344455555555 3556788888888899
Q ss_pred CChhHHHHHHHHHHHCCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 010405 118 GRPKEALALFREMQSLDLE----PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 193 (511)
|+++.|..+++.=...+-. .+-.-+...+.-+...|+.+...+++-.+.+.- +...+ .....+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTLRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHHHhchhh
Confidence 9999998877542221100 011123334445555666666655555544321 11111 1112233444
Q ss_pred HHHHHhcCC-CCeeehHHHHHHHHHcCChHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHhccCC----------H
Q 010405 194 MQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFE--NMK----SKGISPDSISYIAVLSACSHLGW----------V 256 (511)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~t~~~ll~~~~~~g~----------~ 256 (511)
..+|....+ .|..+ +..+.+.++..+++..|. .-. ..|..|+. .....+|++... .
T Consensus 592 ~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHH
Confidence 555544332 12111 111222232223332221 100 11233333 333444554433 2
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
..-+++.+.+...+|..-.--+.+--+.-+...|+..+|.++-.+..+ ||-..|.--+.++...+++++-+++.+....
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAkskks 743 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSKKS 743 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC
Confidence 223344555555555544444556666777889999999999999875 7999998889999999999988877665432
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 337 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
|.-|.-...+|.++|+.++|.+++-+.
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 467777888999999999999988544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.05 Score=49.98 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM----PMKP-DNVIWGTL 314 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l 314 (511)
..|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555444667889999999988887432211 1346677888899999999999988887 2222 23345555
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
...+...|+.+.|..+++++++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6667789999999999999999999764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.088 Score=48.06 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=49.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHhcCCC---CeeehHHH
Q 010405 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQVFHSYGDK---DVSAYTSA 211 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~---g~~~~A~~~~~~~~~~---~~~~~~~l 211 (511)
|...|..|..+|...|+.+.|...|....+.- ++++..+..+..++... ....++..+|+++... |+.+..-+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 55555555555555555555555555555542 33444444444443322 1234455555555432 33344445
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
...+.+.|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666666666666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.24 Score=49.17 Aligned_cols=153 Identities=10% Similarity=0.093 Sum_probs=105.8
Q ss_pred HhcCChHHHHHHHh--cCC-CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 010405 22 SVCGRVRDARWVFD--ESD-DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98 (511)
Q Consensus 22 ~~~g~~~~A~~~f~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 98 (511)
.-.|+++++.+... ++. .-+..-.+.+++-+-+.|.++.|+++-.. + ..-.+...++|+++.|.++.++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCC
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHh
Confidence 34678888554443 221 12244588889999999999999988432 2 3455667889999999999877
Q ss_pred CCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 010405 99 MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178 (511)
Q Consensus 99 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (511)
.. +...|..|.....++|+++-|.+.|.+... +..|+-.|...|+.+.-.++-+.....| -+|
T Consensus 344 ~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n 406 (443)
T PF04053_consen 344 LD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DIN 406 (443)
T ss_dssp CS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HH
T ss_pred cC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHH
Confidence 65 667999999999999999999999987643 6677778888999988888888887776 234
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 010405 179 ALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~ 199 (511)
....++.-.|+.++..+++.+
T Consensus 407 ~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 407 IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 444555567888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.42 Score=37.91 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=82.2
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 295 (511)
...|..++..++..+...+. +..-++.++.-....-+-+-..+.++.+-+.+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34577777777777766532 34445555544444445555555666555422222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
..-+-.++ .+......-+......|.-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 234445556777888999999999999988655557789999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.009 Score=43.47 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhc----CCC---CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIES----DQN---HDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555566666666666666666552 111 13455666677777777777777666543
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.024 Score=47.09 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
....++..+...|+++.|...++++...+|.+...|..++.+|...|+..+|.++++++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999987753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.41 Score=42.29 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=35.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHH
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHD---GRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 362 (511)
+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 34557888899999999999999888654 34567788888888877443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.84 Score=40.41 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhh----cCCCCchhHHH
Q 010405 280 ACMVDLLGRAGLLEEAENFIASMP-------MKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIE----SDQNHDGRYIL 347 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~ 347 (511)
..+...|.+..++++|-..|.+-+ .-|+. ..+-+.|-.+....++..|++.++.-.+ ..|.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445555666666555444331 11222 1233344445555667777777776544 34555666666
Q ss_pred HHHHHHHcCCchHHHHHH
Q 010405 348 LSNIYVETLKGENAEEVR 365 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~ 365 (511)
|+.+| ..|+.+++..++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 66666 345666665554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.5 Score=42.39 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCChHHHHHHHccCC
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDV---VSWNSMINGYVRNGEILEGLKLFDKMP 69 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 69 (511)
+.|..+|-.||..|...|.+++-++++++|..|-+ .+|..-|++=....++.....+|.+..
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 45788999999999999999999999999987643 578888888777788888888887765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.074 Score=42.61 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHch--------------hhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMF--------------DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--- 302 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 302 (511)
..++..++.++++.|+++....+.+..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555555555555555554331 11223344455555555555555555555544433
Q ss_pred -CCCCCHHHHHHHHHH
Q 010405 303 -PMKPDNVIWGTLLGA 317 (511)
Q Consensus 303 -~~~p~~~~~~~ll~~ 317 (511)
++.-+...|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334445444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.014 Score=42.42 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-------P-MKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555566666666555555443 1 1122 33555566667777777777777776654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.6 Score=47.01 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=77.0
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
+...|-.+.+.++-.++.. .+.++...+..-+-+...+.-|-++|.+|+.. .+++......+++.+|..
T Consensus 726 ~~d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFa 794 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFA 794 (1081)
T ss_pred hhcccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHh
Confidence 3344444444444444332 34556666666667778888999999999732 345667778899999999
Q ss_pred HHHHHhhcCCCCchh----------HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 330 IGNMLIESDQNHDGR----------YILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+.++.-+..|+-... +.-.-.+|.++|+-.+|.++++++....+
T Consensus 795 lAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 795 LAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 999888876653322 33345678899999999999998865444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.3 Score=39.15 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=57.9
Q ss_pred HHhccCCHHHHHHHHHHchhhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCc
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGI--KPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD--NVIWGTLLGACRVHRN 323 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~ 323 (511)
.+...|+.+.+...+..... ... ......+......+...++.++|...+... ...|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 34445555555555554432 110 011222223333344455555555555544 22222 3445555555555556
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.+...+.......|.....+..+...+...+.++++...+....+
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666665554334444444444455556666655555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.8 Score=47.05 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HhccCCHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA----CSHLGWVEKGFYYF 263 (511)
Q Consensus 188 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~g~~~~a~~~~ 263 (511)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+ +...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56666666665554 223444444444566666666654 3444444433333 33344444444444
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCchhHHHHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI--WGTLLGACRVHRNAEMGQRIGNM 333 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 333 (511)
...-+ ..--+.+|..+|+|.+|+.+..++....|... -..|.+-+...++.-+|-++..+
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 43322 11234455556666666666555532223222 13444555555555555544444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.12 Score=41.43 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
|..++.+++-++++.|+++....+++..=.-|+.. -...+. --......|+..+..+++.+|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 34567778888888888888877776553221110 000000 11234578999999999999999
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 288 (511)
.|++..|.++.+...+.++++-+...|..|+.-...
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988888889888875443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=46.85 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC---CchhHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-------PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN---HDGRYIL 347 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 347 (511)
.|+.-++.| +.|++.+|.+-|... ...||..-| |..++...|+++.|..+|..+.+..|+ -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355444433 455566666666554 133455555 666677777777777777777774443 3456666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 010405 348 LSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|+....+.|+.++|..+|++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777776653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.1 Score=43.34 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK-----KCIKLDSIL 176 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 176 (511)
....++..+...|++++|+.+.+.+.... +-|...|..++.++...|+...|.+.|+.+.+ .|++|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666677777777777777777653 44667777777777777777777777766543 466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=48.62 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=69.4
Q ss_pred HHHHHcCCHHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH
Q 010405 284 DLLGRAGLLEEAENFIASM--------PMK---------PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~--------~~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 346 (511)
..|.+.|++..|..-|++. +.. .-..++..|..++.+.+++..|++...++++.+|+|....+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 4566666666666665553 111 12345667777889999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010405 347 LLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.-+.+|...|+++.|+..|+++.+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 999999999999999999999986
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.6 Score=38.42 Aligned_cols=221 Identities=18% Similarity=0.089 Sum_probs=138.4
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 118 GRPKEALALFREMQSLDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444544444443211 12455555666666666666666666665542 223445555566666666677777777
Q ss_pred HHHhcCCC--Ce-eehHHHHH-HHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhh
Q 010405 196 VFHSYGDK--DV-SAYTSAIF-GLAMNGHSIEAFELFENMKSKGI--SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269 (511)
Q Consensus 196 ~~~~~~~~--~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 269 (511)
.+...... +. ........ .+...|+.++|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 77766542 21 22333333 67788888888888888755221 11233444444446677889999998888876
Q ss_pred cCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 270 HGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 270 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
..+. ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2233 3667788888888888999999888776 44454 445555555555677799999999999998875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.48 Score=44.33 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=24.8
Q ss_pred HHHCCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 114 FAQNGRPKEALALFREMQSL--DLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
+.+..+.++|+..+.+-+.. +...-..++..+..+.++.|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34566777777776655432 111122445555566666666555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.54 Score=44.78 Aligned_cols=131 Identities=10% Similarity=-0.003 Sum_probs=85.4
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHH----HhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhh---cCC-CCCH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENM----KSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDV---HGI-KPEL 276 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~ 276 (511)
.+|..|...|.-.|+++.|+..-+.= ++.|-+. ....+..+..++.-.|+++.|.+.|+..... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666666778888887654432 2223221 2345667777888888888888888765320 111 1224
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-------P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.+.-.|...|.-...+++|+.++.+- . ..-....+.+|..++...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566777887777888888777543 1 112556777888888888888888888877766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.13 Score=50.02 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL----DHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+...++.+..+|...|++++|+..|++..+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788888888888888888888888876 45653 34788888888888888888888876
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.28 E-value=3.8 Score=41.33 Aligned_cols=332 Identities=14% Similarity=0.091 Sum_probs=195.8
Q ss_pred hcCChHHHHHHHhcCC---CCChhHHHHHHHHH-HHcCChHHHHHHHccCCC------CChhHHHHHHHHHHhcCCHHHH
Q 010405 23 VCGRVRDARWVFDESD---DLDVVSWNSMINGY-VRNGEILEGLKLFDKMPQ------RNDVSWNSILGGLVRFGSVDDA 92 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A 92 (511)
+-|..+.+.++|++.. +.++..|.....-+ ...|+.+.....|+.... .+...|...|.--..++++...
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 4477788888888654 34666676665443 346777777777777764 3455677777777778888888
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHH---C------CChhHHHHHHHHHHH--------------------CCCCCCH--hH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQ---N------GRPKEALALFREMQS--------------------LDLEPNS--AI 141 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~--------------------~~~~p~~--~t 141 (511)
..+++++.+-....++..-.-|.+ . ...+++.++-..... .+-+.+. ..
T Consensus 171 ~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~ 250 (577)
T KOG1258|consen 171 ANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEE 250 (577)
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHH
Confidence 888888765333333333332222 1 122333222211110 0000000 01
Q ss_pred HHHHHHHHH-------hcCCHHHHHHHHHHHHHcC---C----CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---
Q 010405 142 LVSLLSACA-------QLGALDYGNWVYSYIQKKC---I----KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD--- 204 (511)
Q Consensus 142 ~~~ll~~~~-------~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--- 204 (511)
.+.+...+. ........+..++.-++.- + +++..+|...++.-.+.|+.+.+.-.|++..-|-
T Consensus 251 ~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y 330 (577)
T KOG1258|consen 251 KTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY 330 (577)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh
Confidence 111111111 1111122222222222221 1 2346688888888899999999999999887642
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHH
Q 010405 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMV 283 (511)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 283 (511)
...|-..+.-....|+.+-|-.++....+--++-.+.+-..-..-+-..|+.+.|..+++.+..+ . |+ +..-..-+
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~ 407 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHH
Confidence 23455555555556888888888877665433323332222222355678999999999999873 3 55 34444456
Q ss_pred HHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----HH-HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 284 DLLGRAGLLEEAE---NFIASM-PMKPDNVIWGTLL----GA-CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 284 ~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll----~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
....+.|..+.+. +++... +.+-+..+...+. .- +...++.+.|..++.++.+..|++...|..+++....
T Consensus 408 ~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 408 NWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELI 487 (577)
T ss_pred hHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHh
Confidence 6777889988888 555444 2222222222222 22 4567889999999999999999999999999988777
Q ss_pred cCC
Q 010405 355 TLK 357 (511)
Q Consensus 355 ~g~ 357 (511)
.+.
T Consensus 488 ~~~ 490 (577)
T KOG1258|consen 488 QPS 490 (577)
T ss_pred CCc
Confidence 663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.1 Score=41.01 Aligned_cols=130 Identities=11% Similarity=0.058 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT---LL 315 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll 315 (511)
...++. -.......|+..+|...|+..... .+-+...-..+...|...|+.++|..++..+|.+-...-|.. -+
T Consensus 134 ~e~~~~-~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 134 EEEALA-EAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHH-HhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344443 233456789999999999998872 233456777889999999999999999999975544333433 22
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..+.+..+..+...+-+ -...+|+|...-..|+..|...|+.++|.+.+=.+.+++
T Consensus 211 ~ll~qaa~~~~~~~l~~-~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 211 ELLEQAAATPEIQDLQR-RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHhcCCCHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33334444433333322 234589998999999999999999999999887776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.56 Score=38.11 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 284 DLLGRAGLLEEAENFIASM----PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
....+.|++++|.+.|+.+ |..| ....--.|+.++...+++++|...+++.++++|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3344567777777777766 2222 2234445667777788888888888888887776653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.13 Score=46.34 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=80.2
Q ss_pred HHHHHHhcC--CCCeeehHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----------
Q 010405 193 AMQVFHSYG--DKDVSAYTSAIFGLAMN-----GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG----------- 254 (511)
Q Consensus 193 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 254 (511)
.++.|.... ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 56778888888888754 567777778899999999999999999998876532
Q ss_pred -----CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHH
Q 010405 255 -----WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 255 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 293 (511)
+-+=++.++++|.. +|+.||-++-..|+.++++.+..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457899999987 999999999999999999988643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.2 Score=36.39 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
..++..+...+.......+++.+.+.+ +.+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 445566666666666667666666665 34555666666666654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.58 Score=50.54 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=100.9
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 165 (511)
.+++++|+.-+.++. ...|.-.++--.+.|.+.+|+.++ +|+...+..+..+|+. .+
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HH
Confidence 456666666665554 223444444455667777777664 6788888777766653 22
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH--H
Q 010405 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS--Y 243 (511)
Q Consensus 166 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~ 243 (511)
.+.. .|+--.-+|.++|+.++|++. |...|+|.+|+.+..++... -+... -
T Consensus 950 ~~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 2221 122234568889999998664 45678999999988877532 12222 2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 303 (511)
..|..-+...++.-+|-++..+... . ..-.+..|++...+++|..+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 4566777788888888777776654 2 2334566777888888888776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.27 Score=40.93 Aligned_cols=85 Identities=19% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 193 (511)
+.+.|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|......+. -|+...--....|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 344555555555555444332 11233334444444444555555555544433321 1222222234444445555555
Q ss_pred HHHHHhc
Q 010405 194 MQVFHSY 200 (511)
Q Consensus 194 ~~~~~~~ 200 (511)
+..|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.31 Score=46.42 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--------C----------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPK--------R----------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~--------~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 141 (511)
.+.|.+.|++..|...|++... + -..+++.+..+|.+.+++.+|++.-.+.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 3467888999998888877431 0 12468888899999999999999999888875 668888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH-HHHHHHhcC
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL-AMQVFHSYG 201 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~ 201 (511)
..--..++...|+++.|+..|+++++.. |.|-.+-+-|+.+-.+..+..+ ..++|..|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999863 3344455555555444444333 356666654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.08 E-value=1 Score=45.47 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHchhhcCCCCCHhH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKG-ISPDS-----ISYIAVLSACS----HLGWVEKGFYYFHSMFDVHGIKPELDH 278 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~ 278 (511)
..++....-.|+-+.+++.+.+..+.+ +.-.. .+|..++..+. ...+.+.|.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 344444555666667777666654422 22111 12333333332 245678888898888873 355444
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH-HHHH
Q 010405 279 YA-CMVDLLGRAGLLEEAENFIASMPM-K-----PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI-LLSN 350 (511)
Q Consensus 279 ~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 350 (511)
|. .-.+.+...|++++|.+.|++.-. + .....+--+.-.+....++++|...+.++.+...-+..+|. ..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 445667778999999999987521 1 12334445556677889999999999999997666555655 4455
Q ss_pred HHHHcCCc-------hHHHHHHHHHHh
Q 010405 351 IYVETLKG-------ENAEEVRKTMRK 370 (511)
Q Consensus 351 ~~~~~g~~-------~~A~~~~~~m~~ 370 (511)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56788888 888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.54 Score=45.94 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=70.3
Q ss_pred HHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 256 VEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGR---------AGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
.+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 34566666666532334454 3333333322211 12334555555544 3333 55555555555666677
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.9 Score=43.00 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHH
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDA 92 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 92 (511)
-.+.+++.+-+.|..+.|+++-.. + ..-.....+.|+++.|.++-++.. +...|..|.+...+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 389999999999999999988643 2 233445668999999999987775 677999999999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
++.|.+... |..|+-.|.-.|+.++-.++-+.....| -++....++.-.|+.++..+++..
T Consensus 367 e~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 367 EECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999754 6678888889999888878777776665 255566666777888777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.88 E-value=3.3 Score=38.60 Aligned_cols=99 Identities=8% Similarity=0.009 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHH
Q 010405 141 ILVSLLSACAQLGALD---YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFG 214 (511)
Q Consensus 141 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 214 (511)
++..++.++...+..+ +|..+.+.+.... +-.+.++-.-+..+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4445555665555443 3444444553332 222344444455555567777777777766542 22345544444
Q ss_pred HHH--cCChHHHHHHHHHHHhCCCCCCH
Q 010405 215 LAM--NGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 215 ~~~--~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
+-. ......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 421 12234555555555544444443
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.7 Score=40.51 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHH---CCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPKR-------SLVSWVVLISGFAQ---NGRPKEALALFREMQSLDLEPNSAILVSLLS 147 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 147 (511)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334567777777777777777642 11122233444555 6777777777777555555667777776666
Q ss_pred HH
Q 010405 148 AC 149 (511)
Q Consensus 148 ~~ 149 (511)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.8 Score=35.38 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
.++..+.+.+.+.....+++.+...+ ..+....+.++..+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555444444443 2334444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.32 Score=38.43 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=63.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC-CCC---chhHHHHHHHHHHcCCc
Q 010405 285 LLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD-QNH---DGRYILLSNIYVETLKG 358 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 358 (511)
++...|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++. |.. -..|+.-+..|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888765 2333 56678888888888888888888888888843 321 12456667778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 010405 359 ENAEEVRKTMRKRKI 373 (511)
Q Consensus 359 ~~A~~~~~~m~~~g~ 373 (511)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888877776554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.8 Score=38.51 Aligned_cols=144 Identities=13% Similarity=0.032 Sum_probs=88.9
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCH
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLL 292 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 292 (511)
.....|+..+|..+|......... +...-..+..++...|+.+.|..++..+..+ ..-+ ......-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence 455677788888888877765322 3344455777788888888888888877541 1111 11122334555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchH
Q 010405 293 EEAENFIASMPMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 293 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
.+..++-++....| |...-..+...+...|+.+.|.+.+-.+++ ..-.+...-..|+..+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555554455 555556666778888888888877766666 333455666677777777775444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.3 Score=44.04 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=70.0
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-----------
Q 010405 92 ACRVFNQMP--KRSLVSWVVLISGFAQN-----GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG----------- 153 (511)
Q Consensus 92 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 153 (511)
.++.|.... ++|-.+|-+++..|... +..+=....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 45666676666666543 444555556777888888888888888887654322
Q ss_pred -----CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 154 -----ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 154 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
+-+-++.++++|...|+.||-.+-..|++++.+.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999998877653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=6.5 Score=40.98 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C---ChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHH
Q 010405 18 IQFYSVCGRVRDARWVFDESDD--L---DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD 91 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 91 (511)
++-+.+.+.+++|++.-+.... + -...+...|..+.-.|++++|-...-.|...+..-|.--+.-++..++...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 3445566677777777665442 1 223466677777777777777776666665555555555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.86 Score=42.27 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCCHHHH
Q 010405 187 CGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV----LSACSHLGWVEKG 259 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~a 259 (511)
.|+..+|-..++++.+ .|..+++-.=.++..+|+.+.-...++++... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555443 25555555555566666655555555555432 12232222111 1122345555555
Q ss_pred HHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 260 FYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+.-++..+ +.| |.-.-.++...+...|++.++.++..+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555443 222 2333344555555556666666655544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.3 Score=35.96 Aligned_cols=18 Identities=22% Similarity=0.062 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhhcCCCC
Q 010405 324 AEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~ 341 (511)
...|...|+.+++.-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 557777777777777865
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.20 E-value=6 Score=38.61 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC----C----CChhHHHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD----D----LDVVSWNSMINGYVR 54 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~----~~~~~~~~li~~~~~ 54 (511)
|-+.-+..+..+.+.|++.+++.++++|. + -|+.+||.++-.+.+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 34445667788889999999999988765 2 478888886555444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.6 Score=42.22 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=42.0
Q ss_pred HcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHH
Q 010405 217 MNGHSIEAFELFENMKSKGIS--PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 293 (511)
+.|++.+|...|...++.... -....+-.|..++...|+++.|..+|..+.+.++-.|. ++.+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455666555555543211 01112333555555556666666555555554443333 244445555555555555
Q ss_pred HHHHHHHhC
Q 010405 294 EAENFIASM 302 (511)
Q Consensus 294 ~A~~~~~~~ 302 (511)
+|...+++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.14 E-value=3.7 Score=41.52 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=106.9
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcc-----HHHHHHHHHHHHh----cCCHHHH
Q 010405 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLD-----SILCAALIDMYAK----CGSIDLA 193 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~y~~----~g~~~~A 193 (511)
.-+|.-+.+. +|| .+..+++...-.|+-+.+.+.+.+..+.+ +... .-.|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555553 444 35566777777788888888887776643 2111 1122333333332 4567888
Q ss_pred HHHHHhcCC--CCeeehHHH-HHHHHHcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 194 MQVFHSYGD--KDVSAYTSA-IFGLAMNGHSIEAFELFENMKSKG---ISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 194 ~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
.++++.+.+ |+..-|.-. ...+...|+.++|++.|++..... .+.....+--+.-.+....++++|.+.|..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 888888876 666655544 334566888999999988765321 11223444455666777889999999999988
Q ss_pred hhcCCCCCHhHHHHH-HHHHHHcCCH-------HHHHHHHHhC
Q 010405 268 DVHGIKPELDHYACM-VDLLGRAGLL-------EEAENFIASM 302 (511)
Q Consensus 268 ~~~~~~p~~~~~~~l-i~~~~~~g~~-------~~A~~~~~~~ 302 (511)
+..... ...|..+ .-.+...|+. ++|.++|.+.
T Consensus 333 ~~s~WS--ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KESKWS--KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccccH--HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 744443 3333333 2345566766 8888888877
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.11 E-value=16 Score=43.28 Aligned_cols=309 Identities=14% Similarity=0.085 Sum_probs=176.8
Q ss_pred HHHHHHHHcCChHHHHHHHccC----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhHHHHHHHHHHHCCC
Q 010405 47 SMINGYVRNGEILEGLKLFDKM----PQR--NDVSWNSILGGLVRFGSVDDACRVFNQ-MPKRSLVSWVVLISGFAQNGR 119 (511)
Q Consensus 47 ~li~~~~~~g~~~~A~~~~~~m----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 119 (511)
++..+=.+.+.+.+|+..+++- .+. ....|..+...|+..+++|...-+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4444555778888999888883 221 233444555589888888887777663 333433 245566778899
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA-LIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~y~~~g~~~~A~~~~~ 198 (511)
+..|...|+.+.+.+ ++...+++.++..-...+.++...-..+-.... ..+....+++ =+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 334778888888777778777766644444333 2333333333 3455577888887777666
Q ss_pred hcCCCCeeehHHH-H-HHHHHcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH----------H
Q 010405 199 SYGDKDVSAYTSA-I-FGLAMNGH--SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF----------H 264 (511)
Q Consensus 199 ~~~~~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~----------~ 264 (511)
..+..+|.+. + ..+.+... .-.-.+..+.+++.-+.| +.+|+..|.+..+.++. .
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6677777765 2 22222221 111123333333321111 11222222111111111 1
Q ss_pred HchhhcCCCCCHh------HHHHH---HHHHHHcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCchhHHHH
Q 010405 265 SMFDVHGIKPELD------HYACM---VDLLGRAGLLEEAEN-FIASMPMKP-----DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 265 ~~~~~~~~~p~~~------~~~~l---i~~~~~~g~~~~A~~-~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
......++.++.. -|..- .+.+.+...+=-|.+ .+.....+| -..+|-.....++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111112223211 11111 122222111111111 011111122 24578888888999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
..-.+.+..+ +..+.-.+......|+...|..+++.-.+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9888888665 47888999999999999999999998876554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.59 Score=43.31 Aligned_cols=158 Identities=11% Similarity=0.019 Sum_probs=116.1
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh----HHHHHHHHHHHcCC
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD----HYACMVDLLGRAGL 291 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~ 291 (511)
.-.|+..+|-..++++++. .+.|...+...=.+|...|+.+.-...++++.. ...|+.. +-..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3478888888899998876 455777888888899999999999888888875 3345543 33445556678999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC----chhHHHHHHHHHHcCCchHHHHHH
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH----DGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
+++|++.-++. .+.| |...-.++...+...|+..++.++..+-....... .-.|-..+-.|...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 5554 56667777788889999999999887766533221 234556666778889999999999
Q ss_pred HHHHhCCCccC
Q 010405 366 KTMRKRKIKRA 376 (511)
Q Consensus 366 ~~m~~~g~~~~ 376 (511)
++=.-+.+.++
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 86543333333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.3 Score=43.49 Aligned_cols=150 Identities=9% Similarity=-0.042 Sum_probs=78.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
+.--.+..+.+.-+++-++.++ +.||-.+.-.++ +--....+.++.++|++..+ .| ...+..-- .....|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk-Ag----E~~lg~s~-~~~~~g~ 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK-AG----EASLGKSQ-FLQHHGH 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH-HH----HHhhchhh-hhhcccc
Confidence 3334455566666666666665 345543332222 33345567788888887765 11 00000000 0000111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN--HDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
. .+.+..-..+|-..+=..|..++.+.|+.++|.+.++++.+..|. +..+...|+..+...+.+.++..++.+-.
T Consensus 246 ~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 F---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred h---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0 111111111122333344666677778888888888888775554 34466678888888888888888877765
Q ss_pred hCCC
Q 010405 370 KRKI 373 (511)
Q Consensus 370 ~~g~ 373 (511)
+-..
T Consensus 323 Di~l 326 (539)
T PF04184_consen 323 DISL 326 (539)
T ss_pred cccC
Confidence 4433
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.86 E-value=7.4 Score=38.57 Aligned_cols=98 Identities=10% Similarity=0.144 Sum_probs=57.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHHh
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP-M-KPDN--VIWGTLLGACRV 320 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~~~~~ 320 (511)
.+..++.+.|+.++|++.+.+|.++............|+..|...+.+.++..++.+.. + -|.. ..|++.+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34555566777777777777776633222234456677777777778887777777663 1 1333 244443333332
Q ss_pred cCc---------------hhHHHHHHHHHhhcCCCCc
Q 010405 321 HRN---------------AEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 321 ~g~---------------~~~a~~~~~~~~~~~p~~~ 342 (511)
.++ -..|.+.+.++.+.+|..+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 222 1235677888888887543
|
The molecular function of this protein is uncertain. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=6 Score=36.85 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=11.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
.+.++...|+. +|...+..+.+..|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444442 34444444444334
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.14 Score=30.02 Aligned_cols=32 Identities=16% Similarity=-0.026 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.54 E-value=3.7 Score=38.49 Aligned_cols=134 Identities=13% Similarity=0.219 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCHH
Q 010405 121 KEALALFREMQSLDLEPNSAILVSLLSACAQ--LG----ALDYGNWVYSYIQKKCI---KLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 121 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~ 191 (511)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++... .++..++.+|+.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455678888888888877777664444333 11 24556677777776532 1223333333221 222222
Q ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHch
Q 010405 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYIAVLSACSHLGW--VEKGFYYFHSMF 267 (511)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~--~~~a~~~~~~~~ 267 (511)
.- .+.+...|+.+.+.|+..+. .....+|..+..... ...+..+++.+.
T Consensus 157 ~l---------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 157 EL---------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 11 23566777777776765542 233333333322222 346777888887
Q ss_pred hhcCCCCCHhHHHHHHH
Q 010405 268 DVHGIKPELDHYACMVD 284 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~ 284 (511)
+ .|+++...+|..+.-
T Consensus 210 ~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 210 K-NGVKIKYMHYPTLGL 225 (297)
T ss_pred H-cCCccccccccHHHH
Confidence 7 688887777765543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=3.7 Score=40.35 Aligned_cols=158 Identities=11% Similarity=0.035 Sum_probs=103.9
Q ss_pred eeh--HHHHHHHHHcC-----ChHHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHch
Q 010405 206 SAY--TSAIFGLAMNG-----HSIEAFELFENMKS-KGISPDS-ISYIAVLSACSH---------LGWVEKGFYYFHSMF 267 (511)
Q Consensus 206 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~ 267 (511)
..| ...+.+..... ..+.|+.+|.+... +.+.|+- ..|..+..++.. ..+..+|.++-....
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655421 34678889999873 2356653 334333322211 234556777777776
Q ss_pred hhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
+ --+-|+.....+..++.-.|+++.|..+|++. ...||.. .|....-.+.-.|+.++|.+.+++.+++.|.....-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 6 12345777778888888888999999999998 5667644 565555667778999999999999999999754332
Q ss_pred H--HHHHHHHHcCCchHHHHHHH
Q 010405 346 I--LLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 346 ~--~l~~~~~~~g~~~~A~~~~~ 366 (511)
. ..++.|... ..++|.+++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 2 334456655 4677777663
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.42 E-value=7.8 Score=37.36 Aligned_cols=35 Identities=3% Similarity=-0.089 Sum_probs=27.1
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
.+..+.+...|+.+.+..|.....|..++..+.+.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 37788889999999999888777777777665443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.22 Score=28.96 Aligned_cols=32 Identities=25% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666677777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.8 Score=35.76 Aligned_cols=160 Identities=12% Similarity=0.074 Sum_probs=81.3
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 285 (511)
..||-+.--+...|+++.|.+.|+...+.+..- ..++..-.-++.-.|++..|.+-|...-+...-.|-...|.-+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 456666666666777777777777666543221 12222222233345666666665554443222222222232222
Q ss_pred HHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC-------chhHHHHHHHHHHcCC
Q 010405 286 LGRAGLLEEAENFI-ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH-------DGRYILLSNIYVETLK 357 (511)
Q Consensus 286 ~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 357 (511)
.+.-++.+|..-+ ++.. ..|..-|...|-.+.- |... .+.+++++.....++ ..+|.-|+.-|...|+
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1233455554433 3331 2344455544433221 1111 122333443322222 3688899999999999
Q ss_pred chHHHHHHHHHHhCC
Q 010405 358 GENAEEVRKTMRKRK 372 (511)
Q Consensus 358 ~~~A~~~~~~m~~~g 372 (511)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998776543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.30 E-value=8.6 Score=37.49 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-IKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIW-GTLLGA 317 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~ 317 (511)
..|...+.+..+..-++.|+.+|-++.+ .+ +.+++..+++++.-++ .|+..-|..+|+-- ..-||...| .-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4456666666677778888888888877 45 5677788888887554 56777788888753 333555544 344555
Q ss_pred HHhcCchhHHHHHHHHHhhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQN--HDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...++-+.|..+|+..++.-.+ -...|-.++.--..-|+...|..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66777778888888866552111 135677777777777888777777666654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.94 E-value=8.7 Score=37.05 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC----CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ----NHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
...+|..+...+++.|.++.|...+.++....+ ..+.....-+......|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456888899999999999999999999988542 24567777788999999999999999888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=5.4 Score=35.55 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--hHHHHHHHHHHHCC
Q 010405 44 SWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL--VSWVVLISGFAQNG 118 (511)
Q Consensus 44 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g 118 (511)
.|.-...+|....++++|...+.+..+ .|...|.+ ...++.|.-+.+++.+-+. ..|+--...|..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 355555666667777777766655542 22222221 1223333334444433221 23445566677777
Q ss_pred ChhHHHHHHHHH
Q 010405 119 RPKEALALFREM 130 (511)
Q Consensus 119 ~~~~A~~~~~~m 130 (511)
.++-|-..+++.
T Consensus 106 spdtAAmaleKA 117 (308)
T KOG1585|consen 106 SPDTAAMALEKA 117 (308)
T ss_pred CcchHHHHHHHH
Confidence 776666555544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=14 Score=38.88 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=53.0
Q ss_pred ChHHHHHHHccCCC-CCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 010405 57 EILEGLKLFDKMPQ-RND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134 (511)
Q Consensus 57 ~~~~A~~~~~~m~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 134 (511)
.+++...++++-.. |-. ..-..-+..+.+.++++.....+..- ..+...-.....+....|+.++|.+..+.+-..|
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 34555555555443 211 22233344555677777777733232 2344444556667777788777776666665544
Q ss_pred CCCCHhHHHHHHHHHHhcCCH
Q 010405 135 LEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 135 ~~p~~~t~~~ll~~~~~~~~~ 155 (511)
...+.....++..+...|.+
T Consensus 160 -~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 160 -KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred -CCCChHHHHHHHHHHHcCCC
Confidence 33445566666666655543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.7 Score=33.41 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
++..|+.+.|++.|.+.+.. .+-+...|+.-..++.-.|+.++|.+-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 33444555555555544432 112344455555555555555555555554444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.62 E-value=3.5 Score=38.86 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CccHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSL-DLEP---NSAILVSLLSACAQLGALDYGNWVYSYIQKKCI-----KLDSI 175 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 175 (511)
.+|-.+..++-+-.++.+++.+-..-... |..| -.....++..++...+.++++.+.|+.+.+... -....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 35556666666666666666654433221 2222 112334456666777777777777777655321 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCeee-hH-----HHHHHHHHcCChHHHHHHHHHHH----hCCCCC
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSY-------GDKDVSA-YT-----SAIFGLAMNGHSIEAFELFENMK----SKGISP 238 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~-------~~~~~~~-~~-----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p 238 (511)
++..|.+.|.+..++++|.-+..+. .-.|... |. .|.-++-..|....|.+.-++.. ..|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7777788888888877765443322 1122221 11 23334555566555555554432 233222
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 239 D-SISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 239 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
. ......+.+.|...|+.|.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2234455556667777777766665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=9 Score=35.71 Aligned_cols=239 Identities=13% Similarity=0.054 Sum_probs=151.8
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCC----HHHHHHHHhhC--CCCChh
Q 010405 32 WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS----VDDACRVFNQM--PKRSLV 105 (511)
Q Consensus 32 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~--~~~~~~ 105 (511)
.+++.+..+|.......+.++...|..+-...+..-...+|...-...+.++++.|+ .+++...+..+ ..++..
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~ 106 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSAC 106 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHH
Confidence 344445677888888888888888875544444444456788888888888888886 35677777765 456665
Q ss_pred HHHHHHHHHHHCCCh-----hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 010405 106 SWVVLISGFAQNGRP-----KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180 (511)
Q Consensus 106 ~~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 180 (511)
.-...+.++...+.. .++.+.+..... .++...-...+.++.+.++ +.+...+-.+.+. ++..+-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 555555555554321 234444444433 3466666777888888776 4566666666553 345566666
Q ss_pred HHHHHhcC-CHHHHHHHH-HhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 181 IDMYAKCG-SIDLAMQVF-HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 181 i~~y~~~g-~~~~A~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
+.++.+.+ +...+...+ ..+.++|...-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 66666543 133444444 44556777778888888888887 46777777776643 2 234677888888885 6
Q ss_pred HHHHHHHchhhcCCCCCHhHHHHHHHHHH
Q 010405 259 GFYYFHSMFDVHGIKPELDHYACMVDLLG 287 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 287 (511)
|...+..+.+ -.||..+-...+.++.
T Consensus 253 a~p~L~~l~~---~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLY---KFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHh---hCCChhHHHHHHHHHh
Confidence 8888888775 2356666555555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=3.3 Score=34.76 Aligned_cols=119 Identities=22% Similarity=0.151 Sum_probs=65.6
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHH-----HHHHHHCCChhHHHHHHHHHHHCCCCCCHh-HHHHHH--HHHHhcCCH
Q 010405 84 VRFGSVDDACRVFNQMPKRSLVSWVVL-----ISGFAQNGRPKEALALFREMQSLDLEPNSA-ILVSLL--SACAQLGAL 155 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll--~~~~~~~~~ 155 (511)
++.+..++|+.-|..+.+.+--.|-.| .....+.|+...|...|.+.-.....|-.. -..-|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 455667777777777665443333332 334556677777777777765543333222 111111 123455666
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010405 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202 (511)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 202 (511)
+....-.+-+-..+-+.....-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66655555555444444455556666666667777777777666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.85 Score=41.89 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777778888888888888888888888888888888888888888888887765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.58 Score=29.39 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL 133 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 133 (511)
+|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.72 E-value=3 Score=42.02 Aligned_cols=149 Identities=17% Similarity=0.082 Sum_probs=100.2
Q ss_pred cCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 010405 24 CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103 (511)
Q Consensus 24 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 103 (511)
.|+++.|..++..++++ .-+.++.-+.+.|-.++|+++- +|+. .-.....+.|+++.|.++..+. .+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-----~D~d---~rFelal~lgrl~iA~~la~e~--~s 665 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-----TDPD---QRFELALKLGRLDIAFDLAVEA--NS 665 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-----CChh---hhhhhhhhcCcHHHHHHHHHhh--cc
Confidence 46777777766666533 3455666677778778777652 2221 1223445788888888876553 45
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |.-.-+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~ 730 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLA 730 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHH
Confidence 67799999999999999999998877643 556777777788877666666666666532 223345
Q ss_pred HHhcCCHHHHHHHHHhc
Q 010405 184 YAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~ 200 (511)
|...|+++++.+++.+-
T Consensus 731 ~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIST 747 (794)
T ss_pred HHHcCCHHHHHHHHHhc
Confidence 66778888888777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.37 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.066 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 344 RYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999988743
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.47 Score=28.28 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666677777777777766664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.49 E-value=6.2 Score=31.58 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=26.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.+..+...|+-++-.+++.++.. +-+|++.....+..||.+.|+..++.+++.++-+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34445555555555555555443 1244455555555566666666665555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.4 Score=40.51 Aligned_cols=70 Identities=16% Similarity=0.380 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHH-----CCCCCCHhHHHHH
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQS-----LDLEPNSAILVSL 145 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~l 145 (511)
+..++..+..+|+.+.+...++++... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 445555666666666666666666542 445666667777777777666666666644 3555554444333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.12 E-value=8.5 Score=32.48 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
.+..+++.+...|++-+|.++.+..+.. +......++.+....+|...--.+++-.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~-~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV-DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555667777777777777777664211 1222234455555555444443343333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.01 E-value=3.7 Score=30.92 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=42.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
++.+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|..+| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456678888888888888888888888776554 6677777777777777666 4444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1 Score=38.65 Aligned_cols=89 Identities=19% Similarity=0.094 Sum_probs=68.3
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 284 DLLGRAGLLEEAENFIASM-PMKPD------NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
.-+.+.|++++|..-|... ..-|. .+.|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456678888888777665 21221 2344444466788899999999999999999988888888888999999
Q ss_pred CchHHHHHHHHHHhCC
Q 010405 357 KGENAEEVRKTMRKRK 372 (511)
Q Consensus 357 ~~~~A~~~~~~m~~~g 372 (511)
++++|++-++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999888744
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.64 E-value=12 Score=33.30 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=35.9
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHhcCchhHHHHHHHHHhhcCCCC
Q 010405 279 YACMVDLLGRA-GLLEEAENFIASM-----PMKPDNVIWGTLLGA---CRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 279 ~~~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+-.+...|-.- .++++|+..|+.. +.+.+...-..++.+ -...+++.+|+++|+++.....++
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444555443 5666666666655 122222233334433 356688999999999988854444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.45 E-value=7.6 Score=32.74 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=66.1
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 010405 37 SDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF--GSVDDACRVFNQMPKRSLVSWVVLISGF 114 (511)
Q Consensus 37 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~ 114 (511)
-..++...|..++..+.+.|++..-.+++.--.-+|.......+-.+... .-..-|.+.+.++. ..+..++..+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~iievL 99 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEIIEVL 99 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHHHHH
Confidence 34456667777777777777776666665544333333222222111111 11334445555543 2344566677
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
...|++-+|+.+.+..... +......++.+..+.++...-..+++...+.
T Consensus 100 L~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 100 LSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888887776654221 2222344566666666666655565555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.41 E-value=13 Score=33.52 Aligned_cols=56 Identities=9% Similarity=-0.030 Sum_probs=44.4
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHD---GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..-|.+.|.+..|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3558889999999999999999765544 3556778889999999999988877654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.30 E-value=9.6 Score=31.76 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=64.2
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAENFIASMP-MKPDNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 326 (511)
.-...++.+.+..++..+.- +.|.. ..-..-...+.+.|++.+|..+|+++. ..|....-.+|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34566788888888888865 45552 333334455678899999999999883 33555556677776655544344
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
=.....++.+..++ +.+ ..|+..+....+...|..
T Consensus 96 Wr~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCC-hHH-HHHHHHHHHhccccchhh
Confidence 44445555555542 222 234444444444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.29 E-value=6.4 Score=33.75 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=9.6
Q ss_pred HcCCHHHHHHHHHhC
Q 010405 288 RAGLLEEAENFIASM 302 (511)
Q Consensus 288 ~~g~~~~A~~~~~~~ 302 (511)
..+++.+|-+.|-..
T Consensus 125 ~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 125 AQRDFKEAAELFLDS 139 (177)
T ss_pred HhchHHHHHHHHHcc
Confidence 356777777766555
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.17 E-value=4.7 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS--AILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
..+..+...|.+.|+.++|++.|.++......|.. ..+..++..+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46778888888888888888888888776444433 4556777778888888888877766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.7 Score=36.15 Aligned_cols=52 Identities=4% Similarity=-0.056 Sum_probs=27.8
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...++.+.++.++..+.-+.|..+..-..-+..+...|+|++|.++++.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555555555555555555555555555555555555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.74 Score=26.72 Aligned_cols=30 Identities=10% Similarity=-0.079 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
+|..+...+...|+.++|...+++..++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555666677777777777777776666
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.7 Score=35.49 Aligned_cols=53 Identities=8% Similarity=-0.027 Sum_probs=39.0
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..++.++++.++..+.-+.|..+..-..-+..+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777777777777777777777766677777777777777777777776544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.76 E-value=30 Score=35.24 Aligned_cols=299 Identities=8% Similarity=0.050 Sum_probs=179.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLV-SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
+-..|+.||.--....+.+.+..+++.+.. |... -|-....-=.+.|..+.+.++|++-++. ++.+...|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 344566666544444555667777777653 4332 4566666667889999999999998764 66666667666655
Q ss_pred HH-hcCCHHHHHHHHHHHHHc-CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHH---c----
Q 010405 149 CA-QLGALDYGNWVYSYIQKK-CIK-LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM---N---- 218 (511)
Q Consensus 149 ~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~---- 218 (511)
+. ..|+.+.....|+.++.. |.. .....|...+..-..++++.....+|+++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 457788888888888774 322 2355777888887888999999999999887555555555444433 2
Q ss_pred --CChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHH-hccCCHHHH------------------------HHHHHHch
Q 010405 219 --GHSIEAFELFENMKSK----GISPDSISYIAVLSAC-SHLGWVEKG------------------------FYYFHSMF 267 (511)
Q Consensus 219 --g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~-~~~g~~~~a------------------------~~~~~~~~ 267 (511)
...+++.++-...... ...+.......-+.-- ...+..+++ +..|+.-.
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2344444444333321 0011111111111110 011111111 11122111
Q ss_pred hh--cCCC----CCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh-cC
Q 010405 268 DV--HGIK----PELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SD 338 (511)
Q Consensus 268 ~~--~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~ 338 (511)
+. +.++ ++..+|..-++--.+.|+.+.+.-+|++. +...-...|--.+.-....|+.+.|..++.+..+ ..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 10 0112 23567777788888889999998888886 3333344555555555555888888888888877 45
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|..+.+...-+...-..|+++.|..+++...+.
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 555555555555666778888888888888754
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.64 E-value=19 Score=32.75 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=135.1
Q ss_pred CCHHHHHHHHhhCCC----C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC---CC--CCCHhHHHHHHHHHHhcCC
Q 010405 87 GSVDDACRVFNQMPK----R---SLVSWVVLISGFAQNGRPKEALALFREMQSL---DL--EPNSAILVSLLSACAQLGA 154 (511)
Q Consensus 87 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~t~~~ll~~~~~~~~ 154 (511)
...++|+.-|++..+ + .-.+.-.+|..+.+.|++++.+..|.+|+.- .+ .-+....++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655432 1 2234456677777777777777777776431 11 1234556667666666666
Q ss_pred HHHHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-------eeehHHHHHH
Q 010405 155 LDYGNWVYSYIQKK-----CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--------KD-------VSAYTSAIFG 214 (511)
Q Consensus 155 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 214 (511)
.+.-...++.-++. +-...-.+-+.|...|...|.+.+..+++.++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 65555555443321 1111222445577778888888777777776642 11 1346666777
Q ss_pred HHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHchhhcCC--CCCH---hHHHHHH
Q 010405 215 LAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACS-----HLGWVEKGFYYFHSMFDVHGI--KPEL---DHYACMV 283 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~li 283 (511)
|....+-.....+|++.+.. .-.|.+... .+++-|. +.|.+++|..-|-++-+.+.- .|.. --|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88777777777788776542 234554444 3555553 457888776544444332322 2222 2356666
Q ss_pred HHHHHcCCHHHHHHHHHh--C-C--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 284 DLLGRAGLLEEAENFIAS--M-P--MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~--~-~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.++.+.|- .-|+. . | ..|.....+.|+.+|..+ +..+-+++++.-..
T Consensus 280 NMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 280 NMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSNRS 331 (440)
T ss_pred HHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhc
Confidence 77766651 11211 1 2 335566778888888654 45555555544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.8 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=19.8
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 194 (511)
++.++.. |-+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 446667777777777777777765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.01 E-value=40 Score=35.85 Aligned_cols=177 Identities=15% Similarity=0.064 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 75 SWNSILGGLVRFGSVDDACRVFNQMPKRSLV---SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
....-+++..+...++.|..+-+.-..+... ....-.+-+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 3455677778888888888887664432111 2223344566789999999988766533 2332 24445555
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-ehHHHHHHHHHcCChHHHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS-AYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
.....+-..+++.+.+.|+. +...-+.|+.+|.|.++.++-.+..+...+-... -....+..+.+.+-.++|.-+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 55666666778888888865 4445567899999999999888877766521111 133445555555555555554433
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHc
Q 010405 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266 (511)
Q Consensus 231 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 266 (511)
... +......+ +-..+++++|.+++..+
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 221 22222222 34456677776666655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.60 E-value=42 Score=35.68 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=44.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh-cCCCCchhHHHHHHHHHHcCC
Q 010405 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 357 (511)
++..+.+..+++.+..+.+..+.. ++..|..++..+.+.+..+.-.+...++++ +...+...-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 455566667777777777777533 677787788877777766655555555544 222222233345555555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.87 E-value=4.6 Score=30.55 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
+..+-+..+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 556666667777888999999999999999999999999999998755433 336776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.72 E-value=1.7 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQS 132 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (511)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.37 E-value=4.9 Score=30.09 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+..+.+.|. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3366666777777788899999999999999999999999999988753432 4446666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.17 E-value=17 Score=36.97 Aligned_cols=150 Identities=18% Similarity=0.128 Sum_probs=80.9
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 85 RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
-.|+++.|-.++..+++ ..-+.++.-+-++|-.++|+++ .+|...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 35667776666665553 2334455566666767766654 2332221 1223455666666665443
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 010405 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244 (511)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 244 (511)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|.. |. .|
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~-AF- 728 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NL-AF- 728 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhccc-ch-HH-
Confidence 32 44567777777777777777777776543 2455555566666655444444444444421 21 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHc
Q 010405 245 AVLSACSHLGWVEKGFYYFHSM 266 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~ 266 (511)
-++...|+++++.+++.+-
T Consensus 729 ---~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 ---LAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHcCCHHHHHHHHHhc
Confidence 1334456666666655443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.89 E-value=8.3 Score=33.46 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCCHH
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~ 191 (511)
.+.|+ +.|+..|-++...+.--++.....|...|. ..+.+++++++-.+.+. +-.+|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34443 567777777777665545555555554444 67788888888777663 22567788888888888888888
Q ss_pred HHH
Q 010405 192 LAM 194 (511)
Q Consensus 192 ~A~ 194 (511)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.80 E-value=1.2 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHH
Q 010405 343 GRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.76 E-value=21 Score=30.25 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=48.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCCHHHHHHHHHhcCCCCeee--hH---HH--HHHHHHcCChH
Q 010405 151 QLGALDYGNWVYSYIQKKCIKLDSILC-AALIDMYAKCGSIDLAMQVFHSYGDKDVSA--YT---SA--IFGLAMNGHSI 222 (511)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~---~l--i~~~~~~g~~~ 222 (511)
+.+..++|...|..+.+.|...-+..- --........|+...|...|+++...+... .. .| .-.+..+|-++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 444455555555555555433222211 111222344555555555555544321111 10 01 11123345555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+.....+.+...+-+.-...-..|.-+-.+.|++..|.++|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5444444433332222222233344444455555555555555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.44 E-value=0.76 Score=37.84 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 290 (511)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.+..+....+++... ...+ ..+++.+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhcc
Confidence 445555566666666667666665544456666667777777666566555554221 1111 23444455555
Q ss_pred CHHHHHHHHHhC
Q 010405 291 LLEEAENFIASM 302 (511)
Q Consensus 291 ~~~~A~~~~~~~ 302 (511)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 555555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=85.35 E-value=9.3 Score=28.86 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
-++|.-|-+.+...+-. ...+--+-+..+...|++++|..+.+.+.-||..+|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 35555555555444311 22333333455667889999988888888888888877654 3567777777777777766
Q ss_pred CCCCCHHHHH
Q 010405 235 GISPDSISYI 244 (511)
Q Consensus 235 g~~p~~~t~~ 244 (511)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.29 E-value=32 Score=32.03 Aligned_cols=16 Identities=13% Similarity=-0.105 Sum_probs=9.6
Q ss_pred HHHHcCCchHHHHHHH
Q 010405 351 IYVETLKGENAEEVRK 366 (511)
Q Consensus 351 ~~~~~g~~~~A~~~~~ 366 (511)
.+.+.++|++|.+.++
T Consensus 255 ~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHhhcCHHHHHHHHH
Confidence 3455666666666665
|
It is also involved in sporulation []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.9 Score=39.03 Aligned_cols=89 Identities=8% Similarity=-0.005 Sum_probs=41.5
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~ 326 (511)
|.++|.+++|+..|..... +.| ++.++..-..+|.+..++..|+.-.+.. .+. .-...|..-..+-...|+..+
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445555555555554443 223 4444544555555555555444433332 110 011223333333344455666
Q ss_pred HHHHHHHHhhcCCCC
Q 010405 327 GQRIGNMLIESDQNH 341 (511)
Q Consensus 327 a~~~~~~~~~~~p~~ 341 (511)
|.+-++.++++.|.+
T Consensus 184 AKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 184 AKKDCETVLALEPKN 198 (536)
T ss_pred HHHhHHHHHhhCccc
Confidence 666666666666654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.03 E-value=2.1 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHh
Q 010405 312 GTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
+.|...|...|++++|+.+++++.
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHH
Confidence 333333444444444444444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.78 E-value=1.7 Score=25.00 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.78 E-value=41 Score=32.85 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=115.9
Q ss_pred cCCHHHHHHHHHhcCCC----CeeehHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHH
Q 010405 187 CGSIDLAMQVFHSYGDK----DVSAYTSAIFGLAM-NGHSIEAFELFENMKSKGISPDS----ISYIAVLSACSHLGWVE 257 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~ 257 (511)
.|+.++|.+.+..+... ....|-+|+.+-.. ..++.+|+++|++..-. -|.. ....--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999988753 44567777776554 56889999999998653 3433 34444455678889999
Q ss_pred HHHHHHHHchhhcCCCCCHhHHH-HHHHHHHHc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010405 258 KGFYYFHSMFDVHGIKPELDHYA-CMVDLLGRA---GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333 (511)
Q Consensus 258 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (511)
++..+-......+.-.|-...|. .++.++.+. ...+.-..++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877777666555555443332 233334333 33455556666664222345788888888999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHHc-----CCchHHHHHHHHHH
Q 010405 334 LIESDQNHDGRYILLSNIYVET-----LKGENAEEVRKTMR 369 (511)
Q Consensus 334 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~ 369 (511)
+..+...+ ..-...+..|... .+.++|.+.+..+.
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 99965332 3333344444332 34566666555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.56 E-value=0.48 Score=39.02 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHH
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 224 (511)
++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555666677777777777665555677777777777777666666665552221 3333444444444555454
Q ss_pred HHHHHH
Q 010405 225 FELFEN 230 (511)
Q Consensus 225 ~~~~~~ 230 (511)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.40 E-value=63 Score=34.72 Aligned_cols=193 Identities=13% Similarity=0.058 Sum_probs=104.0
Q ss_pred HhcCCHHHHHHHHHhcC----CCCee-------ehHHHHHHH-HHcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYG----DKDVS-------AYTSAIFGL-AMNGHSIEAFELFENMKSK----GISPDSISYIAVLS 248 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~----~~~~~-------~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 248 (511)
....++++|..+..+.. .++.. .|+++-... ...|++++|+++.+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678888887776543 33222 355554332 3467888888888877653 12234455566666
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH-----HHHHHHcCCHH--HHHHHHHhC-----CCCC----CHHHHH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM-----VDLLGRAGLLE--EAENFIASM-----PMKP----DNVIWG 312 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~--~A~~~~~~~-----~~~p----~~~~~~ 312 (511)
+..-.|++++|..+.....+. .-.-+...+... ...+..+|... +.+..|... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999988887766652 112233332222 23345566322 222233222 1122 233444
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhh----cCCCCch---hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIE----SDQNHDG---RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
.++.++.+ .+.+..-.....+ ..|..-. .+..|+..+...|+.++|...++++......+.+...|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 45555433 3333333333333 2332222 22367888888999999999988887655544344333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.67 E-value=2.8 Score=25.40 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQ 131 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (511)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666667777777777777666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.22 E-value=2.7 Score=39.19 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=65.8
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 010405 283 VDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
..-|.++|.+++|++.|... ...| |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 34688999999999999764 6677 888888888999999999999998888888766555566665656566667776
Q ss_pred HHHHHHHH
Q 010405 361 AEEVRKTM 368 (511)
Q Consensus 361 A~~~~~~m 368 (511)
|.+-.+..
T Consensus 184 AKkD~E~v 191 (536)
T KOG4648|consen 184 AKKDCETV 191 (536)
T ss_pred HHHhHHHH
Confidence 66555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.22 E-value=52 Score=32.86 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCCCHHHHH-HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH---HHcCCHHHHHHHHHhC--CCCCCHH
Q 010405 236 ISPDSISYI-AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL---GRAGLLEEAENFIASM--PMKPDNV 309 (511)
Q Consensus 236 ~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~p~~~ 309 (511)
..|+..|+. .++.-+-..|-...|...+..+.. -.+|+...|..+++.- ..+| +..+..+++.| ..-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 456666654 456666777888888888888876 3456677777777643 2334 67777777776 2226788
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhh-cCCCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNH 341 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 341 (511)
.|...+.--..+|..+.+-.++.++.+ ++|..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888887888999988888888777 56643
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.08 E-value=7.7 Score=35.95 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=68.3
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCe-----eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-KDV-----SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (511)
.|.+....+...++..-....++++++..+-++.. ++. .+-.+.+. ++..=++++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34455555666666666667788888887766653 211 11111222 223346778888888888889999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+++.+++.+.+.++..+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999888887777665
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.06 E-value=11 Score=37.08 Aligned_cols=125 Identities=9% Similarity=0.011 Sum_probs=76.7
Q ss_pred ccCCHHHHHH-HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHH
Q 010405 252 HLGWVEKGFY-YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 252 ~~g~~~~a~~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
..|++-.|-+ ++..+.. +.-.|+ +.......+...|+++.+.+.+... .+.....+...++......|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~-~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-QQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHh-CCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3466655544 4444433 333343 3333344566778888888877665 12234556677778888888888888
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCce
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 379 (511)
...+.++..+-.++......+..--..|-+|++.-.|++....+.+.+.++
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888888875555555444444444556778888888888776554444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.67 E-value=12 Score=30.69 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=36.8
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMPMKP-DNVIWGTLLGACR 319 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 319 (511)
...++.+++..++..|.- +.|+ ...-..-.-.+...|++++|..+|++....+ ....-.+|+..|.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 346777777777777754 4444 2222233344566777888888887774332 3333334444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.57 E-value=34 Score=30.19 Aligned_cols=176 Identities=15% Similarity=0.028 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHhhCC--CCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMP--KRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
.|-+.-|+--|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+.+..- ..+...-.-++.-.|++..|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHH
Confidence 344444444444432 343 3578888888888999999999998888764322 222222223334457788777766
Q ss_pred HHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHH-HHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-
Q 010405 163 SYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQ-VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD- 239 (511)
Q Consensus 163 ~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 239 (511)
.+.-+.. -.|-...|--+.. ..-++.+|.. +.++....|..-|..-|-.|.-..-.++ .++++.... -.-+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~-a~~n~ 230 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKAD-ATDNT 230 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-ccchH
Confidence 5555543 2232334433332 2334555543 4445555565666655555443222222 223333221 1111
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 240 ------SISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 240 ------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
..||-.|..-+...|++++|..+|+....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34666777777888888888888887776
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.65 E-value=2.8 Score=23.79 Aligned_cols=24 Identities=8% Similarity=-0.116 Sum_probs=12.3
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
.++...|+.++|.+.++++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334445555555555555555544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.53 E-value=20 Score=30.54 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc
Q 010405 223 EAFELFENMKSKGISPD-SISYIAVLSACSHL 253 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 253 (511)
+|+.-|++.+. +.|+ ..++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 66666666665 4555 35666676666544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.07 E-value=11 Score=24.74 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCc
Q 010405 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420 (511)
Q Consensus 345 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 420 (511)
...++-++.+.|++++|.+..+.+.+. .|...++.+.-..+.++|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999988762 34455555544555667777663
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.88 E-value=36 Score=29.44 Aligned_cols=88 Identities=7% Similarity=-0.046 Sum_probs=57.5
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCCHhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHY-----ACMVDLLGRAGLLEEAENFIASMPMKPDNVI--WGTLLGACRV 320 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~ 320 (511)
..+...|++++|...++.... .|....+ -.|.......|.+++|+.+++...- ++-.. ...-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHH
Confidence 456777888888888877664 1222222 3455667788899999988887531 11111 1222245788
Q ss_pred cCchhHHHHHHHHHhhcCCC
Q 010405 321 HRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~ 340 (511)
.|+.++|...|++.++..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 89999999999988887643
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.80 E-value=11 Score=28.61 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=32.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 300 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
-.+.+-|++.+..+.+.+|++.+++..|.++++-+.....+....|-.++
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 33456688888888888888888888888888888774443333555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.34 E-value=6.8 Score=35.90 Aligned_cols=57 Identities=7% Similarity=-0.105 Sum_probs=51.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
....|...|.+.+|.++.++++.++|-+...+..|++.|+..|+--+|.+-++++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 346689999999999999999999999999999999999999998888888887754
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.22 E-value=3.9 Score=23.49 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+|..++..|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
|
... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.07 E-value=18 Score=27.23 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
.-++.+-++.+...++.|++....+.++||.+.+++..|.++++-++... ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 33455566666677788999999999999999999999999998776432 223445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 5e-14
Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 7/194 (3%)
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
+ A L + P L LL +LD + + A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 181 IDMYAKCGSIDLAMQVFHSYGDK-------DVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
+ LA + + + + Y + + G A G E + +K
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
G++PD +SY A L G+K + A ++ RA +L+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 294 EAENFIASMPMKPD 307
+ + P
Sbjct: 254 AVHKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.1 bits (97), Expect = 4e-04
Identities = 9/91 (9%), Positives = 26/91 (28%), Gaps = 7/91 (7%)
Query: 70 QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV-------VLISGFAQNGRPKE 122
+ + + A + + + ++ G+A+ G KE
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLG 153
+ + ++ L P+ + L +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.1 bits (97), Expect = 4e-04
Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 15 NSLIQFYSVCGRVRDARWVFD-------ESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
+ + + ++ A + + L + +N+++ G+ R G E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 68 MPQR----NDVSWNSILGGLVRFG-SVDDACRVFNQMPKR 102
+ + +S+ + L + R R QM +
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 5e-09
Identities = 75/595 (12%), Positives = 171/595 (28%), Gaps = 191/595 (32%)
Query: 4 KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD----ESDD--LDVVSWNSMINGYVRNGE 57
K FV+ L Y ++ E + + + + +
Sbjct: 74 KQEEMVQKFVEEVLRINYK---------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 58 ILEGLKLFDKMP--------------QRNDVSWNSILGGLVRFG-SV--DDACR---VFN 97
+ F K + N ++ G++ G + D C V
Sbjct: 125 V------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 98 QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAILVSLLSACAQLGAL 155
+M + + W+ L + +Q L ++PN S +L
Sbjct: 179 KMDFK--IFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIH 228
Query: 156 DYGNWVYSYIQ----KKC-IKLDSILCAALIDMYA-KCGSIDLAMQVFHSYGDKDVSAYT 209
+ ++ + C + L ++ A + + C ++ + K V+ +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-------KILLTTRFKQVTDFL 281
Query: 210 SAIFG--LAMNGHSI-----EAFELFE---NMKS-------KGISPDSISYIAVLSACSH 252
SA ++++ HS+ E L + + +P +S IA
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 253 LGWVEKGFYYFHSMFD---------VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
W + H D ++ ++P ++ L + + + I P
Sbjct: 342 ATWD----NWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRL----SVFPPSAH-I---P 388
Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
++IW ++ + + ++ + L+E + + S IY+E LK + E
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQPK-ESTISIPS-IYLE-LKVKLENE 442
Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
+ + +++ H + + + I + Y Y+
Sbjct: 443 --YALHRS---------IVD--------------HYNIPKTFDSDDLIPPYLDQYFYS-- 475
Query: 424 TRSVMFDIEEEEKETVIGYHSEK--------------LALAF--------GLICTKPGSV 461
IG+H + L F GS+
Sbjct: 476 -----H----------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 462 IRIVKNIR-----ICSDCHSAMKLVSKVFKRKI-SIRD--RKHYHHFEDGSCSCL 508
+ ++ ++ IC + ++R + +I D K + + L
Sbjct: 521 LNTLQQLKFYKPYICDND--------PKYERLVNAILDFLPKIEENLICSKYTDL 567
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.08 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.98 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.81 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.61 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.61 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.58 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.53 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.45 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.42 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.34 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.32 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.17 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.0 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.99 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.83 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.7 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.52 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.48 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.45 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.42 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.3 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.18 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.12 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.04 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.92 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.78 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.73 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.54 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.5 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.94 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.84 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.71 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.13 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.04 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.91 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.8 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.08 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.99 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.35 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.3 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.57 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.03 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.82 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.63 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 91.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.98 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.85 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.4 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.07 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.81 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.77 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 88.66 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.61 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.66 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.96 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.84 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.35 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.77 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.56 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.34 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.02 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.15 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=306.38 Aligned_cols=360 Identities=10% Similarity=0.016 Sum_probs=309.1
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC-------------------ChhHHHHHHHHHHHcCChHHHHHHHcc
Q 010405 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-------------------DVVSWNSMINGYVRNGEILEGLKLFDK 67 (511)
Q Consensus 7 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 67 (511)
.++|+.+++.++.+|.++|++++|+++|+++.+. ++.+|+.++.+|.+.|++++|+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567777888888888888888888888754333 367788888888888888888888887
Q ss_pred CCC--CC-hhHH--------------------------------------HHHHHHHHhcCCHHHHHHHHhhCCC--CCh
Q 010405 68 MPQ--RN-DVSW--------------------------------------NSILGGLVRFGSVDDACRVFNQMPK--RSL 104 (511)
Q Consensus 68 m~~--~~-~~~~--------------------------------------~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 104 (511)
|.+ |+ ...+ +.++.+|.+.|++++|.++|+++.+ ++.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 754 22 2222 2224455677788888888888876 688
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|.++++.+.+.. +.+..+++.++.+|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999998765 4478889999999999999999999999998764 56789999999999
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.+
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998753 467799999999999999999999999999864 3478899999999999999999999
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHH
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-------PMKPD--NVIWGTLLGACRVHRNAEMGQRIGN 332 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (511)
+|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+|...|++++|++.++
T Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 463 YLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999873 3446889999999999999999999999987 44787 7899999999999999999999999
Q ss_pred HHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 333 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
++.+..|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=302.42 Aligned_cols=357 Identities=10% Similarity=-0.042 Sum_probs=317.9
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCC--CCChhHHHHHHHHHH
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMP--QRNDVSWNSILGGLV 84 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~ 84 (511)
+++..++.++..|.+.|++++|+.+|+++. .||..+|..++.+|.+.|++++|+.+|+++. .++..+++.++.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 577889999999999999999999999886 5788999999999999999999999999994 589999999999999
Q ss_pred hcCCHHHHHHHHhhCCCC-------------------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 010405 85 RFGSVDDACRVFNQMPKR-------------------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 145 (511)
+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+. .+...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHH
Confidence 999999999999965433 478999999999999999999999999988642 233333332
Q ss_pred --------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 146 --------------------------------------LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 146 --------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
+..|.+.|++++|.++|+.+.+. +++..+++.++.+|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 44556788999999999998876 58899999999999999
Q ss_pred CCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 188 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+++++.... +.+..++..++..|.+.|++++|.++|+
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999863 477899999999999999999999999998653 4468899999999999999999999999
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ... ++..+|..++.+|...|++++|.++|+++.+..|.++
T Consensus 398 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 475 (597)
T 2xpi_A 398 KSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475 (597)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99872 2345889999999999999999999999987 333 4788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.+|..++.+|.+.|++++|.++++++.+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999775
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=255.32 Aligned_cols=184 Identities=14% Similarity=0.181 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCccHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA---------LDYGNWVYSYIQKKCIKLDSI 175 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 175 (511)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788888888889999999999999888888999999999888886654 678888888888888888989
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999988888864 7888899999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc
Q 010405 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 289 (511)
+.|++++|.++|++|.+ .+..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999987 78899999999888888753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=231.11 Aligned_cols=349 Identities=13% Similarity=0.043 Sum_probs=305.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 90 (511)
+...+.+.|++++|.+.|+.+. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566778999999999998764 44566788888889999999999999988764 46788999999999999999
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 91 DACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 91 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
+|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998753 4 45689999999999999999999999998863 33456777888899999999999999999998
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISY 243 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 243 (511)
.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++.... .| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 45678999999999999999999999998864 35567889999999999999999999999875 34 57788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM-KPDNVIWGTLLGACRVH 321 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~ 321 (511)
..+..++...|++++|...|+++.+. .+.+..+|..+...|.+.|++++|.+.|+++ .. .++..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 89999999999999999999999872 2334778999999999999999999999987 22 34778999999999999
Q ss_pred CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999863
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=225.72 Aligned_cols=343 Identities=12% Similarity=0.045 Sum_probs=302.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 83 (511)
+...+..+...+...|++++|...++... +.+..+|..+...+.+.|++++|++.|+++.+ | +..+|..+..+|
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 45677778889999999999999998644 55778999999999999999999999999864 4 456799999999
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 84 VRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
.+.|++++|...|+++.+ | +...+..+...+...|++++|++.|+++.+.. +.+..+|..+...+...|++++|..
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998763 4 45678889999999999999999999998863 3467899999999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
.++++++.. +.+...+..+...+...|++++|...|++... .+..+|..+...|...|++++|+..|+++.+.+ +
T Consensus 191 ~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 191 HFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 999999975 45678899999999999999999999997653 356789999999999999999999999999863 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010405 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLL 315 (511)
Q Consensus 238 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 315 (511)
.+..++..+..++...|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 25678999999999999999999999999873 4567889999999999999999999999987 4455 577899999
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
..+...|++++|...++++.+..|+++..|..++..+...|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999998887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=245.52 Aligned_cols=200 Identities=14% Similarity=0.191 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---------H
Q 010405 121 KEALALFREMQSLDLEPNS-AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS---------I 190 (511)
Q Consensus 121 ~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 190 (511)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777766554 45888999999999999999999999999999999999999999987765 7
Q ss_pred HHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHc
Q 010405 191 DLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266 (511)
Q Consensus 191 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 266 (511)
++|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999964 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 010405 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVH 321 (511)
Q Consensus 267 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 321 (511)
.+ .|+.||..+|++|+++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98 899999999999999999999999999999999 7889999999999988653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-24 Score=215.92 Aligned_cols=356 Identities=9% Similarity=-0.083 Sum_probs=301.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHh
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVR 85 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 85 (511)
...+..+...|.+.|++++|+..|+++. .||+.+|..+..++.+.|++++|++.|+++.+ .+..++..+..+|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999876 57899999999999999999999999998864 456789999999999
Q ss_pred cCCHHHHHHHHhhCCCCC--------------------------------------------------------------
Q 010405 86 FGSVDDACRVFNQMPKRS-------------------------------------------------------------- 103 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~-------------------------------------------------------------- 103 (511)
.|++++|...|+++...+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999998763211
Q ss_pred --------------------hhHHHHHHHHHHH---CCChhHHHHHHHHHHH-----CCCC--------CCHhHHHHHHH
Q 010405 104 --------------------LVSWVVLISGFAQ---NGRPKEALALFREMQS-----LDLE--------PNSAILVSLLS 147 (511)
Q Consensus 104 --------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--------p~~~t~~~ll~ 147 (511)
...+..+...+.. .|++++|+..|+++.+ ..-. .+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 2233333343443 8999999999999987 3112 23567888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHH
Q 010405 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 224 (511)
.+...|++++|...++.+.+.... ..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999988633 88899999999999999999999998765 3667899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 010405 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-- 302 (511)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 302 (511)
+..|+++..... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++
T Consensus 324 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988643 25678888999999999999999999999873 2335678899999999999999999999887
Q ss_pred --CCCCC----HHHHHHHHHHHHh---cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 303 --PMKPD----NVIWGTLLGACRV---HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 303 --~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+..|+ ...|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22233 4488889999999 999999999999999999999999999999999999999999999988864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=209.02 Aligned_cols=320 Identities=12% Similarity=0.072 Sum_probs=263.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 010405 40 LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISG 113 (511)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 113 (511)
.++..|..+...+.+.|++++|+.+|+++.+ .+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3566788888888999999999999888764 4677888888899999999999999988753 356788889999
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCH----hHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNS----AILVSL------------LSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
|.+.|++++|++.|+++.+. .|+. .++..+ ...+...|++++|...++.+.+.. +.+..++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 99999999999999998875 3443 454444 444888999999999999998874 5578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHH-------
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-ISYIAV------- 246 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l------- 246 (511)
..++.+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+. ..+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 46788999999999999999999999999874 4443 334333
Q ss_pred -----HHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 010405 247 -----LSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTL 314 (511)
Q Consensus 247 -----l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 314 (511)
...|...|++++|..+|+.+.+. .|+ ..++..++.++.+.|++++|.+.++++ ...| +...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999873 344 457889999999999999999999987 4445 67899999
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH------------HHHcC-----CchHHHHHHHH
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI------------YVETL-----KGENAEEVRKT 367 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 367 (511)
..+|...|++++|...++++.++.|+++.++..+..+ |...| +.+++.+.+++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999888843 55555 44556666654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=207.66 Aligned_cols=346 Identities=12% Similarity=0.036 Sum_probs=281.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHH
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGG 82 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 82 (511)
.++..+..+...|.+.|++++|+.+|+++. +.+..+|..+..++...|++++|+..|+++.+ .+..++..+..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 356778999999999999999999999765 45788999999999999999999999999875 457889999999
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-Ch---hHHHHHH------------HHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK--R-SL---VSWVVLI------------SGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 144 (511)
|.+.|++++|...|+++.+ | +. ..|..++ ..+.+.|++++|+..|+++.+.. +.+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999999865 3 33 5666654 44899999999999999998764 457889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHH----------
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSA---------- 211 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l---------- 211 (511)
+..++...|++++|...++.+.+.. +.+..++..++.+|...|++++|.+.|+++.. | +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998874 55788999999999999999999999998864 3 33445444
Q ss_pred --HHHHHHcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 212 --IFGLAMNGHSIEAFELFENMKSKGISPD-----SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 212 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
...+...|++++|+..|+++... .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...|..+..
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 78899999999999999999884 454 347888889999999999999999999872 2346889999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----chhHHHHHHHH-HhhcCCCCch-
Q 010405 285 LLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGA------------CRVHR-----NAEMGQRIGNM-LIESDQNHDG- 343 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~- 343 (511)
+|...|++++|.+.++++ ...|+ ...+..+..+ |...| +.+++.+.+++ ..+..|++..
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~ 417 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999987 56664 4555555522 33334 66778888886 6667775421
Q ss_pred ---------hHHHHHHHHHHcCCchH
Q 010405 344 ---------RYILLSNIYVETLKGEN 360 (511)
Q Consensus 344 ---------~~~~l~~~~~~~g~~~~ 360 (511)
.+..+..+|...|+.+.
T Consensus 418 ~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 418 EEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred chHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34455555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=198.47 Aligned_cols=355 Identities=10% Similarity=-0.014 Sum_probs=286.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHH
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLV 84 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 84 (511)
...+..+...|.+.|++++|+..|+++. +.++.+|..+..+|.+.|++++|++.|+++.+ .+..++..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3557778889999999999999999765 45788999999999999999999999999864 45778889999999
Q ss_pred hcCCHHHHHHHHhhCCC-CChh----------------------------------------------------------
Q 010405 85 RFGSVDDACRVFNQMPK-RSLV---------------------------------------------------------- 105 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~-~~~~---------------------------------------------------------- 105 (511)
..|++++|...|+.+.. |+..
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99999999998864421 1100
Q ss_pred -----------HHHHHHHHHH--------HCCChhHHHHHHHHHHHCCCCCC--------HhHHHHHHHHHHhcCCHHHH
Q 010405 106 -----------SWVVLISGFA--------QNGRPKEALALFREMQSLDLEPN--------SAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 106 -----------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~p~--------~~t~~~ll~~~~~~~~~~~a 158 (511)
.+..+...+. ..|++++|+.+|+++.+.. |+ ..++..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1111111111 1247889999999998753 43 23567777888899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (511)
...++.+.+.. |+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++....
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999874 4578899999999999999999999998764 466789999999999999999999999998854
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----C
Q 010405 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM----PMKP----D 307 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~ 307 (511)
. .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ +..+ .
T Consensus 341 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 P-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp T-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 2 24678888999999999999999999999873 2445778999999999999999999999886 1111 2
Q ss_pred HHHHHHHHHHHHhc----------CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 308 NVIWGTLLGACRVH----------RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 308 ~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...+..+...+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 22344445667777 999999999999999999999999999999999999999999999987643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=198.30 Aligned_cols=337 Identities=10% Similarity=-0.040 Sum_probs=281.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCC------------
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN------------ 72 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------ 72 (511)
.||+.++..+...|.+.|++++|...|+++. +.+..+|..+..++.+.|++++|+..|+++...+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 4789999999999999999999999999754 4567899999999999999999999998774211
Q ss_pred ----------------------------------------------------------------------hhHHHHHHHH
Q 010405 73 ----------------------------------------------------------------------DVSWNSILGG 82 (511)
Q Consensus 73 ----------------------------------------------------------------------~~~~~~li~~ 82 (511)
...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2222223333
Q ss_pred HHh---cCCHHHHHHHHhhCCC----------------C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 83 LVR---FGSVDDACRVFNQMPK----------------R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 83 ~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
+.. .|++++|...|+++.+ + +..+|..+...+...|++++|+..|+++.+.. |+..++
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH
Confidence 333 8999999999988654 1 34578899999999999999999999998864 448889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcC
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNG 219 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 219 (511)
..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+..+|..+...|...|
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC
Confidence 999999999999999999999999874 45678899999999999999999999998753 46678899999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHH---cCCH
Q 010405 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGR---AGLL 292 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~ 292 (511)
++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...+.+ .|++
T Consensus 353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 9999999999998753 235678888999999999999999999999873322233 3488999999999 9999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 293 EEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 293 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
++|...++++ ...| +...|..+...+...|++++|...++++.+..|+++..+..+
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999887 3334 677888899999999999999999999999999887766655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-19 Score=175.73 Aligned_cols=308 Identities=10% Similarity=0.030 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHC
Q 010405 44 SWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQN 117 (511)
Q Consensus 44 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 117 (511)
.|..+...+...|++++|+..|+++.+ .+..++..+...|...|++++|...|+++.+ .+...|..+...+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 444444455555555555555554432 2344455555555555555555555555432 2344555566666666
Q ss_pred CChhHHHHHHHHHHHCCCC--CCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 118 GRPKEALALFREMQSLDLE--PNSAILVSL------------LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
|++++|+..|++..+.... .+...+..+ ...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 6666666666655543210 122223222 455666677777777777766653 3455666667777
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH------------HHH
Q 010405 184 YAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYI------------AVL 247 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~------------~ll 247 (511)
|...|++++|...|+++.+ .+..+|..+...|...|++++|...|++..+.. |+ ...+. .+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766543 244566666677777777777777777766532 22 22221 224
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPEL--DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
..+...|++++|...++.+.+...-.+.. ..+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 55677788888888888777622111111 23445677777888888888887776 2234 56677777777888888
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
+++|...++++.+..|+++..+..+..++..
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 8888888888888888777777666655543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-19 Score=172.35 Aligned_cols=296 Identities=12% Similarity=0.060 Sum_probs=248.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
|+..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456778888999999999999999998753 357789999999999999999999999998763 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--ccHHHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CCeeehHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIK--LDSILCAAL------------IDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSA 211 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 211 (511)
+...|++++|...++.+.+.... .+...+..+ ...|...|++++|.+.|+++.+ .+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999987420 345555555 5889999999999999998764 466788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHH-----------
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----------- 280 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 280 (511)
...+...|++++|+..++++.... +.+..++..+...+...|++++|...|+...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998863 3467888899999999999999999999998732 22233332
Q ss_pred -HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 281 -CMVDLLGRAGLLEEAENFIASM-PMKPD-N----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 281 -~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++.+..|+++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3367799999999999999887 33343 3 234456778999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010405 354 ETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~ 371 (511)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999999864
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-19 Score=171.23 Aligned_cols=277 Identities=12% Similarity=-0.031 Sum_probs=201.5
Q ss_pred cCCHHHHHH-HHhhCCC--C-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 010405 86 FGSVDDACR-VFNQMPK--R-----SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157 (511)
Q Consensus 86 ~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 157 (511)
.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455666665 5554432 1 23456666677777777777777777776653 3355666667777777777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHH---------------HHHHHHHcC
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTS---------------AIFGLAMNG 219 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g 219 (511)
|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777776654 34566667777777777777777777766543 1 1122211 233334889
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 220 HSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
++++|+..|+++....... +..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998753221 4788889999999999999999999999872 234578899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC-----------chhHHHHHHHHHHcCCchHHHHHH
Q 010405 299 IASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH-----------DGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 299 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
++++ ...| +...|..+...+...|++++|...++++.+..|++ ..+|..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9987 3334 57789999999999999999999999999988877 789999999999999999999887
Q ss_pred H
Q 010405 366 K 366 (511)
Q Consensus 366 ~ 366 (511)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=165.28 Aligned_cols=282 Identities=10% Similarity=-0.025 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 149 (511)
...+..+...+...|++++|..+|+++.+ .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33444444455555555555555555432 123344445555555566666666555555432 22445555555555
Q ss_pred HhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHH
Q 010405 150 AQLG-ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAF 225 (511)
Q Consensus 150 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 225 (511)
...| ++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..++..+...|...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 5555 5666666665555543 23445555566666666666666666655442 23445555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC-------CCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-------IKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
..|++..... +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666542 22455666666677777777777777766665221 123356777777788888888888887
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH-HHcCC
Q 010405 299 IASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY-VETLK 357 (511)
Q Consensus 299 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~ 357 (511)
+++. ...| +...|..+...+...|++++|...++++.+..|+++..+..++.++ ...|+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 7765 2223 4567777777788888888888888888888888877877777777 34444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-19 Score=179.17 Aligned_cols=334 Identities=9% Similarity=-0.027 Sum_probs=267.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CChh----------
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ-RNDV---------- 74 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~---------- 74 (511)
.++..+..+...|.+.|++++|++.|++.. +.+..+|..+...+...|++++|+..|+.+.. |+..
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 467889999999999999999999999765 55788899999999999999999999864421 1100
Q ss_pred -----------------------------------------------------------HHHHHHHHHHh--------cC
Q 010405 75 -----------------------------------------------------------SWNSILGGLVR--------FG 87 (511)
Q Consensus 75 -----------------------------------------------------------~~~~li~~~~~--------~g 87 (511)
....+...+.. .|
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 11222222211 24
Q ss_pred CHHHHHHHHhhCCC--CC--------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 010405 88 SVDDACRVFNQMPK--RS--------LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157 (511)
Q Consensus 88 ~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 157 (511)
++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++..+. .|+..++..+...+...|++++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 78899999998765 32 235777888899999999999999999885 5668889999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++...
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999875 45788899999999999999999999998764 45678999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC----CHhHHHHHHHHHHHc----------CCHHHHHHHHH
Q 010405 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP----ELDHYACMVDLLGRA----------GLLEEAENFIA 300 (511)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~ 300 (511)
. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...+.+. |++++|...|+
T Consensus 374 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 3 33566888899999999999999999999876321111 122344556778888 99999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH
Q 010405 301 SM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 301 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 346 (511)
+. ...| +...|..+...+...|++++|...++++.++.|.++....
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 87 3334 6778899999999999999999999999999998765543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-18 Score=161.83 Aligned_cols=264 Identities=11% Similarity=-0.022 Sum_probs=229.7
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 010405 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181 (511)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 181 (511)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456678888999999999999999999998764 4456677778889999999999999999999874 45778899999
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 010405 182 DMYAKCG-SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257 (511)
Q Consensus 182 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 257 (511)
..|...| ++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998765 3567899999999999999999999999988642 24566777888999999999
Q ss_pred HHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCchhH
Q 010405 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM----------KPDNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 258 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 326 (511)
+|...++.+.+ -.+.+...+..+...+.+.|++++|...++++ .. ..+...|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 23445788999999999999999999999876 11 2345688899999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=166.46 Aligned_cols=302 Identities=12% Similarity=0.143 Sum_probs=126.4
Q ss_pred hcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 010405 23 VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK- 101 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 101 (511)
+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5677888888888885553 7888888888888888888888654 5666788888888888888888886666554
Q ss_pred -CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 010405 102 -RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180 (511)
Q Consensus 102 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 180 (511)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+ ..|..|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 345667778888888888888777763 366678888888888888888888888765 367778
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010405 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 181 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
++++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.|+ -...++..|.+.|.+++|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHH
Confidence 888888888888888888773 67788888888888888888855544322 2333 3445777788888888888
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHH--cCCHHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCchhHHHHHH
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGR--AGLLEEAENFIAS-MPMKP------DNVIWGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~-~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (511)
.+++.... .. +-....|+-|.-+|++ -+++.+.+++|.. +.+.| +...|..+...|...++++.|....
T Consensus 228 ~lLe~aL~-le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 228 TMLEAALG-LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTT-ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhC-Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 88877764 11 2335666666666665 3455556665543 23222 3556777777788888888776643
Q ss_pred HHHhhc------------CCCCchhHHHHHHHHH
Q 010405 332 NMLIES------------DQNHDGRYILLSNIYV 353 (511)
Q Consensus 332 ~~~~~~------------~p~~~~~~~~l~~~~~ 353 (511)
-.-... .+.+...|...+..|.
T Consensus 306 ~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 306 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 332211 3445555555555554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-16 Score=160.74 Aligned_cols=349 Identities=11% Similarity=-0.008 Sum_probs=295.8
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CChhHHHHH
Q 010405 10 DVFVKNSLIQFYSV----CGRVRDARWVFDESD-DLDVVSWNSMINGYVR----NGEILEGLKLFDKMPQ-RNDVSWNSI 79 (511)
Q Consensus 10 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~l 79 (511)
|+.....|...|.. .+++++|...|++.. ..++.++..|...|.. .+++++|++.|++..+ .++..+..|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56677778888888 899999999998654 4577889999999998 8999999999998865 467788889
Q ss_pred HHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 80 LGGLVR----FGSVDDACRVFNQMPK-RSLVSWVVLISGFAQ----NGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 80 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
..+|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+..+...+.
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 999988 8899999999998765 467788889999988 889999999999998865 6788888998888
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHHHHHHH----
Q 010405 151 Q----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAM---- 217 (511)
Q Consensus 151 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 217 (511)
. .++.++|...+++..+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTS
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Confidence 8 899999999999999875 56778888999987 8899999999998765 466678888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC--
Q 010405 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-----GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-- 290 (511)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-- 290 (511)
.++.++|+.+|++..+.| +...+..+...+... ++.++|..+|++..+ . .+...+..|...|.+.|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSE 344 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCc
Confidence 899999999999998765 455666777777776 899999999999987 3 34567788888888867
Q ss_pred -CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHH
Q 010405 291 -LLEEAENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE----TLKGENA 361 (511)
Q Consensus 291 -~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 361 (511)
++++|.+.|++.-...++..+..|...+.. .+++++|...++++.+.. ++..+..|+.+|.. .+++++|
T Consensus 345 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 789999999887323578888888888888 899999999999998864 46889999999999 8999999
Q ss_pred HHHHHHHHhCCC
Q 010405 362 EEVRKTMRKRKI 373 (511)
Q Consensus 362 ~~~~~~m~~~g~ 373 (511)
.+.+++..+.+.
T Consensus 423 ~~~~~~A~~~~~ 434 (490)
T 2xm6_A 423 WAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
Confidence 999999988663
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=168.40 Aligned_cols=261 Identities=9% Similarity=-0.101 Sum_probs=202.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34557777888888888888888888877653 3467777888888888888888888888887764 445777888888
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-C----------eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD--K-D----------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS-PDSISYIAVLS 248 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 248 (511)
+|...|++++|.+.|+++.+ | + ...+..+...+...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888877654 1 1 223344577888899999999999999885322 25788889999
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 326 (511)
.+...|++++|...|+++.+. .+.+..++..+..+|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999872 3445789999999999999999999999887 3445 57789999999999999999
Q ss_pred HHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 327 GQRIGNMLIESDQN------------HDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 327 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
|...++++.++.|. +...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998776 367889999999999999998887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=175.71 Aligned_cols=331 Identities=13% Similarity=0.007 Sum_probs=172.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhc
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRF 86 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 86 (511)
+++.+|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++ +++.+.+.|+.+|.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHh
Confidence 45569999999999999999999999764 6777999999999999999999998877765 5668899999999999
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010405 87 GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 166 (511)
|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.+.++
T Consensus 108 g~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA- 174 (449)
T 1b89_A 108 NRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 174 (449)
T ss_dssp -CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-
T ss_pred CCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-
Confidence 999999888854 77789999999999999999999999977 36899999999999999999999888
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246 (511)
Q Consensus 167 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (511)
.++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.+++...... +-....|+.+
T Consensus 175 -----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel 247 (449)
T 1b89_A 175 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 247 (449)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHH
T ss_pred -----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHH
Confidence 278899999999999999999987777655 333334468889999999999999999887643 3345566666
Q ss_pred HHHHhc--cCCHHHHHHHHHHchhhcCCCC------CHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 247 LSACSH--LGWVEKGFYYFHSMFDVHGIKP------ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318 (511)
Q Consensus 247 l~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 318 (511)
.-++++ .+++.+.++.|..- -+++| +...|..++..|..-++++.|....-+-+ |+...-..+....
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~ 322 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDII 322 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHH
Confidence 555554 44555555555432 34555 46779999999999999999888665543 2333333344555
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.+..+.+.--+...--++..| ...+.|..++...=+...+.+++++..
T Consensus 323 ~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 323 TKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred hchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 566776665555555555555 557777777777667777776665443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-17 Score=165.80 Aligned_cols=359 Identities=12% Similarity=0.017 Sum_probs=231.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC------------CCChhHHHHHHHHHHHcCChHHHHHHHccCCC-------
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD------------DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ------- 70 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 70 (511)
....||.|...|...|++++|++.|++.. .....+|+.+...|...|++++|+..|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35678888899999999999988886431 23456788899999999999999888876642
Q ss_pred ----CChhHHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-ChhHHHHHHHH---HHHCCChhHHHHHHHHHHHCCCCCC
Q 010405 71 ----RNDVSWNSILGGLVRF--GSVDDACRVFNQMPK--R-SLVSWVVLISG---FAQNGRPKEALALFREMQSLDLEPN 138 (511)
Q Consensus 71 ----~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~ 138 (511)
....++..+..++.+. +++++|...|++..+ | ++..+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1244566555555554 468899999988653 3 44555555544 345677788888888877653 335
Q ss_pred HhHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHH
Q 010405 139 SAILVSLLSACAQL----GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSA 211 (511)
Q Consensus 139 ~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 211 (511)
..++..+...+... ++.++|.+.+++..+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56666666555543 56778888888888774 45677888889999999999999999887754 3 44556666
Q ss_pred HHHHHHc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC
Q 010405 212 IFGLAMN-------------------GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272 (511)
Q Consensus 212 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 272 (511)
...|... +..++|+..|++..... +.+..++..+...+...|++++|...|++..+ ...
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~ 365 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS-KEL 365 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCC
Confidence 5555322 23567777777776643 22455677788888888999999999988876 222
Q ss_pred CCCH--hHHHHHHH-HHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 273 KPEL--DHYACMVD-LLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 273 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
.|.. ..+..+.. .+...|+.++|+..|++. .+.|+...+.. ....+.+++++.++.+|+++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2221 12233332 234678888998888775 55565443322 23445667777888899999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010405 349 SNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 349 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
+.+|...|++++|.+.+++..+.+-......+|
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHCC----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999988876544344444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-17 Score=150.94 Aligned_cols=271 Identities=12% Similarity=0.030 Sum_probs=208.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSL----VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 156 (511)
.-....|+++.|...+++....++ .....+..+|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 334557888888888877665432 2445567888888888888876644 1 3566777888888888888888
Q ss_pred HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 010405 157 YGNWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235 (511)
Q Consensus 157 ~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (511)
+|.+.++.+...+. |.+...+..+..+|...|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 88888888887764 44566777788889999999999999988 456678888899999999999999999999875
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHH
Q 010405 236 ISPDSISY---IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVI 310 (511)
Q Consensus 236 ~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 310 (511)
.|+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3554321 12334445569999999999999983 4567889999999999999999999999986 4445 6778
Q ss_pred HHHHHHHHHhcCchhH-HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 311 WGTLLGACRVHRNAEM-GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 311 ~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
+..++..+...|+.++ +.++++++.+.+|+++.+ .+...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999999876 678999999999998754 34556666666665443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=165.82 Aligned_cols=299 Identities=12% Similarity=0.029 Sum_probs=212.5
Q ss_pred CChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHH-HHccCCC--C-----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 25 GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK-LFDKMPQ--R-----NDVSWNSILGGLVRFGSVDDACRVF 96 (511)
Q Consensus 25 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~ 96 (511)
+.++.+...|+.+...+.. ++...|++++|++ .|++..+ | +...+..+...|.+.|++++|...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445555555555433322 3344578888888 8876653 1 3456778888899999999999999
Q ss_pred hhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 010405 97 NQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173 (511)
Q Consensus 97 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 173 (511)
+++.+ .+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.... +
T Consensus 88 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 165 (368)
T 1fch_A 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-Y 165 (368)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-T
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-c
Confidence 88753 356788888999999999999999999888764 447788888889999999999999999998886432 2
Q ss_pred HHHHH----------------HHHHHHHhcCCHHHHHHHHHhcCC--C---CeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 174 SILCA----------------ALIDMYAKCGSIDLAMQVFHSYGD--K---DVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 174 ~~~~~----------------~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
...+. .+...+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22221 233334 88999999999988764 3 46678889999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----
Q 010405 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP----- 306 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----- 306 (511)
... +.+..++..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|...|+++ ...|
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 753 335678888999999999999999999999872 2345788999999999999999999999876 1112
Q ss_pred -------CHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 307 -------DNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 307 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
...+|..+..++...|+.++|..++++.++
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 167899999999999999999998876544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-17 Score=155.74 Aligned_cols=258 Identities=8% Similarity=-0.090 Sum_probs=198.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 445666677777777777777777776643 3356667777777777777777777777777663 34566777777777
Q ss_pred HhcCCHHHHHHHHHhcCC--C-CeeehHHH--------------HH-HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD--K-DVSAYTSA--------------IF-GLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (511)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|+..++++.... +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777776543 1 22223222 22 3667788999999999998764 3367788889
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNA 324 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 324 (511)
...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999872 2345788999999999999999999999887 3334 577899999999999999
Q ss_pred hHHHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 325 EMGQRIGNMLIESDQN------------HDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 325 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
++|...++++.+..|. ++.++..++.+|.+.|++++|..++++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999998 678999999999999999999998863
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=164.26 Aligned_cols=260 Identities=11% Similarity=0.013 Sum_probs=202.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455688888889999999999999988753 366788999999999999999999999888763 4467888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc---------cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---CeeehHHHHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKL---------DSILCAALIDMYAKCGSIDLAMQVFHSYGD--K---DVSAYTSAIFG 214 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~ 214 (511)
+...|++++|...++++.+..... ...++..+...|.+.|++++|.+.|+++.+ | +..+|..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999988753110 122334458889999999999999998764 3 56688899999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 294 (511)
|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+..+|.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999988753 335778899999999999999999999999872 23347889999999999999999
Q ss_pred HHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 295 AENFIASM-PMKP-------------DNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 295 A~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
|.+.|+++ ...| +...|..+..++...|+.+.+..+.++..
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999876 1111 25688999999999999998888776633
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-16 Score=155.52 Aligned_cols=332 Identities=11% Similarity=-0.007 Sum_probs=278.1
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CChhHHHHH
Q 010405 10 DVFVKNSLIQFYSV----CGRVRDARWVFDESD-DLDVVSWNSMINGYVR----NGEILEGLKLFDKMPQ-RNDVSWNSI 79 (511)
Q Consensus 10 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~l 79 (511)
++..+..|..+|.. .+++++|...|++.. ..++.++..|...|.. .+++++|++.|++..+ .+...+..|
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 153 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM 153 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56678888899998 899999999998755 4577888889999988 8899999999998865 467788889
Q ss_pred HHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 80 LGGLVR----FGSVDDACRVFNQMPK-RSLVSWVVLISGFAQ----NGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 80 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
..+|.. .++.++|...|++..+ .+..++..|...|.+ .+++++|++.|++..+.| +..++..+...+.
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 899988 8899999999998754 577889999999998 899999999999998865 6678888888887
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHHHHHHHc---
Q 010405 151 Q----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAMN--- 218 (511)
Q Consensus 151 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~--- 218 (511)
. .++.++|...+++..+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Confidence 6 789999999999998875 45677788888888 8999999999998765 4666788888888887
Q ss_pred --CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----c
Q 010405 219 --GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG---WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----A 289 (511)
Q Consensus 219 --g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 289 (511)
++.++|+.+|++..+.| +...+..+...+...| +.++|.++|++..+ . .++..+..|...|.. .
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 89999999999998875 4566677777776656 78999999999987 2 467788899999998 8
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCC---CchhHHHHHHHHHH
Q 010405 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQN---HDGRYILLSNIYVE 354 (511)
Q Consensus 290 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 354 (511)
+++++|.+.|++.-...+...+..|...|.. .++.++|...|+++.+.+|+ ++.....|..++..
T Consensus 381 ~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999987323467788888888887 89999999999999998854 66666666655543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-15 Score=156.47 Aligned_cols=359 Identities=11% Similarity=0.045 Sum_probs=241.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHH-
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGG- 82 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~- 82 (511)
-|..+|..++. +.+.|++++|+.+|+++. +.+...|...+..+.+.|++++|..+|+++.+ |+...|...+..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 36778899998 478899999999999865 44677899999999999999999999999976 777777777653
Q ss_pred HHhcCCHHHHHH----HHhhCC-----C-CChhHHHHHHHHHHH---------CCChhHHHHHHHHHHHCCCCCCHhHHH
Q 010405 83 LVRFGSVDDACR----VFNQMP-----K-RSLVSWVVLISGFAQ---------NGRPKEALALFREMQSLDLEPNSAILV 143 (511)
Q Consensus 83 ~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~t~~ 143 (511)
....|+.+.|.+ +|++.. . ++...|...+....+ .|++++|..+|++..+....+....|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 345677766654 666542 1 355678887776655 688999999999988731111123333
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCcc--------HHHHHHHHHHHHhc----CC
Q 010405 144 SLLSAC-------------AQLGALDYGNWVYSYIQ------KKC---IKLD--------SILCAALIDMYAKC----GS 189 (511)
Q Consensus 144 ~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~y~~~----g~ 189 (511)
...... ...++++.|..++.... +.. ++|+ ...|...+...... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 222211 12344566666655522 111 2333 24555554433221 22
Q ss_pred H----HHHHHHHHhcCC---CCeeehHHHHHHHHH-------cCChH-------HHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010405 190 I----DLAMQVFHSYGD---KDVSAYTSAIFGLAM-------NGHSI-------EAFELFENMKSKGISP-DSISYIAVL 247 (511)
Q Consensus 190 ~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~t~~~ll 247 (511)
. ++|..+|++... .+...|...+..+.+ .|+.+ +|..+|++..+. +.| +...+..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHH
Confidence 2 366677776654 355667777777665 57776 788888887652 233 466777777
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCC-H-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcC
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPE-L-DHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGA-CRVHR 322 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g 322 (511)
..+...|++++|..+|+.+.+ ..|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 777888888888888888876 3454 2 46777778788888888888888776 33332 2222222222 33578
Q ss_pred chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 88888888888888888888888888888888888888888888877654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-16 Score=147.34 Aligned_cols=246 Identities=10% Similarity=0.012 Sum_probs=201.6
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 010405 111 ISGFAQNGRPKEALALFREMQSLDLEPNS--AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188 (511)
Q Consensus 111 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 188 (511)
+.-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999998876543 3443 4556778999999999999986644 24667888999999999999
Q ss_pred CHHHHHHHHHhcC----CC-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 189 SIDLAMQVFHSYG----DK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 189 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
+.++|++.++++. .| +...+..+...|...|++++|++.+++ +.+...+..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677778899999999999999987 457788888999999999999999999
Q ss_pred HHchhhcCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 264 HSMFDVHGIKPELDH---YACMVDLLGRAGLLEEAENFIASM-P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
+.+.+. .|+... ...++..+...|++++|..+|+++ . ...+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999873 355321 123345555569999999999998 2 23478889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchH-HHHHHHHHHhC
Q 010405 339 QNHDGRYILLSNIYVETLKGEN-AEEVRKTMRKR 371 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 371 (511)
|+++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 56888888763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=149.80 Aligned_cols=223 Identities=12% Similarity=0.010 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH
Q 010405 43 VSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQ 116 (511)
Q Consensus 43 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 116 (511)
..|..+...+...|++++|+.+|+++.+ .+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 4455555666666666666666665542 2445555566666666666666666665532 245566666667777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 010405 117 NGRPKEALALFREMQSLDLEPNSAILVSL--------------LS-ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181 (511)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 181 (511)
.|++++|++.|+++.... +.+...+..+ .. .+...|++++|...++.+.+.. +.+..++..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 777777777776666542 1122222222 11 2445555666666666665553 23455555566
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 182 DMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 182 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
..|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 666666666666655554432 233445555555555555555555555554432 1134444455555555555555
Q ss_pred HHHHHHHchh
Q 010405 259 GFYYFHSMFD 268 (511)
Q Consensus 259 a~~~~~~~~~ 268 (511)
|...++.+.+
T Consensus 259 A~~~~~~a~~ 268 (327)
T 3cv0_A 259 AAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=172.25 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMP-------KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 145 (511)
..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCeeehHHHHHHHHHcC
Q 010405 146 LSACAQLGAL-DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----KDVSAYTSAIFGLAMNG 219 (511)
Q Consensus 146 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 219 (511)
|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+.. +.+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999984 78999999999999999999999999877765444444333332221 12344555666666655
Q ss_pred C---------hHHHHHHHHHH
Q 010405 220 H---------SIEAFELFENM 231 (511)
Q Consensus 220 ~---------~~~A~~~~~~m 231 (511)
. .++-.++|++-
T Consensus 287 ~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 287 RVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCCCCCSSCHHHHHHHHHHH
T ss_pred CCcCccccCCHHHHHHHHHHH
Confidence 2 34555555553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-14 Score=150.12 Aligned_cols=315 Identities=12% Similarity=0.078 Sum_probs=221.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010405 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACR 94 (511)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 94 (511)
.-+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3345566666777777777776531 1222222322 566777777777765 345667788888888888888888
Q ss_pred HHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 010405 95 VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174 (511)
Q Consensus 95 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 174 (511)
.|.+. .|...|..++..+.+.|++++|.+.|...++.. +++...+.++.+|++.++++....+. + .++.
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 88664 566777778888888888888888887666543 33333335777788887777543332 2 3345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
..+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 56666888888888888888888875 47888888888888888888888765 25678888888888888
Q ss_pred CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--cCchhHHHHH
Q 010405 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRV--HRNAEMGQRI 330 (511)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~--~g~~~~a~~~ 330 (511)
++..|...... +..++..+..++..|.+.|.+++|+.+++.. +.+| ....|+-|...+.+ -++..++.+.
T Consensus 1265 Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888775543 2345667778999999999999999999776 5554 34466555555544 4566677777
Q ss_pred HHHHhhcCC-----CCchhHHHHHHHHHHcCCchHHHH
Q 010405 331 GNMLIESDQ-----NHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 331 ~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
|..-..+.| .+...|.-++..|.+.|+|+.|..
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 776665555 566788899999999999999984
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-17 Score=170.54 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=111.7
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-------DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (511)
...-..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|...|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34446689999999999999999999997653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 243 YIAVLSACSHLGW-VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 243 ~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
|+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....+.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999987 4788999999998 799999999999998887765555554443333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-14 Score=144.87 Aligned_cols=329 Identities=11% Similarity=0.074 Sum_probs=240.6
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHH
Q 010405 39 DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISG 113 (511)
Q Consensus 39 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 113 (511)
+.|..+|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 447889999998 5889999999999999976 3 566899999999999999999999999865 677778877753
Q ss_pred -HHHCCChhHHHH----HHHHHHH-CCCCC-CHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 114 -FAQNGRPKEALA----LFREMQS-LDLEP-NSAILVSLLSACAQ---------LGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 114 -~~~~g~~~~A~~----~~~~m~~-~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
....|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+++++........+|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 345677777665 7776654 35444 45667776666544 68899999999999984211112344
Q ss_pred HHHHHHH-------------HhcCCHHHHHHHHHh------cCC-------CC--------eeehHHHHHHHHHc----C
Q 010405 178 AALIDMY-------------AKCGSIDLAMQVFHS------YGD-------KD--------VSAYTSAIFGLAMN----G 219 (511)
Q Consensus 178 ~~li~~y-------------~~~g~~~~A~~~~~~------~~~-------~~--------~~~~~~li~~~~~~----g 219 (511)
....... .+.++++.|..++.. ..+ |+ ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 4333211 134567778777664 111 11 12455444333222 2
Q ss_pred Ch----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHchhhcCCCC-CHhHHH
Q 010405 220 HS----IEAFELFENMKSKGISPDSISYIAVLSACSH-------LGWVE-------KGFYYFHSMFDVHGIKP-ELDHYA 280 (511)
Q Consensus 220 ~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~p-~~~~~~ 280 (511)
+. .+|+.+|++..... +-+...|..+...+.. .|+++ +|..+|++..+ .+.| +...|.
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l~~ 325 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYF 325 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--HhCcccHHHHH
Confidence 22 47888999988752 2356777777777764 79887 89999999985 3345 588899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H-HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH-HHHcC
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKPD-N-VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI-YVETL 356 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g 356 (511)
.++..+.+.|++++|.++|+++ ...|+ . ..|..++..+.+.|+.++|..+|+++.+..|.+...|...+.+ +...|
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999987 44564 3 5899999999999999999999999999888776666655544 34689
Q ss_pred CchHHHHHHHHHHhC
Q 010405 357 KGENAEEVRKTMRKR 371 (511)
Q Consensus 357 ~~~~A~~~~~~m~~~ 371 (511)
+.++|.++++...+.
T Consensus 406 ~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 406 DKSVAFKIFELGLKK 420 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 999999999987664
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-15 Score=135.76 Aligned_cols=224 Identities=10% Similarity=-0.041 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cc----HHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK--LD----SILCA 178 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 178 (511)
..|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777777777777777777777665 56677777777777777777777777776664211 11 35556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
.+...|.+.|++++|.+.|++..+.+.. ...+...|++++|+..++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 6666666666666666666554331110 123334444455555555444421 1122333444444444444444
Q ss_pred HHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444444431 1122334444444444444444444444433 1112 233444444444444444444444444444
Q ss_pred cC
Q 010405 337 SD 338 (511)
Q Consensus 337 ~~ 338 (511)
..
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 43
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-13 Score=145.09 Aligned_cols=308 Identities=13% Similarity=0.061 Sum_probs=232.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC-CCC-----hhHHHHHH---------------------------HHHHHcCChH
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESD-DLD-----VVSWNSMI---------------------------NGYVRNGEIL 59 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~-~~~-----~~~~~~li---------------------------~~~~~~g~~~ 59 (511)
--...+..|...|.+.+|++++++.. +++ ...-+.++ ..+...|.++
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence 33667788889999999999998765 222 22333333 3455667777
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 010405 60 EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 60 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
+|..+|++....+ ...+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|.
T Consensus 1067 EAf~IYkKa~~~~-~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~ 1134 (1630)
T 1xi4_A 1067 EAFAIFRKFDVNT-SAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDP 1134 (1630)
T ss_pred HHHHHHHHcCCHH-HHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CCh
Confidence 8888877764211 1122222 26778888888887663 4677888999999999999999988553 377
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcC
Q 010405 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219 (511)
Q Consensus 140 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 219 (511)
..|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcC
Confidence 788889999999999999999998887764 33334445888899998888644443 3456667778888888999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 010405 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 299 (511)
++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|....
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999874 478888889999999999998888763 3578888888888899998888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 300 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
..+. -++..+..++..|...|.+++|+.+++..+.++|.+...|.-|+.+|++.
T Consensus 1274 l~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1274 LHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred Hhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 6543 35556668888899999999999999999999998888888888888775
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-15 Score=133.68 Aligned_cols=220 Identities=11% Similarity=-0.029 Sum_probs=192.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-------eeeh
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-D-------VSAY 208 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-------~~~~ 208 (511)
...+..+...+...|++++|...++.+++.. .+..++..+..+|...|++++|.+.|++..+ | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888999999999999999999999987 7888999999999999999999999998765 2 1 4778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 288 (511)
..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+.+ ..+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH
Confidence 89999999999999999999999884 4553 345667889999999999987 223346788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 289 AGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999987 3333 677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 010405 367 TMRKR 371 (511)
Q Consensus 367 ~m~~~ 371 (511)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=134.79 Aligned_cols=241 Identities=10% Similarity=-0.065 Sum_probs=176.7
Q ss_pred HCCChhHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 116 QNGRPKEALALFREMQSLDL---EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...++++++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888887776531 1135667777777888888888888888887764 4467778888888888888888
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhh
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 269 (511)
|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887654 35667888888888888888888888888774 455544445555567778999999999877762
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 270 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++.+..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23343344 4677777888889999988876 33332 467888888999999999999999999999987654
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 010405 344 RYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 56777888888887765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-15 Score=130.68 Aligned_cols=194 Identities=13% Similarity=0.008 Sum_probs=134.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4445555566666666666666666665443 234455666666666666666666666666542 123456666666
Q ss_pred HHhcc-----------CCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 010405 249 ACSHL-----------GWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLL 315 (511)
Q Consensus 249 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 315 (511)
++... |++++|...|++..+ ..| +...+..+..+|...|++++|.+.|++. ....+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 77777 999999999999887 234 4778888999999999999999999886 2126788899999
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.++...|++++|+..++++++..|+++.++..++.++...|++++|.+.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-14 Score=130.90 Aligned_cols=242 Identities=10% Similarity=-0.039 Sum_probs=118.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhc
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVSLLSACAQL 152 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~ 152 (511)
.....+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+ ..+|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444555555555555554432 1233445555555555555555555555544211111 11244444555555
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+ +..
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------------------------~al 135 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-------------------------------KQI 135 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-------------------------------GGC
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-------------------------------HHh
Confidence 55555555555554432 2233444444444444444444444444 444
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC----CCC
Q 010405 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL---LEEAENFIASM----PMK 305 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~~~ 305 (511)
+.. +.+...+..+...+...+++++|...|+.+.+. .+.+...+..+...+...|+ +++|...+++. ...
T Consensus 136 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 136 RPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp CSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred hcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 321 112333333331222233555555555555541 11224444455555555554 44444444433 111
Q ss_pred CC------HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 306 PD------NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 306 p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
|+ ...|..+...+...|++++|...++++.+++|+++.+...+......
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 22 24566677778888999999999999999999887776666554433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-13 Score=123.49 Aligned_cols=225 Identities=13% Similarity=-0.052 Sum_probs=143.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ----LGALDYGNWVYSYIQKKCIKLDSILCA 178 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (511)
+..++..+...|...|++++|++.|++..+. .+..++..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777777777777777777663 245566667777777 777777777777777664 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 179 ALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAM----NGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 179 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 67777776 6777777776665543 244556666666666 666777777777666654 34455555555
Q ss_pred Hhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 010405 250 CSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AGLLEEAENFIASMPMKPDNVIWGTLLGACRV- 320 (511)
Q Consensus 250 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~- 320 (511)
+.. .++.++|...|++..+ . .+...+..+...|.. .+++++|.+.|++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 655 6777777777776665 2 234555666666666 66677776666655111224555555666665
Q ss_pred ---cCchhHHHHHHHHHhhcCCC
Q 010405 321 ---HRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 321 ---~g~~~~a~~~~~~~~~~~p~ 340 (511)
.+++++|...++++.+.+|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 66677777777776666664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-14 Score=141.31 Aligned_cols=344 Identities=11% Similarity=-0.010 Sum_probs=237.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHHcCCh---HHHHHHHccCCCCChhHHHHHHHHHHhcC----
Q 010405 16 SLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEI---LEGLKLFDKMPQRNDVSWNSILGGLVRFG---- 87 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g---- 87 (511)
.+...+.+.|++++|.++|++.. ..++.++..+...|...|+. ++|++.|++..+.++..+..|..++...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 36677788999999999998755 24666777777788888888 99999999998878788888888666655
Q ss_pred -CHHHHHHHHhhCCCC-ChhHHHHHHHHHHHCCChhH---HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 88 -SVDDACRVFNQMPKR-SLVSWVVLISGFAQNGRPKE---ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 88 -~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
+.++|...|++..++ +..++..|...|...+...+ +.+.+......| +......+...|...+.++++....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 788999999987654 45678888888888766544 455555554444 4556777888888888655554443
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHhcCCC---CeeehHHHHHHHHHc----CChHHHHHHHHHHH
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCG---SIDLAMQVFHSYGDK---DVSAYTSAIFGLAMN----GHSIEAFELFENMK 232 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 232 (511)
....+.-...++..+..|..+|.+.| +.++|.+.|++..+. +...+..+...|... ++.++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 33333222334448888999999999 999999999987653 333336677777554 68999999999987
Q ss_pred hCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHHhCCC
Q 010405 233 SKGISPDSISYIAVLSA-C--SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-----LLEEAENFIASMPM 304 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~ 304 (511)
.| +...+..+... + ...++.++|..+|++..+ .| ++..+..|...|. .| ++++|.+.|++.-
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 45556666665 3 568999999999999987 44 5677888888887 55 9999999999987
Q ss_pred CCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 010405 305 KPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE----TLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 305 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 374 (511)
..++..+..|...|.. ..+.++|...++++.+. .++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5577778777777765 34999999999999874 346788899999975 45899999999998887753
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-14 Score=125.20 Aligned_cols=194 Identities=15% Similarity=0.050 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666777777777777777777766643 3356666677777777777777777777776664 335566666666
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 183 MYAKC-----------GSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 183 ~y~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
+|.+. |++++|+..|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666666666655442 2 34455555556666666666666666665544 45555556666
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
++...|++++|+..|+...+. -+.+...+..+..++.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666551 1223455555666666666666666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-14 Score=135.43 Aligned_cols=246 Identities=9% Similarity=0.068 Sum_probs=195.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA-LDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
...|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..++...|+ +++|+..++++++.. +-+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3578888888889999999999999888753 3367788888888889996 999999999998875 447788888999
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-LGWVEK 258 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~ 258 (511)
+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.... +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999988764 46678888888999999999999999999886432 56788888888887 565566
Q ss_pred H-----HHHHHHchhhcCCCC-CHhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 010405 259 G-----FYYFHSMFDVHGIKP-ELDHYACMVDLLGRAG--LLEEAENFIASMPMKP-DNVIWGTLLGACRVHR------- 322 (511)
Q Consensus 259 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 322 (511)
| +..|++..+ +.| +...|..+..+|.+.| ++++|.+.++++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477888776 344 4678888888888888 6888988888774445 4567777888877763
Q ss_pred -c-hhHHHHHHHHH-hhcCCCCchhHHHHHHHHHHc
Q 010405 323 -N-AEMGQRIGNML-IESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 323 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 355 (511)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 889998888888777666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-13 Score=136.00 Aligned_cols=324 Identities=12% Similarity=-0.014 Sum_probs=213.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC-------C----CChhHHHHHHHHHHHc--CChHHHHHHHccCCC--C-Chh
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD-------D----LDVVSWNSMINGYVRN--GEILEGLKLFDKMPQ--R-NDV 74 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~--~-~~~ 74 (511)
..+|+.+...|...|++++|...|++.. . ....++..+..++... +++++|++.|++..+ | ++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4678899999999999999998887532 1 1345676666666654 468999999999864 4 444
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 010405 75 SWNSILGG---LVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQ----NGRPKEALALFREMQSLDLEPNSAILVS 144 (511)
Q Consensus 75 ~~~~li~~---~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 144 (511)
.+..+..+ +...++.++|.+.|++..+ .+..++..+...+.. .|++++|.+.+++..... +.+..++..
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 55555544 3456777888888876542 355666666655544 467889999999887764 457788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-------------------CCHHHHHHHHHhcCC---
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-------------------GSIDLAMQVFHSYGD--- 202 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-------------------g~~~~A~~~~~~~~~--- 202 (511)
+...+...|++++|...++++.+.. |.+..++..+...|... +..+.|...|+...+
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999874 44677777777776532 235667777776543
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHchhhcCCCCCHhHH
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI--SYIAVLS-ACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 279 (511)
.+..+|..+...|...|++++|+..|++.......|... .+..+.. .....|+.++|+..|.+..+ +.|+....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHH
Confidence 467789999999999999999999999998865443321 2222322 24578999999999999887 55654332
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 280 ACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
... ...+.++++.. ...| +..+|..|...+...|++++|++.|+++++..|.+|.+...+
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 222 22333444333 2233 567899999999999999999999999999988877665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=121.77 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=195.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHH
Q 010405 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAI 212 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 212 (511)
+..++..+...+...|++++|...+++..+. .+...+..+...|.. .+++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6678888999999999999999999999984 356788889999999 9999999999998765 4677888999
Q ss_pred HHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 213 FGLAM----NGHSIEAFELFENMKSKGISPDSISYIAVLSACSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 213 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|..+|++..+ .+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 9999999999999987 33 5667888889
Q ss_pred HHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH--
Q 010405 285 LLGR----AGLLEEAENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE-- 354 (511)
Q Consensus 285 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 354 (511)
.|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+..| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999887222467788888888988 9999999999999999876 6788999999999
Q ss_pred --cCCchHHHHHHHHHHhCCC
Q 010405 355 --TLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 355 --~g~~~~A~~~~~~m~~~g~ 373 (511)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-13 Score=122.84 Aligned_cols=206 Identities=11% Similarity=0.053 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456666666666666666666666665542 2344555555555566666666666665555542 2234444444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 262 (511)
|...|+++ +|+++|+++...+..| +...+..+...+...|++++|...
T Consensus 115 ~~~~g~~~-------------------------------~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYE-------------------------------EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHH-------------------------------HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHH-------------------------------HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444 4444444444322223 234455555566666666666666
Q ss_pred HHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 263 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666552 1223556666666666777777777666665 2223 4455666666667777777777777777777776
Q ss_pred Cchh
Q 010405 341 HDGR 344 (511)
Q Consensus 341 ~~~~ 344 (511)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=133.52 Aligned_cols=265 Identities=13% Similarity=0.037 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc-cHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPN----SAILVSLLSACAQLGALDYGNWVYSYIQKK----CIKL-DSI 175 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 175 (511)
..+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...++++.+. +.++ ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344445555555666666666665555432 112 234555555555666666666655554332 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCC--------------------hHHHHH
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGH--------------------SIEAFE 226 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 226 (511)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455556666666666666666554432 11 2245556666666666 666666
Q ss_pred HHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHH
Q 010405 227 LFENMKSK----GISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAEN 297 (511)
Q Consensus 227 ~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 297 (511)
.+.+.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66665431 11111 345667777788888888888888877653211122 3367788888888888888888
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHH
Q 010405 298 FIASM----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 298 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88765 11112 4466777778888899999999998888853322 4577788889999999999999
Q ss_pred HHHHHHh
Q 010405 364 VRKTMRK 370 (511)
Q Consensus 364 ~~~~m~~ 370 (511)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-13 Score=118.36 Aligned_cols=206 Identities=10% Similarity=-0.018 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~--- 83 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG--- 83 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH---
Confidence 445555555555555555555555555432 2234444555555555555555555555554432 22333333333
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN-GHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 262 (511)
..|... |++++|+..++++...+..|+ ...+..+...+...|++++|...
T Consensus 84 ----------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 84 ----------------------------WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp ----------------------------HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444 444444444444444212222 34455555556666666666666
Q ss_pred HHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK--PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 263 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
+..+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.+..|
T Consensus 136 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 136 LKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 6665541 1223455556666666666666666666554 111 2444455555556666666666666666666666
Q ss_pred CCchhH
Q 010405 340 NHDGRY 345 (511)
Q Consensus 340 ~~~~~~ 345 (511)
+++...
T Consensus 214 ~~~~~~ 219 (225)
T 2vq2_A 214 YSEELQ 219 (225)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 655443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-14 Score=126.70 Aligned_cols=211 Identities=11% Similarity=0.055 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 445555666666666666666666665532 2345555555555555566666655555555542 22334444444444
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
.. .|++++|+..++++.+.. +.+...+..+...+...|++++|...++
T Consensus 102 ~~-------------------------------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 102 VV-------------------------------KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp HH-------------------------------TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HH-------------------------------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44 444444444444444332 2234455555566666666666666666
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
++.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..|+++
T Consensus 150 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 150 RAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 66552 1234556666666677777777777766665 222 2456677777777777888888888888888777776
Q ss_pred hhHHHHHHH
Q 010405 343 GRYILLSNI 351 (511)
Q Consensus 343 ~~~~~l~~~ 351 (511)
..+..+..+
T Consensus 228 ~~~~~~~~l 236 (243)
T 2q7f_A 228 LALHAKKLL 236 (243)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHH
Confidence 666555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-14 Score=138.55 Aligned_cols=310 Identities=11% Similarity=0.018 Sum_probs=221.9
Q ss_pred HHHHHHHcCChHHHHHHHccCCC-CChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCChhHHHHHHHHHHHCC-----
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQ-RNDVSWNSILGGLVRFGSV---DDACRVFNQMPKRSLVSWVVLISGFAQNG----- 118 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 118 (511)
+...+.+.|++++|+++|++..+ .+...+..|..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 56677889999999999998865 4566677777888888888 99999999988777778888888666665
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----CHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD---YGNWVYSYIQKKCIKLDSILCAALIDMYAKCG----SID 191 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g----~~~ 191 (511)
++++|+..|++..+.|.. ..+..|...|...+..+ .+.+.+......| +......|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 788999999999987632 36777777777665543 3455555555555 3456777888888887 556
Q ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHH
Q 010405 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNG---HSIEAFELFENMKSKGISPDSISYIAVLSACSHL----GWVEKGFYYFH 264 (511)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~ 264 (511)
.+..+++.....+..++..+...|...| +.++|+..|++..+.| .++...+..+...|... ++.++|..+|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 6777777777777779999999999999 9999999999999887 34555556677777655 79999999999
Q ss_pred HchhhcCCCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----chhHHHHHHHHHhh
Q 010405 265 SMFDVHGIKPELDHYACMVDL-L--GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR-----NAEMGQRIGNMLIE 336 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~ 336 (511)
... +-++..+..|..+ | ...+++++|.+.|++.-...+...+..|...|. .| ++++|...|+++.
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 875 3456677777777 4 468999999999998732337777777777776 55 9999999999988
Q ss_pred cCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010405 337 SDQNHDGRYILLSNIYVE----TLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 337 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 373 (511)
|.++..+..|+.+|.. ..++++|.+.+++..+.|.
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8888999999999987 3499999999999888764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-13 Score=122.34 Aligned_cols=224 Identities=10% Similarity=-0.042 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hHHHHHHH
Q 010405 42 VVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSL----VSWVVLIS 112 (511)
Q Consensus 42 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~ 112 (511)
...+......+...|++++|+..|++..+ .+...+..+...|...|++++|...|++..+ ++. .+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44566778889999999999999999864 3456899999999999999999999998754 222 34899999
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHHHhcCCHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI-DMYAKCGSID 191 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~~~ 191 (511)
.|...|++++|++.|++..+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998864 3466889999999999999999999999998873 45667777777 5444 45788
Q ss_pred HHHHHHHhcCC--C-CeeehHHHHHHHHHcCC---hHHHHHHHHHHHhCC-CCCCH------HHHHHHHHHHhccCCHHH
Q 010405 192 LAMQVFHSYGD--K-DVSAYTSAIFGLAMNGH---SIEAFELFENMKSKG-ISPDS------ISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 192 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~~~~~~g~~~~ 258 (511)
+|.+.|+++.+ | +...|..+...+...|+ +++|...|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88777776553 2 34455555566666565 556666666655421 11221 244445555555555555
Q ss_pred HHHHHHHchh
Q 010405 259 GFYYFHSMFD 268 (511)
Q Consensus 259 a~~~~~~~~~ 268 (511)
|...|+++.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=127.27 Aligned_cols=237 Identities=8% Similarity=-0.110 Sum_probs=163.5
Q ss_pred cCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 86 FGSVDDACRVFNQMPKR-------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
.|++++|...|+++.+. +..+|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777766542 34567777888888888888888888877653 33677778888888888888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
...++.+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ |+.......+..+...|++++|+..+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888887764 34567777888888888888888888887654 444334444445566788888888887776642
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 010405 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVI 310 (511)
Q Consensus 237 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 310 (511)
+++...+ .++..+...++.++|...+....+ ..|+ ...+..+...|.+.|++++|...|++. ...|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 3343444 366667777888888888887764 2232 567788888899999999999998877 555633
Q ss_pred HHHHHHHHHhcCchhHHHHHH
Q 010405 311 WGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 311 ~~~ll~~~~~~g~~~~a~~~~ 331 (511)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566667777777665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-14 Score=137.68 Aligned_cols=263 Identities=11% Similarity=-0.036 Sum_probs=165.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCccHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNS----AILVSLLSACAQLGALDYGNWVYSYIQKK----C-IKLDSILC 177 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 177 (511)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...++++++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3344455556666666666666555532 1122 34555555556666666666665555442 1 11223455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----C----CeeehHHHHHHHHHcCC-----------------hHHHHHHHHHH
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD-----K----DVSAYTSAIFGLAMNGH-----------------SIEAFELFENM 231 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m 231 (511)
..+...|...|++++|...|++..+ . ...+|..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 5566666666666666666655432 0 12345556666666666 66666666665
Q ss_pred HhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 232 KSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 232 ~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
... +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 431 1111 1346667777888888888888888887652211112 236778888888999999998888765
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 303 ----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 303 ----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
+...+ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11111 4567777888899999999999999998853322 347888999999999999999999887
Q ss_pred Hh
Q 010405 369 RK 370 (511)
Q Consensus 369 ~~ 370 (511)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=119.47 Aligned_cols=194 Identities=12% Similarity=0.007 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 149 (511)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788899999999999999999998753 467789999999999999999999999998764 44778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHH
Q 010405 150 AQLGALDYGNWVYSYIQKKCIKL-DSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAF 225 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 225 (511)
...|++++|...++.+.+.+..| +...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998833333 566788888888889999988888887653 34556777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
..++++.... +.+...+..+...+...|+.++|.++++.+.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777776642 23455566666677777777777777777765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.4e-13 Score=118.72 Aligned_cols=197 Identities=11% Similarity=-0.051 Sum_probs=159.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566666666666777777666665542 344566777777777888888888888877653 3357788889999
Q ss_pred Hhcc-CCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 010405 250 CSHL-GWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 250 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 325 (511)
+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999987 434444 678889999999999999999999887 3334 5778888999999999999
Q ss_pred HHHHHHHHHhhcCC-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 326 MGQRIGNMLIESDQ-NHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 326 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+|...++++.+..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999 88899999999999999999999999988754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=131.72 Aligned_cols=227 Identities=8% Similarity=0.040 Sum_probs=193.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCeeehHHHHHH
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS-IDLAMQVFHSYGD---KDVSAYTSAIFG 214 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 214 (511)
...|..+..++...|++++|+..++++++.. +.+..+|+.+..+|.+.|+ +++|++.|+++.. .+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567888888999999999999999999985 5578899999999999997 9999999998875 467789999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH-cCCHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR-AGLLE 293 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 293 (511)
+...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999986432 6788999999999999999999999999982 23357889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC--------
Q 010405 294 EA-----ENFIASM-PMKP-DNVIWGTLLGACRVHR--NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL-------- 356 (511)
Q Consensus 294 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 356 (511)
+| ++.|++. ...| +...|..+...+...| ++++|++.++++ +..|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667665 4455 5678988888888888 689999999998 889999999999999999875
Q ss_pred -CchHHHHHHHHH-Hh
Q 010405 357 -KGENAEEVRKTM-RK 370 (511)
Q Consensus 357 -~~~~A~~~~~~m-~~ 370 (511)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 258999999988 54
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=129.30 Aligned_cols=264 Identities=13% Similarity=0.025 Sum_probs=169.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-ccHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPN----SAILVSLLSACAQLGALDYGNWVYSYIQKK----CIK-LDSILC 177 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 177 (511)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344455556666666666666655532 112 234555555666666666666665554432 111 123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCC--------------------hHHHHHHH
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGH--------------------SIEAFELF 228 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 228 (511)
..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+..+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666655432 11 2255566666666666 66777766
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHH
Q 010405 229 ENMKSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFI 299 (511)
Q Consensus 229 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 299 (511)
++.... +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 665431 1111 1346677777888889999999988887652211111 346788888999999999999988
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHHHH
Q 010405 300 ASM----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 300 ~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
++. +..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 775 11122 4467777788999999999999999998854322 347788999999999999999999
Q ss_pred HHHHhC
Q 010405 366 KTMRKR 371 (511)
Q Consensus 366 ~~m~~~ 371 (511)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=123.44 Aligned_cols=197 Identities=11% Similarity=0.035 Sum_probs=149.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566667777777777777777776643 345667777778888888888888888887653 2367788888999
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMG 327 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 327 (511)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873 2446778999999999999999999999887 3333 677888899999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...++++.+..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=135.57 Aligned_cols=153 Identities=13% Similarity=-0.003 Sum_probs=104.2
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----Hh
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPD----SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LD 277 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 277 (511)
+|..+...|...|++++|+..+++...... .++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 455556666666666666666666543210 111 236677777788888888888888877652211111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcC------CCCch
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESD------QNHDG 343 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 343 (511)
++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++.++. +....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6778888899999999998888775 11122 4567778888999999999999999998852 22345
Q ss_pred hHHHHHHHHHHcCCch
Q 010405 344 RYILLSNIYVETLKGE 359 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~ 359 (511)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 6778888888888764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=127.85 Aligned_cols=243 Identities=14% Similarity=0.070 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSL-------DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------CI 170 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 170 (511)
..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 357888888889999999999988888762 22334566777888888888888888888887764 21
Q ss_pred -CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 171 -KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 171 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
+....++..+...|...|++++|.+.|+++. +++..............+..+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL------------------------EIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------------------HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH------------------------HHHHHhcCCCChHHHHHHHHHHHH
Confidence 2235567778888888888888887776432 222222111111122344455555
Q ss_pred HhccCCHHHHHHHHHHchhhc-----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC------
Q 010405 250 CSHLGWVEKGFYYFHSMFDVH-----GIKP-ELDHYACMVDLLGRAGLLEEAENFIASMP----------MKPD------ 307 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~------ 307 (511)
+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.++++- ..+.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 556666666666665554420 1112 23445556666666666666666655441 1111
Q ss_pred -HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 -NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222233345556667777777777777777778888888888889999999888887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-13 Score=134.26 Aligned_cols=208 Identities=6% Similarity=-0.107 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI-DLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
++++.+.++...+.. +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555444332 34566677777777777777 777777776543 3456777778888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc--------CCHH
Q 010405 231 MKSKGISPDSISYIAVLSACSHL---------GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA--------GLLE 293 (511)
Q Consensus 231 m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 293 (511)
..+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8775 46778888888888888 9999999999999872 233477888999999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 294 EAENFIASM-PMKP----DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 294 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
+|.+.|++. ...| +...|..+..++...|++++|...++++.+++|+++.++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887 4445 7788999999999999999999999999999999999999999999999999999876543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.4e-13 Score=131.34 Aligned_cols=234 Identities=11% Similarity=-0.014 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCccHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL----DL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQKK----C-IKLDSI 175 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 175 (511)
.|..+...|...|++++|+..|++..+. +- +....++..+...+...|++++|...++++.+. + .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444444444444554444444443321 00 112233444444455555555555555444332 1 011233
Q ss_pred HHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC-----C----CeeehHHHHHHHHHcCChHHHHHHHH
Q 010405 176 LCAALIDMYAKCGS-----------------IDLAMQVFHSYGD-----K----DVSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 176 ~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
++..+...|...|+ +++|.+.|++..+ . ...+|..+...|...|++++|+..|+
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45555555555555 5555555544322 1 12345566666677777777777776
Q ss_pred HHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC----CHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 230 NMKSKGI-SPD----SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP----ELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 230 ~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
+..+... .++ ..++..+...+...|++++|...+++..+...-.. ....+..+...|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6654210 011 23677778888888999999888887765221111 14667888889999999999999888
Q ss_pred hC-CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 301 SM-PM---KPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 301 ~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
+. .. .++ ..++..+...+...|++++|...++++.++.+
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 76 11 112 34677788889999999999999999998765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-11 Score=114.53 Aligned_cols=218 Identities=10% Similarity=0.053 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 121 KEALALFREMQSLDLEPNSAILVSLLSACA-------QLGAL-------DYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 121 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
++|+.+|++..... +-+...|..++..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 335666666666654 34665 7788888888773123456677788888888
Q ss_pred cCCHHHHHHHHHhcCC--C-Cee-ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 010405 187 CGSIDLAMQVFHSYGD--K-DVS-AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC-SHLGWVEKGFY 261 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~ 261 (511)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+... ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887654 3 232 677777777788888888888888776532 2334443333222 23688888888
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-P---MKP--DNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887632 234677778888888888888888888776 2 244 35577777777788888888888888888
Q ss_pred hcCCCCc
Q 010405 336 ESDQNHD 342 (511)
Q Consensus 336 ~~~p~~~ 342 (511)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-12 Score=109.02 Aligned_cols=165 Identities=7% Similarity=-0.031 Sum_probs=121.2
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
...|..+...|...|++++|++.|++..+... -+..++..+..++...|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 34466666666666666677777776665421 24566777777777788888888877777652 2334566677777
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 285 LLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
.+...+++++|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 778888888888877765 2333 56677777888888888899999998888888888888888899999999999999
Q ss_pred HHHHHHHhCC
Q 010405 363 EVRKTMRKRK 372 (511)
Q Consensus 363 ~~~~~m~~~g 372 (511)
+.+++..+..
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 8888877643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=124.22 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC----HH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM-P---MKPD----NV 309 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~ 309 (511)
++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++. . ..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4555566666666666666666665542111111 445666777777777777777777654 1 0111 33
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566677777888888888888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-12 Score=124.35 Aligned_cols=163 Identities=10% Similarity=-0.026 Sum_probs=89.3
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhc---CC-CCCHh
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVH---GI-KPELD 277 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~ 277 (511)
+++.+...|...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 3444445555555555555555554321 1000 11355556666666677777766666655411 22 22245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHhhcCCCCchhHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-P---M--KPD-NVIWGTLLGACRVHRN---AEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
++..+...|.+.|++++|.+.+++. . . .|. ...+..+...+...|+ .++|..++++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 5666667777777777777666654 1 0 111 1223444455666666 55666665554 223333456667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010405 348 LSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++..|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777788888888777776644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=124.47 Aligned_cols=228 Identities=9% Similarity=-0.030 Sum_probs=161.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C----CccHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQSL----DLEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKKC--I----KLDSILCA 178 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 178 (511)
....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777777777777777653 1111 23566677777777777777777777766531 1 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCHHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGHSIEAFELFENMKSK----GI-SPDSISYI 244 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 244 (511)
.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888887776543 11 136777888888888888888888887652 23 22356788
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcC---CCCCHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHG---IKPELDHYACMVDLLGRAGL---LEEAENFIASMPMKPDNV-IWGTLLGA 317 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 317 (511)
.+...+...|++++|...+++..+... -+.....+..+...|...|+ +++|..++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899999999999999988876321 11223345678888888998 899999999986555433 56677788
Q ss_pred HHhcCchhHHHHHHHHHhhc
Q 010405 318 CRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~ 337 (511)
+...|++++|...++++.+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999884
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-11 Score=112.04 Aligned_cols=210 Identities=13% Similarity=0.110 Sum_probs=139.1
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHH-------HCCCh-------hHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHh
Q 010405 90 DDACRVFNQMPK---RSLVSWVVLISGFA-------QNGRP-------KEALALFREMQSLDLEP-NSAILVSLLSACAQ 151 (511)
Q Consensus 90 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~ 151 (511)
++|..+|++... .++..|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 455566665543 34556666665554 34665 7777777777663 133 44567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHhcCCCCee---ehHHHHHHHH-HcCChHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDKDVS---AYTSAIFGLA-MNGHSIEAFE 226 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~-~~g~~~~A~~ 226 (511)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|+++|++..+.+.. .|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777642 22233 6777777777778888888888776652222 2322222211 2588888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+|++..+.. +-+...+..++..+...|+.++|..+|++..+...++| ....|..++..+.+.|++++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888877642 22566777778888888888888888888887223455 3567788888888888888888888776
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-10 Score=109.70 Aligned_cols=263 Identities=12% Similarity=-0.023 Sum_probs=173.6
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-Ccc----HHHHH
Q 010405 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSA----ILVSLLSACAQLGALDYGNWVYSYIQKKCI-KLD----SILCA 178 (511)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 178 (511)
..+...+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667788888888777766643222221 445556667777888888877777665311 011 23355
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-------C----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC--C--CHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGD-------K----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS--P--DSISY 243 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~ 243 (511)
.+...|...|++++|...+++... + ...++..+...+...|++++|...+++....... | ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677777888888888877776542 1 1124556677778888888888888887653221 1 13456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHH
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA-----CMVDLLGRAGLLEEAENFIASM-PMKPD-----NVIWG 312 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~ 312 (511)
..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777788889999999999988875322111111111 2334577899999999999887 22221 23456
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCC-----C-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQN-----H-DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+...+...|++++|...++++....+. + ..++..++.+|...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777888999999999999998874321 1 23667788899999999999999987764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-11 Score=101.81 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+..+.... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 344445555555555555555555444432 1234444444444455555555555444444432 22333444444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
...++++.|.+.+.+... .+..+|..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444443321 223334444444444444444444444444321 1123344444444444444444444
Q ss_pred HHHHchh
Q 010405 262 YFHSMFD 268 (511)
Q Consensus 262 ~~~~~~~ 268 (511)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=127.64 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=119.0
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMV 283 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 283 (511)
.+|+.+...|.+.|++++|++.|++.++. .| +..++..+..++.+.|++++|+..|++..+ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 34555566666666666666666666653 33 356677777777777777777777777776 2343 66777788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH
Q 010405 284 DLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 361 (511)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888776 4445 4667888888888888899999999999988898888888899999999999988
Q ss_pred HHHHHHHHh
Q 010405 362 EEVRKTMRK 370 (511)
Q Consensus 362 ~~~~~~m~~ 370 (511)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=116.14 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC------CC-
Q 010405 74 VSWNSILGGLVRFGSVDDACRVFNQMPK--------R---SLVSWVVLISGFAQNGRPKEALALFREMQSL------DL- 135 (511)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~- 135 (511)
.++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555565555555555432 1 2346777888888888888888888777653 11
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeeh
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------CI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 208 (511)
+....++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|.+.|+++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~------- 180 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL------- 180 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Confidence 224567788888888999999999988888764 22 2234567777888888888888877776432
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhc------CCCCC------
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVH------GIKPE------ 275 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~------ 275 (511)
+++..... +..| ...++..+...+...|++++|..+++++.+.. ...+.
T Consensus 181 -----------------~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 181 -----------------EIYQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp -----------------HHHHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred -----------------HHHHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 22211100 0011 12234444555555555555555555554310 11111
Q ss_pred -HhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 276 -LDHYACMVDLLGRAGLLEEAENFIASMP-MKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 276 -~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
...+..+...+...+.+.+|...++... ..| +..+|..+...+...|++++|...+++++++.|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112222233334445555555555552 233 3457778888899999999999999998887664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-10 Score=109.70 Aligned_cols=226 Identities=8% Similarity=-0.002 Sum_probs=122.0
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---Cc-cHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQSLDL-EPN----SAILVSLLSACAQLGALDYGNWVYSYIQKKC--I---KL-DSILCA 178 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~ 178 (511)
....+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.++.+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445556666666666665543210 011 2345555666666666666666665555421 0 11 134555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGHSIEAFELFENMKS-----KGISPDSISYI 244 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 244 (511)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 666666666666666666664432 11 12455556666666666666666666554 22 11245666
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCC--C-CHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIK--P-ELDHYACMVDLLGRAGL---LEEAENFIASMPMKPDNV-IWGTLLGA 317 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 317 (511)
.+...+...|+.++|...+++..+...-. | ....+..+...|...|+ +.+|...+++.+..|+.. .+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 66777777777777777777766532211 1 12334455555555566 666666666654333222 33444455
Q ss_pred HHhcCchhHHHHHHHHHhh
Q 010405 318 CRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~ 336 (511)
+...|++++|...++++.+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5666666666666665554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=122.53 Aligned_cols=189 Identities=12% Similarity=-0.057 Sum_probs=98.7
Q ss_pred CHhHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHH
Q 010405 138 NSAILVSLLSACAQLGAL-DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFG 214 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 214 (511)
+...+..+..++...|++ ++|...++++++.. +.+...+..+..+|.+.|++++|.+.|++..+ |+..+|..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 444444444555555555 55555555554442 22344455555555555555555555554432 333444444444
Q ss_pred HHHc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CCHHHHHHHHHHchhhcCCCC---
Q 010405 215 LAMN---------GHSIEAFELFENMKSKGISPDSISYIAVLSACSHL--------GWVEKGFYYFHSMFDVHGIKP--- 274 (511)
Q Consensus 215 ~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p--- 274 (511)
|... |++++|+..|++..+.. +-+...+..+..++... |++++|...|++..+. .|
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~ 255 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKAS 255 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcc
Confidence 5554 55556666666555532 11344555555555555 6666666666666551 23
Q ss_pred -CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 010405 275 -ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 275 -~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (511)
+...|..+..+|.+.|++++|.+.|++. ...| +...+..+...+...|++++|...+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666654 2233 3445555555565556555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-11 Score=115.12 Aligned_cols=299 Identities=11% Similarity=-0.049 Sum_probs=200.1
Q ss_pred CChhHHHHHHHHH--HhcCCHHHHHHHHhhCCC------C--ChhHHHHHHHHH--HHCCChhHHH---------HHHHH
Q 010405 71 RNDVSWNSILGGL--VRFGSVDDACRVFNQMPK------R--SLVSWVVLISGF--AQNGRPKEAL---------ALFRE 129 (511)
Q Consensus 71 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~--~~~g~~~~A~---------~~~~~ 129 (511)
|+..+-+.|-.-| .+.+++++|..+++++.+ . ++..|..++..- .-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3344444455555 667777777777765421 1 233344443321 1112222222 55555
Q ss_pred HHHCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---ccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 130 MQSLDLEPNS----AILVSLLSACAQLGALDYGNWVYSYIQKKC--IK---LDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 130 m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+.....+.+. ..+......+...|++++|...++++.+.. .+ ....++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 123344556788999999999999998642 11 12457888999999999999999888876
Q ss_pred CC-----CC-----eeehHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010405 201 GD-----KD-----VSAYTSAIFGLAMNGHSIEAFELFENMKSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHS 265 (511)
Q Consensus 201 ~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~ 265 (511)
.+ ++ ..+++.+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...|.+
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43 12 346788999999999999999999988652 1111 134677888899999999999999998
Q ss_pred chhhc---CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCc---hhHHHHHHH
Q 010405 266 MFDVH---GIKPELDHYACMVDLLGRAGLLEEAENFIASM----PM--KPD-NVIWGTLLGACRVHRN---AEMGQRIGN 332 (511)
Q Consensus 266 ~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~ 332 (511)
..+.. +.+....++..+...|.+.|++++|...+++. +. .|. ...+..+...+...++ .++|+..++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 87621 22333677889999999999999999999876 21 232 2345555555777787 777777777
Q ss_pred HHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 333 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 328 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 62 23333456778999999999999999999987754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=100.61 Aligned_cols=129 Identities=9% Similarity=-0.081 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM-KPDNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ .. ..+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 334444444455555555555555555441 1223445555555556666666666655554 11 1245566666666
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...|++++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-09 Score=110.28 Aligned_cols=362 Identities=8% Similarity=0.014 Sum_probs=196.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC---hHHHHHHHccCCC-----CChhHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGE---ILEGLKLFDKMPQ-----RNDVSW 76 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-----~~~~~~ 76 (511)
+.|..+|..++..+.+.+.++.|+.+|+++. +.....|..-+..-.+.|+ ++.+.++|++... |++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3477889999999999999999999999766 4566778888888888888 9999999998864 677777
Q ss_pred HHHHHHHHhcCCH--------HHHHHHHhhCC------CC-ChhHHHHHHHHHH---------HCCChhHHHHHHHHHHH
Q 010405 77 NSILGGLVRFGSV--------DDACRVFNQMP------KR-SLVSWVVLISGFA---------QNGRPKEALALFREMQS 132 (511)
Q Consensus 77 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 132 (511)
..-+.-..+.++. +...++|+... .+ +...|...+.... .+++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7766655554432 33446776532 22 3456776665433 23446667777777764
Q ss_pred CCCCCCHhHHH---HHHHHH----------HhcCCHHHH-----------------------------------------
Q 010405 133 LDLEPNSAILV---SLLSAC----------AQLGALDYG----------------------------------------- 158 (511)
Q Consensus 133 ~~~~p~~~t~~---~ll~~~----------~~~~~~~~a----------------------------------------- 158 (511)
.....-..+|. ...... .....++.|
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21111111221 111000 000011112
Q ss_pred --------------------------HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH-HHHHhcCC--C-Ceeeh
Q 010405 159 --------------------------NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM-QVFHSYGD--K-DVSAY 208 (511)
Q Consensus 159 --------------------------~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~--~-~~~~~ 208 (511)
..+|++++.. .+.+..+|-..+..+...|+.++|. ++|++... | +...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 2233333333 1223444444444445555555664 66655443 2 22334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKG---------ISPD------------SISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
-..+...-+.|+.++|.++|+++.... -.|+ ...|...+....+.|..+.|..+|..+.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555556666666666666665421 0121 1235555555555566666666666665
Q ss_pred hhcCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC---C
Q 010405 268 DVHGIKPELDHYACMVDLLGRAG-LLEEAENFIASM-P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN---H 341 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~ 341 (511)
+..+ .+....|...+..-.+.| +.+.|.++|+.. . ..-+...|...+......|+.+.|..+|++++...|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 5201 112223333333333333 366666666554 1 1124445555555555566666666666666665542 2
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 342 DGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555556666666666666666553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-10 Score=97.74 Aligned_cols=168 Identities=11% Similarity=0.005 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44667778888888999999999988775 255677888888899999999999999987753 33567788888889
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998873 3456778888999999999999999999886 2233 6778888899999999999999
Q ss_pred HHHHHHhhcCCCCchh
Q 010405 329 RIGNMLIESDQNHDGR 344 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~ 344 (511)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9e-11 Score=108.46 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=128.4
Q ss_pred HCCChhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CccHHHHHHHH
Q 010405 116 QNGRPKEALALFREMQS-------LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------CI-KLDSILCAALI 181 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 181 (511)
..|++++|+.+|++..+ ...+....++..+...+...|++++|...++++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44566666665555543 122224566777778888888888888888777654 21 22355677788
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 182 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
..|...|++++|.+.|++. ++++++......+....++..+...+...|++++|..
T Consensus 93 ~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777643 3333332211111123455556666666666666666
Q ss_pred HHHHchhhc-----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhcCc-
Q 010405 262 YFHSMFDVH-----GIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-P---------MKPDN-VIWGTLLGACRVHRN- 323 (511)
Q Consensus 262 ~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~ll~~~~~~g~- 323 (511)
+++++.+.. +..| ....+..+...|.+.|++++|.+.+++. . ..+.. ..|..+.......+.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 666665520 1122 2445666666777777777777666554 0 12222 223333322332222
Q ss_pred -----hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 -----AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 -----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+..+...++......|....++..++.+|...|++++|.+++++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222223222223344456777888888888888888888887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-10 Score=102.78 Aligned_cols=203 Identities=11% Similarity=0.015 Sum_probs=157.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHH
Q 010405 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIF 213 (511)
Q Consensus 137 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 213 (511)
.|+..+......+...|++++|...|+.+++...+++...+..+..+|.+.|++++|++.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 467888899999999999999999999999986546777777799999999999999999998764 34567888999
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC---HhHHHHH
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPD-S-------ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE---LDHYACM 282 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 282 (511)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999875 333 3 4577777888899999999999999986 3554 5677788
Q ss_pred HHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 283 VDLLGRAGLLEEAENFIASM-P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
...|...|+. .++++ . ...+...+.... ....+.+++|+..++++.++.|+++.+...+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 22222 1 112344444433 3345678999999999999999998777666544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-09 Score=104.02 Aligned_cols=231 Identities=11% Similarity=-0.028 Sum_probs=119.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--c-cH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDL-EPN----SAILVSLLSACAQLGALDYGNWVYSYIQKK----CIK--L-DS 174 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 174 (511)
++.+...+...|++++|...+++...... .++ ..++..+...+...|++++|...+++..+. +.+ | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 44444555555555555555555433100 011 122344455555566666666555555432 111 1 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH-
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHSYGD--K------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYI- 244 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~- 244 (511)
.++..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.......++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 3444555566666666666666654321 1 112345555566666777777777666654211111 11111
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHchhhcCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHH-
Q 010405 245 ----AVLSACSHLGWVEKGFYYFHSMFDVHGIKP---ELDHYACMVDLLGRAGLLEEAENFIASM-------PMKPDNV- 309 (511)
Q Consensus 245 ----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~- 309 (511)
..+..+...|+.++|...+..... ....+ ....+..+...+...|++++|.+.+++. +..++..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 122335567777777777777654 11111 1223556667777778877777777654 1111221
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
.+..+..++...|+.++|...++++....
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 44445566777788888888888777743
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-10 Score=101.89 Aligned_cols=189 Identities=11% Similarity=-0.045 Sum_probs=127.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAV 246 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 246 (511)
.|+..+..+...|.+.|++++|.+.|++..+ ++...|..+..++...|++++|+..|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777778888888888888888876543 45556666777788888888888888887764 33 34567777
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPEL-------DHYACMVDLLGRAGLLEEAENFIASM-PMKPD---NVIWGTLL 315 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll 315 (511)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 777888888888888888877622 2223 44667777777778888888887765 55565 33555555
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
..+.. .+...++++..+.+.+...|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 55543 34455666666666554444333 234456679999999888763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-10 Score=116.52 Aligned_cols=159 Identities=14% Similarity=0.005 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.|+++++.. +.+...+..|..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555555555555555555555554432 1134455555555555555555555555555542 22344555555555
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
.+.|++++|++.|++..+ .+..+|+.+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence 555555555555554432 23344555555555555555555555555543 22 2344555555555555555555
Q ss_pred HHHHHch
Q 010405 261 YYFHSMF 267 (511)
Q Consensus 261 ~~~~~~~ 267 (511)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.3e-10 Score=103.97 Aligned_cols=205 Identities=9% Similarity=-0.086 Sum_probs=101.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 111 ISGFAQNGRPKEALALFREMQSL----DLEPN-SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 111 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
...|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+++.++.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 55666677777777666655432 21111 3455666666666666666666666555421 0
Q ss_pred hcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc-CChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCCHHHH
Q 010405 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN-GHSIEAFELFENMKSKGIS-PD----SISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a 259 (511)
..|+...+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111111 12344444455553 5555555555554432100 01 23455566666666777777
Q ss_pred HHHHHHchhhcCCCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCchh
Q 010405 260 FYYFHSMFDVHGIKPEL-----DHYACMVDLLGRAGLLEEAENFIASM-PMKPDNV------IWGTLLGACR--VHRNAE 325 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~ll~~~~--~~g~~~ 325 (511)
...|++..+...-.+.. ..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 76666666521111111 13455666666677777777777665 3333321 2233444443 345566
Q ss_pred HHHHHHHHHhhcCCCC
Q 010405 326 MGQRIGNMLIESDQNH 341 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~ 341 (511)
+|+..|+++..++|..
T Consensus 258 ~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTSSCCCHHH
T ss_pred HHHHHhccCCccHHHH
Confidence 6666666666555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-09 Score=97.46 Aligned_cols=210 Identities=10% Similarity=0.028 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHC------CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSL------DL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------C- 169 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 169 (511)
..+|..+...|...|++++|+..|++..+. +- +....++..+..++...|++++|...+.++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 457888888899999999999988887653 21 224567888889999999999999999888765 1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
.+....++..+...|...|++++|...|++. ++++........+....++..+...
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRA------------------------LEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH------------------------HHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1233567778888888888888888877743 2222222111111123345555555
Q ss_pred HhccCCHHHHHHHHHHchhhc------CCCCC-HhHHHHHHHHHHHc------CCHHHHHHHHHhCC-CCC-CHHHHHHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVH------GIKPE-LDHYACMVDLLGRA------GLLEEAENFIASMP-MKP-DNVIWGTL 314 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l 314 (511)
+...|++++|..+++++.+.. ...+. ...+..+...+... ..+.++...++... ..| ...++..+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 556666666666665554410 11122 12222222222222 22444444455443 223 23466677
Q ss_pred HHHHHhcCchhHHHHHHHHHhhc
Q 010405 315 LGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
...+...|++++|...++++++.
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788888888888888887653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-09 Score=97.58 Aligned_cols=200 Identities=10% Similarity=0.006 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----H
Q 010405 74 VSWNSILGGLVRFGSVDDACRVFNQMPK-----RS----LVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PN----S 139 (511)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~ 139 (511)
..|......|...|++++|...|++..+ .+ ..+|+.+...|.+.|++++|+..|++..+.... .+ .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4677788899999999999999987642 12 358999999999999999999999887652100 01 2
Q ss_pred hHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc
Q 010405 140 AILVSLLSACAQL-GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218 (511)
Q Consensus 140 ~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 218 (511)
.++..+..++... |++++|...+++.++..... ++... ...+|+.+...|.+.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---------------~~~~~-----------~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---------------QSVAL-----------SNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---------------TCHHH-----------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---------------CChHH-----------HHHHHHHHHHHHHHh
Confidence 3445555555553 55555555555554421000 00000 012345555666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH------hHHHHHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDS------ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL------DHYACMVDLL 286 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~ 286 (511)
|++++|+..|++.......... ..|..+..++...|++++|...|++..+ +.|+. ..+..++..+
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHH
Confidence 6666666666666654322211 1445556666677777777777777654 33321 1233444555
Q ss_pred H--HcCCHHHHHHHHHhC
Q 010405 287 G--RAGLLEEAENFIASM 302 (511)
Q Consensus 287 ~--~~g~~~~A~~~~~~~ 302 (511)
. ..+++++|.+.|+.+
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 3 356688888888766
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=94.06 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK-----DVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
+...+++.++.+ +++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 223333334445555555555555555544221 22233444444555555555555555544
Q ss_pred h
Q 010405 233 S 233 (511)
Q Consensus 233 ~ 233 (511)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-07 Score=98.57 Aligned_cols=216 Identities=8% Similarity=-0.041 Sum_probs=163.3
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
+..+|++.+.. .+-+...|...+.-+...|+.++|. .+++..+.. .|.+...|-.++...-+.|++++|.++|+++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556555543 2335566666677777889999996 999999976 45677788889999999999999999999876
Q ss_pred C-------------CC------------eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCC
Q 010405 202 D-------------KD------------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-LGW 255 (511)
Q Consensus 202 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~ 255 (511)
+ |+ ...|...+....+.|..+.|..+|.+..+.-..+....|......-.+ .++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 4 21 235778888888889999999999999876111123334332222223 356
Q ss_pred HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCchhHHHHH
Q 010405 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP----DNVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+.++
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999984 3445667778888888999999999999986 3333 345888899988999999999999
Q ss_pred HHHHhhcCCCCc
Q 010405 331 GNMLIESDQNHD 342 (511)
Q Consensus 331 ~~~~~~~~p~~~ 342 (511)
.+++.+..|+++
T Consensus 564 ~~R~~~~~P~~~ 575 (679)
T 4e6h_A 564 EKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHSTTCC
T ss_pred HHHHHHhCCCCc
Confidence 999999999874
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-08 Score=92.95 Aligned_cols=205 Identities=9% Similarity=-0.026 Sum_probs=132.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---eeehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC-HHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-D---VSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPD-SISY 243 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 243 (511)
.+...+-.+...+.+.|++++|...|+.+.+ | + ..++..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455666667777777777777777777654 2 2 34566667777777777777777777766421 112 2345
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 244 IAVLSACSH--------LGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314 (511)
Q Consensus 244 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 314 (511)
..+..++.. .|++++|...|+++.+.. |+ ......+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 555556666 677777777777776622 22 22222221111111101 1124556
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCceeE
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIYVET----------LKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
...+...|++++|+..++++++..|++ +..+..++.+|... |++++|...+++..+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 777899999999999999999998874 35788899999877 89999999999887632
Q ss_pred EEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHH
Q 010405 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 417 (511)
..++...++...+.++...+.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2355666777666676666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-08 Score=92.50 Aligned_cols=204 Identities=11% Similarity=0.049 Sum_probs=109.1
Q ss_pred HHHHcCChHHHHHHHccCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 010405 51 GYVRNGEILEGLKLFDKMPQRN-DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129 (511)
Q Consensus 51 ~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (511)
-.--.|.+..++.-..++...+ ...-.-+.++|...|+.+... -..|.......+ ..|...+ |+..|++
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~l-a~~~~~~----a~~~l~~ 91 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLY-VQFLDTK----NIEELEN 91 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHH-HHHHTTT----CCHHHHH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHH-HHHhccc----HHHHHHH
Confidence 3344677777776555553322 222223346666666655310 112222233222 2233322 6666776
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----
Q 010405 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD---- 204 (511)
Q Consensus 130 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---- 204 (511)
....+ .++..++..+..++...|++++|.+++.+.+..+. ..+...+..++..|.+.|+.+.|.+.+++|.+.+
T Consensus 92 l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~ 170 (310)
T 3mv2_B 92 LLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV 170 (310)
T ss_dssp TTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc
Confidence 66554 45556666777777777888888877777766543 2355666677777778888888888877765422
Q ss_pred ---eeehHHHHHH--HHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 205 ---VSAYTSAIFG--LAMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 205 ---~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
-.+...+..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 171 ~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 171 SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2333334433 22223 566666666665443 2332222233334555555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-09 Score=95.10 Aligned_cols=202 Identities=11% Similarity=-0.017 Sum_probs=144.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----ee
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGD--KD----VS 206 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~ 206 (511)
+.+...+..+...+...|++++|...|+.+++.. +.+ ...+..+..+|.+.|++++|+..|++..+ |+ ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3466788888899999999999999999999874 223 67888899999999999999999998764 32 23
Q ss_pred ehHHHHHHHHH--------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 207 AYTSAIFGLAM--------NGHSIEAFELFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 207 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
++..+..++.. .|++++|+..|++.... .|+. .....+ ..+..+.. -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~-----~~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRA-----KLAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHH-----HHHH
Confidence 57777888888 99999999999999875 3432 222111 11111111 0012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CchhHHHHHHHHHhhcCCCCc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVH----------RNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3566778888999999999988876 22233 34566666777655 889999999999999999885
Q ss_pred hh---HHHHHHHHHHcCCch
Q 010405 343 GR---YILLSNIYVETLKGE 359 (511)
Q Consensus 343 ~~---~~~l~~~~~~~g~~~ 359 (511)
.+ ...+..++...++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 43 334444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.8e-09 Score=82.99 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHR 322 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 322 (511)
.+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ... .+...|..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3444444455555555555554431 1223444455555555555555555555544 111 24445556666666667
Q ss_pred chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++++|.+.++++.+..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777766666666666777777777777777777766654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-10 Score=92.99 Aligned_cols=138 Identities=6% Similarity=-0.071 Sum_probs=97.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 292 (511)
+...|++++|+..+++.... .|+ ...+..+...|...|++++|++.|++..+ +.| +...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 34455666677666665442 222 33455666777777777777777777776 233 467777788888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHH-HHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 293 EEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQR-IGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 293 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
++|...|++. ...| +...|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4445 46678888888888888876555 4588888999888888888888877775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-08 Score=89.24 Aligned_cols=183 Identities=10% Similarity=-0.026 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe----eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV----SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYIA 245 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ 245 (511)
...+..+...+.+.|++++|+..|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555567778888888888888887764 322 35677778888888888888888888764322111 13333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 010405 246 VLSACSH------------------LGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMPMKP 306 (511)
Q Consensus 246 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 306 (511)
+..++.. .|+.++|...|+.+.+. .|+ ...+.+....- ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence 4444432 34555666666655542 122 11111111000 000000
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD---GRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345668889999999999999999999875 56889999999999999999999999886654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-08 Score=80.90 Aligned_cols=131 Identities=12% Similarity=0.131 Sum_probs=97.0
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 286 (511)
+|..+...+...|++++|+.+|+++...+ +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 35566677777777888888887776643 235566777777778888888888888887762 234466777788888
Q ss_pred HHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 287 GRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 287 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.+.|++++|.+.++++ ... .+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 222 35667778888888888999999988888887774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=113.00 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=105.7
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010405 185 AKCGSIDLAMQVFHSYG--------D---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 253 (511)
...|++++|++.|++.. + .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45667777777766654 2 244556666666777777777777777766542 11445666666667777
Q ss_pred CCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 010405 254 GWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 254 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
|++++|...|+++.+ ..| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777665 223 35566667777777777777 6666665 3333 455666666667777777777777
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
++++.+++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777766677777766655444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-08 Score=93.01 Aligned_cols=174 Identities=7% Similarity=-0.036 Sum_probs=128.1
Q ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC
Q 010405 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271 (511)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 271 (511)
...+.+......+...+..+...+.+.|++++|+..|++..... +-+...+..+...+...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---
Confidence 33344444443344455666777778888888888888887753 22456777788888888999999998888876
Q ss_pred CCCCHhHHH-HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC--chhHH
Q 010405 272 IKPELDHYA-CMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH--DGRYI 346 (511)
Q Consensus 272 ~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 346 (511)
..|+..... .....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+.
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 245543322 2333466777777888887776 3344 56788888899999999999999999999999987 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHH
Q 010405 347 LLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988887643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-08 Score=87.54 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=12.5
Q ss_pred HHHHHHHCCChhHHHHHHHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQS 132 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~ 132 (511)
....+.+.|++++|+..|++..+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555556666655555554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-08 Score=102.51 Aligned_cols=190 Identities=8% Similarity=-0.037 Sum_probs=145.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHc
Q 010405 150 AQLGALDYGNWVYSYIQ--------KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN 218 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 218 (511)
...|++++|.+.+++++ +. .+.+...+..+...|.+.|++++|++.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999988 43 245677888899999999999999999998775 4667888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
|++++|++.|++..+... -+...+..+..++...|++++ ...|+++.+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999987532 256778888899999999999 9999999872 233477899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCc-----hhHHHHHHHHHhhcCCCCchh
Q 010405 299 IASM-PMKPD-NVIWGTLLGACRVHRN-----AEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 299 ~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 344 (511)
|++. ...|+ ...|..+..++...++ .+...+..+.+....+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 56776 4567777777666554 234444444444454544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.9e-08 Score=84.29 Aligned_cols=159 Identities=6% Similarity=-0.145 Sum_probs=100.8
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHchhhcCCCCCHhHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG----WVEKGFYYFHSMFDVHGIKPELDHYAC 281 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 281 (511)
.++..+...|...+++++|+.+|++..+.| +...+..|...|.. + +.++|..+|++..+ . -++..+..
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~~ 90 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHHH
Confidence 334444444444455555555555555543 34455555555555 4 67777777777655 2 24555666
Q ss_pred HHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 282 MVDLLGR----AGLLEEAENFIASM-PMKPD---NVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 282 li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
|...|.. .+++++|.+.|++. ...|+ +..+..|...|.. .++.++|...++++.+. |.++..+..|+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 6666665 66777777777765 33332 5666667666666 67788888888888877 55667788888
Q ss_pred HHHHHc-C-----CchHHHHHHHHHHhCCC
Q 010405 350 NIYVET-L-----KGENAEEVRKTMRKRKI 373 (511)
Q Consensus 350 ~~~~~~-g-----~~~~A~~~~~~m~~~g~ 373 (511)
.+|... | ++++|.+.+++..+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888764 3 78888888887776553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-08 Score=86.04 Aligned_cols=154 Identities=8% Similarity=-0.020 Sum_probs=86.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH-HHHcC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL-LGRAG 290 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g 290 (511)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .|+...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhc
Confidence 334444455555555554443321 112334444444555555555555555555431 1222222111111 11111
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC--chhHHHHHHHHHHcCCchHHHHHHH
Q 010405 291 LLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH--DGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 291 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
...+|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...++
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 222345555544 2334 46677778888888888888888888888888764 4578888888888888888888887
Q ss_pred HHH
Q 010405 367 TMR 369 (511)
Q Consensus 367 ~m~ 369 (511)
+..
T Consensus 169 ~al 171 (176)
T 2r5s_A 169 RQL 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-07 Score=80.70 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=20.3
Q ss_pred HHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010405 50 NGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQM 99 (511)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 99 (511)
..+.+.|++++|+..|++..+ .+...+..+...|.+.|++++|...|++.
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333444444444444444432 22333334444444444444444444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-09 Score=87.11 Aligned_cols=122 Identities=10% Similarity=-0.007 Sum_probs=102.2
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHR 322 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 322 (511)
|...+...|++++|+..+..... ..|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778999999999988765 3443 556778999999999999999999987 4455 6778999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHH-HHHHHh
Q 010405 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV-RKTMRK 370 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 370 (511)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-08 Score=90.27 Aligned_cols=220 Identities=12% Similarity=0.019 Sum_probs=146.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 010405 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196 (511)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 196 (511)
.|++++|.+++++..+.. +.. + +...++++.|...|.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577889999988776531 111 0 01135666666655543 3456667777777777
Q ss_pred HHhcCC-----CC----eeehHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 010405 197 FHSYGD-----KD----VSAYTSAIFGLAMNGHSIEAFELFENMKSKG---ISPD--SISYIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 197 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~~~~~~g~~~~a~~~ 262 (511)
|.+..+ .+ ..+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 665442 11 2357777788888888888888888765421 1121 3567778888888 999999999
Q ss_pred HHHchhhcCCC---C-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCchhHHHHH
Q 010405 263 FHSMFDVHGIK---P-ELDHYACMVDLLGRAGLLEEAENFIASM-P---MKPD----NVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 263 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
|++..+...-. + ...++..+...|.+.|++++|.+.|++. . ..++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887632111 1 1467888899999999999999999876 1 1122 22556666677888999999999
Q ss_pred HHHHhhcCCCCchh-----HHHHHHHHHHcCCchHHHHH
Q 010405 331 GNMLIESDQNHDGR-----YILLSNIYVETLKGENAEEV 364 (511)
Q Consensus 331 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 364 (511)
+++.+ ..|....+ ...++.+| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88865432 33455555 56776666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-07 Score=83.97 Aligned_cols=188 Identities=8% Similarity=-0.033 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCC
Q 010405 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220 (511)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 220 (511)
.+......+...|++++|...|+++++.. |.+...+... ........ ....++.+...|...|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~~~~----------~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKNSEI----------SSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTTSHH----------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcchhhh----------hHHHHHHHHHHHHHCCC
Confidence 34445556777888888888888887763 1122222220 00000000 01122346777888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCC--HHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGL--LEEAEN 297 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~ 297 (511)
+++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ +.| +...+..+...|...|. .+.+..
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888887753 22566778888888888999999998888887 234 46778888887766654 345566
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 298 FIASMPMKPDNV--IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 298 ~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
.++... .|+.. .+..+..++...|++++|+..+++++++.|++ .....|..
T Consensus 146 ~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 666553 34433 34444555667788999999999999999864 33334433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=83.41 Aligned_cols=168 Identities=10% Similarity=-0.001 Sum_probs=110.5
Q ss_pred HHHHHhhCCC-CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 010405 92 ACRVFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG----ALDYGNWVYSYIQ 166 (511)
Q Consensus 92 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 166 (511)
|.+.|++..+ .++.++..|...|...+++++|+..|++..+.| +...+..|...|.. + +.++|...+++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544432 456677777777777777777777777777654 55666666666666 5 7777777777776
Q ss_pred HcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----eeehHHHHHHHHH----cCChHHHHHHHHHHHh
Q 010405 167 KKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGDKD-----VSAYTSAIFGLAM----NGHSIEAFELFENMKS 233 (511)
Q Consensus 167 ~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 233 (511)
+.| +...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .++.++|+.+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566667777766 677777777777766532 4667777777776 6677777777777766
Q ss_pred CCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHchh
Q 010405 234 KGISPDSISYIAVLSACSHL-G-----WVEKGFYYFHSMFD 268 (511)
Q Consensus 234 ~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~~~~ 268 (511)
. .++...+..|...|... | +.++|..+|+...+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 22334455555555432 2 67777777777766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.2e-08 Score=100.08 Aligned_cols=160 Identities=11% Similarity=-0.035 Sum_probs=123.7
Q ss_pred cCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 187 CGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998875 356678999999999999999999999998863 225778888999999999999999999
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CchhHHHHHHHHHhhcC
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVH---RNAEMGQRIGNMLIESD 338 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 338 (511)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999872 2345788999999999999999999999887 3344 567888888999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 010405 339 QNHDGRYILLS 349 (511)
Q Consensus 339 p~~~~~~~~l~ 349 (511)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-08 Score=81.99 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=89.7
Q ss_pred CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 272 IKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 272 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 4554 567888889999999999999999987 4445 677899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCC
Q 010405 349 SNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 349 ~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+.+|...|++++|.+.+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999988643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=87.67 Aligned_cols=164 Identities=7% Similarity=-0.005 Sum_probs=102.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehH-HHH
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYT-SAI 212 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li 212 (511)
+.+...+..+...+...|++++|...++++++.. |.+...+..+..+|.+.|++++|...|+++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345566667777777888888888888877764 44566777778888888888888888887765 3322111 122
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (511)
..+...++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23455666666777777666542 22455666666667777777777777777666221111244566666666666666
Q ss_pred HHHHHHHHh
Q 010405 293 EEAENFIAS 301 (511)
Q Consensus 293 ~~A~~~~~~ 301 (511)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 666655543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-07 Score=83.44 Aligned_cols=219 Identities=9% Similarity=0.035 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc---CC
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLG--ALDYGNWVYSYIQKKCIKLDSILCAALIDMY----AKC---GS 189 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g~ 189 (511)
..++|++++..++..+ +-+...|+.-..++...+ +++++++.++.++..+ |-+..+|+.-...+ .+. ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3356777777776643 224455666666666666 7777777777776654 33445555444433 333 45
Q ss_pred HHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 190 IDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSI--EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 190 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
+++++++++.+.+ ++..+|+--.-.+.+.|.++ ++++.+.++.+.... |...|+.-.......+..
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~-------- 196 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL-------- 196 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG--------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc--------
Confidence 5555555555443 23344444444444455544 555555555544322 333443333333333320
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH-HHHHHHHHhhcC---
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM-GQRIGNMLIESD--- 338 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--- 338 (511)
.+ ...++++++.++++ ...| |...|+.+-..+...|+... ...+.+++.+++
T Consensus 197 ---------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 197 ---------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp ---------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred ---------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 00 00044555554443 2222 44555555555544444222 334444444433
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555555666666666666666666665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-06 Score=79.69 Aligned_cols=226 Identities=10% Similarity=-0.009 Sum_probs=146.7
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCC--ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH----Hhc
Q 010405 82 GLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNG--RPKEALALFREMQSLDLEPNSAILVSLLSAC----AQL 152 (511)
Q Consensus 82 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~----~~~ 152 (511)
...+....++|+.+++++.. | +..+|+.--..+...| ++++++++++.+.... +-+..+|+.-...+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 33444455789999998864 3 4567999888888888 9999999999998864 33566677665555 555
Q ss_pred ---CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH--HHHHHHHhcCC---CCeeehHHHHHHHHHcCC----
Q 010405 153 ---GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID--LAMQVFHSYGD---KDVSAYTSAIFGLAMNGH---- 220 (511)
Q Consensus 153 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---- 220 (511)
++++++..+++.+.+.. +-+-.+|+--.-.+.+.|+++ ++++.++++.+ .|..+|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 78999999999999875 557888888888888899988 99999998876 455677766555555544
Q ss_pred --hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHH-HHH
Q 010405 221 --SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE-AEN 297 (511)
Q Consensus 221 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~ 297 (511)
++++++.++++....+. |...|+ .+...+.+.|+..+ +..
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~------------------------------------y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWN------------------------------------YLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHH------------------------------------HHHHHHHHTTCCGGGGHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHH------------------------------------HHHHHHHhcCCChHHHHH
Confidence 44555555555443221 344444 44444444443222 222
Q ss_pred HHHhC-CC----CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh-cCCCCchhHH
Q 010405 298 FIASM-PM----KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNHDGRYI 346 (511)
Q Consensus 298 ~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~ 346 (511)
+..+. .. ..++..+..+...+.+.|+.++|.++++.+.+ .+|.....|.
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHH
Confidence 33332 11 12445555555555566666666666666665 5665544443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-08 Score=98.63 Aligned_cols=147 Identities=10% Similarity=-0.069 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELF 228 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 228 (511)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 44678889999999999999999999998765 35667888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 010405 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA---GLLEEAENFIASM 302 (511)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 302 (511)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988753 225678888889999999999999999999872 233577888899999999 9999999998876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-07 Score=79.84 Aligned_cols=125 Identities=10% Similarity=-0.145 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 155 (511)
+..+...+...|++++|...|++...++...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34445555566666666666666655556666666666666666666666666665542 33455566666666666666
Q ss_pred HHHHHHHHHHHHcCCCc---------------cHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 156 DYGNWVYSYIQKKCIKL---------------DSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 156 ~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
++|.+.++.+.+..... ...++..+..+|.+.|++++|.+.|+...
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666666542110 11344445555555555555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-07 Score=79.11 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=35.5
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+...+...|++++|...|+.+.+.+.-.|. ...+..+..+|.+.|++++|.+.++.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 445566677777777777777663211111 245666777777777777777777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.8e-08 Score=77.10 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666666666666666654 2233 455666666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHHh
Q 010405 355 TLKGENAEEVRKTMRK 370 (511)
Q Consensus 355 ~g~~~~A~~~~~~m~~ 370 (511)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-07 Score=80.06 Aligned_cols=121 Identities=8% Similarity=-0.091 Sum_probs=73.1
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 4444555566666666555442 245555566666666666666666666554 2222 44556666666666666
Q ss_pred hhHHHHHHHHHhhcCCCCc----------------hhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 324 AEMGQRIGNMLIESDQNHD----------------GRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+++|...++++.+..|.+. .++..++.+|...|++++|.+.+++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666666665554 66667777777777777777777766653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.2e-08 Score=79.45 Aligned_cols=100 Identities=10% Similarity=-0.012 Sum_probs=86.4
Q ss_pred CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 272 IKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 272 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 3566777888899999999999999886 3344 677888888899999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 010405 349 SNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 349 ~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+.+|...|++++|.+.+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-06 Score=79.07 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=115.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHH
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKG-ISPDSI----SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYAC 281 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 281 (511)
.+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|..+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 2334666677778899999999888762222222 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHH
Q 010405 282 MVDLLGRAGLLEEAENFIASMP-------MK-PD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYI 346 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 346 (511)
+...|...|++++|...|+++- .. +. ..++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999888887651 11 22 2367788888999999999999999999854322 56888
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHh
Q 010405 347 LLSNIYVETLK-GENAEEVRKTMRK 370 (511)
Q Consensus 347 ~l~~~~~~~g~-~~~A~~~~~~m~~ 370 (511)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999998887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.5e-07 Score=83.86 Aligned_cols=162 Identities=12% Similarity=-0.013 Sum_probs=115.9
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHchhhcCC--CCC--HhH
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-----ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI--KPE--LDH 278 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~ 278 (511)
+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+.+..+...- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677788888888888777664322111 12334555667788999999998887652111 111 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC------Cch
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM----PMKPD-----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN------HDG 343 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 343 (511)
++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..++++++..+. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888899999999999999888765 11222 257788888899999999999999999885332 146
Q ss_pred hHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010405 344 RYILLSNIYVETLKGENA-EEVRKTMR 369 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A-~~~~~~m~ 369 (511)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788999999999999999 77677654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=74.61 Aligned_cols=114 Identities=10% Similarity=-0.048 Sum_probs=93.2
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 010405 236 ISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWG 312 (511)
Q Consensus 236 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 312 (511)
+.|+ ...+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4454 346677788888999999999999988872 2345788888999999999999999999886 3444 577888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.+..++...|++++|++.|+++++++|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999998887776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-08 Score=90.72 Aligned_cols=193 Identities=7% Similarity=-0.053 Sum_probs=96.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 218 (511)
...+..+...+...|++++|...++.+++.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~------------------- 63 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRR------------------- 63 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------
Confidence 4445555555555666666666665555542 22444555555555555555555555554
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAEN 297 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~ 297 (511)
..+.. +.+...+..+..++...|++++|...|....+. .|+. ..+...+....+.........
T Consensus 64 ------------al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
T 2c2l_A 64 ------------ALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS 127 (281)
T ss_dssp ------------HTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred ------------HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH
Confidence 43321 112334444455555555555555555554431 1110 001111111111111111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHh
Q 010405 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET-LKGENAEEVRKTMRK 370 (511)
Q Consensus 298 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 370 (511)
.......++......+ ..+. .|+.++|.+.++++.+.+|++......+...+.+. +.+++|.++|....+
T Consensus 128 -~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 128 -IEERRIHQESELHSYL-TRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHTCCCCCCHHHHHH-HHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHhhhHHHHHHH-HHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1112222233332222 3222 57888888888888888887766666777666666 678888888887765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.9e-07 Score=75.28 Aligned_cols=128 Identities=8% Similarity=-0.090 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
..+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777788888888888887762 2335677788888888888888888888776 2333 567788888889
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHH--HHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILL--SNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...|++++|...++++.+..|.+...+..+ +..+...|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999888777544 4448888999999999876643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.7e-07 Score=82.28 Aligned_cols=192 Identities=9% Similarity=-0.115 Sum_probs=119.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHH-------HHHHHhcCCHHHHHHHHHhcCC--C-Cee--------------
Q 010405 151 QLGALDYGNWVYSYIQKKCIKLDSILCAAL-------IDMYAKCGSIDLAMQVFHSYGD--K-DVS-------------- 206 (511)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~y~~~g~~~~A~~~~~~~~~--~-~~~-------------- 206 (511)
..++...|.+.|.++.+.. |.....|+.+ ...+.+.++..++...+.+-.. | ...
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566666777776666653 3344555555 3444444444555555544433 1 000
Q ss_pred -------ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC--Hh
Q 010405 207 -------AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE--LD 277 (511)
Q Consensus 207 -------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 277 (511)
.+-.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|....+ .. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 0123456677788888888888777654 34443444455567788888888888875544 11 121 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASMP---MKPD--NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
.+..+..++.+.|++++|++.|++.. ..|. ...+.....++...|+.++|...|+++...+|+ +..+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 56677888888888888888888762 1143 235556667788888888888888888888886 5554444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7.5e-07 Score=70.34 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|..++.++.+. .+.+...+..+...+.+.|++++|...++++ ... .+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666677777778888888888877762 2334667777888888888888888888776 222 356678888888
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999988888888888877776544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-05 Score=78.22 Aligned_cols=347 Identities=9% Similarity=-0.024 Sum_probs=212.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCC-hHHHHHHHccCCC------CChhHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGE-ILEGLKLFDKMPQ------RNDVSWNSIL 80 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~------~~~~~~~~li 80 (511)
-..+|...+..|-. |+++.|..+|++.. .|++..|...+.-..+.+. .+....+|+.... .+...|...+
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34567777777765 89999999999754 4799999999888777663 3445556665432 3567777777
Q ss_pred HHHH----hcCCHHHHHHHHhhCCC-C--Ch-hHHHHHHHHHH-------------HCCChhHHHHHHHHHHHCCCCCCH
Q 010405 81 GGLV----RFGSVDDACRVFNQMPK-R--SL-VSWVVLISGFA-------------QNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 81 ~~~~----~~g~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
..+. ..++++.+.++|++... | +. ..|......-. ..+.+..|..+++.+...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 6554 34678899999998754 2 21 12222211100 112233444445444321000133
Q ss_pred hHHHHHHHHHHhc--CC-----HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHH
Q 010405 140 AILVSLLSACAQL--GA-----LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212 (511)
Q Consensus 140 ~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 212 (511)
..|...+.--... +- .+.+..+|++++... +.+..+|...+..+.+.|+.+.|..+|++.... +.+... -
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l-~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL-S 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH-H
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH-H
Confidence 3555544442221 11 345678899988864 556788888888888999999999999876543 222221 1
Q ss_pred HHHHHcCChHHHHHHHHHHHhC---C------CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHH
Q 010405 213 FGLAMNGHSIEAFELFENMKSK---G------ISP---DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~---g------~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 280 (511)
..|+...+.++. ++.+.+. . ..+ ....|...+....+.+..+.|..+|..+ +..+ .+...|.
T Consensus 250 ~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i 323 (493)
T 2uy1_A 250 LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFI 323 (493)
T ss_dssp HHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHH
T ss_pred HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHH
Confidence 134333222222 2222211 0 011 1245666666666778899999999998 4122 3444554
Q ss_pred HHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 281 CMVDLLGRAG-LLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 281 ~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
..+..-.+.+ +.+.|..+|+.. ..-| ++..|...+.-....|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 4333333344 699999999876 1113 34556777777788899999999999973 345677777777778899
Q ss_pred chHHHHHHHHHHh
Q 010405 358 GENAEEVRKTMRK 370 (511)
Q Consensus 358 ~~~A~~~~~~m~~ 370 (511)
.+.+.++++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-06 Score=86.25 Aligned_cols=321 Identities=11% Similarity=-0.057 Sum_probs=194.8
Q ss_pred hcC-ChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcCC-HHHHHHHHhh
Q 010405 23 VCG-RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGS-VDDACRVFNQ 98 (511)
Q Consensus 23 ~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~ 98 (511)
+.| +++.|+.+|+... ..+-. |+++.+.++|++... |++..|...+.-..+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 346 3777888877643 11111 889999999999876 899999988887777663 3455666665
Q ss_pred CC------CCChhHHHHHHHHHH----HCCChhHHHHHHHHHHHCCCCCC-H-hHHHHHHHHHHh--------------c
Q 010405 99 MP------KRSLVSWVVLISGFA----QNGRPKEALALFREMQSLDLEPN-S-AILVSLLSACAQ--------------L 152 (511)
Q Consensus 99 ~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~-~t~~~ll~~~~~--------------~ 152 (511)
.. ..+...|...+..+. .+|+.+.+..+|++.+.. ++. . ..|..... +.. .
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHh
Confidence 43 235577888776654 346788899999999873 222 1 12221111 111 1
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--C-----HHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChH
Q 010405 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG--S-----IDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSI 222 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 222 (511)
+.+..|..+++.+...--..+...|...++.-...+ - .+.+..+|+++.. .+...|...+.-+.+.|+.+
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 123334444444433200113345665555433221 1 3456678887664 34566888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc---C-----CCC---CHhHHHHHHHHHHHcCC
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH---G-----IKP---ELDHYACMVDLLGRAGL 291 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-----~~p---~~~~~~~li~~~~~~g~ 291 (511)
+|..+|++.... |+...+.. +|+.....++. ++.+.+.. . ..+ ....|...+..+.+.+.
T Consensus 231 ~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999999886 55443222 12221111111 22222211 0 001 13456677777778889
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 292 LEEAENFIASMPMKP--DNVIWGTLLGA-CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p--~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
++.|..+|++.. .| +...|...... +...++.+.|..+|+.+.+..|+++..+...++...+.|+.+.|..++++.
T Consensus 302 ~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 302 LELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999882 23 33444432222 222347999999999999988888777777888888999999999999886
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-07 Score=86.72 Aligned_cols=195 Identities=7% Similarity=-0.060 Sum_probs=148.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
.|++++|.+++++..+... .. +.+ .+++++|...|+.. ...|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 5678889999988876521 11 122 58899999988764 5678899999999999998
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhc---CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 010405 231 MKSK----GISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVH---GIKP-ELDHYACMVDLLGRAGLLEEAENFIAS 301 (511)
Q Consensus 231 m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 301 (511)
.... +-.+. ..+|..+...|...|++++|...|++..+.. |-.+ ...++..+...|.+ |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3478888889999999999999999887632 1111 14578888899988 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 302 M-PMK---PD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD------GRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 302 ~-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
. .+. .+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 35677888889999999999999999999765432 3666778888899999999999998
Q ss_pred HH
Q 010405 368 MR 369 (511)
Q Consensus 368 m~ 369 (511)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=5.7e-07 Score=73.65 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=83.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 456667788888999999999999886 3344 67788888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010405 354 ETLKGENAEEVRKTMRK 370 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~ 370 (511)
..|++++|.+.+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.9e-07 Score=70.88 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666677777888888888888887762 2335677788888888888888888888776 2333 56678888888
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 359 (511)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988888889999998888753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.3e-07 Score=79.09 Aligned_cols=115 Identities=16% Similarity=0.025 Sum_probs=56.6
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHH
Q 010405 85 RFGSVDDACR---VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL----DLE-PNSAILVSLLSACAQLGALD 156 (511)
Q Consensus 85 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~~~~~ 156 (511)
..|++++|.+ ++..-+.....+++.+...+...|++++|+..|++.... +.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666666 443322233445666666666666666666666555431 111 12344555555566666666
Q ss_pred HHHHHHHHHHHc----CCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 157 YGNWVYSYIQKK----CIK--LDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 157 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
+|...+++..+. +-. ....++..+...|...|++++|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666665555442 101 1123444555555555555555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-07 Score=71.38 Aligned_cols=116 Identities=6% Similarity=-0.034 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...|+...+ -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455555566666666666666666654 11224555666666666666666666666654 2223 45667777777
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
+...|++++|...++++.+..|.+...+..+..++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7888888888888888888888777777777777776653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-07 Score=86.82 Aligned_cols=126 Identities=6% Similarity=-0.087 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----------------HhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----------------LDHYACMVDLLGRAGLLEEAENFIASM-P 303 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 303 (511)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|...+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555666666666666666666552 222 468888999999999999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010405 304 MKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA-EEVRKTMR 369 (511)
Q Consensus 304 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 369 (511)
..| +...|..+..++...|++++|+..|++++++.|++..++..+..++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 6778889999999999999999999999999999999999999999999999999 44566554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=81.30 Aligned_cols=122 Identities=9% Similarity=-0.058 Sum_probs=72.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---Ch------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HhHHHH
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPKR---SL------VSWVVLISGFAQNGRPKEALALFREMQSLDLE-PN----SAILVS 144 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ 144 (511)
.+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355667777777777777765431 11 12334556666667777777777777663222 22 225677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKK-----CIKL-DSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+..+|...|++++|...++++++. +..+ ...++..+...|.+.|++++|.+.+++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777777777776641 1111 1235566666667777777666666543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.8e-05 Score=71.41 Aligned_cols=180 Identities=7% Similarity=-0.004 Sum_probs=116.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG-ALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
++.+-....+.+..++|++++.++...+ +-+..+|+.--.++...+ .++++.+.++.+++.. +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333334444555678888888888753 335566777777777777 5888888888888775 446777777777776
Q ss_pred hc-C-CHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 186 KC-G-SIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSI--------EAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 186 ~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
+. + ++++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.+.++.+..+. |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 66 6 778888888888764 4445555544554445454 788888888776433 66666666666666
Q ss_pred cCC-------HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 253 LGW-------VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 253 ~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
.+. ++++++.++++... -+-|...|+.+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 654 56677777666651 23345556655555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.2e-07 Score=77.49 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=89.2
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCch--h
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA-CRVHRNA--E 325 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 325 (511)
...|++++|...+....+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4456777777777777652 2335677778888888888888888888776 2223 56677777777 6788888 9
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+|...++++++..|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999888888899999999999999999998887644
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=80.60 Aligned_cols=97 Identities=8% Similarity=-0.152 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567788888889999999999998887753 3377888888888999999999999999888764 446677778888
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 010405 183 MYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~ 201 (511)
+|...|++++|.+.|++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 8888888888887777543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.7e-07 Score=80.22 Aligned_cols=178 Identities=10% Similarity=-0.035 Sum_probs=125.4
Q ss_pred hcCChHHHHHHHhcCC---CCChhHHHHH-------HHHHHHcCChHHHHHHHccCCC--C-------C-----------
Q 010405 23 VCGRVRDARWVFDESD---DLDVVSWNSM-------INGYVRNGEILEGLKLFDKMPQ--R-------N----------- 72 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~--~-------~----------- 72 (511)
..++.+.|++.|.+.. +.....|+.+ ...+.+.++..+++..+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 5789999999999765 4467789888 5667776667777776666654 1 1
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHH
Q 010405 73 ----DVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVS 144 (511)
Q Consensus 73 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ 144 (511)
...+-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 11234466778889999999999998864 433366677778889999999999997654431 121 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLD--SILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
+..++...|++++|+..|++.......|. ......+..++.+.|+.++|...|+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888999999988888875433232 3355566667777777777777777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=69.96 Aligned_cols=96 Identities=16% Similarity=-0.001 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777888888888888888776 3334 56788888888889999999999999999999998889999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010405 354 ETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~ 371 (511)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999887753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-06 Score=70.90 Aligned_cols=94 Identities=9% Similarity=-0.028 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+.. +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666666666666666666665542 2345555666666666666666666666665553 33444555555555
Q ss_pred HhcCCHHHHHHHHHhc
Q 010405 185 AKCGSIDLAMQVFHSY 200 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~ 200 (511)
...|++++|.+.|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALRDYETV 107 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 5555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.8e-07 Score=77.06 Aligned_cols=127 Identities=14% Similarity=-0.004 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC--
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMPK-------R--SLVSWVVLISGFAQNGRPKEALALFREMQSL----DLEP-- 137 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-- 137 (511)
..++..+...|...|++++|...|++..+ + ...+++.+...|...|++++|+..|++.... +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34444555555555555555555544321 1 2346777888888888888888888776542 2111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCcc--HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLD--SILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
....+..+...+...|++++|...+++..+.. -.+. ..++..+...|...|++++|.+.|++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 23457777888888999999998888876531 1111 23456677778888888888777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=68.08 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC--CchhHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN--HDGRYILLSNI 351 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 351 (511)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666677777777777777777665 2223 5567777777788888888888888888888887 77788888888
Q ss_pred HHHc-CCchHHHHHHHHHHhCCC
Q 010405 352 YVET-LKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 352 ~~~~-g~~~~A~~~~~~m~~~g~ 373 (511)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 8888 888888888887776443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-06 Score=77.08 Aligned_cols=93 Identities=10% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---cc--H
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNS------AILVSLLSACAQLGALDYGNWVYSYIQKKCIK---LD--S 174 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 174 (511)
.+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|...+.++.+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566666777777777777666554211 11 11223334444555666666665555542111 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
.+++.+...|...|++++|...|++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555555555555555555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-05 Score=75.43 Aligned_cols=214 Identities=10% Similarity=0.084 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCeeehHHHHHHHHHc-C-ChHHHHH
Q 010405 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG-SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN-G-HSIEAFE 226 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~ 226 (511)
...++|.++.+.++..+ +-+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568999999999885 446778888888888888 59999999998875 3555677777777766 7 8999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC-------
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVE--------KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL------- 291 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------- 291 (511)
++.++.+...+ |...|..-.-.+.+.|..+ ++++.++++.+. -+-|...|+....++.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999876433 6666665555555555555 899999999872 23467778888888888776
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch--------------------hHHHHHHHHHhhcC------CCCch
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNA--------------------EMGQRIGNMLIESD------QNHDG 343 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 343 (511)
++++++.++++ ...| |...|+.+-..+...|+. .....+...+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 78888888776 3344 777888877777766654 22223332222222 35566
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 344 RYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...|+++|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778999999999999999999999864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=8.3e-07 Score=70.43 Aligned_cols=95 Identities=11% Similarity=-0.064 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999887 3445 6778888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 010405 356 LKGENAEEVRKTMRKRK 372 (511)
Q Consensus 356 g~~~~A~~~~~~m~~~g 372 (511)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.1e-06 Score=68.35 Aligned_cols=98 Identities=12% Similarity=-0.031 Sum_probs=82.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++..|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677788888888888888888888776 3334 567888888888999999999999999999999998999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010405 352 YVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~ 371 (511)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999887753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-05 Score=71.84 Aligned_cols=229 Identities=10% Similarity=0.038 Sum_probs=126.2
Q ss_pred HHCCChh-HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 115 AQNGRPK-EALALFREMQSLDLEPNSAILVSLLSACAQLGA----------LDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 115 ~~~g~~~-~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
.+.|.++ +|++++..+...+ +-+...|+.--.++...+. ++++..+++.++... |-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455554 6777777777643 2233444443333333222 566777777777654 4466677766666
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----
Q 010405 184 YAKCG--SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHL---- 253 (511)
Q Consensus 184 y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---- 253 (511)
+.+.| .+++++++++.+.+ +|..+|+--.-.+...|. ++++++.+.++....+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 66666 37777777777664 455566666666666666 47777777777765433 555555444443332
Q ss_pred ----------CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHHHH
Q 010405 254 ----------GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA-----------GLLEEAENFIASM-PMKPDNVIW 311 (511)
Q Consensus 254 ----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~ 311 (511)
+.++++++.+...... -+-|...|+-+-..+.+. +.++++++.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 3456666666666651 223345555444444443 3455666666555 334443 23
Q ss_pred HHHHHH-----HHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 312 GTLLGA-----CRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 312 ~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
..+-.+ ....|..++....+.++.+++|....-|..+.
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 221111 12345555666666666666666555544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-07 Score=74.22 Aligned_cols=103 Identities=8% Similarity=-0.138 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666777788889999999999888762 2335777888888899999999999988876 3334 55677888888
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
+...|++++|+..+++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999998877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.9e-06 Score=65.00 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 152 (511)
+..+...|...|++++|...|+++.+ .+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33334444444444444444443321 123344444444555555555555554444332 22344444444444455
Q ss_pred CCHHHHHHHHHHHHHc
Q 010405 153 GALDYGNWVYSYIQKK 168 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~ 168 (511)
|++++|...++.+.+.
T Consensus 91 ~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 91 GDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 5555555555444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.9e-06 Score=67.91 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=88.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++.+..|.++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888999999999999999999987 4455 677888889999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010405 352 YVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~ 371 (511)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-06 Score=69.12 Aligned_cols=91 Identities=16% Similarity=0.048 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
.|..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+++++.. |.++..+..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444444444555544444444432 2234444444444444444444444444444432 223333444444444
Q ss_pred hcCCHHHHHHHHH
Q 010405 186 KCGSIDLAMQVFH 198 (511)
Q Consensus 186 ~~g~~~~A~~~~~ 198 (511)
+.|++++|++.|+
T Consensus 116 ~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 116 RLKAPLKAKECFE 128 (151)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=71.54 Aligned_cols=95 Identities=9% Similarity=0.022 Sum_probs=57.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666554 2223 44555666666666666666666666666666666666666666666
Q ss_pred HcCCchHHHHHHHHHHh
Q 010405 354 ETLKGENAEEVRKTMRK 370 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~ 370 (511)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.4e-06 Score=64.10 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=61.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACR 319 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 319 (511)
.+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555555566666666666665541 1223455555666666666666666666554 2222 3455666666666
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
..|++++|...++++.+..|.++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666777777776666666666555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=73.21 Aligned_cols=168 Identities=5% Similarity=-0.143 Sum_probs=98.2
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
.....|+++++.+.|+.-.+ .....|..+...+...|++++|+..|++..... |+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHH
Confidence 33444555555555543222 123345556666666677777777776666532 111100000 00000
Q ss_pred HHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
.. ......+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|...+++++++
T Consensus 83 -------~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 -------KK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -------HH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 00 001356777888888899999998888876 3334 6678888888899999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHH-HHHHHHHhC
Q 010405 338 DQNHDGRYILLSNIYVETLKGENAE-EVRKTMRKR 371 (511)
Q Consensus 338 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 371 (511)
.|.++.++..+..++...++.+++. ..++.|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888887777 455555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.7e-06 Score=64.86 Aligned_cols=98 Identities=10% Similarity=0.075 Sum_probs=87.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556778889999999999999999987 3334 6778888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhCC
Q 010405 353 VETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~g 372 (511)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=69.28 Aligned_cols=94 Identities=6% Similarity=-0.060 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc-------hhHHH
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD-------GRYIL 347 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 347 (511)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777777777777777777765 3344 456777777778888888888888888887766543 25666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010405 348 LSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777888888888888876654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.6e-06 Score=67.62 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445555566666666666666666554 34454 3455555566666666666666666666666666666666666
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010405 351 IYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=6.5e-06 Score=65.37 Aligned_cols=93 Identities=9% Similarity=-0.073 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+....+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344455555555555555555555554432 2244445555555555555555555555555442 22344444444445
Q ss_pred HhcCCHHHHHHHHHh
Q 010405 185 AKCGSIDLAMQVFHS 199 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~ 199 (511)
.+.|++++|.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH
Confidence 555555544444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-06 Score=66.39 Aligned_cols=110 Identities=8% Similarity=-0.134 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
..+..+...+...|++++|...|.+..+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777662 2334667777777788888888888777765 3334 466777777888
Q ss_pred HhcCchhHHHHHHHHHhhcC------CCCchhHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESD------QNHDGRYILLSNIY 352 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 352 (511)
...|++++|...++++.++. |.+......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888877 76665555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.9e-06 Score=71.35 Aligned_cols=127 Identities=7% Similarity=0.073 Sum_probs=97.3
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH-HHHcCCH--
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL-LGRAGLL-- 292 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 292 (511)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888877653 2356788888888999999999999999988732 2356777788888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 293 EEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 293 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
++|...+++. ...| +...|..+...+...|++++|...++++.+..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999876 3344 567788888889999999999999999999999875443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-06 Score=69.20 Aligned_cols=105 Identities=9% Similarity=-0.127 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
..+..+...+...|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555666778888888888888888762 2335677888888888889999988888876 3334 455777788888
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
...|++++|...++++++..|+++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999988877655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.3e-06 Score=69.12 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLG 316 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 316 (511)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777888888888888888888772 2335778888889999999999999998876 3344 5778888999
Q ss_pred HHHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
++...|++++|...+++++++.|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887665443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.8e-05 Score=69.63 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=155.7
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CCeeehHHHHHHH
Q 010405 150 AQLGAL-DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS----------IDLAMQVFHSYGD---KDVSAYTSAIFGL 215 (511)
Q Consensus 150 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 215 (511)
.+.|.+ ++|.+..+.++..+ |-+..+|+.--......|. +++++.+++.+.. ++..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344554 47899999999875 3356667765555544443 6788888887764 4667788877777
Q ss_pred HHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc---
Q 010405 216 AMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW-VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA--- 289 (511)
Q Consensus 216 ~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 289 (511)
...| .+++++.++.++.+...+ |...|+.-.-.+...|. .+++++.+..+.+. -+-|...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 7877 489999999999987543 67777766666777787 68999999999872 244566777776666655
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CchhHHHHHHHHHhhcCCCCchhH
Q 010405 290 -----------GLLEEAENFIASM-PMKP-DNVIWGTLLGACRVH-----------RNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 290 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
+.++++++.+... ...| |...|+-+-..+... +.++++++.++++.++.|++...+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4588899888876 3344 777887666555544 457899999999999999886555
Q ss_pred HHHHHHH---HHcCCchHHHHHHHHHHh
Q 010405 346 ILLSNIY---VETLKGENAEEVRKTMRK 370 (511)
Q Consensus 346 ~~l~~~~---~~~g~~~~A~~~~~~m~~ 370 (511)
..++... ...|..+++...+.++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4444322 235677788888888876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=65.62 Aligned_cols=111 Identities=7% Similarity=-0.157 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWG 312 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 312 (511)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445666667777777888888888877765 3454 566777788888888888888888765 3334 566777
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
.+..++...|++++|...++++.+..|++...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7888888889999999999999998888876666655543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.3e-06 Score=77.83 Aligned_cols=95 Identities=13% Similarity=-0.026 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--------------SAILVSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
...|..+...|.+.|++++|+..|++..+...... ..+|..+..++...|++++|...++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566666667777777777777766665421111 2444444445555555555555555554442
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
+.+...+..+..+|...|++++|+..|++
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22344444444444444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-06 Score=75.06 Aligned_cols=120 Identities=11% Similarity=-0.035 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC--------------HhH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PN--------------SAI 141 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~t 141 (511)
+......|+++.|.+.++.-.+. ....+..+...+.+.|++++|+..|++....... |+ ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33344445555555555433221 2345666666677777777777777766653211 10 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+..+..++...|++++|...++.+++.. +.+...+..+..+|...|++++|.+.|++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4445555555555555555555555442 223444444555555555555555544443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-05 Score=77.07 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=30.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 146 LSACAQLGALDYGNWVYSYIQKKCIKLD----------------SILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 146 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
...+...|++++|.+.+..+++...... ...+..|+..|.+.|++++|.+.+..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455667777777777777776432111 012344555555555555555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.20 E-value=6.5e-06 Score=82.18 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=40.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
.|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555554332 233444455555555555555555555554432 11233444444445555555555
Q ss_pred HHHHHHchh
Q 010405 260 FYYFHSMFD 268 (511)
Q Consensus 260 ~~~~~~~~~ 268 (511)
.+.|++..+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=61.81 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP---DNVIWGTLL 315 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll 315 (511)
...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 344555666667777777777777777652 2234566777777788888888888877765 3333 466777788
Q ss_pred HHHHhc-CchhHHHHHHHHHhhcCCCCc
Q 010405 316 GACRVH-RNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 316 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 342 (511)
..+... |++++|.+.++++....|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888888888888888877653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=6.9e-06 Score=67.43 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhc-------CCCCchhH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIES-------DQNHDGRY----ILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|+..+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888889999999999988888 99998899 9999999999999999999988765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.4e-06 Score=65.66 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHH
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIY 352 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 352 (511)
.+...+.+.|++++|.+.|+.. ...|+. ..+..+..++...|++++|...++++.+..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566667777777666655 212222 355556666777777777777777777777766 55677777777
Q ss_pred HHcCCchHHHHHHHHHHh
Q 010405 353 VETLKGENAEEVRKTMRK 370 (511)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~ 370 (511)
...|++++|...++...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776665
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.2e-06 Score=83.58 Aligned_cols=116 Identities=7% Similarity=-0.097 Sum_probs=81.3
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 326 (511)
.+...|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 455667777777777777662 1223667777777777788888887777765 3344 45677777777888888888
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHH--HHHcCCchHHHHHHH
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNI--YVETLKGENAEEVRK 366 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 366 (511)
|++.++++.+..|++...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888887777777776 777788888888776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=64.24 Aligned_cols=100 Identities=4% Similarity=-0.271 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLG 316 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 316 (511)
+...+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566777777788888888888888877762 2334677778888888888888888888776 3334 5667788888
Q ss_pred HHHhcCchhHHHHHHHHHhhcCCC
Q 010405 317 ACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
++...|++++|...++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888999999999888887776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=79.20 Aligned_cols=129 Identities=7% Similarity=-0.061 Sum_probs=95.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-------------CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-------------ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP- 306 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 306 (511)
.+..+...+.+.|++++|...|.+..+...-.+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 455555566666666666666666655211111 1467888999999999999999999887 3334
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH-HHHHHHh
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE-VRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 370 (511)
+...|..+..++...|++++|+..|+++++++|++..++..+..++.+.|+++++.+ .++.|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999999999999999999999999999999998875 4455543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-05 Score=63.00 Aligned_cols=61 Identities=8% Similarity=-0.093 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
++..+...+.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|++.+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455555555555555555555554432 22344444555555555555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.9e-05 Score=76.33 Aligned_cols=161 Identities=11% Similarity=-0.035 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----eee
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKC-IKLD----SILCAALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSA 207 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~ 207 (511)
+..+...|...|++++|.+.+..+.+.- ..++ ..+.+.+...+...|+++.|.++++.... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4555666666666666666665554421 0111 11233333444455666777666655432 11 124
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhC--CC--CCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcC-C--CCC--Hh
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSK--GI--SPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-I--KPE--LD 277 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~--~p~--~~ 277 (511)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..++++...... + +|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556677777777777777777776532 11 222 34677778888889999999988887765221 1 111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777778888988887776554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=9.3e-06 Score=64.52 Aligned_cols=108 Identities=3% Similarity=-0.057 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM----KPD----NVIWG 312 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 312 (511)
.+..+...+...|++++|...|....+. .+.+...+..+...|...|++++|...+++. .. .++ ...|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555665555555541 1223445555556666666666666655554 11 112 44566
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
.+...+...|++++|...++++.+..| ++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 666667777777777777777777666 445554444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=63.81 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC-------chhHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH-------DGRYI 346 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 346 (511)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999887 2233 67788888899999999999999999999987765 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010405 347 LLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-05 Score=64.41 Aligned_cols=128 Identities=11% Similarity=-0.004 Sum_probs=75.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHH
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM----PMKPD----NVI 310 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 310 (511)
+..+...+...|++++|...+.+..+...-.++ ...+..+...+...|++++|.+.+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555554431110011 134555666666666666666666554 11111 335
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhhcCC------CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQ------NHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 311 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+..+...+...|++++|...++++.+..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666667778888888888887776321 1134677888888999999999988877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-05 Score=61.19 Aligned_cols=94 Identities=12% Similarity=-0.072 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556666677777777777777766643 3356666666777777777777777777776654 334556666666666
Q ss_pred hcCCHHHHHHHHHhcC
Q 010405 186 KCGSIDLAMQVFHSYG 201 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~ 201 (511)
+.|++++|+..|++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.1e-05 Score=60.25 Aligned_cols=100 Identities=10% Similarity=-0.040 Sum_probs=62.8
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPEL---DHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGA 317 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 317 (511)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3445556666666666666665521 1112 35556666777777777777777665 22232 4456666677
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
+...|++++|...++++.+..|+++.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 778888888888888888888876544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=66.54 Aligned_cols=63 Identities=8% Similarity=0.107 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 356777888888999999999999999999999999999999999999999999999988765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.8e-06 Score=66.00 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 289 AGLLEEAENFIASM-PM---KP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 13 233555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 010405 364 VRKTMRK 370 (511)
Q Consensus 364 ~~~~m~~ 370 (511)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-05 Score=75.20 Aligned_cols=125 Identities=11% Similarity=-0.007 Sum_probs=100.0
Q ss_pred HHhccCCHHHHHHHHHHchhhcC--C---CCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHG--I---KPE-LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPDNV-IWG 312 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~ 312 (511)
.+...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988776322 1 222 567899999999999999999988775 3445543 788
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhh-----cCCCCchh---HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIE-----SDQNHDGR---YILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
.|...|...|++++|+.+++++++ ++|+++.+ ...|..++...+++++|+.++.+++++-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999988 57776544 45778888999999999999999987543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=75.06 Aligned_cols=90 Identities=7% Similarity=-0.089 Sum_probs=78.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999887 5556 5678888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHH
Q 010405 353 VETLKGENAEEV 364 (511)
Q Consensus 353 ~~~g~~~~A~~~ 364 (511)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-05 Score=65.05 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCc-cHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLE-PN----SAILVSLLSACAQLGALDYGNWVYSYIQKKC----IKL-DSI 175 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 175 (511)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+.. .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555666666666666666555432100 01 1244455555555555555555555544321 000 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~ 198 (511)
++..+...|...|++++|.+.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444455555555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=76.26 Aligned_cols=94 Identities=10% Similarity=-0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH-HH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY-VE 354 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~ 354 (511)
.|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..|++++++.|+++.++..|..+. ..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 6777788888888888888888776 3334 5667778888888888888888888888888888877777777663 34
Q ss_pred cCCchHHHHHHHHHHhC
Q 010405 355 TLKGENAEEVRKTMRKR 371 (511)
Q Consensus 355 ~g~~~~A~~~~~~m~~~ 371 (511)
.+..+.+.+.++.|...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 45666777777776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.2e-06 Score=64.74 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHchhhcC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010405 253 LGWVEKGFYYFHSMFDVHG--IKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
.|++++|+..|++..+ .+ -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665 11 1223456667777777777777777777765 2333 4556777777778888888888
Q ss_pred HHHHHHhhcCCCCchh
Q 010405 329 RIGNMLIESDQNHDGR 344 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~ 344 (511)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888877776544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.1e-05 Score=64.51 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=68.6
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCC----------CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-------CCC
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKP----------ELDHYACMVDLLGRAGLLEEAENFIASM-PM-------KPD 307 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~p~ 307 (511)
....+...|++++|...|++..+...-.| +...|..+..++.+.|++++|+..+++. .+ .|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 33444455555555555555544111100 1226777777777788877777776654 33 775
Q ss_pred H-HHH----HHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 308 N-VIW----GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 308 ~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
. ..| .....++...|++++|+..|++++++.|.+...+..
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4 477 888899999999999999999999999988765443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=65.48 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=59.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc-hhHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD-GRYILLS 349 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 349 (511)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 457888888999999999999988876 3344 567888888999999999999999999999999876 3344443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00028 Score=71.75 Aligned_cols=167 Identities=7% Similarity=-0.057 Sum_probs=117.4
Q ss_pred HHHHHHHHhcCC---CCeeehHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--C
Q 010405 191 DLAMQVFHSYGD---KDVSAYTSAIFGLAMNGH----------SIEAFELFENMKSKGISPDSISYIAVLSACSHLG--W 255 (511)
Q Consensus 191 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 255 (511)
++|++.++.+.. .+..+|+.--..+...|+ ++++++.++++.....+ +..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 344555554443 223344444444444444 67888888888775433 5666766666677777 6
Q ss_pred HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 010405 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-LLEEAENFIASM-PMKP-DNVIWGTLLGACRVH----------- 321 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 321 (511)
++++.+.++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888872 2335667777777777888 788888888877 4445 677787776665542
Q ss_pred ---CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 010405 322 ---RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 322 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
+.++++.+.+++++..+|++..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999998888555
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.1e-05 Score=73.56 Aligned_cols=99 Identities=7% Similarity=0.023 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-H
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-VIWGTLLGA-C 318 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~-~ 318 (511)
.|..+..++.+.|++++|+..++...+. -+.+...|..+..+|...|++++|...|++. ...|+. ..+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 6778888899999999999999999872 2345788999999999999999999999987 556643 345444444 3
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCc
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
...+..+.+...++++....|.++
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCC
Confidence 455677888899999999888654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.1e-05 Score=58.91 Aligned_cols=92 Identities=10% Similarity=-0.054 Sum_probs=74.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYI 346 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 346 (511)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888889999999888876 3334 66788888888999999999999999999999987 67778
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 010405 347 LLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~ 366 (511)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=72.97 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=74.2
Q ss_pred HHHCCChhHHHHHHHHHHHC---CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-Cc-cHHHHHH
Q 010405 114 FAQNGRPKEALALFREMQSL---DLEP----NSAILVSLLSACAQLGALDYGNWVYSYIQKK-----CI-KL-DSILCAA 179 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ 179 (511)
+..+|++++|+.++++.++. -+-| ...+++.|..+|...|++++|..+++++++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677777777777666432 1112 2345666777777777777777776666542 21 11 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHH
Q 010405 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 180 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 258 (511)
|...|...|++++|+.+++ +|+++++...... .|+ ..+...+-.++...+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~------------------------~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMIC------------------------KAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655 4444444433221 122 2234444455666777777
Q ss_pred HHHHHHHchh
Q 010405 259 GFYYFHSMFD 268 (511)
Q Consensus 259 a~~~~~~~~~ 268 (511)
|..+|..+.+
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0002 Score=70.96 Aligned_cols=119 Identities=8% Similarity=-0.101 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--------------SAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 170 (511)
..|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 4677777778888888888888877766321111 2445555555555555555555555555543
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHH
Q 010405 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 171 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 224 (511)
+.+...+..+..+|...|++++|+..|++..+ .+..+|..+...+...++.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22344455555555555555555555554432 1233344444444444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=54.00 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777788888888888888888776 2233 56678888888899999999999999999999988888888888877
Q ss_pred HcC
Q 010405 354 ETL 356 (511)
Q Consensus 354 ~~g 356 (511)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00018 Score=69.04 Aligned_cols=118 Identities=13% Similarity=0.029 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-------------------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPK-------------------RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 136 (511)
+..+...|.+.|++++|...|++..+ .+..+|+.+..+|.+.|++++|++.+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 45555666666666666666665442 134567778888888888888888888887653 3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 137 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
.+...+..+..++...|++++|...++++.+.. +.+...+..+..++.+.++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888888887764 3356667777777777776666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=55.51 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678888889999999999999999999999999999999999999999999999999988765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00019 Score=55.72 Aligned_cols=77 Identities=9% Similarity=-0.010 Sum_probs=62.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 294 EAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 294 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3344 5667888888889999999999999999999999888999999999999999999999988765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=4.1e-05 Score=62.69 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=63.9
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc----------hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 288 RAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN----------AEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 288 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
+.+++++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666554 2333 45555555555555544 56999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 010405 356 L-----------KGENAEEVRKTMRKRK 372 (511)
Q Consensus 356 g-----------~~~~A~~~~~~m~~~g 372 (511)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988743
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=8.2e-05 Score=57.14 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc------HHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD------SILC 177 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 177 (511)
...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...++.+++... .+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHHH
Confidence 4556677777777788888888777776653 33566777777777777777777777777776532 12 3444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
..+..++...|+.+.|.+.|+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 55555555555555555444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0034 Score=66.92 Aligned_cols=167 Identities=15% Similarity=0.069 Sum_probs=120.8
Q ss_pred HHHHhcCChHHHHH-HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 010405 19 QFYSVCGRVRDARW-VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFN 97 (511)
Q Consensus 19 ~~~~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 97 (511)
......+++++|.+ ++..++ +......++..+.+.|.+++|+++.+. . ..-.......|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 34445789999988 665544 122337788888999999999987642 1 122445678999999999987
Q ss_pred hCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 98 QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.+...| -+
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KF 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CH
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------ch
Confidence 763 567899999999999999999999998753 4556666666888887777766666654 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
+....+|.+.|++++|++++. +.+++++|..+-+.
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 334455777888888877655 45677777776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00039 Score=67.94 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhh-----cCCCCc---hh
Q 010405 283 VDLLGRAGLLEEAENFIASM---------PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIE-----SDQNHD---GR 344 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 344 (511)
+..+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ..|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566789999999988765 12232 34788888999999999999999999987 345544 56
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 010405 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416 (511)
Q Consensus 345 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 416 (511)
+..|+.+|..+|++++|+.++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999887651110 112469999999888887776665
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00075 Score=50.09 Aligned_cols=68 Identities=4% Similarity=-0.053 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCc---hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 306 PDNVIWGTLLGACRVHRN---AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778788877654444 79999999999999999999999999999999999999999999987654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0014 Score=52.79 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAM 194 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 194 (511)
++++|++.|++..+.| .|+.. +...|...+..++|.+.+++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4455555555666666666666654 44555556555655 45555555
Q ss_pred HHHHhcCC-CCeeehHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 010405 195 QVFHSYGD-KDVSAYTSAIFGLAM----NGHSIEAFELFENMKSKG 235 (511)
Q Consensus 195 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 235 (511)
+.|++..+ .+..++..|...|.. .++.++|+.+|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554432 233444444444444 445555555555544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0014 Score=52.85 Aligned_cols=109 Identities=9% Similarity=-0.076 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cCCHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AGLLEE 294 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 294 (511)
++.++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+ . -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666655 22322 44455555666666666666655 2 234445555555554 445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhh
Q 010405 295 AENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIE 336 (511)
Q Consensus 295 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 336 (511)
|.+.|++.-..-++..+..|...|.. .++.++|...++++.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 55555444111233334444444433 3444444444444444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0021 Score=46.83 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3466677777777888888888887776643 3356677777777777888888888887777764 3355566666665
Q ss_pred HHhc
Q 010405 184 YAKC 187 (511)
Q Consensus 184 y~~~ 187 (511)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0066 Score=61.60 Aligned_cols=113 Identities=5% Similarity=0.010 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGA----------LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG- 188 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g- 188 (511)
.++|++.++++.... +-+...|+.--.++...++ ++++.+.++.+.+.. +-+..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345666666666542 2234445554444544444 566666666666553 334555555555555555
Q ss_pred -CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcC-ChHHHHHHHHHHHhC
Q 010405 189 -SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNG-HSIEAFELFENMKSK 234 (511)
Q Consensus 189 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 234 (511)
+++++++.++++.+ +|..+|+--...+...| .++++++.+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44555555555443 34444554444444455 455555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00032 Score=57.37 Aligned_cols=21 Identities=5% Similarity=0.224 Sum_probs=19.3
Q ss_pred CchhHHHHHHHHHhhcCCCCc
Q 010405 322 RNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~ 342 (511)
|++++|++.|+++++++|++.
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHhCCCCH
Confidence 689999999999999999874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0024 Score=49.28 Aligned_cols=75 Identities=15% Similarity=-0.051 Sum_probs=36.7
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
|++.|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444432 2244455555555555555555555555555543 22344445555555555555555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00056 Score=66.74 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhh-----cCCCCc---hhHHHHHH
Q 010405 289 AGLLEEAENFIASM---------PMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIE-----SDQNHD---GRYILLSN 350 (511)
Q Consensus 289 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 350 (511)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ..|+++ .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888887654 233443 4788889999999999999999999988 355544 56788999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010405 351 IYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999987765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0027 Score=61.86 Aligned_cols=94 Identities=11% Similarity=-0.033 Sum_probs=73.2
Q ss_pred ccCCHHHHHHHHHHchhhcC--CC---CC-HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 010405 252 HLGWVEKGFYYFHSMFDVHG--IK---PE-LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPDNV-IWGTLL 315 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll 315 (511)
..|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999999888765321 22 22 567889999999999999999988775 3445544 788899
Q ss_pred HHHHhcCchhHHHHHHHHHhh-----cCCCCchhH
Q 010405 316 GACRVHRNAEMGQRIGNMLIE-----SDQNHDGRY 345 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 345 (511)
..|...|++++|+.+++++++ .+|+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999988 577776443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0052 Score=59.93 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=77.1
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHG--IKPE----LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPDNV- 309 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~- 309 (511)
.+..+...|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34456677899999999988875321 2222 567888999999999999999988765 3445443
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhh-----cCCCCchhHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIE-----SDQNHDGRYI 346 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 346 (511)
+++.|...|...|++++|+.+++++++ .+|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 788888999999999999999999988 5787765544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.027 Score=59.94 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=56.7
Q ss_pred HHhcCCHHHHHH-HHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 83 LVRFGSVDDACR-VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 83 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
....+++++|.+ ++..++.+ .....++..+.+.|.+++|+++.+ +.. .-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHH
Confidence 345677777777 55443311 122566666777777777776542 111 112234556777777666
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
.+.+ .+...|..|..++.+.|+++.|++.|.++
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4322 35567777777777777777777665544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.018 Score=54.04 Aligned_cols=137 Identities=9% Similarity=-0.068 Sum_probs=62.1
Q ss_pred CCeeehHHHHHHHH--HcC---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhc---cC-----CHHHHHHHHHHchh
Q 010405 203 KDVSAYTSAIFGLA--MNG---HSIEAFELFENMKSKGISPD-SISYIAVLSACSH---LG-----WVEKGFYYFHSMFD 268 (511)
Q Consensus 203 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---~g-----~~~~a~~~~~~~~~ 268 (511)
.+..+|...+.+.. ..+ ...+|..+|++..+. .|+ ...+..+.-++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35566666665533 222 246788888887774 454 3334333333320 00 00000011111111
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 269 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
....+.++..|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0111333445555544444455555555555554 233454444444444555555555555555555555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.002 Score=48.38 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
...+..+...|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444444443322 12233444444444444444444444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.099 Score=40.70 Aligned_cols=140 Identities=9% Similarity=0.032 Sum_probs=97.7
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 295 (511)
...|..++..++..+..... +..-|+.++.-....-+-+-..+.++.+-+.+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 34577777777777766532 44455556655555555566666666665522222 35555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
..-+-.++ .+......-+......|..+.-.+++..+....|.++.....++.+|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555554 244455666788889999999999999987777778899999999999999999999999999999985
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0075 Score=44.80 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=47.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 282 MVDLLGRAGLLEEAENFIASM-PMKP-DNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++.+|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445667778888888887776 3334 455 677777778888888888888888888888877665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0037 Score=46.57 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=53.6
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDG-RYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
....+...|++++|+..++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345678889999999999999999999999 99999999999999999999999988643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.015 Score=54.54 Aligned_cols=133 Identities=13% Similarity=0.043 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHH---cC--------CHHHHHHH
Q 010405 236 ISPDSISYIAVLSACSH--L---GWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGR---AG--------LLEEAENF 298 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g--------~~~~A~~~ 298 (511)
.+.+...|...+++... . ....+|..+|++..+ ..|+ ...|..+..+|.- .+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35567778777776432 2 345789999999987 4565 4455544444321 11 11223332
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 299 IASMPM-KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 299 ~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...+.. ..++..|.++.-.+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 233322 34777888887777778999999999999999997 46788899999999999999999998887644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.019 Score=46.32 Aligned_cols=65 Identities=8% Similarity=-0.066 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 306 PDNVIWGTLLGACRVHR---NAEMGQRIGNMLIESD-Q-NHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...++.|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56777777777777777 6668888888888876 6 4467778888888999999999999988875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.24 Score=40.95 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
....++|+++.|.++.+.+ .+...|..|.....+.|+++-|...|.+... +..+.-.|...|+.++-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456788888888887766 4567899999999999999999988887642 4455556666777777666
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
+-+.....| . ++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 666555554 1 2333344555677777777766543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.15 Score=42.15 Aligned_cols=127 Identities=12% Similarity=0.031 Sum_probs=66.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
..++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34566666666665554 2344566666666666666666666665432 223333344456655544443
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
+.... .| -++.....+.-.|+++++.+++.+.+.-|.... .....|..+.|.++.+.+
T Consensus 84 ~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 33332 11 234444455566777777777776653222211 123355566666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.044 Score=41.27 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-----P----MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 346 (511)
..-+-.|...+.+.|+++.|...|+.. + -.+....+..|..++.+.|+++.|...++++.++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455666666666666666666554 0 1134567788888899999999999999999999998866644
Q ss_pred HH
Q 010405 347 LL 348 (511)
Q Consensus 347 ~l 348 (511)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.044 Score=40.32 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=45.8
Q ss_pred CCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 273 KPELDHYACMVDLLGRAGL---LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456666667776654444 57777777765 3444 4455555666677788888888888888887776
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.026 Score=50.78 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=65.8
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCchhHHHHHHHHHhhcCCCC-chhHHHHHHHHHHc-CCchH
Q 010405 292 LEEAENFIASM-PMKPD---NVIWGTLLGACRV-----HRNAEMGQRIGNMLIESDQNH-DGRYILLSNIYVET-LKGEN 360 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 360 (511)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|.+.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 45565 4567777777776 489999999999999999964 88999999998884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 010405 361 AEEVRKTMRKRKIKRAPG 378 (511)
Q Consensus 361 A~~~~~~m~~~g~~~~~~ 378 (511)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988766553343
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.00017 Score=69.00 Aligned_cols=263 Identities=13% Similarity=0.011 Sum_probs=149.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcC
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFG 87 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 87 (511)
.+.+|+.|..++.+.|++.+|++.| +...|+..|..+|.+..+.|.+++-+..+...++ +++.+=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 4678888889998888888888766 4456677788899999999999999998888876 67777789999999999
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 88 SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
++.+-++++ ..||..-...+..-|...|.++.|.-+|..+... .-|...+...|++..|.+. +.+
T Consensus 131 rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~AVda---ArK 195 (624)
T 3lvg_A 131 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQAAVDG---ARK 195 (624)
T ss_dssp SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGSSTTT---TTT
T ss_pred cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHHHHHH---HHh
Confidence 877654443 2366655666777777888887777666554221 1122222333333333221 111
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHS-YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (511)
..++.||..+-.+|...+.+.-|.-.--. +..+| -...++..|-..|.+++-+.+++.-... -+.....|+-|
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 12344555555555555554444322111 11111 1112333455566666666666554421 13344555555
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCC------CCHhHHHHHHHHHHHcCCHHHHH
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIK------PELDHYACMVDLLGRAGLLEEAE 296 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~------p~~~~~~~li~~~~~~g~~~~A~ 296 (511)
.-.|++- .+++..+.++....+-+++ -....|.-++-.|..-..++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5555543 2333333333332211221 12334666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.078 Score=42.76 Aligned_cols=87 Identities=11% Similarity=-0.053 Sum_probs=54.5
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCchhHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG---LLEEAENFIASM-PMK-P--DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
..+.+-|.+..+ .+ +++..+.-.+..++.+.+ +.+++..++++. ... | +...+..|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444433 22 245555555666666665 444666666655 222 3 23345566677899999999999
Q ss_pred HHHHHhhcCCCCchhH
Q 010405 330 IGNMLIESDQNHDGRY 345 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~ 345 (511)
.++.+++.+|++..+.
T Consensus 93 y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCCCCHHHH
Confidence 9999999999875443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=3.5 Score=41.89 Aligned_cols=310 Identities=10% Similarity=0.008 Sum_probs=166.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChh---HHHHHHHHHHHcCChHHHHHHHccCCC-CC-hhHHHHHHHHHHhcCC
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESDDLDVV---SWNSMINGYVRNGEILEGLKLFDKMPQ-RN-DVSWNSILGGLVRFGS 88 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~li~~~~~~g~ 88 (511)
|.....++ +.|+++.+..+-..+..-... .|..+...+ ......+...++++-.. |- ...-+.-+..+.+.++
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 44444444 568888888887776432222 343333322 22356677777666654 21 2233455667778899
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH--HHHHHHHHH
Q 010405 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY--GNWVYSYIQ 166 (511)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~ 166 (511)
+.....++.. +..+...-.....+....|+..+|......+-..| ......+..++..+...|.+.. ..+=+..+.
T Consensus 88 w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al 165 (618)
T 1qsa_A 88 WRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAM 165 (618)
T ss_dssp HHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999997776 43344444456677788899888888777776555 3345567777777776665432 222222233
Q ss_pred HcC-----------CCccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeee---hHHHHHHHHHcCChHHHHHHHHHH
Q 010405 167 KKC-----------IKLDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA---YTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 167 ~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
..| ++++. .....++..+.+- ..+....... .++... +...+.-+++ .+.+.|...+...
T Consensus 166 ~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 166 KAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSL 240 (618)
T ss_dssp HTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhh
Confidence 322 11111 1112222222221 1122222221 111111 1111222333 3778899999888
Q ss_pred HhCCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-
Q 010405 232 KSKGISPDSISY----IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP- 306 (511)
Q Consensus 232 ~~~g~~p~~~t~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p- 306 (511)
.... ..+.... ..+.......+...++...+..... ..++.....-.+..-.+.|+++.|...|+.|+..+
T Consensus 241 ~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~ 316 (618)
T 1qsa_A 241 AQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK 316 (618)
T ss_dssp HHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG
T ss_pred hhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc
Confidence 6533 2233222 2223233444535566666666543 22333334444445557799999999999996432
Q ss_pred CHHHH-HHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 307 DNVIW-GTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 307 ~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
+..-| -=+..+....|+.++|..+|+.+..
T Consensus 317 ~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 317 EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22222 1234566778999999999999875
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.0057 Score=58.83 Aligned_cols=208 Identities=10% Similarity=0.016 Sum_probs=146.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF 86 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 86 (511)
-|+..|..+|....+.|.+++-.+.+.-.. .+++..=+.|+-+|++.++..+-.+++. .||..-...+.+-|...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e 157 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDE 157 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHc
Confidence 367788899999999999999988886444 2466667789999999999765433222 37777778888888889
Q ss_pred CCHHHHHHHHhhCCC------------------------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 87 GSVDDACRVFNQMPK------------------------RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 87 g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
|.++.|.-+|..+.. .++.+|-.+-.+|...+++.-|.-.--.+.- .|| ..
T Consensus 158 ~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL 232 (624)
T 3lvg_A 158 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--EL 232 (624)
T ss_dssp CCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CC
T ss_pred cCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HH
Confidence 999998888887751 3667899999999999998887655444432 222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------CeeehHHH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----K-------DVSAYTSA 211 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-------~~~~~~~l 211 (511)
..++.-|...|.+++-+.+++...... ......++-|.-.|+|- ++++..+.++.... | ....|.-+
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~El 310 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 310 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHH
Confidence 345666778888888888777766321 34567788888888874 44554444443322 2 44568888
Q ss_pred HHHHHHcCChHHHHH
Q 010405 212 IFGLAMNGHSIEAFE 226 (511)
Q Consensus 212 i~~~~~~g~~~~A~~ 226 (511)
+-.|..-.+++.|..
T Consensus 311 vfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 311 VFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHTCHHHHHH
T ss_pred HHHHhcchhHHHHHH
Confidence 888888888876644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.22 Score=38.64 Aligned_cols=65 Identities=9% Similarity=-0.069 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhcCchhH---HHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 306 PDNVIWGTLLGACRVHRNAEM---GQRIGNMLIESD-Q-NHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|+..+--.+..++.+..+... ++.+++.+.+.. | ........|+-++.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444333 555555555543 3 2233444555566666666666666665554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.21 Score=44.98 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHhhCCCCCh--hHHHHHHHH-HHHC--CC------hhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHh
Q 010405 86 FGSVDDACRVFNQMPKRSL--VSWVVLISG-FAQN--GR------PKEALALFREMQSLDLEPN---SAILVSLLSACAQ 151 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~ 151 (511)
.++..+-...+.+....++ ..|..++.+ ++.. |. ..+|..++++..+. .|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 4444555556666654444 356666543 3332 32 24555556665553 344 4566666666666
Q ss_pred c-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 010405 152 L-----GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLAMQVFHSYG 201 (511)
Q Consensus 152 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~ 201 (511)
. |+.++|.+.|++.++.+..-+..++....+.++.. |+.++|.+.+++..
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 67777777777777664322355555566666553 66666666555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.53 Score=35.09 Aligned_cols=64 Identities=13% Similarity=-0.085 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLD------LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
.-+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345567777777777777777777665421 1234456666777777777777777777777665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.18 Score=52.17 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=50.3
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.-|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 336788999999999999999999999999999999999999999999998875
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=2.3 Score=33.20 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+..+..+...|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++-+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344444555555555555555322 2344445555555555555555555555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=3.1 Score=32.78 Aligned_cols=66 Identities=8% Similarity=-0.088 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhcCc---hhHHHHHHHHHhhcCCCC-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 305 KPDNVIWGTLLGACRVHRN---AEMGQRIGNMLIESDQNH-DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 305 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.|+..+--.+..++.+..+ ..+++.+++.+....|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455544444555544443 446777777777766643 34555777778888888888888877765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.03 E-value=1 Score=34.85 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=51.8
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C-CHH-HHHHHHHHHHhcCchhHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE---AENFIASM-PMK-P-DNV-IWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~~~-~~~~ll~~~~~~g~~~~a~~ 329 (511)
..+.+-|..... .|. |+..+--.+..++.+.....+ ++.++++. ... | +.. ....|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444433 222 555555555556666665554 56666655 222 3 122 33345566888899999999
Q ss_pred HHHHHhhcCCCCchhHH
Q 010405 330 IGNMLIESDQNHDGRYI 346 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~ 346 (511)
.++.+++.+|++..+..
T Consensus 96 ~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHH
Confidence 99999999998755443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.82 E-value=0.53 Score=37.54 Aligned_cols=53 Identities=6% Similarity=-0.028 Sum_probs=38.9
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
.+|+++|.++|+.++.....-+..|...+..-.++|+.+.|.+++.+....+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37788888888888775443355666777777788888888888887776554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.63 E-value=2 Score=31.26 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
..+...|++++|..+.+.+.-||...|.+|... +.|..+++..-+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456678888888888888888888888776554 6677777777776776665 4443333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.41 E-value=1.9 Score=31.35 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
..+...|++++|..+.+.+.-||...|.+|... +.|..+++..-+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456678999999999888888898888777554 7788888887777777766 4444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.23 E-value=2.3 Score=33.92 Aligned_cols=95 Identities=12% Similarity=0.272 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHHHCCCh------hHHHHHHHHHHHCCCCCCHh----HHHHHHH---HHHhcCCHHHHHHHHHHHHHc
Q 010405 102 RSLVSWVVLISGFAQNGRP------KEALALFREMQSLDLEPNSA----ILVSLLS---ACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----t~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 168 (511)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...++.+.|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4667777777777777887 7777777777654 555431 1111110 112235666666666666554
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010405 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 169 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 198 (511)
+-.- ..+|......-.+.|++..|++++.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2221 4444444444444555555555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.98 E-value=5.1 Score=42.48 Aligned_cols=247 Identities=9% Similarity=-0.039 Sum_probs=130.4
Q ss_pred HhcCCHHHHHHHHhhCCC----CCh--hHHHHHHHHHHHCCChhHHHHHHHHHHHCCC--C-----CCHhHHHH--HHHH
Q 010405 84 VRFGSVDDACRVFNQMPK----RSL--VSWVVLISGFAQNGRPKEALALFREMQSLDL--E-----PNSAILVS--LLSA 148 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----p~~~t~~~--ll~~ 148 (511)
...|+.+++..+++.-.. .+. ..-..+.-+.+..|..+++++++.......- . +....-.. |..+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 345677777777776543 122 2334455566677777778887766554311 0 11111122 2222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C--eeehHHHHHHHHHcCChHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDK-D--VSAYTSAIFGLAMNGHSIE 223 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~ 223 (511)
+...++ +++...+..++...- ... ...-+|...|...|+-+-...++..+.+. + +.-.-++.-++...|+.+.
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred hcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 233333 344555555544321 111 22234455566778877777776654331 1 2222334445557788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 224 AFELFENMKSKGISPDSISYI---AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
+..+.+.+.... .| ..-|. ++.-+|+..|+.....+++..+.. ....++.....+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 888888887631 22 22333 344578888998888888888876 222333333334444444676666666666
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHhh
Q 010405 301 SMP--MKPDNVIWGTLLGACRVHRNA-EMGQRIGNMLIE 336 (511)
Q Consensus 301 ~~~--~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 336 (511)
.+. ..|.+..-.++.-+....|+. .++..++..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 542 234444333444444444443 456667666654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.85 E-value=6.7 Score=33.16 Aligned_cols=183 Identities=9% Similarity=0.003 Sum_probs=103.3
Q ss_pred ChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 010405 26 RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105 (511)
Q Consensus 26 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (511)
+.+....+.+.+..+|...-...+..+.+.|..+..-.+.+.+..+|..+-...+.++.+.++.+....+.+.+..+|..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33334444455556666666666777777776555555555556677777667777777777655555555556666666
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
.-...+.++.+.|+.+ +...+..+.. .|+...-...+.++...+..+ +...+..+.+ .++..+-...+.+..
T Consensus 97 vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 97 VRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 6666666666666643 3444444443 356666666677777776643 3333333332 345566666667777
Q ss_pred hcCCHHHHHHHHHhc-CCCCeeehHHHHHHHHH
Q 010405 186 KCGSIDLAMQVFHSY-GDKDVSAYTSAIFGLAM 217 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~ 217 (511)
+.+..+ +...+..+ .+++...-...+.++..
T Consensus 169 ~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 169 EIGGER-VRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHCSHH-HHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HhCchh-HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 766633 33333333 33444444444444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.61 E-value=7.1 Score=33.01 Aligned_cols=187 Identities=11% Similarity=-0.002 Sum_probs=116.9
Q ss_pred CChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 010405 56 GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135 (511)
Q Consensus 56 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 135 (511)
++.+....+.+.+..+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+..+ +...+..+..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--- 91 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK--- 91 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---
Confidence 344444455555666777777777888888887555556666666777766666677777777643 4444444443
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHH
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 215 (511)
.+|...-...+.++...++.+.. ..+..+.+ .++..+-...+.++.+.|..+....+.+.+.+++...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46777777778888888875433 33333332 456677777778888877765444445555556766666677777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
.+.+. .++...+.++.+. ++...-...+.++...+
T Consensus 168 ~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 77776 4667777776653 35555555555555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.40 E-value=11 Score=40.08 Aligned_cols=256 Identities=15% Similarity=0.116 Sum_probs=141.9
Q ss_pred HHHHcCChHHHHHHHccCCC----CChhH--HHHHHHHHHhcCCHHHHHHHHhhCC-CCC----------hhHHHHHHHH
Q 010405 51 GYVRNGEILEGLKLFDKMPQ----RNDVS--WNSILGGLVRFGSVDDACRVFNQMP-KRS----------LVSWVVLISG 113 (511)
Q Consensus 51 ~~~~~g~~~~A~~~~~~m~~----~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~ 113 (511)
+....|+.++++.++..... .+..+ -..+.-+...+|.-+++..++.... ..+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 46678888999999988765 22222 2223334455665556766555432 222 1223344444
Q ss_pred HHHCCCh-hHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH--HHhcC
Q 010405 114 FAQNGRP-KEALALFREMQSLDLEPNS--AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM--YAKCG 188 (511)
Q Consensus 114 ~~~~g~~-~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--y~~~g 188 (511)
.+-.|.- +++.+.+..+.... .+.. .+-.++...+...|+.+-...++..+.+.. +..+...+..+ +.-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 4444543 46667776666532 1111 122233344556788888888888777642 22333333333 44678
Q ss_pred CHHHHHHHHHhcCC-CCe-eehH---HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 189 SIDLAMQVFHSYGD-KDV-SAYT---SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 189 ~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
+.+.+..+.+.+.. .+. +-|. ++..+|+-.|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888777777653 333 2343 33456777888766666888887642 222222222222444566666677777
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLL-EEAENFIASMPMKPDNVIWGT 313 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ 313 (511)
..+.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-..
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 76665 2345555555555555555554 577888888754566554433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.07 E-value=3.3 Score=30.19 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
.-++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+...-||.++|-++-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776666553 33333334455677899999999999888899998887755 466777788877777766
Q ss_pred CCCCCCHHHHH
Q 010405 234 KGISPDSISYI 244 (511)
Q Consensus 234 ~g~~p~~~t~~ 244 (511)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.81 E-value=14 Score=33.92 Aligned_cols=182 Identities=11% Similarity=0.030 Sum_probs=108.1
Q ss_pred HHHHHcCCh---HHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHH
Q 010405 50 NGYVRNGEI---LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 50 ~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 126 (511)
..-...|++ =+|.+. |.++..-|.+.+++++|.+++-. -...+.+.|+...|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 344566777 666654 55677788899999999887643 23445566776655544
Q ss_pred H----HHHHHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHH----HcC--CCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 127 F----REMQSLDLEPNSAILVSLLSACAQLGALDY-GNWVYSYIQ----KKC--IKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 127 ~----~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
- +-+.+.++++|......|+..+.....-+- =..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3 555566788888887777777766553221 122333333 233 34577888899999999999999998
Q ss_pred HHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 196 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.|-.-.++.+..+..|+.-+...+... .++...-.+++. |...+++..|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 874222222244444443333222211 112222333333 4556788888877666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.77 E-value=16 Score=34.54 Aligned_cols=288 Identities=11% Similarity=0.028 Sum_probs=147.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--------CChhHHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhHH-----
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQ--------RNDVSWNSILGGLVRF-GSVDDACRVFNQMPK---RSLVSW----- 107 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~----- 107 (511)
...|...|.+.|+.++..+++...+. ........|++.+... +..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777766666666543 1233445566666553 223333333333221 111222
Q ss_pred -HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHH
Q 010405 108 -VVLISGFAQNGRPKEALALFREMQSLDLEPNS-----AILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAA 179 (511)
Q Consensus 108 -~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 179 (511)
.-++..|...|++.+|++++.++.+.=-+.|. ..+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25788899999999999998888763112222 33455566778889999998888777553 23233333222
Q ss_pred H----HHHHH-hcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 180 L----IDMYA-KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 180 l----i~~y~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
+ .-++. ..+++..|...|-+.. .+|...|.. ++. +...|..|. +.....
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~-------------~~lkYlvL~-aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KAL-------------TSLKYMLLC-KIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHH-------------HHHHHHHHH-HHHTTC
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHH-------------HHHHHHHHH-HHHcCC
Confidence 1 22344 5677777766665320 111111110 001 122332222 222222
Q ss_pred CHHHHHHHHH-HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHH---HHHHHHHHHhcCchhHHH
Q 010405 255 WVEKGFYYFH-SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP--MKPDNVI---WGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 255 ~~~~a~~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~---~~~ll~~~~~~g~~~~a~ 328 (511)
..+-..++. .....+ ..|....+..++.+| +.+++.+...+++... +..|... +..|..... .
T Consensus 236 -r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~ 304 (394)
T 3txn_A 236 -SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------E 304 (394)
T ss_dssp -GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------H
T ss_pred -HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------H
Confidence 111112211 111112 345565666676665 4567877777777652 3445543 222222221 1
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
..+.++ ..|-....+..++..+.- ..++++..+-+|...|.
T Consensus 305 ~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 222222 245555666666665543 67899999999988765
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=88.66 E-value=9.7 Score=31.82 Aligned_cols=149 Identities=9% Similarity=0.023 Sum_probs=70.2
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 010405 34 FDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113 (511)
Q Consensus 34 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 113 (511)
++.+..+|...-...+.++.+.+..+....+.+.+..+|..+-...+..+.+.|..+....+.+.+..++...-...+.+
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 99 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 99 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33444455555555555555555544444444444445555555555555555554444444444445555554455555
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
+.+.++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.|..
T Consensus 100 L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 100 LGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 55555433 2333333332 335445555555555555432 2222222222 23444555555555555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.61 E-value=14 Score=33.63 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=110.2
Q ss_pred HHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHH---
Q 010405 50 NGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL--- 126 (511)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--- 126 (511)
..-...|++=+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|-++
T Consensus 21 ~~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHH
Confidence 344556777777765 56778888889999999888643 23445667776665553
Q ss_pred -HHHHHHCCCCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHHH----HcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010405 127 -FREMQSLDLEPNSAILVSLLSACAQLGALD-YGNWVYSYIQ----KKC--IKLDSILCAALIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 127 -~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 198 (511)
.+-..+.+++++......++..+.....-+ .=..+.+.++ +.| ...++.....+...|.+.|++.+|+..|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 455566788888888888887776543211 1123333333 332 23478889999999999999999998776
Q ss_pred hcCCCCeeehHHHHHHHHHc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 199 SYGDKDVSAYTSAIFGLAMN---GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 199 ~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.-...|...+..++.-+... |...++ +...-.+++ -|...|++..|..+|+...+
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 32222344444443333322 222221 111222233 24456888888888877654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.10 E-value=3 Score=30.31 Aligned_cols=86 Identities=9% Similarity=0.035 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
.-++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+...-||.++|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776666543 33333334455677899999999999888899998877654 467888888888877777
Q ss_pred CCCCCCHHHHH
Q 010405 234 KGISPDSISYI 244 (511)
Q Consensus 234 ~g~~p~~~t~~ 244 (511)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.80 E-value=1.4 Score=42.11 Aligned_cols=68 Identities=12% Similarity=-0.013 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccCCce
Q 010405 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK-----RKIKRAPGC 379 (511)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 379 (511)
..++.++...|+.+++...++.+...+|-+...+..|+.+|.+.|+..+|.+.|+...+ .|+.|.+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566778889999999999999999998888999999999999999999999887654 477766553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.66 E-value=4.2 Score=31.63 Aligned_cols=65 Identities=8% Similarity=-0.090 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhhcCCC-CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 306 PDNVIWGTLLGACRVHR---NAEMGQRIGNMLIESDQN-HDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|+..+--.+..++.+.. +..+++.+++.+.+..|. ....+..|+-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444333444444333 344566777776665553 234556677777777777777777776664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.55 E-value=2.4 Score=31.07 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.|- ....|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 3466677777777888999999999999999999999999999999875443 3456777664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.96 E-value=3.4 Score=33.56 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASMP 303 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~~ 303 (511)
.---+...|.+.|++++|+.+++.+|
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345556666677777777666664
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.84 E-value=13 Score=31.09 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=93.0
Q ss_pred HHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH
Q 010405 64 LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143 (511)
Q Consensus 64 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 143 (511)
+++.+..+|..+-...+..+.+.+..+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~ 94 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 94 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 3344445666666666666666666444455555555566655555555666666543 3333434433 35666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHH
Q 010405 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223 (511)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 223 (511)
..+.++...++.+....+. .+.+ .++..+-...+.+..+.|+.+....+.+.+.+++...-...+.++...|. .+
T Consensus 95 ~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~ 169 (201)
T 3ltj_A 95 SAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ER 169 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hh
Confidence 6666777666654333322 2222 34555666666666666664443344444444555555555666666655 35
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010405 224 AFELFENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
+...+..+... ++...-...+.++.
T Consensus 170 ~~~~L~~~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 170 VRAAMEKLAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 55555555542 34433333444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.35 E-value=20 Score=32.93 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHh
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF----ENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
.+.++..=|.+.+++++|++++..- ...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5556667789999999999876532 34566778876666554 44456788889888888887776
Q ss_pred ccCCHH-HHHHHHHHchh---hcC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchh
Q 010405 252 HLGWVE-KGFYYFHSMFD---VHG--IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 252 ~~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 325 (511)
....-+ .=..+.+.+.+ ..| ..-++.....+...|.+.+++.+|+..|= .+..+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 554321 11223333322 122 23457778889999999999999998884 3434444666555554443332
Q ss_pred HHHHHHHHHhhcCCCCchhHH-HHHHHHHHcCCchHHHHHHHHHHh
Q 010405 326 MGQRIGNMLIESDQNHDGRYI-LLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|.....|. ..+--|.-.++...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 334456777889999888776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.23 E-value=20 Score=39.56 Aligned_cols=122 Identities=4% Similarity=-0.154 Sum_probs=86.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC----------------
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKP---------------- 306 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p---------------- 306 (511)
.++..+...+..+.+.++..-. +.++..--.+..+|...|++++|.+.|++. ++.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 4555666677777666654333 233444456778889999999999999887 2111
Q ss_pred -------CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC-CCCc----hhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 307 -------DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD-QNHD----GRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 307 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
-..-|..++..+.+++.++.+.++.+.+++.. +++. ..|..+...+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 11235667777889999999999999998843 3332 256778889999999999999998776544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.77 E-value=27 Score=36.21 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=32.6
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASMP 303 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 303 (511)
|...|+++.|+.+-++... ..| +-.+|..|...|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456667777766666654 233 35667777777777777777776666664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.56 E-value=7.4 Score=31.59 Aligned_cols=113 Identities=10% Similarity=-0.004 Sum_probs=63.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-------HhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-------LDHYACMVDLLGRAGLLEEAENFIASM-------PMKPD 307 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~ 307 (511)
++..-+..+...|.++.|+-+.+.+....+.+|+ ..++..+.+++...|++..|...|++. +..|+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566677778888887777765543333333 134566677778888888877777663 11121
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
. ...+ .. ...... -.. .+.+...-+-+..+|.+.|++++|+.+++.+
T Consensus 102 ~--~~~~-~~--~ss~p~--------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 V--RPST-GN--SASTPQ--------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c--cccc-cc--cCCCcc--------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1111 00 000000 000 1223356677899999999999999998755
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.34 E-value=8 Score=28.35 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+.-+..+-++.+...++.|++....+.+.||.+.+++..|.++++-++... .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566667777777888999999999999999999999999998887653 333456666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.02 E-value=5.9 Score=37.64 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
++.++...|+.+++...+..+.... +.+...+..||.+|.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444555555555544444432 334445555555555555555555555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.67 E-value=5.4 Score=30.96 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+..+-++.+....+-|+.....+.|.+|.+.+++..|.++|+.++.+.| +....|..+++ +-..+++++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq---------ElkPtl~EL 139 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH---------HHhhHHHHh
Confidence 5666677777788999999999999999999999999999999987544 44556777764 444555555
Q ss_pred C
Q 010405 303 P 303 (511)
Q Consensus 303 ~ 303 (511)
+
T Consensus 140 G 140 (152)
T 2y69_E 140 G 140 (152)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.30 E-value=55 Score=36.03 Aligned_cols=87 Identities=10% Similarity=-0.018 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--eeehHHHHH
Q 010405 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSIDLAMQVFHSYGDKD--VSAYTSAIF 213 (511)
Q Consensus 140 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~ 213 (511)
.-|..++..+.+.+..+.+.++-..+++...+.+ ...|..+...+...|++++|...+-.++... ......++.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3466777778888888888887777766532222 1257778888888899999988887765432 245667788
Q ss_pred HHHHcCChHHHHH
Q 010405 214 GLAMNGHSIEAFE 226 (511)
Q Consensus 214 ~~~~~g~~~~A~~ 226 (511)
.++..|+.+.-+.
T Consensus 980 ~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 980 QLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHCCHHHHHH
T ss_pred HHHhCCChhhhhC
Confidence 8888887665443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.15 E-value=44 Score=32.22 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=118.6
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHH--HHHHHHHHHhcCC
Q 010405 118 GRPKEALALFREMQS-----LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSIL--CAALIDMYAKCGS 189 (511)
Q Consensus 118 g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~li~~y~~~g~ 189 (511)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+. |..+...+ .+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 788999988766653 234456677888999999999999988877766553 33222221 1222333333333
Q ss_pred H--HHHHHHHHhcCC-CCeee---------hHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhc
Q 010405 190 I--DLAMQVFHSYGD-KDVSA---------YTSAIFGLAMNGHSIEAFELFENMKSK--GISPD---SISYIAVLSACSH 252 (511)
Q Consensus 190 ~--~~A~~~~~~~~~-~~~~~---------~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~ 252 (511)
. +.-..+.+.... .+... ...|...|...|++.+|.+++.++... |..+. ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 223334443332 11112 245677888999999999999998653 32222 2355666778999
Q ss_pred cCCHHHHHHHHHHchhh-cCC--CCC--HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 253 LGWVEKGFYYFHSMFDV-HGI--KPE--LDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+++.+|..++.++... ... +|+ ...|.+++..+...+++.+|...|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999887531 112 222 345678888888899999988876664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.84 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.48 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.33 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.31 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.78 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.38 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.26 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.6 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.34 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.64 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.64 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.76 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-21 Score=187.85 Aligned_cols=336 Identities=9% Similarity=-0.012 Sum_probs=184.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 90 (511)
+...+.+.|++++|++.|+++. +.++.+|..+...|.+.|++++|+..|+++.+ .+..+|..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 4566778999999999998765 34678899999999999999999999998864 35678899999999999999
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC--------------------------------
Q 010405 91 DACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDL-------------------------------- 135 (511)
Q Consensus 91 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------------------------- 135 (511)
+|...+....+ .+...+..........+....+............
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 99999988753 2233333333333334444443333333322211
Q ss_pred -CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHH
Q 010405 136 -EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSA 211 (511)
Q Consensus 136 -~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 211 (511)
+-+..++..+...+...|++++|...++..++.. +.+...+..+...|...|++++|...|++... .+...|..+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 243 (388)
T d1w3ba_ 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence 1233344444444445555555555555444432 22334444455555555555555555444332 233334444
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
...+.+.|++++|+..|++..+.. +-+..++..+...+...|+.++|.+.++.... ..+.+...+..+...+.+.|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCC
Confidence 444555555555555555544431 11233444444445555555555555544443 122334444444455555555
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
+++|.+.|++. ...| +..+|..+...+...|++++|+..++++++++|+++.+|..|+.+|.+.|
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 55555555443 3333 23344444444555555555555555555555555555555555554444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.2e-20 Score=176.11 Aligned_cols=317 Identities=15% Similarity=0.079 Sum_probs=258.9
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChh
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPK 121 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 121 (511)
+...+.+.|++++|++.|+++.+ | +..++..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 45567789999999999999864 4 577888999999999999999999998753 3 5678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHH----------------------------------hcCCHHHHHHHHHHHHH
Q 010405 122 EALALFREMQSLDLEPNSAILVSLLSACA----------------------------------QLGALDYGNWVYSYIQK 167 (511)
Q Consensus 122 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----------------------------------~~~~~~~a~~~~~~~~~ 167 (511)
+|+..+........ .+............ ..+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 99999999887542 23332222222222 23333444444444444
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 244 (511)
.. +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+++....+ ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 42 34567788889999999999999999987653 355688899999999999999999999988764 33567788
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVH 321 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~ 321 (511)
.+...+...|++++|...|+++.+ ..| +...+..+...+...|++++|.+.++.. ....+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 888999999999999999999987 334 4778999999999999999999999887 2334677888889999999
Q ss_pred CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.1e-14 Score=134.44 Aligned_cols=242 Identities=12% Similarity=-0.021 Sum_probs=180.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
+-.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...+.++++.. |-+...+..+...|..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 3356777889999999999999988864 3367788888999999999999999999988874 4467788888888889
Q ss_pred cCCHHHHHHHHHhcCC--CCee-ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 187 CGSIDLAMQVFHSYGD--KDVS-AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
.|++++|.+.++.... |+.. .+........ ..+.......+..+...+..+++...|
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 9999998888887643 2111 0000000000 000000111122233445677788888
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
....+...-.++...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|++.++++++.+|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 887764444456778888999999999999999999886 3344 56788889999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 342 DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+.++..++.+|.+.|++++|.+.+++..+
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6.8e-14 Score=130.82 Aligned_cols=266 Identities=13% Similarity=0.015 Sum_probs=195.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 154 (511)
.....+.+.|++++|...|+++.+ | +..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456678899999999999999764 3 56789999999999999999999999988754 3367888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
+++|.+.++.+...... ............. ..+.......+..+...+...+|...|.+....
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999876321 1111100000000 001111111223344556677888888887764
Q ss_pred CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 010405 235 GI-SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIW 311 (511)
Q Consensus 235 g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 311 (511)
.. .++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +...|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 32 335667778888899999999999999998872 2334778889999999999999999999886 4445 56688
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhcCCCCch-----------hHHHHHHHHHHcCCchHHHH
Q 010405 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDG-----------RYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~ 363 (511)
..+..+|...|++++|+..|++++++.|++.. .+..+..++...|+.+.+..
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999999999998887654 33456666777777765543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.2e-09 Score=102.15 Aligned_cols=262 Identities=11% Similarity=-0.042 Sum_probs=181.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-ccHHHHHH
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPN----SAILVSLLSACAQLGALDYGNWVYSYIQKKC----IK-LDSILCAA 179 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~ 179 (511)
.....+...|++++|+++|++..+.....+ ..++..+..++...|++++|...++.+.+.. .. .....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 345566778888888888888776421111 2356667777888888888888887776532 11 11335566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------CC----eeehHHHHHHHHHcCChHHHHHHHHHHHhCCC----CCCHHHHH
Q 010405 180 LIDMYAKCGSIDLAMQVFHSYGD-------KD----VSAYTSAIFGLAMNGHSIEAFELFENMKSKGI----SPDSISYI 244 (511)
Q Consensus 180 li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~ 244 (511)
+...|...|++..|...+..... +. ...+..+...+...|+++.+...+........ .....++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 67778888888888877765432 11 12345566778888999999988888765321 22234555
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHH
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-----DNVIWGT 313 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ 313 (511)
.....+...++...+...+........-... ...+..+...+...|++++|...++.. ...| ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5666677888888888887776553222111 334566777888999999999999886 2222 2345666
Q ss_pred HHHHHHhcCchhHHHHHHHHHhh------cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIE------SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+..++...|++++|...++++.. ..|....++..++.+|...|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77889999999999999999875 3444566888999999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=2.6e-09 Score=98.34 Aligned_cols=186 Identities=10% Similarity=0.052 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-eeehHHHHHHHHHcCChHHHHHHHH
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-D-VSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
..+++..++++.++...+.+...|..++..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.++|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4577888888888765566677888888888889999999999988754 2 2 2357788888888888889999998
Q ss_pred HHHhCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CC
Q 010405 230 NMKSKGISPDSISYIAVLS-ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM----PM 304 (511)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 304 (511)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...+...++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88776432 3333333332 234467888899988888873 3445677888888888888888888888875 33
Q ss_pred CCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 305 KPD--NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 305 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.|+ ...|...+..-..+|+.+.+..+++++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 332 45788888877888888888888888888777553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=5.1e-09 Score=97.66 Aligned_cols=259 Identities=11% Similarity=-0.031 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc---c
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDL-EPN----SAILVSLLSACAQLGALDYGNWVYSYIQKK----CIKL---D 173 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~ 173 (511)
+++.+...|...|++++|+..|++..+... .++ ..++..+...+...|++..+...+...... +.+. .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 344455555555555555555554433110 001 123334444455555555555555544331 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----CeeehHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC--
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD----K----DVSAYTSAIFGLAMNGHSIEAFELFENMKSK----GISPD-- 239 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-- 239 (511)
...+..+...|...|+++.+...+..... . ...++..+...+...++..++...+.+.... +..+.
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 12344455556666666666666554432 0 1122333444555666666666666554331 11111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASM-------PMKPD-NV 309 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 309 (511)
...+..+...+...|+.+.|...+....+...-.+ ....+..+...+...|++++|...+++. +..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 12344455566777888888888877765211111 1334556777888888888888877664 33333 33
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCC---------CchhHHHHHHHHHHcCCchHHHHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQN---------HDGRYILLSNIYVETLKGENAEEV 364 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~ 364 (511)
.+..+...+...|++++|.+.+++++++.+. ....+..++..+...++.+++.+-
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 5666667788888888888888888774321 112334455566667777776543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=6.4e-10 Score=99.57 Aligned_cols=200 Identities=11% Similarity=-0.065 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHH
Q 010405 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAM 217 (511)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 217 (511)
++..+..++.+.|++++|...|++.++.. |.++.+++.+..+|.+.|++++|++.|+++.+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 45555666666666666666666666653 33556666666667777777777776666543 234456666667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC----HH
Q 010405 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL----LE 293 (511)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~ 293 (511)
.|++++|+..|++..+... .+......+..++...+..+....+...... ..+....++ ++..+..... .+
T Consensus 118 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 7777777777777665421 1233333333334444444444444444433 112211222 2222221111 22
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH
Q 010405 294 EAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 294 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 346 (511)
.+...+... ...|+ ..+|..+...+...|++++|...|++++..+|++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 222221111 11122 235666777888999999999999999999998754443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.7e-09 Score=98.42 Aligned_cols=223 Identities=12% Similarity=0.132 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG-ALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.|+.+...+.+.+.+++|+++++++.+.. +-+...|+....++...+ ++++|...++.+++.. +-+..+|+.+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 44455555555556666666666555532 223344455555544443 3555555555555543 22344444444444
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
.+ .|++++|++.+.++.+... -+...|..+...+.+.|++++|++.++
T Consensus 123 ~~-------------------------------l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 123 EW-------------------------------LRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp HH-------------------------------HTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred Hh-------------------------------hccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44 4555555555555544321 134455555555555555555555555
Q ss_pred HchhhcCCCC-CHhHHHHHHHHHHHcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 265 SMFDVHGIKP-ELDHYACMVDLLGRAGL------LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 265 ~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
.+.+ +.| +...|+.+..++.+.+. +++|.+.+... ...| +...|..+...+.. ...+++.+.++.+.
T Consensus 171 ~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 171 QLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred HHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 5554 122 24444444444444433 45666666554 3344 56667666555443 44677888888888
Q ss_pred hcCCCCch--hHHHHHHHHHHc--CCchHHHHHHH
Q 010405 336 ESDQNHDG--RYILLSNIYVET--LKGENAEEVRK 366 (511)
Q Consensus 336 ~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~~~~ 366 (511)
++.|+... .+..++..|... +..+.+...++
T Consensus 247 ~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 247 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 87775433 444566666443 34444444333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=3.5e-09 Score=97.64 Aligned_cols=211 Identities=9% Similarity=-0.012 Sum_probs=158.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNG-RPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
...++.+...+.+.+..++|+.+++++.+ | +..+|+.....+...| ++++|+..++...+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 34677788889999999999999999874 3 5678999999988876 5899999999998764 4478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCC-----
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGH----- 220 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----- 220 (511)
+...|++++|...+..+++.. +.+..+|..+...|.+.|++++|++.|+.+.+ .+..+|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 999999999999999999975 55788999999999999999999999998765 356678877777666554
Q ss_pred -hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHH
Q 010405 221 -SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287 (511)
Q Consensus 221 -~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 287 (511)
+++|++.+.+..... +-+...|..+...+...| .+++.+.++...+......+...+..++..|.
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 467888887777643 224566666655555443 46666666666552222223444455555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=1.9e-10 Score=107.50 Aligned_cols=258 Identities=7% Similarity=-0.087 Sum_probs=178.5
Q ss_pred CHHHHHHHHhhCCC--CC-hhHHHHHHHH----------HHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-
Q 010405 88 SVDDACRVFNQMPK--RS-LVSWVVLISG----------FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG- 153 (511)
Q Consensus 88 ~~~~A~~~~~~~~~--~~-~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~- 153 (511)
..++|..++++..+ |+ ...|+..-.. +...|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 34566666665542 32 2334432222 233455778888888887753 336667777777776665
Q ss_pred -CHHHHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHH
Q 010405 154 -ALDYGNWVYSYIQKKCIKLDSILC-AALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELF 228 (511)
Q Consensus 154 -~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 228 (511)
+++++...+..+++.. +.+...+ ..+...+...|.+++|++.++.+.+. +..+|+.+...+.+.|++++|...+
T Consensus 123 ~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4788888888888874 3344444 34557777889999999999888763 5567888888888888888876666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 010405 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP- 306 (511)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 306 (511)
++.... .|+. ..+...+...+..+++...+..... .-+++...+..++..+...|+.++|...+.+. ...|
T Consensus 202 ~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 202 RLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp SSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 544432 1221 1233334556667778777777765 23444556667788888889999999998876 5556
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
+...|..+...+...|+.++|.+.++++.+++|.+...|..|...+.-
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 445777788889999999999999999999999888887877766653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.3e-09 Score=97.39 Aligned_cols=213 Identities=10% Similarity=-0.063 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHcCC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHH
Q 010405 156 DYGNWVYSYIQKKCI-KL--DSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 156 ~~a~~~~~~~~~~~~-~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
+.+..-++++..... .+ ...++..+..+|.+.|++++|++.|++..+ .++.+|+.+..+|...|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 444444555554321 11 234677788999999999999999998764 467789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 010405 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN 308 (511)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 308 (511)
+..+.... +..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++.
T Consensus 96 ~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 96 SVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 99985322 4667888889999999999999999999872 2234444444555556666655555544433 112222
Q ss_pred HHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 309 VIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 309 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..+. ++..+.. .+..+.+...+.......|....+|..++..|...|++++|.+.+++.....
T Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 173 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222 2222221 2223344444444444556666788899999999999999999999887644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=2.2e-08 Score=91.93 Aligned_cols=182 Identities=7% Similarity=-0.082 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 188 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+.+.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456788889987643 3455688888889999999999999999987543333557888999999999999999999
Q ss_pred HHchhhcCCCCCHhHHHHHHHH-HHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 264 HSMFDVHGIKPELDHYACMVDL-LGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
..+.+. .+.+...|...... +...|+.+.|..+|+.+ ... .+...|...+..+...|+.+.|..+|++++...|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999872 23344455544444 34468999999999987 222 36778999999999999999999999999997665
Q ss_pred Cc----hhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 341 HD----GRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 341 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
++ ..|...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 36777777778889999999999988763
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.2e-09 Score=101.89 Aligned_cols=255 Identities=7% Similarity=-0.088 Sum_probs=182.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCccHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSA-ILVSLLSA----------CAQLGALDYGNWVYSYIQKKCIKLDSI 175 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~ 175 (511)
+..++......+..++|++++++..+. .|+.. .|+..-.. +...+.+++|...++.+.+.. |.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 333443333444458999999999875 46543 34332222 223445788999999998875 45777
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHhcCC---CCeeehHH-HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 176 LCAALIDMYAKCG--SIDLAMQVFHSYGD---KDVSAYTS-AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 176 ~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
.|..+..++...+ ++++|...++++.+ ++...|.. ....+...+.+++|+..++++...... +...|..+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 8888877777765 48899999998754 34555544 445677789999999999998876433 57788888888
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMG 327 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a 327 (511)
+...|+.++|...+....+ +.|+ ...+...+...+..+++...+... ...++...+..+...+...|+.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 9999988887666655544 1122 122334455667777777776654 2223444566667777888999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
...+.+..+.+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998763
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1e-06 Score=74.18 Aligned_cols=121 Identities=9% Similarity=-0.059 Sum_probs=73.1
Q ss_pred HHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHH
Q 010405 49 INGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALA 125 (511)
Q Consensus 49 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 125 (511)
...+...|++++|++.|+++..+++.+|..+..+|.+.|++++|.+.|++..+ .+...|+.+..+|.+.|++++|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 33455666677777777666666666666666667777777777777666542 344566667777777777777777
Q ss_pred HHHHHHHCCCC--------------CC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 126 LFREMQSLDLE--------------PN-SAILVSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 126 ~~~~m~~~~~~--------------p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
.|++....... ++ ..++..+..++...|++++|.+.+..+.+..
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66665542100 00 1334455555666666666666666655543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=1.2e-07 Score=80.73 Aligned_cols=95 Identities=13% Similarity=-0.018 Sum_probs=45.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
|+...+......|.+.|++++|+..|++. ...| ++..|..+..+|...|++++|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33333444444444445555555444443 2222 333444444445555555555555555555555555555555555
Q ss_pred HHHcCCchHHHHHHHHH
Q 010405 352 YVETLKGENAEEVRKTM 368 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m 368 (511)
|...|++++|...+++.
T Consensus 82 ~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 82 QLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55555555555555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.4e-06 Score=73.38 Aligned_cols=87 Identities=9% Similarity=-0.161 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
...+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++..+.+ +-+...|..+..++...|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3445566777777777777666666666667777777777777777777666653 335566666666666777777776
Q ss_pred HHHHHHHH
Q 010405 160 WVYSYIQK 167 (511)
Q Consensus 160 ~~~~~~~~ 167 (511)
..|++.+.
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4e-07 Score=69.89 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=62.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 010405 282 MVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 359 (511)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 345566677777777777665 3333 55567777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHh
Q 010405 360 NAEEVRKTMRK 370 (511)
Q Consensus 360 ~A~~~~~~m~~ 370 (511)
+|...+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777777665
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=5.1e-07 Score=69.22 Aligned_cols=105 Identities=11% Similarity=0.030 Sum_probs=85.5
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
-...+...|++++|+..|....+. -+.+...|..+..+|.+.|++++|+..++.. ...| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 455677888999999999988872 2345778888899999999999999998876 3334 67788888999999999
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
+++|+..++++++.+|+++..+..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999988777766553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=2.5e-06 Score=76.97 Aligned_cols=94 Identities=9% Similarity=-0.073 Sum_probs=52.0
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CccHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSL----DLEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKK----CI-KLDSIL 176 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 176 (511)
|......|...|++++|++.|.+.... +-++ -..+|..+..+|.+.|++++|...++...+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 333566677777777777777766442 1111 1346666777777777777777777665542 10 011233
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHhc
Q 010405 177 CAALIDMYAK-CGSIDLAMQVFHSY 200 (511)
Q Consensus 177 ~~~li~~y~~-~g~~~~A~~~~~~~ 200 (511)
+..+...|.. .|++++|.+.|++.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A 144 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELA 144 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 4444444433 46666666655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=9.9e-07 Score=79.74 Aligned_cols=194 Identities=8% Similarity=-0.098 Sum_probs=111.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHH
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKK----CIKL-DSILCAALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTS 210 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 210 (511)
....|...+++++|...|.++.+. +-++ -..+|..+..+|.+.|++++|.+.+++..+ .+ ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 456788888999999988887663 2122 235778888888888888888888876543 11 233445
Q ss_pred HHHHHHH-cCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHH
Q 010405 211 AIFGLAM-NGHSIEAFELFENMKS----KGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHY 279 (511)
Q Consensus 211 li~~~~~-~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~ 279 (511)
+...|.. .|++++|++.|++... .+..+. ..++..+...+...|++++|...|+++.......+. ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555543 4777777777776543 111111 234566666777777777777777776652111111 1123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHh--cCchhHHHHHHHHHhhcC
Q 010405 280 ACMVDLLGRAGLLEEAENFIASM-PMKPD------NVIWGTLLGACRV--HRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~ 338 (511)
..++..+...|+++.|...+++. ...|+ ......++.++.. .+.+++|+..|+.+.+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 34444555667777777777765 22221 1233445555443 233555665555544443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=3.4e-07 Score=77.72 Aligned_cols=116 Identities=4% Similarity=-0.256 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010405 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLL 315 (511)
Q Consensus 238 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 315 (511)
|+...+......+...|++++|+..|..+.+. -+.++..|..+..+|.+.|++++|+..|+.. .+.| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66777777888888889999999999888772 2345778888889999999999999998876 5666 466888888
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
.++...|++++|+..+++++++.|++...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8899999999999999999988776655554444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.47 E-value=2.3e-07 Score=70.59 Aligned_cols=89 Identities=11% Similarity=-0.050 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 280 ACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
-.+...+.+.|++++|...|++. ...| ++..|..+..++...|++++|+..++++++++|+++.++..|+..|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34667788999999999999987 4455 577899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 010405 358 GENAEEVRKTM 368 (511)
Q Consensus 358 ~~~A~~~~~~m 368 (511)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.3e-06 Score=71.01 Aligned_cols=117 Identities=7% Similarity=-0.106 Sum_probs=92.1
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
....|.+.|++++|...|.++.+. -+.+...|..+...|...|++++|.+.|++. ...| +...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677889999999999988872 2335778888999999999999999999887 4445 56789889999999999
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHH--HHcCCchHHHHH
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIY--VETLKGENAEEV 364 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 364 (511)
+++|...++++..+.|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988877765553 344455566544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.38 E-value=5e-05 Score=67.00 Aligned_cols=229 Identities=14% Similarity=-0.012 Sum_probs=129.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ----LGALDYGNWVYSYIQKKCIKLDSILCA 178 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (511)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666666777777777777777776655 45555556555554 446666666666666554 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccC
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC----SHLG 254 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g 254 (511)
.|...+.... ...++.+.|...+++....|.. .....+...+ ....
T Consensus 75 ~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 75 LLGNLYYSGQ---------------------------GVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTR 124 (265)
T ss_dssp HHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCC
T ss_pred cccccccccc---------------------------ccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccc
Confidence 3333332210 0123344555555555544321 1111111111 1233
Q ss_pred CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhH
Q 010405 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AGLLEEAENFIASMPMKPDNVIWGTLLGACRV----HRNAEM 326 (511)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 326 (511)
....+...+..... ..+...+..|...|.. ..+...+...++......+......|...+.. ..+.+.
T Consensus 125 ~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 125 DFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence 45555555555544 2344555566666654 34555666666655222355555555545443 568889
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVE----TLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 373 (511)
|...|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.+++..+.|.
T Consensus 201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999988864 45788888888875 3478889999988877664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.3e-06 Score=71.10 Aligned_cols=93 Identities=16% Similarity=0.017 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
+......|.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|.+..+|..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344566788999999999999987 3445 67788889999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhC
Q 010405 357 KGENAEEVRKTMRKR 371 (511)
Q Consensus 357 ~~~~A~~~~~~m~~~ 371 (511)
++++|.+.+++..+.
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=0.00057 Score=59.83 Aligned_cols=227 Identities=12% Similarity=-0.049 Sum_probs=128.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK-RSLVSWVVLISGFAQ----NGRPKEALALFREMQSLDLEPNSAILVSLL 146 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 146 (511)
|+..+..|...+.+.+++++|.+.|++..+ .+..++..|...|.. ..+...|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 466777888888999999999999999764 467777778888877 678899999998888765 444455555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHHHHHHH
Q 010405 147 SACAQ----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAM 217 (511)
Q Consensus 147 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 217 (511)
..+.. ..+.+.|...++...+.|.. .....+...+.. ......|...+..... .+..++..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 54443 45778888888888887632 222233333332 2234444444443222 233344444444332
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cCCHH
Q 010405 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AGLLE 293 (511)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 293 (511)
.. ....+...+..++....+ . .+......|...|.. ..+++
T Consensus 155 ~~-------------------------------~~~~~~~~~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 155 GR-------------------------------GTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp TS-------------------------------SSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CC-------------------------------Ccccccccchhhhhcccc-c---cccccccchhhhcccCcccccchh
Confidence 10 012333344444444433 1 123333333333333 34566
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCC
Q 010405 294 EAENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 294 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 339 (511)
+|...|+.....-++..+..|...|.. ..+.++|.+.|+++.+..+
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 666666555212244445455554443 3366777777777766544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=8.5e-06 Score=66.80 Aligned_cols=84 Identities=6% Similarity=-0.124 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
+|+.+..+|.+.|++++|...++.. ...| ++..|..+..++...|++++|+..|+++++++|+++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5677888999999999999999886 4455 7778888999999999999999999999999999999988888887766
Q ss_pred CCchHH
Q 010405 356 LKGENA 361 (511)
Q Consensus 356 g~~~~A 361 (511)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.8e-06 Score=64.52 Aligned_cols=104 Identities=13% Similarity=-0.076 Sum_probs=77.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL---EEAENFIASM-PMKPDN---VIWGTLLG 316 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~ 316 (511)
..+++.+...+++++|.+.|+...+. -+.++.++..+..++.+.++. ++|+.+++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677777888888888888888772 234567777788888765544 4688888876 444433 26777888
Q ss_pred HHHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
+|...|++++|++.++++++++|++..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 899999999999999999999998876655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0024 Score=57.46 Aligned_cols=274 Identities=11% Similarity=0.061 Sum_probs=123.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHH
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 124 (511)
-..+..-|.+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+. .+..+|..+...+.+..+..-|
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la- 88 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA- 88 (336)
T ss_dssp ------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHH-
Confidence 33444455566666666666654432 444555556666666666655543 2444566666666655544332
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 010405 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK- 203 (511)
Q Consensus 125 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~- 203 (511)
.+.......+......++..|-..|.+++...+++..... -+.+...++-++..|++.+ .++-.+.+......
T Consensus 89 ----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y 162 (336)
T d1b89a_ 89 ----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRV 162 (336)
T ss_dssp ----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTS
T ss_pred ----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhccccC
Confidence 1112223334445555666666666666666666655432 1334555666666666643 23333333332211
Q ss_pred ----------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCC
Q 010405 204 ----------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273 (511)
Q Consensus 204 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (511)
...-|..++-.|.+.|++++|+.+.-. ..|+..-....+..+.+.++.+...+......+ . .
T Consensus 163 ~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~-~--~ 234 (336)
T d1b89a_ 163 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLE-F--K 234 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-H--C
T ss_pred CHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHH-c--C
Confidence 111234444445555555555544321 122222233334444555555544444443333 1 1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
| ...+.|+......-+..+..+.++ +.+++......++.....+ +..+...|..+|.
T Consensus 235 p--~~i~~lL~~v~~~~d~~r~V~~~~-------------------k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyi 291 (336)
T d1b89a_ 235 P--LLLNDLLMVLSPRLDHTRAVNYFS-------------------KVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFI 291 (336)
T ss_dssp G--GGHHHHHHHHGGGCCHHHHHHHHH-------------------HTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhccCCCHHHHHHHHH-------------------hcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHh
Confidence 2 223334444433344444444333 3444444445554443322 2346667777777
Q ss_pred HcCCchHHHH
Q 010405 354 ETLKGENAEE 363 (511)
Q Consensus 354 ~~g~~~~A~~ 363 (511)
..++++.-.+
T Consensus 292 e~~d~~~l~~ 301 (336)
T d1b89a_ 292 TEEDYQALRT 301 (336)
T ss_dssp HTTCHHHHHH
T ss_pred CcchhHHHHH
Confidence 7776544333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3e-05 Score=63.41 Aligned_cols=63 Identities=11% Similarity=-0.104 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.+|..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 356677788999999999999999999999999999999999999999999999999998763
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.06 E-value=2.1e-05 Score=59.27 Aligned_cols=91 Identities=12% Similarity=-0.077 Sum_probs=68.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
+..+...+.+.|++++|+..|++..... +-+..+|..+..++...|++++|...++++++.. |.+..++..+...|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 3445667778888888888888877753 2257777888888888888888888888887764 4467777778888888
Q ss_pred cCCHHHHHHHHHh
Q 010405 187 CGSIDLAMQVFHS 199 (511)
Q Consensus 187 ~g~~~~A~~~~~~ 199 (511)
.|++++|.+.|++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8888888877765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=5.6e-05 Score=60.49 Aligned_cols=62 Identities=11% Similarity=-0.076 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667778889999999999999999999999999999999999999999999999988775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=3.7e-05 Score=62.68 Aligned_cols=92 Identities=5% Similarity=-0.085 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
.|+.+..+|.+.|++++|+..++.. ...| +...|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5667888899999999999999886 3334 6778888999999999999999999999999999988888888777666
Q ss_pred CCchH-HHHHHHHHH
Q 010405 356 LKGEN-AEEVRKTMR 369 (511)
Q Consensus 356 g~~~~-A~~~~~~m~ 369 (511)
+...+ ..+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 65543 444544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=7.8e-05 Score=60.74 Aligned_cols=85 Identities=6% Similarity=-0.112 Sum_probs=69.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...|..+..+|.+.|++++|+..+++. .+.| ++..|..+..++...|++++|+..|+++++++|+++.++..|..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 556777888999999999999999887 5556 66788889999999999999999999999999999888888777665
Q ss_pred HcCCchH
Q 010405 354 ETLKGEN 360 (511)
Q Consensus 354 ~~g~~~~ 360 (511)
+.....+
T Consensus 157 ~l~~~~~ 163 (169)
T d1ihga1 157 KIKAQKD 163 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.6e-05 Score=61.58 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch-------hHHHHH
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG-------RYILLS 349 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 349 (511)
+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 456777888999999999998876 3344 5778888889999999999999999999998887654 555677
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010405 350 NIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999976653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.1e-05 Score=58.52 Aligned_cols=96 Identities=6% Similarity=-0.082 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH---HHHHHHHHhcCCCCe-----eehHHHHHH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI---DLAMQVFHSYGDKDV-----SAYTSAIFG 214 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~-----~~~~~li~~ 214 (511)
..+++.+...+++++|++.|+..++.+ +.++.++..+..++.+.++. ++|+++|+++...+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666666777777777777777764 44566666677666654443 346666666554221 245556666
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSI 241 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (511)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 6667777777777777666 345443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.93 E-value=8e-05 Score=59.51 Aligned_cols=125 Identities=6% Similarity=-0.203 Sum_probs=88.4
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 286 (511)
.+......+.+.|++.+|+..|.+.+..- |... ...-..... ... .....+|..+...|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~---~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLD---KKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHH---HHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHH---hhh-----hHHHHHHhhHHHHH
Confidence 45556677888888888888888877531 1000 000000000 000 01234677788999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 287 GRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 287 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
.+.|++++|++.++.. ...| +...|..+..++...|++++|+..|+++++++|+++.+...+..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999886 4455 6789999999999999999999999999999999987776665543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=4.8e-05 Score=62.57 Aligned_cols=117 Identities=9% Similarity=-0.065 Sum_probs=81.5
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchh
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL-EEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 325 (511)
.......|++++|.+.|......+.-.+-... ...... .++.. ++. .....+..+...+...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~-l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATA-LVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHH-HHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHH-HHH----HHHHHHHHHHHHHHHCCCch
Confidence 34567788888888888888763211110000 000000 01111 111 12346777888999999999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccC
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK-----RKIKRA 376 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~ 376 (511)
+|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999998754 466543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0096 Score=53.41 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=137.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCC
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS 88 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 88 (511)
||..--..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. .+..+|..+...+.+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcH
Confidence 4444555677788899999999999986654 888899999999999999998765 466788888888888887
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
...|... ......+......++..|-..|.+++...+++..... -.++...++.++..|++.+. ++ +.+.+...
T Consensus 85 ~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k---l~e~l~~~ 158 (336)
T d1b89a_ 85 FRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK---MREHLELF 158 (336)
T ss_dssp HHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH---HHHHHHHH
T ss_pred HHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH---HHHHHHhc
Confidence 7665332 2222234455567899999999999999999877543 25577778888888887643 33 33333332
Q ss_pred CCCccHH----------HHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 010405 169 CIKLDSI----------LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238 (511)
Q Consensus 169 ~~~~~~~----------~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (511)
+...|.. .|.-++-.|.+.|++++|..+.-.-. +++......+..+.+..+++...++.....+. .|
T Consensus 159 s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p 235 (336)
T d1b89a_ 159 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP 235 (336)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG
T ss_pred cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH
Confidence 2122211 12334444555555555543322111 12333345566677777776666655554442 23
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
...+.++......-+..+..+.+.
T Consensus 236 --~~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 236 --LLLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp --GGHHHHHHHHGGGCCHHHHHHHHH
T ss_pred --HHHHHHHHHhccCCCHHHHHHHHH
Confidence 233445555554445544444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=9.1e-05 Score=60.31 Aligned_cols=64 Identities=6% Similarity=-0.178 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3446777888899999999999999999999999999999999999999999999999998886
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.80 E-value=0.00027 Score=57.31 Aligned_cols=62 Identities=8% Similarity=-0.090 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.|..+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|.+.+++..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999999999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=1.8e-06 Score=84.40 Aligned_cols=220 Identities=9% Similarity=0.002 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 122 EALALFREMQSLDLEPN-SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS-ILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 122 ~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
+|.+.|++..+. +|| ...+..+..++...+++++| +++++... |+. ...+...... + ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence 677888877663 444 34556666677777777655 56665542 221 1111111111 1 112344455544
Q ss_pred cCC----CCeeehHHHHHHH--HHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC
Q 010405 200 YGD----KDVSAYTSAIFGL--AMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272 (511)
Q Consensus 200 ~~~----~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 272 (511)
..+ ++..-......++ ...+.++.|+..+....+ +.| +...+..+...+...|+.+.|...+..... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~ 149 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---Y 149 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---C
Confidence 332 1111111111111 123334444444433322 233 344556666667777777777776665544 1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 273 KPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
.| ...+..+.+.+...|++++|...|++. ...|+ ...|+.|...+...|+..+|...|.+++...|+.+.++..|..
T Consensus 150 ~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 150 IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 11 245667777777888888888877776 44453 4577777777777888888888888888877777777777777
Q ss_pred HHHHcC
Q 010405 351 IYVETL 356 (511)
Q Consensus 351 ~~~~~g 356 (511)
.|.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 765543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00019 Score=55.20 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=39.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
+..+...|.+.|++++|+..|.+.++.+ +.+...+..+..+|...|++++|.+.+.++++.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 4455666777777777777777766653 335666666677777777777777777666653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=1.5e-05 Score=77.62 Aligned_cols=258 Identities=9% Similarity=-0.067 Sum_probs=143.7
Q ss_pred HHHHHHhhCCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010405 91 DACRVFNQMPK--RS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA-ILVSLLSACAQLGALDYGNWVYSYIQ 166 (511)
Q Consensus 91 ~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 166 (511)
+|.+.|++..+ || ..+|..+..+|...|++++| |+++... .|+.. .... ...+.+ ..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw~-~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV-EQDLWN-HAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHHH-HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH-HHHHHH-HHHHHHHHHHHHhc
Confidence 56677777643 43 45677788889999988876 6776653 23211 1111 111111 12345666666666
Q ss_pred HcCCCccHHHH--HHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 010405 167 KKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241 (511)
Q Consensus 167 ~~~~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (511)
+....++..-. ..+...+...+.++.|+..+....+ ++...|..+...+.+.|+.++|...+.+.... .| ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence 54433332221 1122233445677788777776543 45667888888999999999999988776542 12 35
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-P-MKPDNVIWGTLLGAC 318 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~ 318 (511)
++..+...+...|++++|...|.+..+ +.|+ ...|+.|...+...|+..+|...|.+. . ..|-..++..|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 777889999999999999999999987 3454 689999999999999999999999876 3 346778888888776
Q ss_pred HhcCchhHHHHHHHHHhhcCCC---CchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQN---HDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
.+..+...+. ...+. -...+..+...+.....+++..++.+.+
T Consensus 231 ~~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 231 SKALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 5443221110 01111 1224455666667777777776665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=0.00014 Score=57.41 Aligned_cols=127 Identities=12% Similarity=0.093 Sum_probs=68.5
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHchhhcCCCC-CHhHHHHHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL----------GWVEKGFYYFHSMFDVHGIKP-ELDHYACMV 283 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 283 (511)
|-+.+.+++|+..|+...+.. +-+...+..+..++... +.+++|+..|+++.+ +.| +...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 344555666777777666542 22344555555555432 233455555555554 223 244444454
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
.+|...|++. ++... ..++++.|.+.|+++++++|++...+..|... ..|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 4444433210 11111 11246889999999999999887666555543 45666
Q ss_pred HHHHHHhCCC
Q 010405 364 VRKTMRKRKI 373 (511)
Q Consensus 364 ~~~~m~~~g~ 373 (511)
++.+..+.|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 6666666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.47 E-value=0.00029 Score=56.27 Aligned_cols=88 Identities=13% Similarity=-0.059 Sum_probs=62.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC--------
Q 010405 283 VDLLGRAGLLEEAENFIASM----PMKPD----------NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN-------- 340 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-------- 340 (511)
...+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445556666666666554 21121 346777778888888888888888888874321
Q ss_pred ---CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 341 ---HDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 341 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...++..++.+|...|++++|.+.+++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123577889999999999999999998765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00061 Score=49.05 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM----P----MKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
..+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 33445667777777777777777654 1 1222 4578888899999999999999999999999999888776
Q ss_pred HHH
Q 010405 348 LSN 350 (511)
Q Consensus 348 l~~ 350 (511)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.31 E-value=9.3e-05 Score=58.49 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=42.0
Q ss_pred CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC-----------chHHHHHHHHHHh
Q 010405 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK-----------GENAEEVRKTMRK 370 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 370 (511)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 456889999999999999999999999999988764 5778888877765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.28 E-value=0.00025 Score=62.14 Aligned_cols=125 Identities=14% Similarity=0.021 Sum_probs=74.6
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHH
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEE 294 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 294 (511)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...|+...+ ..|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 34677788888888777753 22566777777778888888888888887776 3444 3444444444444444444
Q ss_pred HHHHHHhC--CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 295 AENFIASM--PMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 295 A~~~~~~~--~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
+..-.... ...|+. ..+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33322221 112322 222333444667788888888888887777766544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.16 E-value=0.0019 Score=52.66 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=44.7
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh----hcCCCCCHhH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD----VHGIKPELDH 278 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 278 (511)
.+..+...+...|++++|+..++++.... +-+...|..++.++...|+.++|++.|+++.+ ..|+.|+..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34556666666777777777777766642 22566677777777777777777777766533 2466666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.07 E-value=0.0025 Score=50.51 Aligned_cols=92 Identities=10% Similarity=-0.066 Sum_probs=55.8
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCC----------HhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC----
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPE----------LDHYACMVDLLGRAGLLEEAENFIASM--------PMKPD---- 307 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~---- 307 (511)
....|++++|+..|.+..+...-.|+ ...|+.+..+|...|++++|.+.+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 33445555555555555442221121 235666677777777777776665553 12222
Q ss_pred -HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 308 -NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 308 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
...+..+..++...|++++|+..|++++++.|..
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 1245667788999999999999999999865543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.01 E-value=0.00026 Score=61.94 Aligned_cols=121 Identities=9% Similarity=0.061 Sum_probs=84.1
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMG 327 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 327 (511)
....|++++|+..+++..+ --+.+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 33456899999999999999999999999987 45564 34555444444433333332
Q ss_pred HHHHHHHhh-cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 328 QRIGNMLIE-SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 328 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..-...... ..|++...+...+..+...|+.++|.+.+++..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 221111111 234334455566788899999999999999887643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.003 Score=45.18 Aligned_cols=64 Identities=8% Similarity=-0.196 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC-------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH-------DGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
...+-.+...+.+.|+++.|...++++++..|.+ ..++..|+.+|.+.|++++|.+.+++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445567778999999999999999999865433 357889999999999999999999998863
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.38 E-value=0.055 Score=39.59 Aligned_cols=141 Identities=9% Similarity=0.029 Sum_probs=98.1
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 294 (511)
+...|..++..+++.+.... .+..-|+.++.-....-+-+-..+.++.+-+.+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34567777777777777653 2455666666666666666666677766655333322 334444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 295 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
...-+-.+. .+......-+.....+|.-+.-.++++.+.+.+..++.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333333 244445566778888999999999999988866667889999999999999999999999999999975
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.56 Score=43.47 Aligned_cols=295 Identities=11% Similarity=0.020 Sum_probs=144.0
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhHHHHHHHHH--HHcCChHHHHHHHccCCCC--ChhHHHHHHHHHHhcCCHHHHHHH
Q 010405 20 FYSVCGRVRDARWVFDESDDLDVVSWNSMINGY--VRNGEILEGLKLFDKMPQR--NDVSWNSILGGLVRFGSVDDACRV 95 (511)
Q Consensus 20 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~ 95 (511)
-..+.|+.+.+.++...+..--...|-..-..- .......+...++++-+.. ....-...+..+.+.++++.....
T Consensus 15 ~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~ 94 (450)
T d1qsaa1 15 QAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAF 94 (450)
T ss_dssp HHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHh
Confidence 345678999999888887531123333222211 2234566677766665441 112223445667888999887776
Q ss_pred HhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 010405 96 FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175 (511)
Q Consensus 96 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 175 (511)
+..-+ .+...-.....+..+.|+..+|...+..+-..|. ........+...+...|.+ +..
T Consensus 95 ~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~l-----------------t~~ 155 (450)
T d1qsaa1 95 SPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ-----------------DPL 155 (450)
T ss_dssp CCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS-----------------CHH
T ss_pred ccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCC-----------------CHH
Confidence 65432 2444444667778889999999888877765542 2222333333333333222 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---------------------------CeeehHHHHHHHHH--cCChHHHHH
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGDK---------------------------DVSAYTSAIFGLAM--NGHSIEAFE 226 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---------------------------~~~~~~~li~~~~~--~g~~~~A~~ 226 (511)
.+-.-+......|+...|..+...+... +......+..++.+ ..+.+.|..
T Consensus 156 ~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~ 235 (450)
T d1qsaa1 156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARL 235 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHH
Confidence 2222223333334444444444333221 11111122222222 235556666
Q ss_pred HHHHHHhCC-CCCCHH-HHH-HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 010405 227 LFENMKSKG-ISPDSI-SYI-AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303 (511)
Q Consensus 227 ~~~~m~~~g-~~p~~~-t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 303 (511)
++....... ..++.. ... .+.......+..+.+..++..... . ..+.......+....+.+++..+...++.++
T Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~ 312 (450)
T d1qsaa1 236 MIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGLNTWLARLP 312 (450)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc-c--ccchHHHHHHHHHHHHcCChHHHHHHHHhcC
Confidence 666554422 111111 111 111222334555666665555543 1 2233333334444555667777777777764
Q ss_pred CCCCH-HHH-HHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 304 MKPDN-VIW-GTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 304 ~~p~~-~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
..|.. .-| -=+..++...|+.+.|...|..+..
T Consensus 313 ~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 33311 111 2234556667777777777776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.26 E-value=0.1 Score=39.30 Aligned_cols=59 Identities=17% Similarity=0.028 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
++++|+.+|++..+.| +......|. .....+.++|...+++..+.| ++..+..|..+|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhh
Confidence 4556666666665554 222222222 122345566666666666554 3334444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.60 E-value=0.21 Score=37.47 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=56.1
Q ss_pred CHHHHHHHHhhCCC-CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHH
Q 010405 88 SVDDACRVFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ----LGALDYGNWVY 162 (511)
Q Consensus 88 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~ 162 (511)
++++|.+.|++..+ .+...+..|.. ....+.++|+++|++..+.| +......|...|.. ..+.++|.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 45556666655432 23333333332 23456777777777776665 44555555555543 34567777777
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFH 198 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~ 198 (511)
++..+.| ++.....|..+|.. ..+.++|.++|+
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~ 119 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFE 119 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence 7777765 33444455555554 234444444444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=2.4 Score=38.96 Aligned_cols=329 Identities=9% Similarity=-0.052 Sum_probs=162.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----C----------------ChhHH
Q 010405 18 IQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ-----R----------------NDVSW 76 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~----------------~~~~~ 76 (511)
+..+.+.++++.....|..- +.++..-.....+....|+..+|.+.+...-. | +...+
T Consensus 79 l~~L~~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~ 157 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHH
Confidence 34455556666555544322 22344344555666667777666665543321 1 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--cCC
Q 010405 77 NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ--LGA 154 (511)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~ 154 (511)
-.-+......|+...|..+...++..........+..... +..+...... ..++......+..+..+ ..+
T Consensus 158 ~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~l~rla~~d 229 (450)
T d1qsaa1 158 LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGATDFTRQMAAVAFASVARQD 229 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CCCChhhhHHHHHHHHHHhccC
Confidence 2233344455666666666666554443344444443322 2222222111 12233333333333333 246
Q ss_pred HHHHHHHHHHHHHcCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHH
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILC---AALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
.+.+...+............... ..+.......+..+.+...+..... .+.....-.+......+++..+...+.
T Consensus 230 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~ 309 (450)
T d1qsaa1 230 AENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLA 309 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66777777666554322111111 1111222234555566555544332 222222223334455677777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCC-
Q 010405 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI-ASMPMKPD- 307 (511)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~- 307 (511)
.|.... .-...-.--+..+....|+.+.|..+|..+.. .++ -|..|... +.|..- .+- ...+..+.
T Consensus 310 ~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~---~~~~~~~~~~~~~ 377 (450)
T d1qsaa1 310 RLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY---ELKIDKAPQNVDS 377 (450)
T ss_dssp HSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC---CCCCCCCCSCCCC
T ss_pred hcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC---CCCcCCCCccHHH
Confidence 764321 11223333466777788888888888887754 233 33333221 122100 000 00011111
Q ss_pred HHHH---HHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 308 NVIW---GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 308 ~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
...- ..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+..
T Consensus 378 ~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 1111 122345778899999999998887643 34677788899999999999998877654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.16 E-value=1.5 Score=31.88 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.+..+..+.+.|+-++-.++++.+.+. -+|++.....+..||.+.|...++-+++.++-+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344455556666666666666664442 355555555666666666666666666666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.35 Score=35.45 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 323 NAEMGQRIGNMLIESDQNHD-GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+.++|+.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44566666666666665443 4556666667777777777777666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.64 E-value=2.1 Score=31.04 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=42.5
Q ss_pred CHhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 275 ELDHYACMVDLLGRAG---LLEEAENFIASM-PMKP-DN-VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
++.+--...-++.+.. +.+++..++++. ...| +. ..+..|.-+|.+.|++++|.+.++++++++|++..+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 3334333444444433 345666666655 2223 32 355566677888888888888888888888877544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.64 E-value=1.4 Score=30.30 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
+.-++.+-+..+....+.|++....+.+.||.+.+++..|.++|+..+.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3446667777777778899999999999999999999999999998887444 34556766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.76 E-value=5.5 Score=27.24 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+.-++.+-++.+...++.|++....+.+.||.+.+++..|.++++-++... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 344556666777777888999999999999999999999999998887653 233446655543
|