Citrus Sinensis ID: 010458
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY07 | 532 | Pentatricopeptide repeat- | yes | no | 0.931 | 0.892 | 0.648 | 0.0 | |
| Q8LPS6 | 524 | Pentatricopeptide repeat- | no | no | 0.8 | 0.778 | 0.365 | 3e-79 | |
| O22714 | 491 | Pentatricopeptide repeat- | no | no | 0.843 | 0.875 | 0.344 | 2e-72 | |
| Q3E911 | 491 | Pentatricopeptide repeat- | no | no | 0.9 | 0.934 | 0.348 | 1e-71 | |
| Q84JR3 | 492 | Pentatricopeptide repeat- | no | no | 0.945 | 0.979 | 0.316 | 2e-67 | |
| Q9SKU6 | 490 | Pentatricopeptide repeat- | no | no | 0.852 | 0.887 | 0.357 | 3e-65 | |
| Q93WC5 | 502 | Pentatricopeptide repeat- | no | no | 0.854 | 0.868 | 0.309 | 1e-60 | |
| Q9FZ24 | 537 | Pentatricopeptide repeat- | no | no | 0.968 | 0.919 | 0.291 | 6e-59 | |
| Q94B59 | 409 | Pentatricopeptide repeat- | no | no | 0.594 | 0.740 | 0.377 | 3e-53 | |
| Q9C7F1 | 566 | Putative pentatricopeptid | no | no | 0.854 | 0.770 | 0.306 | 4e-41 |
| >sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/475 (64%), Positives = 389/475 (81%)
Query: 36 GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCE 95
GGRDTLG RLLSLVY KRSA +T+RKWKEEGH+V KYELNRIVRELRK+KRYKHALE+CE
Sbjct: 58 GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICE 117
Query: 96 WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
WM +Q DIKL +GDYAVHLDLISKIRGL+SAE FFE++PD+MRG C++LLHSYVQNK
Sbjct: 118 WMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKL 177
Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW 215
S +AEAL EKM ECGFLK LPYNHML++YIS GQ +KVP +++ELK TSPD+VTYNLW
Sbjct: 178 SDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTSPDIVTYNLW 237
Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
L A AS ND E AEK +L+ K+ K++PDW++YS LT+LY K + EKA LKEMEK
Sbjct: 238 LTAFASGNDVEGAEKVYLKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVS 297
Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
+KNRVAY+SL+SL+ N+G KD V WKK+ S F KMNDAEY +IS++VKLGEFE+A+
Sbjct: 298 KKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKG 357
Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
+YDEWES+SGTGD R+PN++LA Y+NR+++ + E FY R+V KGI P Y+TWE+LTW YL
Sbjct: 358 LYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYL 417
Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
K+ MEKVL+CF KAI SV+KW + RL+ A +LEEQG++ GAE L+ L+ AG+V+T
Sbjct: 418 KRKDMEKVLDCFGKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNT 477
Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
++YNSLLRTYAKAG+M LI+ ERM KDNV++D ET++++++TS+M V+E+SS S
Sbjct: 478 QLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQMRVTEISSTIS 532
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/413 (36%), Positives = 248/413 (60%), Gaps = 5/413 (1%)
Query: 55 AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVH 113
AA + +W++ G + K+EL R+V+ELRK KR ALEV +WM + + +L + D A+
Sbjct: 83 AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQ 142
Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
LDLI K+RG+ AE FF LP+ + +LL++YV+ K +AEAL+ M + G+
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202
Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
PLP+N M+ LY++ + DKV M+ E+K K+ D+ +YN+WL++C S E E +
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262
Query: 233 LELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
++K I P+W ++ST+ ++YIKM EKA L+++E R +NR+ Y LLSLY +
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322
Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
+G K E+ R+W S+ + + Y ++SSLV++G+ E AE +Y+EW + + DPR+
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382
Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
PN+L+ AY+ +QLE AE ++ +V G KP +TWE+L G+ +K + + L C + A
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442
Query: 412 GS--VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
+ W P +++ + EE+ D+ E +L LR +G + + Y +L+
Sbjct: 443 SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 248/438 (56%), Gaps = 8/438 (1%)
Query: 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
V K+E+ +++LR Y AL++ E ME + K VS D A+HLDL++K R +++ EN
Sbjct: 53 VFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVS-DQAIHLDLVAKAREITAGEN 111
Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
+F +LP+ + T +LL+ Y + + +AE L+ KM E + YN ++ LY
Sbjct: 112 YFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKT 171
Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
G+ +KVP M+QELK +N PD TYN+W+ A A+ ND E+ E+ + ++ PDW +
Sbjct: 172 GETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTT 231
Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
YS + S+Y+ L +KA L+E+E + +++ AY L++LY +G EV RIW+ +
Sbjct: 232 YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLR 291
Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
K ++ Y +I LVKL + AE ++ EW++ T D R+ N+L+ AY ++
Sbjct: 292 LAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQ 351
Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
A + +G K TWE+ Y+K G M + LEC KA+ G KW+P
Sbjct: 352 KANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPE 411
Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
+ A + E++ D++GAE+LL L+N ++ EI+ L+RTYA AGK + R++
Sbjct: 412 TVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKM 471
Query: 482 DNVQMDAETQKVLKITSE 499
+NV+++ T+K+L S+
Sbjct: 472 ENVEVNEATKKLLDEVSQ 489
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 255/468 (54%), Gaps = 9/468 (1%)
Query: 23 ITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELR 82
+++L ++ R++L + +L +RS +++ + GH V EL I + L
Sbjct: 23 VSSLADGSDTSSVANRNSL-KEILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLI 81
Query: 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK---MRG 139
+ RY AL++ EWME Q DI+ D A+ LDLI K GL E +FE L MR
Sbjct: 82 RSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRV 141
Query: 140 PDTCS-ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
+ LL +YV+NK EAEALMEK++ GFL P P+N M+ LY ++GQ +KV ++
Sbjct: 142 AKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVV 201
Query: 199 QELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIK 256
+K N P +V++YNLW+ AC + E + E+ K ++ W S TL ++YIK
Sbjct: 202 SMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIK 261
Query: 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316
EKA L++ EK R NR+ Y L++LY ++G K+ V+R+W+ S+ +++
Sbjct: 262 SGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVN 321
Query: 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376
Y CV+SSLVK G+ E+AE ++ EWE+ D RV N+LL AY+ ++ AES + ++
Sbjct: 322 YICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVL 381
Query: 377 TKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQ 434
+G P Y TWE+L G++K MEK ++ + +R+ W P H ++ A E++
Sbjct: 382 ERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKE 441
Query: 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKD 482
I+ A + L G S +Y LLR + A + I E M+ D
Sbjct: 442 EKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLD 489
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/503 (31%), Positives = 263/503 (52%), Gaps = 21/503 (4%)
Query: 2 FLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRK 61
LR + A L A+R + T K TTL ++ L K S ++
Sbjct: 3 ILRRIPANLIASRYYYTNRVKKTTLY---------------SKISPLGDPKSSVYPELQN 47
Query: 62 WKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121
W + G V EL RIV +LR+ KR+ HALEV +WM ++AVHLDLI ++
Sbjct: 48 WVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVY 107
Query: 122 GLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181
G +AE +FENL ++ + T ALL+ YV+ + ++ EKM E GF+ L YN++
Sbjct: 108 GFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNI 167
Query: 182 LNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTK 239
+ LY + GQ +KVP++L+E+K+ N +PD +Y + + A + D E ++ ++
Sbjct: 168 MCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQD 227
Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
I DW +Y+ YI ++A LK E R +K+ Y+ L++LY +G K EVL
Sbjct: 228 ITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVL 287
Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
R+W + + + +Y V+ SLVK+ +AE + EW+S D RVPN ++ Y
Sbjct: 288 RLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGY 347
Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG---SVRK 416
I ++ E AE+ L +G +WEL+ Y +KG +E +C K A+G RK
Sbjct: 348 IGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRK 407
Query: 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPL-II 475
W P L+T+ + + ++G + E + +LRN V+ ++Y++L++ + G + +
Sbjct: 408 WRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTL 467
Query: 476 VERMQKDNVQMDAETQKVLKITS 498
++RM+ D +++D ET +L S
Sbjct: 468 LQRMKDDKIEIDEETTVILSTRS 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 244/450 (54%), Gaps = 15/450 (3%)
Query: 39 DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
DTL RR+ S + W ++G+ V EL+ I++ LRK R+ HAL++ +WM
Sbjct: 38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMS 97
Query: 99 LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
++ GD A+ LDLI+K+ GL AE FFE +P + R ALL+ Y K +
Sbjct: 98 EHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHK 157
Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLA 217
AE + ++M E GFLK LPYN MLNLY+ G+ V ++L+E++ T PD+ T N L
Sbjct: 158 AEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLH 217
Query: 218 ACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-C 275
A + +D E EK + + + + DW +Y+ + YIK L EKA L++ E+
Sbjct: 218 AYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNA 277
Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN---DAEYTCVISSLVKLGEFEK 332
+K + AY L+S Y G K+EV R+W SL+ +++ + Y VIS+L+K+ + E+
Sbjct: 278 QKRKHAYEVLMSFYGAAGKKEEVYRLW----SLYKELDGFYNTGYISVISALLKMDDIEE 333
Query: 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392
E I +EWE+ D R+P++L+ Y + +E AE N LV K +TWE L
Sbjct: 334 VEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLAL 393
Query: 393 GYLKKGQMEKVLECFKKAIG-SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
GY G+MEK +E +K+AI S W P ++ + + LE Q D++G +L L G
Sbjct: 394 GYKMAGKMEKAVEKWKRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERG 453
Query: 452 HVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
H+S Y+ LL AG + IV+ M K
Sbjct: 454 HIS---YDQLLYDMNGAG-LSWKIVDAMGK 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 244/440 (55%), Gaps = 4/440 (0%)
Query: 58 TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
T+ ++ EG V K++L R ++LRK ++ + ALE+ EWME + +I D+A+ L+LI
Sbjct: 59 TLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERK-EIAFTGSDHAIRLNLI 117
Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
+K +GL +AE +F +L D ++ T +LL+ Y K+ +A+A E M + + LP
Sbjct: 118 AKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLP 177
Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
+N+++ +Y+ GQ +KVP ++ +K K+ +P +TY++W+ +C S D + EK E+K
Sbjct: 178 FNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMK 237
Query: 237 -KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
+ + W +++ L ++YIK+ L KA LK +E R Y L++LYT +
Sbjct: 238 AEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANA 297
Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
EV R+W + + +N++ Y ++ +L KL + + + ++ EWES T D R+ N+
Sbjct: 298 SEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVA 357
Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSV 414
+++Y+ +N E AE+ +N + K +LL LK Q + L+ F+ A+
Sbjct: 358 ISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQD 417
Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI 474
+ W LI++ + EE D+DGAE TL +S+E Y L++TY AGK
Sbjct: 418 KNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPD 477
Query: 475 IVERMQKDNVQMDAETQKVL 494
+ +R+++ + +D E + +L
Sbjct: 478 MKKRLEEQGILVDEEQECLL 497
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 150/514 (29%), Positives = 258/514 (50%), Gaps = 20/514 (3%)
Query: 1 MFLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLG------------RRLLSL 48
+F + + A V S AA + +++ G R ++ ++L L
Sbjct: 21 VFAPASATGIVEASVSSPAAANVVEASVSSPAAENGVRTSVAAPTVASRQRELYKKLSML 80
Query: 49 VYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108
+ A T+ ++ EG TV K +L R + LRK +R +HA E+ +WME + +
Sbjct: 81 SVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWME-KRKMTFSVS 139
Query: 109 DYAVHLDLISKIRGLSSAENFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMS 167
D+A+ LDLI K +GL +AEN+F NL P T AL++ Y + +A+A E M
Sbjct: 140 DHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMD 199
Query: 168 ECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKE 226
E F+ LP+N+M+++Y+ Q +KVP ++ +K + SP VTY++W+ +C S ND +
Sbjct: 200 ELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLD 259
Query: 227 TAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
EK E+ K ++ W ++S L ++Y K L EKA + LK ME++ NR ++ L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319
Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
+SLY + EV R+W+ + ++N+ Y ++ ++ KLG+ + + I+ EWES
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379
Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
D R+ NI + Y+ N E AE + + K P +LL L+ + + ++
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439
Query: 406 CFKKAIGSV----RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461
+ A+ +W L++ + E+ D+DGAE L N + +E L
Sbjct: 440 HLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFL 499
Query: 462 LRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLK 495
++TYA A K + ER+ + +++ E Q +LK
Sbjct: 500 IKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 179/307 (58%), Gaps = 4/307 (1%)
Query: 38 RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
+D L R+ L KRSA + KW EG+ + EL I +ELR+ +RYKHALEV EWM
Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113
Query: 98 ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
+ K+ DYA +DLISK+ G+ +AE +FE L + +T ++LLH+Y +K++
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173
Query: 158 EAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
AEAL +++ E L + YN M+ LY+S GQ++KVP++++ LK K SPD+ TYNLW
Sbjct: 174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233
Query: 216 LAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLK-EMEKR 273
L++CA+ + + K E++ + W+ Y LTS+YI A +TL E EK
Sbjct: 234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293
Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
++ + Y L+ L+T +G K + +IWK + + ++ Y CV+SS + LG +A
Sbjct: 294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353
Query: 334 ENIYDEW 340
E I +W
Sbjct: 354 EEIIHQW 360
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 146/476 (30%), Positives = 233/476 (48%), Gaps = 40/476 (8%)
Query: 53 RSAAI--TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110
R+A I + +W+++G+ V+ + I+++LR + AL+V EWM + L+ D+
Sbjct: 48 RNAQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDF 107
Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSEC 169
A L LI + GL AE FFE++P RG ++LL+SY ++ K+ +AEA +KM +
Sbjct: 108 AARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDL 167
Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETA 228
G L P+PYN M++LY + +KV ++L E+K N D VT N L ++ D
Sbjct: 168 GLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEM 227
Query: 229 EKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLL 286
EK + + I +W + + Y++ KA L+ E+ +K+ + AY L+
Sbjct: 228 EKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLM 287
Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
LY G ++EVLR+WK S + ++ Y VI SL+K+ + AE IY WES+
Sbjct: 288 KLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLE 347
Query: 347 GDPRVPNILLAAYINRNQLEMAESFYN------RLVTKGIKPCYTTWELLTWGYLKKGQM 400
D R+P +L + Y +R E AE N R + K + P L WG K
Sbjct: 348 FDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPL-----LEQWGDQMKPSD 402
Query: 401 EKVL-------ECFKKAIGSVRKWVPDHRLIT------AAYNKLEEQGDIDGAEHLLVTL 447
K L + F KA+ V +W+ + ++ AA L E ++ G E
Sbjct: 403 LKCLIKNLRDSKQFSKAL-QVSEWMGEKQVCNLYLEDYAARLYLTE--NVLGLEEAEKYF 459
Query: 448 RNAGHVSTE--IYNSLLRTYAKA----GKMPLIIVERMQKDNVQMDAET-QKVLKI 496
N + +Y +LL +YAK+ G M I+ M+++NV D T VLK+
Sbjct: 460 ENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKV 515
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| 297737393 | 529 | unnamed protein product [Vitis vinifera] | 0.998 | 0.962 | 0.699 | 0.0 | |
| 359490027 | 642 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.781 | 0.705 | 0.0 | |
| 147804811 | 1111 | hypothetical protein VITISV_037299 [Viti | 0.980 | 0.450 | 0.698 | 0.0 | |
| 224085447 | 513 | predicted protein [Populus trichocarpa] | 0.921 | 0.916 | 0.740 | 0.0 | |
| 356536769 | 516 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.978 | 0.663 | 0.0 | |
| 255559466 | 551 | pentatricopeptide repeat-containing prot | 0.972 | 0.900 | 0.674 | 0.0 | |
| 449462348 | 531 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.956 | 0.646 | 0.0 | |
| 297814019 | 525 | pentatricopeptide repeat-containing prot | 1.0 | 0.971 | 0.617 | 0.0 | |
| 357440753 | 562 | WD repeat-containing protein [Medicago t | 0.986 | 0.895 | 0.633 | 0.0 | |
| 15235508 | 532 | pentatricopeptide repeat-containing prot | 0.931 | 0.892 | 0.648 | 0.0 |
| >gi|297737393|emb|CBI26594.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/526 (69%), Positives = 430/526 (81%), Gaps = 17/526 (3%)
Query: 1 MFLRSLGATLAAARVFSTKAAKITTL------------GLATEKKGAG-----GRDTLGR 43
MF + + LAA R FS + A + L + K G GRDTLGR
Sbjct: 1 MFRQRVHTALAAVRHFSAEVATMKPLTTMKPMAIVKPKAVVKPKTSDGNSTSSGRDTLGR 60
Query: 44 RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
RLLSLVYAKRSA I +++W+EEGHTV KYELNRIVRELRKLKRYKHALE+CEWM Q+DI
Sbjct: 61 RLLSLVYAKRSAVIAIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDI 120
Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
KL++GDYAVHLDLI+KIRGL+SAE FFE+L DKM+G TC+ALLH+YVQNK S +AEALM
Sbjct: 121 KLLAGDYAVHLDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALM 180
Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
EKMSECGFLKCPLPYNHM++LYIS+GQL+KVP M+QELKKNTSPDVVTYNLWL CASQN
Sbjct: 181 EKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQN 240
Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
D ETAEK LE+KK KIDPDW++YS+LT+LYIK L +KAATTL EMEKRT RK R+AYS
Sbjct: 241 DVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYS 300
Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
SL+SL+TNM KD V RIWKK+ S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+
Sbjct: 301 SLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSV 360
Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
S TGD RVPNILLAAYIN+N++EMAE FYN++V +GI P YTTWELLTWGYLKK QMEKV
Sbjct: 361 SPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKV 420
Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
L+ F+KA+GSV+KW PD +L+ Y LEEQG+I+GAE +LV LR AGHVSTEIYN LLR
Sbjct: 421 LDYFEKAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLR 480
Query: 464 TYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
YAKAGKMPLI+ E M+KD V+MD ET +++K TS+M VSEVSS F
Sbjct: 481 AYAKAGKMPLIVAEWMKKDKVEMDEETHRLIKETSKMCVSEVSSKF 526
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490027|ref|XP_002279399.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/519 (70%), Positives = 427/519 (82%), Gaps = 17/519 (3%)
Query: 8 ATLAAARVFSTKAAKITTL------------GLATEKKGAG-----GRDTLGRRLLSLVY 50
+ LAA R FS + A + L + K G GRDTLGRRLLSLVY
Sbjct: 121 SALAAVRHFSAEVATMKPLTTMKPMAIVKPKAVVKPKTSDGNSTSSGRDTLGRRLLSLVY 180
Query: 51 AKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110
AKRSA I +++W+EEGHTV KYELNRIVRELRKLKRYKHALE+CEWM Q+DIKL++GDY
Sbjct: 181 AKRSAVIAIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDIKLLAGDY 240
Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170
AVHLDLI+KIRGL+SAE FFE+L DKM+G TC+ALLH+YVQNK S +AEALMEKMSECG
Sbjct: 241 AVHLDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALMEKMSECG 300
Query: 171 FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
FLKCPLPYNHM++LYIS+GQL+KVP M+QELKKNTSPDVVTYNLWL CASQND ETAEK
Sbjct: 301 FLKCPLPYNHMISLYISDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQNDVETAEK 360
Query: 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290
LE+KK KIDPDW++YS+LT+LYIK L +KAATTL EMEKRT RK R+AYSSL+SL+T
Sbjct: 361 VLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHT 420
Query: 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR 350
NM KD V RIWKK+ S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+S TGD R
Sbjct: 421 NMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSVSPTGDSR 480
Query: 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410
VPNILLAAYIN+N++EMAE FYN++V +GI P YTTWELLTWGYLKK QMEKVL+ F+KA
Sbjct: 481 VPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLDYFEKA 540
Query: 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
+GSV+KW PD +L+ Y LEEQG+I+GAE +LV LR AGHVSTEIYN LLR YAKAGK
Sbjct: 541 VGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGK 600
Query: 471 MPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
MPLI+ E M+KD V+MD ET +++K TS+M VSEVSS F
Sbjct: 601 MPLIVAEWMKKDKVEMDEETHRLIKETSKMCVSEVSSKF 639
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/517 (69%), Positives = 423/517 (81%), Gaps = 17/517 (3%)
Query: 1 MFLRSLGATLAAARVFSTKAAKITTL------------GLATEKKGAG-----GRDTLGR 43
MF + + LAA R FS + A + L + K G GRDTLGR
Sbjct: 1 MFRQRVHTALAAVRHFSAEVATMKPLTTMKPMAIVKPKAVVKPKTSDGNSTSSGRDTLGR 60
Query: 44 RLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDI 103
RLLSLVYAKRSA I +++W+EEGHTV KYELNRIVRELRKLKRYKHALE+CEWM Q+DI
Sbjct: 61 RLLSLVYAKRSAVIAIQRWREEGHTVRKYELNRIVRELRKLKRYKHALEICEWMTKQHDI 120
Query: 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163
KL++GDYAVHLDLI+KIRGL+SAE FFE+L DKM+G TC+ALLH+YVQNK S +AEALM
Sbjct: 121 KLLAGDYAVHLDLIAKIRGLASAEKFFEDLSDKMKGQPTCTALLHTYVQNKVSEKAEALM 180
Query: 164 EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223
EKMSECGFLKCPLPYNHM++LYIS+GQL+KVP M+QELKKNTSPDVVTYNLWL CASQN
Sbjct: 181 EKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELKKNTSPDVVTYNLWLTVCASQN 240
Query: 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283
D ETAEK LE+KK KIDPDW++YS+LT+LYIK L +KAATTL EMEKRT RK R+AYS
Sbjct: 241 DVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYS 300
Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
SL+SL+TNM KD V RIWKK+ S+F KMNDAEYTC+ISSLVKLGEFE+AEN+Y EW S+
Sbjct: 301 SLISLHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMISSLVKLGEFEEAENLYSEWTSV 360
Query: 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403
S TGD RVPNILLAAYIN+N++EMAE FYN++V +GI P YTTWELLTWGYLKK QMEKV
Sbjct: 361 SPTGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKV 420
Query: 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463
L+ F+KA+GSV+KW PD +L+ Y LEEQG+I+GAE +LV LR AGHVSTEIYN LLR
Sbjct: 421 LDYFEKAVGSVKKWNPDEKLVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLR 480
Query: 464 TYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEM 500
YAKAGKMPLI+ E M+KD V+MD ET +++K TS+M
Sbjct: 481 AYAKAGKMPLIVAEWMKKDKVEMDEETHRLIKETSKM 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085447|ref|XP_002307578.1| predicted protein [Populus trichocarpa] gi|222857027|gb|EEE94574.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/470 (74%), Positives = 397/470 (84%)
Query: 39 DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
DTLGRRL SLVY KRSA IT+RKWKEEGH V KYELNRIVRELRKLKRYKHALEVCEWM
Sbjct: 40 DTLGRRLFSLVYGKRSAVITIRKWKEEGHNVRKYELNRIVRELRKLKRYKHALEVCEWMT 99
Query: 99 LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
Q DIKLV GDYAVHLDLI+KIRGL+SAE FFE++PDKMR CSALLH YVQNK ++
Sbjct: 100 KQSDIKLVPGDYAVHLDLIAKIRGLNSAEKFFEDIPDKMRDYQACSALLHVYVQNKSISK 159
Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218
AEALMEKMSECGFLK LPYNHML++Y++NGQL+KV +++QELKK TSPDVVTYN+WL A
Sbjct: 160 AEALMEKMSECGFLKNALPYNHMLSVYVANGQLEKVAEIIQELKKKTSPDVVTYNMWLTA 219
Query: 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278
CASQND ETAEK F+ELKK+K+DPDW++YSTLT+LYIK E EKAA TLKE+EKR +KN
Sbjct: 220 CASQNDVETAEKVFMELKKSKLDPDWVTYSTLTNLYIKKECLEKAAYTLKEVEKRASKKN 279
Query: 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338
RV YSSLLSL+ NM KD + R W KM S+F KMNDAEY C+ISSLVKLGEF AEN+Y+
Sbjct: 280 RVTYSSLLSLHANMKDKDGLHRTWNKMKSVFNKMNDAEYNCMISSLVKLGEFGGAENLYN 339
Query: 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398
EWES+S T D RV NI+LA+YINRNQ+E AE+F R+V KGI PCYTTWELLT G+LK
Sbjct: 340 EWESVSATRDSRVSNIVLASYINRNQMEDAENFCQRMVQKGITPCYTTWELLTCGHLKTE 399
Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458
QMEKVLE FKKA+ SVRKW PD RLI + LEE+GDI+GAE LLV LR+AGHVST IY
Sbjct: 400 QMEKVLENFKKALCSVRKWTPDKRLIGDIFKNLEERGDIEGAEKLLVILRDAGHVSTMIY 459
Query: 459 NSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSI 508
NSLLRTYAKAGKMP+II ERMQKDNV++D ET K+++ TS M VSEVSS+
Sbjct: 460 NSLLRTYAKAGKMPVIIEERMQKDNVELDDETHKLIQTTSTMCVSEVSSL 509
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536769|ref|XP_003536907.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/511 (66%), Positives = 405/511 (79%), Gaps = 6/511 (1%)
Query: 2 FLRSLGATLAAARVFSTKA-AKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMR 60
LRS+G LA R FS A A++ + +GG DTLGRRLLSLVY KRSA + +
Sbjct: 10 LLRSVGTYLAVVRHFSASAEARVG----SAAASSSGGGDTLGRRLLSLVYPKRSAVVAIN 65
Query: 61 KWKEEGH-TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
KWKEEGH KY+LNRIVRELRK KRYKHALEVCEWM LQ D+KLV GDYAVHLDLI+K
Sbjct: 66 KWKEEGHEPPRKYQLNRIVRELRKDKRYKHALEVCEWMTLQKDMKLVQGDYAVHLDLITK 125
Query: 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
+RGL+SAE FFE+LPD+MRG TCSALLH+YVQN +AEALM KMSEC L PLPYN
Sbjct: 126 VRGLNSAEKFFEDLPDRMRGKQTCSALLHAYVQNNLVDKAEALMLKMSECDLLINPLPYN 185
Query: 180 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
HM++LYISNG+L+KVP+++QELK NTSPD+VT+NLWLAACASQND ETAE+ LELKK K
Sbjct: 186 HMISLYISNGKLEKVPKIIQELKMNTSPDIVTFNLWLAACASQNDVETAERVLLELKKAK 245
Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
IDPDW++YSTLT+LYIK EKA T+KEME RT RK RVAYSSLLSL+TNMG KD+V
Sbjct: 246 IDPDWVTYSTLTNLYIKNASLEKAGATVKEMENRTSRKTRVAYSSLLSLHTNMGNKDDVN 305
Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
RIW+KM + F KMND EY C+ISSL+KLG+F AE++Y EWES+SGT D RV NILL +Y
Sbjct: 306 RIWEKMKASFRKMNDNEYICMISSLLKLGDFAGAEDLYREWESVSGTNDVRVSNILLGSY 365
Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
IN++Q+EMAE F N++V KG+ PCYTTWEL TWGYLK+ +EK L+ F KAI SV KW P
Sbjct: 366 INQDQMEMAEDFCNQIVQKGVIPCYTTWELFTWGYLKRKDVEKFLDYFSKAISSVTKWSP 425
Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
D RL+ A+ +EEQ GAE LLV LRNAGHV+T IYN L+TYA AGKMP+I+ ERM
Sbjct: 426 DQRLVQEAFKIIEEQAHTKGAEQLLVILRNAGHVNTNIYNLFLKTYATAGKMPMIVAERM 485
Query: 480 QKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
+KDNV++D ET+++L +TS+M VS+VS I S
Sbjct: 486 RKDNVKLDEETRRLLDLTSKMCVSDVSRILS 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559466|ref|XP_002520753.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540138|gb|EEF41715.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/501 (67%), Positives = 410/501 (81%), Gaps = 5/501 (0%)
Query: 1 MFLRSLGATLAAA-RVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITM 59
M RS ATLAAA R FST+AA T A + G DTLGRR+ SLVY+KRSA I +
Sbjct: 1 MLRRSSRATLAAAARYFSTEAAATETAEKAVRRGG----DTLGRRIFSLVYSKRSAVIAI 56
Query: 60 RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK 119
RKWK EGH V KY+LNRIVRELRK+KRYKHALEVCEWM + ++KL+ GDYAVHLDL++K
Sbjct: 57 RKWKTEGHKVQKYQLNRIVRELRKMKRYKHALEVCEWMTQERELKLLPGDYAVHLDLVAK 116
Query: 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179
+RGL+SAE FFE+LPD+MRG TC+ALLH+YV+ K +AEALMEKM +C F+K PLPYN
Sbjct: 117 VRGLTSAEKFFEDLPDEMRGWQTCTALLHTYVKCKDVVKAEALMEKMRDCSFVKNPLPYN 176
Query: 180 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239
HM++LYI++G+ DK ++++ELKK+T+PDVVT+NLWL+ CAS ND E+A+K LELKK K
Sbjct: 177 HMISLYIADGEFDKAKRIVEELKKSTTPDVVTFNLWLSMCASLNDVESAKKVLLELKKLK 236
Query: 240 IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299
I+ DWI+YSTLT+LY+K +L E A +TLKEMEKR RKNR+AYSSLLSLYTNMG KD V
Sbjct: 237 IEADWITYSTLTNLYLKNKLLEDAVSTLKEMEKRASRKNRLAYSSLLSLYTNMGDKDAVH 296
Query: 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359
RIW KM SLF KMNDAEYTC++SSL+KL E EKAEN+Y EWES+SGTGDP+V NILLAAY
Sbjct: 297 RIWNKMKSLFCKMNDAEYTCMLSSLIKLEEIEKAENLYTEWESVSGTGDPQVANILLAAY 356
Query: 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419
INRNQ+E +E+FY R+V KG+ PCYTTWELLTWG+LK QMEKVL+CFKKAI V+ W P
Sbjct: 357 INRNQIEDSENFYRRMVEKGVCPCYTTWELLTWGHLKTKQMEKVLDCFKKAITIVKTWSP 416
Query: 420 DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERM 479
D RL+ + LEE+G+ +GAE LV LRNAG+VSTEIYNSLLRTYAKAGKMPLI+ ERM
Sbjct: 417 DKRLVREVFKILEEKGNAEGAEEFLVMLRNAGYVSTEIYNSLLRTYAKAGKMPLIVTERM 476
Query: 480 QKDNVQMDAETQKVLKITSEM 500
+KD V++D ET +++K TS M
Sbjct: 477 KKDGVELDEETHRLIKTTSSM 497
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462348|ref|XP_004148903.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Cucumis sativus] gi|449491586|ref|XP_004158945.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/518 (64%), Positives = 401/518 (77%), Gaps = 10/518 (1%)
Query: 2 FLRSLGATLA--AARVFSTKAAKITTLGLATEKKGA--------GGRDTLGRRLLSLVYA 51
RS +LA AAR FS +A+ + A E GGRDTLGRRL+SL++
Sbjct: 1 MFRSFRPSLATAAARRFSGEASMAASENTALEGAAGTRVVSGKGGGRDTLGRRLMSLIFP 60
Query: 52 KRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111
KRSA +RKW+EEG TV KYELNR VRELRKLKRYKHALEVCEWM LQ D++LV GDYA
Sbjct: 61 KRSAVTAIRKWQEEGRTVRKYELNRNVRELRKLKRYKHALEVCEWMTLQKDMRLVPGDYA 120
Query: 112 VHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGF 171
VHLDLI KIRGL+ AE FFE+LPDK+R C++LLH+YVQN S +AEALMEKMSECGF
Sbjct: 121 VHLDLICKIRGLNRAEKFFEDLPDKIREQSVCTSLLHAYVQNNLSEKAEALMEKMSECGF 180
Query: 172 LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231
LK PL +NHML+L+ISN QL+KVP +++ LKKNT PDVVTYNL L C QND E AE
Sbjct: 181 LKSPLSFNHMLSLHISNKQLEKVPALIEGLKKNTKPDVVTYNLLLNVCTLQNDTEAAENI 240
Query: 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
FLE+KKTKI PDW+S+STL +LY K +L EKAA TLKEMEK + NR++ SSLLSLYTN
Sbjct: 241 FLEMKKTKIQPDWVSFSTLANLYCKNQLTEKAAATLKEMEKMAFKSNRLSLSSLLSLYTN 300
Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
+G K+EV RIWKK+ S F KM+D EY C+ISSLVKL E E+AE +Y EWES+SGT D RV
Sbjct: 301 LGDKNEVYRIWKKLKSSFRKMSDREYMCMISSLVKLNELEEAEKLYTEWESVSGTRDTRV 360
Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
N++L AYI +NQ+E AESFYNR++ KG P YTTWELLTWGYLK+ QMEKVL F+KA+
Sbjct: 361 SNVMLGAYIKKNQIEQAESFYNRMLQKGTVPSYTTWELLTWGYLKENQMEKVLHFFRKAV 420
Query: 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM 471
V+KW D RL+ KLEEQG+I+G E LL+ LRNAGHV TEIYNSLLRTYAKAGKM
Sbjct: 421 NRVKKWNADERLVKGVCKKLEEQGNINGVEQLLLILRNAGHVDTEIYNSLLRTYAKAGKM 480
Query: 472 PLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
PLI+ ERM++DNVQ++ ET+++L++TS+M VSEVSS
Sbjct: 481 PLIVAERMERDNVQLNDETRELLRLTSKMCVSEVSSTL 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814019|ref|XP_002874893.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320730|gb|EFH51152.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/525 (61%), Positives = 409/525 (77%), Gaps = 15/525 (2%)
Query: 1 MFLRSLGATLAA-ARVFSTKAAKITTL------------GLATEKKG--AGGRDTLGRRL 45
M LRS TLA+ R+FS A + T G AT +K GGRDTLG RL
Sbjct: 1 MLLRSARPTLASICRLFSAAAGTVDTTAEAAVKTRSGGGGAATNRKETVVGGRDTLGGRL 60
Query: 46 LSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL 105
LSLVY KRSA +T+RKWKEEGH+V KYELNRIVRELRK+KRYKHALE+CEWM LQ DIKL
Sbjct: 61 LSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVLQEDIKL 120
Query: 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEK 165
+GDYAVHLDLISKIRGL+SAE FFE+LPD+MRG C++LLHSYVQNK S +AEAL EK
Sbjct: 121 QAGDYAVHLDLISKIRGLNSAEKFFEDLPDQMRGHAACTSLLHSYVQNKLSDKAEALFEK 180
Query: 166 MSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225
M ECGFLK LPYNHML+++IS GQ +KV +++ELK TSPD+VTYNLWL A AS ND
Sbjct: 181 MGECGFLKSCLPYNHMLSMFISKGQFEKVSVLIKELKMKTSPDIVTYNLWLTAFASGNDV 240
Query: 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL 285
E AEK +L+ K++K++PDW++YS LT+LY K + EKA LKEMEK +KNRVAY+SL
Sbjct: 241 EGAEKVYLKAKESKLNPDWVTYSVLTNLYAKTDNLEKAKLALKEMEKLVSKKNRVAYASL 300
Query: 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345
+SL+ N+G KD V WKK+ S F KMNDAEY +IS++VKLGEFE+A+ +YDEWES+SG
Sbjct: 301 ISLHANLGDKDGVNLTWKKVRSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSG 360
Query: 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLE 405
TGD R+PN++LA Y+NR+++ + E FY R+V KGI P Y+TWE+LTW YLK+ +EKVL+
Sbjct: 361 TGDARIPNLILAEYMNRDEILLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDLEKVLD 420
Query: 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465
CF+KAI SV+KW + RL+ A +LEEQG++ GAE L+ L+ AGHV+T++YNSLLRTY
Sbjct: 421 CFEKAIDSVKKWTVNVRLVKAVCKELEEQGNVKGAEKLMTLLQKAGHVNTQLYNSLLRTY 480
Query: 466 AKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
AKAG+M LI+ ERM KDNV++D ET++++++TS M V+E+SS S
Sbjct: 481 AKAGEMALIVEERMAKDNVELDEETKELIRLTSRMRVTEISSTIS 525
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440753|ref|XP_003590654.1| WD repeat-containing protein [Medicago truncatula] gi|355479702|gb|AES60905.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/515 (63%), Positives = 408/515 (79%), Gaps = 12/515 (2%)
Query: 1 MFLRSLGATLAA-ARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITM 59
M LRS+G+ LA AR ST+ A+ G+ +GG DTLGRRLLSLVY KRSA I +
Sbjct: 1 MSLRSVGSYLATTARHLSTEPAR---RGVTAASSSSGG-DTLGRRLLSLVYPKRSAVIAI 56
Query: 60 RKWKEEGHTV-HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118
KWKEEGHT+ KY+LNR++RELRK KRYKHALEVCEWM+LQ DIKLV GDYAV LDLI+
Sbjct: 57 NKWKEEGHTLPRKYQLNRMIRELRKNKRYKHALEVCEWMKLQNDIKLVEGDYAVQLDLIT 116
Query: 119 KIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178
K+RGL+SAE FFE+LPDKMRG TC+ALLH+YVQN + +AEALM KMSECGFL+ P+PY
Sbjct: 117 KVRGLNSAEKFFEDLPDKMRGQPTCTALLHAYVQNNLTNKAEALMSKMSECGFLRSPVPY 176
Query: 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238
N M++LYISNG+L+KVP++ +ELK NTSPDVVT+NL L ACAS+ND ETAE+ L+LKK
Sbjct: 177 NRMMSLYISNGKLEKVPKLFEELKVNTSPDVVTFNLLLTACASENDVETAERVLLQLKKA 236
Query: 239 KIDPDWISYSTLTSLYIKM----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
K+DPDW++YSTLT+LYI+ + EKAA+TLKEMEKRT R+ RVAYSSLLSL+ NMG
Sbjct: 237 KVDPDWVTYSTLTNLYIRNASVDDCLEKAASTLKEMEKRTSRETRVAYSSLLSLHANMGN 296
Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
DEV RIW KM + F KM+D EY C+ISSLVKLG+F EN+Y EWES+SGT D RV N+
Sbjct: 297 VDEVNRIWGKMKACFCKMSDDEYVCMISSLVKLGDFAGVENLYKEWESVSGTNDVRVSNL 356
Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
LL +Y+++ Q+EMAE F N+LV KG+ Y++WELLT GYLKK ++K L F KAI SV
Sbjct: 357 LLTSYVDQGQMEMAEIFCNQLVEKGVCLSYSSWELLTRGYLKKKDVKKFLHYFGKAISSV 416
Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI 474
++W+PD RL+ A+ ++EQ I+GAE LLV LRNAGHV+T IYN L+TYA AGKMPL+
Sbjct: 417 KQWIPDPRLVQEAFTVIQEQAHIEGAEQLLVILRNAGHVNTNIYNLFLKTYAAAGKMPLV 476
Query: 475 IVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIF 509
+ ERM+KDNVQ+D ET ++L +TS+M V +S+++
Sbjct: 477 VAERMKKDNVQLDKETHRLLDLTSKMCV--ISAVY 509
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235508|ref|NP_192191.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75213327|sp|Q9SY07.1|PP302_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02820, mitochondrial; Flags: Precursor gi|4263527|gb|AAD15353.1| hypothetical protein [Arabidopsis thaliana] gi|7269767|emb|CAB77767.1| hypothetical protein [Arabidopsis thaliana] gi|332656833|gb|AEE82233.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/475 (64%), Positives = 389/475 (81%)
Query: 36 GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCE 95
GGRDTLG RLLSLVY KRSA +T+RKWKEEGH+V KYELNRIVRELRK+KRYKHALE+CE
Sbjct: 58 GGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICE 117
Query: 96 WMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK 155
WM +Q DIKL +GDYAVHLDLISKIRGL+SAE FFE++PD+MRG C++LLHSYVQNK
Sbjct: 118 WMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKL 177
Query: 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW 215
S +AEAL EKM ECGFLK LPYNHML++YIS GQ +KVP +++ELK TSPD+VTYNLW
Sbjct: 178 SDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTSPDIVTYNLW 237
Query: 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275
L A AS ND E AEK +L+ K+ K++PDW++YS LT+LY K + EKA LKEMEK
Sbjct: 238 LTAFASGNDVEGAEKVYLKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVS 297
Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
+KNRVAY+SL+SL+ N+G KD V WKK+ S F KMNDAEY +IS++VKLGEFE+A+
Sbjct: 298 KKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKG 357
Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
+YDEWES+SGTGD R+PN++LA Y+NR+++ + E FY R+V KGI P Y+TWE+LTW YL
Sbjct: 358 LYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYL 417
Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455
K+ MEKVL+CF KAI SV+KW + RL+ A +LEEQG++ GAE L+ L+ AG+V+T
Sbjct: 418 KRKDMEKVLDCFGKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNT 477
Query: 456 EIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSEVSSIFS 510
++YNSLLRTYAKAG+M LI+ ERM KDNV++D ET++++++TS+M V+E+SS S
Sbjct: 478 QLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQMRVTEISSTIS 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.949 | 0.909 | 0.639 | 3.4e-171 | |
| TAIR|locus:2204793 | 524 | AT1G02150 [Arabidopsis thalian | 0.8 | 0.778 | 0.365 | 8.1e-76 | |
| TAIR|locus:2146390 | 491 | AT5G27460 "AT5G27460" [Arabido | 0.947 | 0.983 | 0.335 | 3.7e-71 | |
| TAIR|locus:2036586 | 491 | AT1G60770 [Arabidopsis thalian | 0.843 | 0.875 | 0.344 | 4.8e-71 | |
| TAIR|locus:504955535 | 492 | AT4G21705 "AT4G21705" [Arabido | 0.901 | 0.934 | 0.322 | 1.5e-65 | |
| TAIR|locus:2051379 | 490 | AT2G20710 [Arabidopsis thalian | 0.876 | 0.912 | 0.355 | 2.5e-65 | |
| TAIR|locus:2141360 | 502 | AT4G01990 [Arabidopsis thalian | 0.854 | 0.868 | 0.309 | 2.1e-61 | |
| TAIR|locus:2204808 | 537 | AT1G02370 "AT1G02370" [Arabido | 0.952 | 0.905 | 0.307 | 1.7e-59 | |
| TAIR|locus:2184807 | 409 | AT5G09450 "AT5G09450" [Arabido | 0.605 | 0.755 | 0.373 | 1.5e-53 | |
| TAIR|locus:2010459 | 566 | AT1G28020 "AT1G28020" [Arabido | 0.725 | 0.653 | 0.309 | 5.7e-43 |
| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1664 (590.8 bits), Expect = 3.4e-171, P = 3.4e-171
Identities = 311/486 (63%), Positives = 393/486 (80%)
Query: 27 GLATEKKGA--GGRDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKL 84
G + KK GGRDTLG RLLSLVY KRSA +T+RKWKEEGH+V KYELNRIVRELRK+
Sbjct: 47 GESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKI 106
Query: 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCS 144
KRYKHALE+CEWM +Q DIKL +GDYAVHLDLISKIRGL+SAE FFE++PD+MRG C+
Sbjct: 107 KRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACT 166
Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
+LLHSYVQNK S +AEAL EKM ECGFLK LPYNHML++YIS GQ +KVP +++ELK
Sbjct: 167 SLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR 226
Query: 205 TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264
TSPD+VTYNLWL A AS ND E AEK +L+ K+ K++PDW++YS LT+LY K + EKA
Sbjct: 227 TSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKLNPDWVTYSVLTNLYAKTDNVEKAR 286
Query: 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324
LKEMEK +KNRVAY+SL+SL+ N+G KD V WKK+ S F KMNDAEY +IS++
Sbjct: 287 LALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAV 346
Query: 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384
VKLGEFE+A+ +YDEWES+SGTGD R+PN++LA Y+NR+++ + E FY R+V KGI P Y
Sbjct: 347 VKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSY 406
Query: 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444
+TWE+LTW YLK+ MEKVL+CF KAI SV+KW + RL+ A +LEEQG++ GAE L+
Sbjct: 407 STWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLM 466
Query: 445 VTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQKVLKITSEMPVSE 504
L+ AG+V+T++YNSLLRTYAKAG+M LI+ ERM KDNV++D ET++++++TS+M V+E
Sbjct: 467 TLLQKAGYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELIRLTSQMRVTE 526
Query: 505 VSSIFS 510
+SS S
Sbjct: 527 ISSTIS 532
|
|
| TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 151/413 (36%), Positives = 248/413 (60%)
Query: 55 AAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVH 113
AA + +W++ G + K+EL R+V+ELRK KR ALEV +WM + + +L + D A+
Sbjct: 83 AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQ 142
Query: 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173
LDLI K+RG+ AE FF LP+ + +LL++YV+ K +AEAL+ M + G+
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202
Query: 174 CPLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAF 232
PLP+N M+ LY++ + DKV M+ E+K K+ D+ +YN+WL++C S E E +
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262
Query: 233 LELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291
++K I P+W ++ST+ ++YIKM EKA L+++E R +NR+ Y LLSLY +
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322
Query: 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351
+G K E+ R+W S+ + + Y ++SSLV++G+ E AE +Y+EW + + DPR+
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382
Query: 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411
PN+L+ AY+ +QLE AE ++ +V G KP +TWE+L G+ +K + + L C + A
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442
Query: 412 GSV--RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462
+ W P +++ + EE+ D+ E +L LR +G + + Y +L+
Sbjct: 443 SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALI 495
|
|
| TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 165/492 (33%), Positives = 260/492 (52%)
Query: 1 MFLRSLGATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMR 60
M +R + + +++L ++ R++L + +L +RS ++
Sbjct: 1 MLIRCVAVAKTRFNTTGVVSRLVSSLADGSDTSSVANRNSL-KEILRKNGPRRSVTSLLQ 59
Query: 61 KWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120
+ + GH V EL I + L + RY AL++ EWME Q DI+ D A+ LDLI K
Sbjct: 60 ERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKT 119
Query: 121 RGLSSAENFFENLPDK---MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176
GL E +FE L MR LL +YV+NK EAEALMEK++ GFL P
Sbjct: 120 HGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPH 179
Query: 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQNDKETAEKAFLEL 235
P+N M+ LY ++GQ +KV ++ +K N P +V++YNLW+ AC + E + E+
Sbjct: 180 PFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEM 239
Query: 236 KKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294
K ++ W S TL ++YIK EKA L++ EK R NR+ Y L++LY ++G
Sbjct: 240 VGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGN 299
Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
K+ V+R+W+ S+ +++ Y CV+SSLVK G+ E+AE ++ EWE+ D RV N+
Sbjct: 300 KEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNV 359
Query: 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414
LL AY+ ++ AES + ++ +G P Y TWE+L G++K MEK ++ + +
Sbjct: 360 LLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLM 419
Query: 415 RK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
R+ W P H ++ A E++ I+ A + L G S +Y LLR + A +
Sbjct: 420 RRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHAKRPA 479
Query: 473 LIIVERMQKDNV 484
I E M+ D +
Sbjct: 480 YDIYEMMKLDKL 491
|
|
| TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 151/438 (34%), Positives = 248/438 (56%)
Query: 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAEN 128
V K+E+ +++LR Y AL++ E ME + K VS D A+HLDL++K R +++ EN
Sbjct: 53 VFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVS-DQAIHLDLVAKAREITAGEN 111
Query: 129 FFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188
+F +LP+ + T +LL+ Y + + +AE L+ KM E + YN ++ LY
Sbjct: 112 YFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKT 171
Query: 189 GQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWIS 246
G+ +KVP M+QELK +N PD TYN+W+ A A+ ND E+ E+ + ++ PDW +
Sbjct: 172 GETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTT 231
Query: 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306
YS + S+Y+ L +KA L+E+E + +++ AY L++LY +G EV RIW+ +
Sbjct: 232 YSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLR 291
Query: 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366
K ++ Y +I LVKL + AE ++ EW++ T D R+ N+L+ AY ++
Sbjct: 292 LAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQ 351
Query: 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI----GSVRKWVPDHR 422
A + +G K TWE+ Y+K G M + LEC KA+ G KW+P
Sbjct: 352 KANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPE 411
Query: 423 LITAAYNKLEEQGDIDGAEHLLVTLRNA-GHVSTEIYNSLLRTYAKAGKMPLIIVERMQK 481
+ A + E++ D++GAE+LL L+N ++ EI+ L+RTYA AGK + R++
Sbjct: 412 TVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKM 471
Query: 482 DNVQMDAETQKVLKITSE 499
+NV+++ T+K+L S+
Sbjct: 472 ENVEVNEATKKLLDEVSQ 489
|
|
| TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 151/468 (32%), Positives = 257/468 (54%)
Query: 38 RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
+ TL ++ L K S ++ W + G V EL RIV +LR+ KR+ HALEV +WM
Sbjct: 24 KTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWM 83
Query: 98 ELQYDIKLVSG-DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156
+ + + S ++AVHLDLI ++ G +AE +FENL ++ + T ALL+ YV+ +
Sbjct: 84 N-ETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNV 142
Query: 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYNLW 215
++ EKM E GF+ L YN+++ LY + GQ +KVP++L+E+K+ N +PD +Y +
Sbjct: 143 EKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRIC 202
Query: 216 LAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274
+ A + D E ++++ + I DW +Y+ YI ++A LK E R
Sbjct: 203 INAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRL 262
Query: 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334
+K+ Y+ L++LY +G K EVLR+W + + + +Y V+ SLVK+ +AE
Sbjct: 263 EKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAE 322
Query: 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394
+ EW+S D RVPN ++ YI ++ E AE+ L +G +WEL+ Y
Sbjct: 323 EVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAY 382
Query: 395 LKKGQMEKVLECFKKAIG---SVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451
+KG +E +C K A+G RKW P L+T+ + + ++G + E + +LRN
Sbjct: 383 AEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCI 442
Query: 452 HVSTEIYNSLLRTYAKAGKMPL-IIVERMQKDNVQMDAETQKVLKITS 498
V+ ++Y++L++ + G + +++RM+ D +++D ET +L S
Sbjct: 443 GVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVILSTRS 490
|
|
| TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 163/458 (35%), Positives = 243/458 (53%)
Query: 39 DTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98
DTL RR+ S + W ++G+ V EL+ I++ LRK R+ HAL++ +WM
Sbjct: 38 DTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMS 97
Query: 99 LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAE 158
++ GD A+ LDLI+K+ GL AE FFE +P + R ALL+ Y K +
Sbjct: 98 EHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHK 157
Query: 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLA 217
AE + ++M E GFLK LPYN MLNLY+ G+ V ++L+E++ T PD+ T N L
Sbjct: 158 AEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLH 217
Query: 218 ACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-C 275
A + +D E EK + + + + DW +Y+ + YIK L EKA L++ E+
Sbjct: 218 AYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNA 277
Query: 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335
+K + AY L+S Y G K+EV R+W L N Y VIS+L+K+ + E+ E
Sbjct: 278 QKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTG-YISVISALLKMDDIEEVEK 336
Query: 336 IYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395
I +EWE+ D R+P++L+ Y + +E AE N LV K +TWE L GY
Sbjct: 337 IMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYK 396
Query: 396 KKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453
G+MEK +E +K+AI V K W P ++ + + LE Q D++G +L L GH+
Sbjct: 397 MAGKMEKAVEKWKRAI-EVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHI 455
Query: 454 STEIYNSLLRTYAKAGKMPLIIVERMQKDNVQMDAETQ 491
S Y+ LL AG + IV+ M K + E +
Sbjct: 456 S---YDQLLYDMNGAG-LSWKIVDAMGKGRYVEEREVR 489
|
|
| TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 136/440 (30%), Positives = 242/440 (55%)
Query: 58 TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117
T+ ++ EG V K++L R ++LRK ++ + ALE+ EWME + +I D+A+ L+LI
Sbjct: 59 TLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERK-EIAFTGSDHAIRLNLI 117
Query: 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP 177
+K +GL +AE +F +L D ++ T +LL+ Y K+ +A+A E M + + LP
Sbjct: 118 AKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLP 177
Query: 178 YNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
+N+++ +Y+ GQ +KVP ++ +K K+ +P +TY++W+ +C S D + EK E+K
Sbjct: 178 FNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMK 237
Query: 237 KTKIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
W +++ L ++YIK+ L KA LK +E R Y L++LYT +
Sbjct: 238 AEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTGIANA 297
Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
EV R+W + + +N++ Y ++ +L KL + + + ++ EWES T D R+ N+
Sbjct: 298 SEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVA 357
Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI-GSV 414
+++Y+ +N E AE+ +N + K +LL LK Q + L+ F+ A+
Sbjct: 358 ISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAAVLDQD 417
Query: 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLI 474
+ W LI++ + EE D+DGAE TL +S+E Y L++TY AGK
Sbjct: 418 KNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSETYTLLMKTYLAAGKACPD 477
Query: 475 IVERMQKDNVQMDAETQKVL 494
+ +R+++ + +D E + +L
Sbjct: 478 MKKRLEEQGILVDEEQECLL 497
|
|
| TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 152/495 (30%), Positives = 254/495 (51%)
Query: 8 ATLAAARVFSTKAAKITTLGLATEKKGAGGRDTLGRRLLSLVYAKRSAAITMRKWKEEGH 67
A + A V S A +A + R+ L ++L L + A T+ ++ EG
Sbjct: 41 ANVVEASVSSPAAENGVRTSVAAPTVASRQRE-LYKKLSMLSVTGGTVAETLNQFIMEGI 99
Query: 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAE 127
TV K +L R + LRK +R +HA E+ +WME + VS D+A+ LDLI K +GL +AE
Sbjct: 100 TVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRKMTFSVS-DHAICLDLIGKTKGLEAAE 158
Query: 128 NFFENL-PDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
N+F NL P T AL++ Y + +A+A E M E F+ LP+N+M+++Y+
Sbjct: 159 NYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYM 218
Query: 187 SNGQLDKVPQMLQELK-KNTSPDVVTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDW 244
Q +KVP ++ +K + SP VTY++W+ +C S ND + EK E+ K ++ W
Sbjct: 219 RLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTW 278
Query: 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304
++S L ++Y K L EKA + LK ME++ NR ++ L+SLY + EV R+W+
Sbjct: 279 NTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWES 338
Query: 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364
+ ++N+ Y ++ ++ KLG+ + + I+ EWES D R+ NI + Y+ N
Sbjct: 339 LKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNM 398
Query: 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK----WVPD 420
E AE + + K P +LL L+ + + ++ + A+ + W
Sbjct: 399 YEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWS 458
Query: 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMPLIIVERMQ 480
L++ + E+ D+DGAE L N + +E L++TYA A K + ER+
Sbjct: 459 SELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMTFLIKTYAAAEKTSPDMRERLS 518
Query: 481 KDNVQMDAETQKVLK 495
+ +++ E Q +LK
Sbjct: 519 QQQIEVSEEIQDLLK 533
|
|
| TAIR|locus:2184807 AT5G09450 "AT5G09450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 117/313 (37%), Positives = 181/313 (57%)
Query: 38 RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWM 97
+D L R+ L KRSA + KW EG+ + EL I +ELR+ +RYKHALEV EWM
Sbjct: 54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113
Query: 98 ELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSA 157
+ K+ DYA +DLISK+ G+ +AE +FE L + +T ++LLH+Y +K++
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173
Query: 158 EAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELK-KNTSPDVVTYNLW 215
AEAL +++ E L + YN M+ LY+S GQ++KVP++++ LK K SPD+ TYNLW
Sbjct: 174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233
Query: 216 LAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLK-EMEKR 273
L++CA+ + + K E++ + W+ Y LTS+YI A +TL E EK
Sbjct: 234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293
Query: 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKA 333
++ + Y L+ L+T +G K + +IWK + + ++ Y CV+SS + LG +A
Sbjct: 294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353
Query: 334 ENIYDEWESISGT 346
E I +W+ T
Sbjct: 354 EEIIHQWKESKTT 366
|
|
| TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 119/385 (30%), Positives = 198/385 (51%)
Query: 53 RSAAI--TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110
R+A I + +W+++G+ V+ + I+++LR + AL+V EWM + L+ D+
Sbjct: 48 RNAQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDF 107
Query: 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS-AEAEALMEKMSEC 169
A L LI + GL AE FFE++P RG ++LL+SY ++ K+ +AEA +KM +
Sbjct: 108 AARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDL 167
Query: 170 GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETA 228
G L P+PYN M++LY + +KV ++L E+K N D VT N L ++ D
Sbjct: 168 GLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEM 227
Query: 229 EKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLL 286
EK + + I +W + + Y++ KA L+ E+ +K+ + AY L+
Sbjct: 228 EKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLM 287
Query: 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346
LY G ++EVLR+WK S + ++ Y VI SL+K+ + AE IY WES+
Sbjct: 288 KLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLE 347
Query: 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT-WG-YLKKGQMEKVL 404
D R+P +L + Y +R E AE N K + LL WG +K ++ ++
Sbjct: 348 FDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGDQMKPSDLKCLI 407
Query: 405 EC------FKKAIGSVRKWVPDHRL 423
+ F KA+ V +W+ + ++
Sbjct: 408 KNLRDSKQFSKAL-QVSEWMGEKQV 431
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SY07 | PP302_ARATH | No assigned EC number | 0.6484 | 0.9313 | 0.8928 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 510 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 15/272 (5%)
Query: 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK 202
C++L+ Y+ EAE + +M E K + + M++ Y NG DK + ++
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRM-ET---KDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 203 -KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261
N SPD +T L+ACA D + ++L + ISY + + I+M
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVG----VKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321
K E+ K+ ++++S+++ E L +++M+ L K N +
Sbjct: 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAAL 496
Query: 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381
S+ ++G + I+ D +PN LL Y+ ++ A + +N K +
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDV- 554
Query: 382 PCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
+W +L GY+ G+ +E F + + S
Sbjct: 555 ---VSWNILLTGYVAHGKGSMAVELFNRMVES 583
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 15/202 (7%)
Query: 189 GQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245
GQ+D+ V QM+ E +P+V Y + + +C+ + D + A + ++KK + PD +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
+S L + +KA L++ K+ + V+YSSL+ +N + L +++ +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN-----ILLAAYI 360
S+ + + +I++L + + KA + E + + PN ILL A
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-----LCPNTITYSILLVASE 765
Query: 361 NRNQLEMAESFYNRLVTKGIKP 382
++ ++ ++ GIKP
Sbjct: 766 RKDDADVGLDLLSQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 18/345 (5%)
Query: 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LK 202
+A+L +V+ + A + KM E + +N ++ Y G D+ + L
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 203 KNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262
PDV T+ L C D + + + + D + L ++Y+K
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322
A M +R C +++++++S Y G E L ++ M L + T VIS
Sbjct: 241 ARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382
+ LG+ ++ D V N L+ Y++ AE ++R+ TK
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA-- 354
Query: 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442
+W + GY K G +K LE + A+ PD I + + GD+D
Sbjct: 355 --VSWTAMISGYEKNGLPDKALETY--ALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 443 LLVTLRNAGHVSTEIY-NSLLRTYAKAGKM--PLIIVERMQKDNV 484
L G +S + N+L+ Y+K + L + + + +V
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250
PDVVTYN + + E A K F E+KK I P+ +YS L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 178 YNHMLNLYISNGQLDKVPQMLQELKK-NTSPDVVTYN 213
YN +++ Y G++++ ++ E+KK P+V TY+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYS 42
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (104), Expect = 5e-05
Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 3/212 (1%)
Query: 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-VAYS 283
E E L+ L +K+ E+A L++ + N A
Sbjct: 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALL 99
Query: 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343
+L L +G +E L + +K ++L + AE + +L +LG++E+A +Y++ +
Sbjct: 100 NLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL 159
Query: 344 SGTGDPRVPNILLAA--YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
+ +L + E A + + L YLK G+ E
Sbjct: 160 DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219
Query: 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433
+ LE ++KA+ + +L
Sbjct: 220 EALEYYEKALELDPDNAEALYNLALLLLELGR 251
|
Length = 291 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 9/194 (4%)
Query: 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204
AL+ Y + +A + + M E K + +N ML Y +G ++ + E++ +
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 205 -TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263
S D T+++ + + E A++A L +T D ++ + L LY K E A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323
M RKN +++++L++ Y N G + + ++++M++ N + V+S+
Sbjct: 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 324 LVKLGEFEKAENIY 337
G E+ I+
Sbjct: 436 CRYSGLSEQGWEIF 449
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 78/366 (21%), Positives = 148/366 (40%), Gaps = 36/366 (9%)
Query: 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDL---ISKIRGLSSAENFFENL---PDKMR 138
R++ ALE+ E +E L + Y ++ + IR + + E+ PD+
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY- 159
Query: 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198
+ +L +V+ +A L ++M E + + ++ + G + +
Sbjct: 160 ---MMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALF 212
Query: 199 QELKKNTS-PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257
+E+ ++ S + T+ + L A A ++ + KT + D L +Y K
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317
E A M K VA++S+L+ Y GY +E L ++ +M ++ +
Sbjct: 273 GDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNI-LLAAYINRNQLEMAESFYNR 374
+ +I +L E A+ + + TG P V N L+ Y ++E A + ++R
Sbjct: 329 SIMIRIFSRLALLEHAKQAH---AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA-----AYN 429
+ K + +W L GY G+ K +E F++ I P+H A Y+
Sbjct: 386 MPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYS 439
Query: 430 KLEEQG 435
L EQG
Sbjct: 440 GLSEQG 445
|
Length = 697 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 41/245 (16%)
Query: 185 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244
Y+ +GQ DK ++L+K + +NL A + D A +AF K I+PD+
Sbjct: 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF--EKALSIEPDF 498
Query: 245 I-SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303
+ + L + I+ P+ A +++ KN A +L LY G ++E + +
Sbjct: 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLE 557
Query: 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN 363
K L + + + G+ +KA I +E AA +
Sbjct: 558 KAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNE-----------------AADAAPD 599
Query: 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423
E W +L L G + K + FKK + L
Sbjct: 600 SPEA-------------------WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640
Query: 424 ITAAY 428
+ AY
Sbjct: 641 LADAY 645
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 190 QLDKVPQMLQELKK-NTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
QL K ++L E+K+ P+ +TY++ L A ++D + + K+ I P+ +
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793
Query: 249 TLTSLYIKM 257
+T L ++
Sbjct: 794 CITGLCLRR 802
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 353 NILLAAYINRNQLEMAESFYNRLVTKGIKP 382
N L+ Y + ++E A +N + +GIKP
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.54 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.4 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.25 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.18 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.11 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.09 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.88 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.86 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.75 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.64 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.63 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.44 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.22 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.06 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.9 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.87 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.86 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.83 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.76 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.75 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.75 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.74 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.72 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.5 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.5 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.47 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.47 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.42 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.38 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.33 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.26 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.99 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.95 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.8 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.77 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.65 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.62 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.49 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.42 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.33 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.31 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.26 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.11 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.07 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.02 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.0 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.88 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.74 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.74 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.71 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.6 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.48 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.33 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.29 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.29 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.23 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.23 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.03 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.01 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.99 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.76 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.68 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.67 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.54 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.96 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.62 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.43 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.3 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.2 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 92.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.8 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.73 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.54 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.45 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.25 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.21 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.83 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.71 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.59 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.57 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.55 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.35 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.32 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.26 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.98 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.77 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.64 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.47 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.45 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.18 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.09 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.04 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.94 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.83 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.62 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.61 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.54 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.42 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.23 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.96 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.71 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.61 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.49 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.27 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.08 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.0 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.46 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.31 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.27 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.79 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.74 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.27 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.07 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.26 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.11 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.98 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.65 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.51 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 83.3 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 81.87 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 81.18 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.9 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.87 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.63 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.21 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.11 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-65 Score=519.06 Aligned_cols=450 Identities=14% Similarity=0.178 Sum_probs=423.1
Q ss_pred cHHHHHhhhcccC--CcHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHH
Q 010458 40 TLGRRLLSLVYAK--RSAAITMRKWKEEGH-TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL 116 (510)
Q Consensus 40 ~~~~~l~~~~~~~--~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (510)
.+......++..+ .+|.++|++|.+.|+ +++...++.++..|.+.|.+++|+.+|+.|.. |+..+|+.++.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHH
Confidence 3344444444333 899999999999985 57888889999999999999999999999863 689999999999
Q ss_pred HHHhcChhhHHHHHHhcccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 117 ISKIRGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
|++.|++++|.++|+.|.+.+ ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999885 688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKK--TKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 195 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.++|+.|.+. ..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987 789999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|... ++.||..+|+.++.+|
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL--GLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH----c------------C-------C--ChHHHHHHHHhCCCC
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAK----A------------G-------K--MPLIIVERMQKDNVQ 485 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~----~------------g-------~--~a~~~~~~m~~~~~~ 485 (510)
++.|++++|.+++++|.+.|+. +..+|++++..|.+ . | . +|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999987 78999999876542 1 1 1 589999999999999
Q ss_pred CCHHHHHHHHh
Q 010458 486 MDAETQKVLKI 496 (510)
Q Consensus 486 pd~~t~~~l~~ 496 (510)
||..||..++.
T Consensus 845 Pd~~T~~~vL~ 855 (1060)
T PLN03218 845 PTMEVLSQVLG 855 (1060)
T ss_pred CCHHHHHHHHH
Confidence 99999999994
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=515.67 Aligned_cols=466 Identities=15% Similarity=0.145 Sum_probs=423.3
Q ss_pred CCCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHH
Q 010458 36 GGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111 (510)
Q Consensus 36 ~~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (510)
.+++.+....+...+.. .+|..+++.|.. |+..+|+.++.+|++.|++++|.++|+.|.+.+ +.|+..+|+
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tyn 476 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYT 476 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHH
Confidence 34555555443322222 778888887753 899999999999999999999999999999986 889999999
Q ss_pred HHHHHHHHhcChhhHHHHHHhcccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 010458 112 VHLDLISKIRGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189 (510)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 189 (510)
.++.+|++.|++++|.++|++|.+.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999875 6899999999999999999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010458 190 QLDKVPQMLQELKKN---TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
++++|.++|++|... ..||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999763 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.++.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 010458 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITA 426 (510)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 426 (510)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+. ++.||..+|+.
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tyns 794 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRC 794 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHH----c-------------------CCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 427 AYNKLEE----Q-------------------GDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 427 l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
++..|.+ . +..++|..+|++|.+.|.. +..+|+.++.+++..+. .+..+++.|.
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 9876532 1 1246799999999999986 78999999977766666 7788888888
Q ss_pred hCCCCCCHHHHHHHHhhcCCcccccccc
Q 010458 481 KDNVQMDAETQKVLKITSEMPVSEVSSI 508 (510)
Q Consensus 481 ~~~~~pd~~t~~~l~~~~~~~~~~~~~~ 508 (510)
..+..|+..||++|+..+.....++..+
T Consensus 875 ~~~~~~~~~~y~~Li~g~~~~~~~A~~l 902 (1060)
T PLN03218 875 ISADSQKQSNLSTLVDGFGEYDPRAFSL 902 (1060)
T ss_pred cCCCCcchhhhHHHHHhhccChHHHHHH
Confidence 8899999999999999875333344433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=502.27 Aligned_cols=455 Identities=19% Similarity=0.151 Sum_probs=421.2
Q ss_pred CCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHH
Q 010458 37 GRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAV 112 (510)
Q Consensus 37 ~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 112 (510)
.++.+.++.+...+.+ ++|.++|++|.+.|+.||..+|+.++++|++.+++..+.+++..+.+.+ +.++..+++.
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~ 227 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNA 227 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhH
Confidence 4566666666655544 8999999999999999999999999999999999999999999999886 8899999999
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 192 (510)
++.+|++.|++++|.++|+.|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999986 4889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 193 ~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.+.+++..+.+. ..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988 78999999999999999999999999999996 4788999999999999999999999999999
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+..+|+.++.+|++.|++++|.++|++|. .+|..+
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs 457 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVIS 457 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 468899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+. ++.++..+++.++.+|
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~--g~~~~~~~~naLi~~y 534 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT--GIGFDGFLPNALLDLY 534 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh--CCCccceechHHHHHH
Confidence 99999999999999999999999986 58999999999999999999999999999999987 8989999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC--Cccccccc
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE--MPVSEVSS 507 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~--~~~~~~~~ 507 (510)
+++|++++|.++|+++ .++..+||++|.+|++.|+ +|.++|++|.+.|+.||..||+.++.+|. +.+++..+
T Consensus 535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 9999999999888887 4577889999999999988 88899999998899999999999988884 55666555
Q ss_pred cc
Q 010458 508 IF 509 (510)
Q Consensus 508 ~~ 509 (510)
+|
T Consensus 611 ~f 612 (857)
T PLN03077 611 YF 612 (857)
T ss_pred HH
Confidence 54
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-59 Score=472.50 Aligned_cols=420 Identities=17% Similarity=0.196 Sum_probs=226.6
Q ss_pred CcHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEG-HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
.+|.++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.+ +.|+..+|+.++..|++.|++++|.++|+
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 56666666665542 45666666666666666666666666666666554 55566666666666666666666666666
Q ss_pred hcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCC---
Q 010458 132 NLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP--- 207 (510)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--- 207 (510)
.|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+. ..|
T Consensus 183 ~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 183 EMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred cCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 6654 3566666666666666666666666666665555555555555444444444444444444444443 334
Q ss_pred ----------------------------ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 208 ----------------------------DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 208 ----------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4455555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 260 PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 260 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
+++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555442 23444555555555555555555555555
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-----~~~ 491 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-----PFK 491 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-----CCC
Confidence 55555555555555555555555555555555555543 344555555555555555555555555554443 334
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCC
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNV 484 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~ 484 (510)
|+..+|+.++.+|...|+++.|..+++++.+.+|.+..+|+.|+..|++.|+ +|.+++++|++.|+
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555555555544444444455555555555555 55555555555554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=468.72 Aligned_cols=416 Identities=17% Similarity=0.232 Sum_probs=394.2
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC--CChhhHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM--RGPDTCS 144 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 144 (510)
..++...|+.+|..+.+.|++++|+++|++|...+++.++..+|+.++.+|.+.++++.|.+++..+.+.+ |+..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 45567789999999999999999999999999876577899999999999999999999999999998875 7899999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcC
Q 010458 145 ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 223 (510)
.++.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. ..|+..+|+.++.+|+..|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999975 89999999999999999999999999999887 7889999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
+.+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 589999999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
+|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974 68
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCC-CHHHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN-AGHV-STEIYNSL 461 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l 461 (510)
..+|+.||.+|++.|+.++|+++|++|.+. |+.||..||+.++.+|.+.|++++|.++|+.|.+ .+.. +..+|+.+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 999999999999999999999999999998 9999999999999999999999999999999986 4554 67899999
Q ss_pred HHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 462 LRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 462 ~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
+++|++.|+ +|.+++++| ++.||..+|+.|+.+|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
Confidence 999999999 899888776 78999999999999984
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-59 Score=484.42 Aligned_cols=443 Identities=17% Similarity=0.202 Sum_probs=373.2
Q ss_pred cCCCCCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChh
Q 010458 33 KGAGGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSG 108 (510)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 108 (510)
..|..++....+.+..++.+ ++|..+|++|. .||..+||.+|.+|++.|++++|+++|++|.+.+ +.|+..
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ 289 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLM 289 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChh
Confidence 34455566555555554444 66777777764 4567777777777777777788888888877764 677777
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKM--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
+|+.++.+|++.|+.+.|.+++..+.+.+ ||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~ 365 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence 88888888888888888888877777664 6777888888888888888888888888764 67778888888888
Q ss_pred hCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010458 187 SNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 265 (510)
+.|++++|+++|++|.+. ..||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888888766 6788888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
+|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|.
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 8888754 4777888888888888888888888888875 4889999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHH
Q 010458 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 425 (510)
.+|..++++|+.+|++.|++++|.++|+.+ .||..+|+.+|.+|++.|+.++|+++|++|.+. ++.||..||+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~ 593 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFI 593 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHH
Confidence 999999999999999999999999999887 579999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hCCCC-CHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 426 AAYNKLEEQGDIDGAEHLLVTLR-NAGHV-STEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
.++.+|.+.|++++|.++|++|. +.+.. +..+|+.++++|++.|+ +|.+++++| +++||..+|+.|+.+|.
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998 56664 78999999999999999 999999998 58999999999999994
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-29 Score=265.05 Aligned_cols=430 Identities=15% Similarity=0.056 Sum_probs=352.1
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|..+++.+.... +.++..|..+...+...|++++|.+.|+++.+.. |.+...+..++..+...|++++|.+.++.
T Consensus 448 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 448 DKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888888877643 5677788888888888999999999998888764 56677788888888888999999999988
Q ss_pred cccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 133 LPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
+....| +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|.++++.+.+..+.+..+
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 877765 46778888888888999999999998887765 2356677788888889999999999999888777778888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
|..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...|+++.+..+. +..++..++..+..
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 8999999999999999999999887654 345677888888899999999999999988876443 67788888889999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+.+.. |+..++..++.++.+.|++++|...
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999888764 3456677788888889999999999999888754 4446777788888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
++++.+..+ .+...+..+...|...|++++|.+.|+++.+ ..+++..++..+...+...|+ .+|...++++.+..
T Consensus 759 ~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 759 LEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVK---KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 999888653 3677888888889999999999999999987 345677888888889999998 78999999998888
Q ss_pred CCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhh
Q 010458 452 HVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKIT 497 (510)
Q Consensus 452 ~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~ 497 (510)
+.++..+..+...+...|+ +|...++++.+.+.. |..++..+..+
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 8788888889999999998 899999999886643 66665555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-29 Score=265.24 Aligned_cols=414 Identities=15% Similarity=0.123 Sum_probs=370.5
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|.+.++++.+.. +.+...+..++..+...|++++|.+.|+.+.+.. |.+...+..+...+...|+.++|...+++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88999999988754 5567788889999999999999999999998875 67888999999999999999999999999
Q ss_pred cccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 133 LPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
+....| +...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+++.+..+.+...
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 987766 46788889999999999999999999998754 4467889999999999999999999999998887778889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.++. +...+..+...+..
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHH
Confidence 9999999999999999999999998764 456788999999999999999999999999988644 77888999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.|++++|...|+.+...+ |+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|...|+.++|..+
T Consensus 716 ~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred CCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999998854 555778888999999999999999999998765 44778899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
|+++.+.++ ++...++.+...+...|+ .+|+.+++++.+. .+-+..++..+...+...|++++|..+++++.+.+
T Consensus 793 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 793 YRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL---APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999998764 478889999999999999 8899999999874 33456677888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 452 HVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 452 ~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
+.++.++..+..++.+.|+ +|.+++++|.
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999 9999999985
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-23 Score=188.64 Aligned_cols=370 Identities=16% Similarity=0.183 Sum_probs=309.0
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH-HHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHM 181 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l 181 (510)
|.-.++|..+...+-..|++++|+.+++.+.+..|+ ...|-.+..++...|+.+.|...|.+..+.+ |+.... ..+
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcch
Confidence 334566888888888899999999999999888775 7889999999999999999999998888865 554433 334
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELP 260 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~ 260 (510)
...+-..|++++|...|.+..+..+--..+|+.|...+-..|+...|++.|++..+. .|+ ...|-.|...|-..+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcc
Confidence 445556789999999998888776666788999999999999999999999998765 344 56788899999999999
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
+.|...|.+.....+. ....+..+...|...|+.|.|+..|++..+ ..|+ ...|+.+..++-..|++.+|.+.|.+
T Consensus 269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 9999999988876443 567888899999999999999999999988 4455 46799999999999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC
Q 010458 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p 419 (510)
.....+. .....+.|...|...|.+++|..+|....+..+. -...++.|...|-++|++++|+..|++++ .+.|
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal----rI~P 419 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL----RIKP 419 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH----hcCc
Confidence 9876533 4567788999999999999999999999886332 34578889999999999999999999998 5677
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCH
Q 010458 420 D-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDA 488 (510)
Q Consensus 420 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~ 488 (510)
+ ...|+.+...|-..|+.+.|.+.+.+....+|.-.+.++.|...|...|+ +|++-+++..+ ++||.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 7 45889999999999999999999999999988888899999999999999 88888888865 45554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-23 Score=186.66 Aligned_cols=386 Identities=16% Similarity=0.126 Sum_probs=332.8
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhH-HHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC-SAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l 146 (510)
+--..+|.-+...+-..|++++|+..++.+.+.. |...+.|..+..++...|+.+.|.+.|....+.+|+.... ..+
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 4466789999999999999999999999999875 7788999999999999999999999999999998864433 334
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (510)
...+...|+.++|...|.+..+.. |. ...|..|...+...|+...|++.|++..+..+.-..+|-.|...|-..+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 455566899999999999988865 43 568999999999999999999999999887666788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+.|...|.+..... +.....+..+...|...|.++-|+..|++..+..+. -...|+.|..++-..|++.+|.+.|.+.
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999976653 334677888889999999999999999999987444 4679999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 010458 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC-Y 384 (510)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 384 (510)
.... +......+.+...+...|.++.|..+|....+..+. -....+.|...|-.+|++++|+..|++.++. .|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 8853 224567889999999999999999999998864322 3456889999999999999999999999985 455 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
..|+.+...|-..|+.+.|++.+.+++. +.|. ...++.|...|-..|++.+|+.-+++..+..|..+..|..++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 5899999999999999999999999994 4665 5688999999999999999999999999999987777777776
Q ss_pred HHHH
Q 010458 464 TYAK 467 (510)
Q Consensus 464 ~~~~ 467 (510)
++--
T Consensus 499 ~lq~ 502 (966)
T KOG4626|consen 499 CLQI 502 (966)
T ss_pred HHHH
Confidence 6543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-21 Score=206.19 Aligned_cols=405 Identities=11% Similarity=-0.013 Sum_probs=245.0
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh---hhHH----------
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP---DTCS---------- 144 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~---------- 144 (510)
...+...|++++|+..|++..+.. |.++..+..+..++.+.|++++|+..|++..+..|+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 344555666666776666666653 4566666666666666667777766666666554431 1111
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH---
Q 010458 145 --ALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC--- 219 (510)
Q Consensus 145 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--- 219 (510)
.....+.+.|++++|...|+++.+... .+...+..+...+...|++++|.+.|++..+..+.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 123345566666667666666666532 23445555666666666666666666666655444444444444443
Q ss_pred ---------------------------------------HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 220 ---------------------------------------ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 220 ---------------------------------------~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
...|++++|.+.|++..+.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34445555555555544432 11233344444455555555
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh---------hhHHHHHHHHHhcCCHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND---------AEYTCVISSLVKLGEFE 331 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~ 331 (510)
++|...++++.+..+. +...+..+...+...++.++|...++.+......++. ..+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 5555555554443222 2233333333334445555555544443221111110 01122344556667777
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+|..+++. .+.+...+..+...+.+.|++++|+..|++..+..+. +...+..++..+...|++++|.+.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77776661 2445667778888999999999999999999987543 67788899999999999999999999887
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-H-----HHHHHHHHHHHHcCC--ChHHHHHHHH-hC
Q 010458 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-T-----EIYNSLLRTYAKAGK--MPLIIVERMQ-KD 482 (510)
Q Consensus 412 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~g~--~a~~~~~~m~-~~ 482 (510)
+. -+.+..++..+..++...|++++|.++++++....+.+ + ..+..+...+...|+ +|+..|++.. ..
T Consensus 665 ~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 665 AT---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred cc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 53 22345667778888999999999999999998765532 2 456677888889999 8999988875 34
Q ss_pred CCCC----CHHHHHHHHh
Q 010458 483 NVQM----DAETQKVLKI 496 (510)
Q Consensus 483 ~~~p----d~~t~~~l~~ 496 (510)
|+.| +..++..+.+
T Consensus 742 ~~~~~~p~~~~~~~~l~~ 759 (1157)
T PRK11447 742 GITPTRPQDNDTFTRLTR 759 (1157)
T ss_pred CCCCCCCCCchHHHHHhc
Confidence 4432 2234555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-21 Score=203.86 Aligned_cols=418 Identities=11% Similarity=0.009 Sum_probs=288.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC---------------cccChh---hH----
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD---------------IKLVSG---DY---- 110 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------~~~~~~---~~---- 110 (510)
++|.+.++++.+.. |-+...+..+...+...|++++|+..++++.+.+. .+.++. .+
T Consensus 164 ~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l 242 (1157)
T PRK11447 164 PEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYL 242 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence 88999999998875 55777888999999999999999999998754320 000000 00
Q ss_pred ------------------------------HHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHH
Q 010458 111 ------------------------------AVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEA 159 (510)
Q Consensus 111 ------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 159 (510)
......+...|++++|+..|++..+..| ++..+..+..++.+.|++++|
T Consensus 243 ~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA 322 (1157)
T PRK11447 243 QVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARA 322 (1157)
T ss_pred HHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 0123455677999999999999988877 578889999999999999999
Q ss_pred HHHHHHHHhCCCCC-CcchHH------------HHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 160 EALMEKMSECGFLK-CPLPYN------------HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 160 ~~~~~~~~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
+..|++..+..... ....|. .....+.+.|++++|...|++..+..+.+...+..+..++...|+++
T Consensus 323 ~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 323 VAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred HHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999988765221 111222 22445678899999999999999887778888888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH------------------------------------------HhcCChHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLY------------------------------------------IKMELPEKAA 264 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~------------------------------------------~~~g~~~~A~ 264 (510)
+|++.|+++.+.. +.+...+..+...| ...|++++|+
T Consensus 403 eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 403 AAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999987653 22344444444333 3345555555
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
+.|++..+..+. +...+..+...|.+.|++++|...++++...... +...+..+...+...++.++|...++.+....
T Consensus 482 ~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 482 ELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 555555554332 3444455555555555555555555555442211 22222222333344555555555555433211
Q ss_pred CCCCc---------chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 010458 345 GTGDP---------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415 (510)
Q Consensus 345 ~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 415 (510)
..++. ..+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|++.|+++++.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-- 632 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-- 632 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 11111 0112334556667777777777661 1335566778888999999999999999999973
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 416 KWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 416 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
.+.+...+..++..+...|++++|.+.++.+.+..+.++..+..+..++...|+ +|.++++++...
T Consensus 633 -~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 633 -EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 344678889999999999999999999999998888788888889999999999 899999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=189.61 Aligned_cols=398 Identities=12% Similarity=0.022 Sum_probs=293.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~ 151 (510)
.+......+.+.|++++|+..|+...+.. |++..|..+..++.+.|++++|++.++...+..|+ ...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35566778889999999999999998764 56788999999999999999999999999988774 678899999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCC-------------------------
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS------------------------- 206 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------------- 206 (510)
..|++++|+..|......+.. +......++..+... .+........+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 999999999888766543211 111111111111100 01111111111100
Q ss_pred -------C-ChhHHHHHHHHH---HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 207 -------P-DVVTYNLWLAAC---ASQNDKETAEKAFLELKKTK-IDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 207 -------~-~~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
+ ....+..+...+ ...+++++|.+.|++..+.+ ..| ....|..+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0 001111111111 22467899999999988764 223 4566888888999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHH
Q 010458 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353 (510)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (510)
.+. +...|..+...+...|++++|...|+++..... .+...+..+...+...|++++|...|++..+..+ .+...+.
T Consensus 361 ~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~ 437 (615)
T TIGR00990 361 DPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHI 437 (615)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHH
Confidence 443 466888899999999999999999999987532 2457788889999999999999999999987653 3566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC---CH-HHHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP---DH-RLITAAYN 429 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p---~~-~~~~~l~~ 429 (510)
.+..++.+.|++++|...|++..+..+ .+...+..+...+...|++++|++.|++++...+...+ +. ..++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 888999999999999999999988642 35778889999999999999999999999864111111 11 11222223
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
.+...|++++|.+++++..+.++.+...+..+...+.+.|+ +|+..|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456999999999999999888888899999999999999 899999988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=191.51 Aligned_cols=297 Identities=15% Similarity=0.135 Sum_probs=147.5
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLYIKMELPEK 262 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 262 (510)
...|++++|...|+++.+..+.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444444333444444444444555555555555544443221111 1234444555555555555
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND----AEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
|..+|+++.+..+ ++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...|+
T Consensus 126 A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555544321 23444555555555555555555555555443222111 123334444555566666666665
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......++..++.+|...|++++|...++++.+. .
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~----~ 279 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE----Y 279 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C
Confidence 555432 12233455555566666666666666666655432222344555666666666666666666666542 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCC--ChHHHHHHHHhCCCCCCHH
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK---AGK--MPLIIVERMQKDNVQMDAE 489 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~--~a~~~~~~m~~~~~~pd~~ 489 (510)
|+...+..++..+.+.|++++|..+++++.+..|. ...++.++..+.. .|+ +++.++++|.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45555555666666666666666666666555432 2345545544443 223 5566666666555555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=191.37 Aligned_cols=294 Identities=13% Similarity=0.048 Sum_probs=154.7
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhCCC
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC---PLPYNHMLNLYISNGQ 190 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 190 (510)
..+...|++++|...|+++.+.+|+ ..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344556666666666666655543 44556666666666666666666666555321111 1234555555556666
Q ss_pred cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 010458 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
+++|..+|+++.+..+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666666666655544445555556666666666666666666665544322211 1233445555556666666666
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
|+++.+..+. +...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 6665554322 334455555555566666666666665554322211234455555555555555555555555543 2
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhc
Q 010458 347 GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK---KGQMEKVLECFKKAIGS 413 (510)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 413 (510)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.+++++.+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 33334455555555555555555555555544 3455555555544442 33555555555555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-20 Score=188.57 Aligned_cols=367 Identities=11% Similarity=-0.008 Sum_probs=284.2
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHh
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQ 152 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 152 (510)
...++..+.+.|++++|+.+++...... |..+..+..++......|++++|...++++....|+ +..+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4566778889999999999999998874 677778888888888899999999999999988774 6788888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+.+...+..+. .+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHH
Confidence 999999999999998864 225667888899999999999999999988766555555554443 477889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHh
Q 010458 233 LELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE----VLRIWKKMMSL 308 (510)
Q Consensus 233 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 308 (510)
+.+.+....++...+..+...+.+.|++++|...++++.+..+. +...+..+...+...|++++ |...++++...
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 99877643344555566678888999999999999999987544 67788889999999999885 79999998875
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH
Q 010458 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY-TTW 387 (510)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 387 (510)
.+ .+...+..+...+...|++++|...++...+..+. +...+..+..++...|++++|...++++.+.+ |+. ..+
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 32 24567888899999999999999999998876433 45667788899999999999999999998864 443 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
..+..++...|++++|...|+++.+......|. ......+-.++...+..++...+..++.-
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 445677889999999999999998652111111 11233344444455555544455555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-20 Score=189.62 Aligned_cols=414 Identities=11% Similarity=0.017 Sum_probs=269.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 146 (510)
+.++....-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++.....| ++..+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4555556666667777788888888877776532 45555677777788888888888888888776655 35666777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
+..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+.+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 777778888888888888877653 22344 7777777778888888888888887776667777677777777777777
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-cCCCChh-hHH----HHH
Q 010458 227 TAEKAFLELKKTKIDPDW------ISYSTLTSLYI-----KMELP---EKAATTLKEMEKR-TCRKNRV-AYS----SLL 286 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~l~ 286 (510)
.|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 78777766543 2221 01112222221 11223 6677777777654 1222221 111 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---CcchHHHHHHHHHhc
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAK-MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG---DPRVPNILLAAYINR 362 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 362 (510)
..+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|+..|+.+.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445667888888888887776432 222 22224667777888888888888776533211 122345556667778
Q ss_pred CCHHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 363 NQLEMAESFYNRLVTKGI-----------KPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
|++++|..+++.+.+..+ .|+. ..+..+...+...|++++|++.++++.. ..+.+...+..+.
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 888888888887776521 1221 2345566677778888888888888876 3444566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHH
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVL 494 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l 494 (510)
..+...|++++|++.++++....|.+...+..++..+.+.|+ .|..+++++.+. .|+......+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 888888888888888888888877777777777777777777 778888887752 3444443333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-20 Score=184.49 Aligned_cols=376 Identities=9% Similarity=-0.007 Sum_probs=299.5
Q ss_pred HHhccChHHHHHHHHHHHHcc-CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHH
Q 010458 81 LRKLKRYKHALEVCEWMELQY-DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAE 158 (510)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 158 (510)
+.++.+|+...-+|....++. .-..+......++..+.+.|+.++|..+++......|+ +..+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 456777777766676655431 01123344566777888999999999999999888775 6677777788888999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 159 AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 159 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
|...|+++.+... .+...+..+...+...|++++|...+++..+..+.+...+..+..++...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999998762 256678889999999999999999999999887778899999999999999999999999988665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHH
Q 010458 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++++..... .+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 432 33344333 34788999999999999998875444555666677889999999999999999988642 2456778
Q ss_pred HHHHHHHhcCCHHH----HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 319 CVISSLVKLGEFEK----AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 319 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.+...+...|++++ |...|+.+.+..+ .+...+..+...+...|++++|...+++..+..+. +...+..+...+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 88899999999986 8999999987653 36778899999999999999999999999987543 556778889999
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHV-STEIYNSLLRTYA 466 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 466 (510)
.+.|++++|...|+++... .|+.. .+..+..++...|++++|...|++..+..|. .+..|...+..|.
T Consensus 329 ~~~G~~~eA~~~l~~al~~----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 9999999999999999864 45543 3444677899999999999999999988776 3444444444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-19 Score=183.91 Aligned_cols=411 Identities=10% Similarity=0.003 Sum_probs=309.1
Q ss_pred CCCCCccHHHHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHH
Q 010458 34 GAGGRDTLGRRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111 (510)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (510)
....+..+.-.+.+....+ .+|.+++.+..... +.+...+..+...+...|++++|+++++...+.. |.++..+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 3445555554444444444 88888888877632 5566679999999999999999999999998874 67788888
Q ss_pred HHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 112 VHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 112 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
.++.++...|++++|+..++++.+..|+ +. +..+..++...|+.++|+..++++.+.... +...+..+..++...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999888774 56 888999999999999999999999987522 44566777888888999
Q ss_pred cCcHHHHHHHHHhCCCCCh------hHHHHHHHHHHh-----cCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHH
Q 010458 191 LDKVPQMLQELKKNTSPDV------VTYNLWLAACAS-----QNDK---ETAEKAFLELKKT-KIDPDWI-SY----STL 250 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~l 250 (510)
.++|++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+ ...
T Consensus 166 ~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 166 SAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred hHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 9999999987664 2221 122222332221 2234 7788888888753 2223221 11 111
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHh
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVK 326 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 326 (510)
+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++....... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33456779999999999999987532 332 22335778999999999999999987643221 12345666667889
Q ss_pred cCCHHHHHHHHHHHHhccC-----------CCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010458 327 LGEFEKAENIYDEWESISG-----------TGD---PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 392 (510)
.|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|+.+++++....+. +...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999986532 122 123456777888999999999999999987543 6778889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
.+...|++++|++.+++++.. .|+ ...+...+..+...|++++|..+++++.+..|.++.+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l----~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL----EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999963 455 6677788888999999999999999999998886544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-18 Score=174.20 Aligned_cols=393 Identities=11% Similarity=-0.017 Sum_probs=288.1
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|...+++.++ ..|+...|..+..+|.+.|++++|++.++...+.+ |.....+..+..++...|++++|+..|..
T Consensus 144 ~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 144 NKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999998876 46778889999999999999999999999999875 67788999999999999999999988876
Q ss_pred cccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHh---------------------------CCCCCC-cchHHHHHH
Q 010458 133 LPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSE---------------------------CGFLKC-PLPYNHMLN 183 (510)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------------~~~~p~-~~~~~~l~~ 183 (510)
+...++ +......++..+........+...++.-.. ....|+ ...+..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 654422 111111111111111001111111110000 000000 001111111
Q ss_pred HH---HhCCCcCcHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 184 LY---ISNGQLDKVPQMLQELKKNT--SP-DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257 (510)
Q Consensus 184 ~~---~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 257 (510)
.+ ...+++++|.+.|+...... .| ....++.+..++...|++++|...|++..+.. +.....|..+...+...
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHC
Confidence 11 12357889999999988752 33 56788889999999999999999999988763 23466888899999999
Q ss_pred CChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
|++++|...|+++.+..+. +...|..+...+...|++++|...|++...... .+...+..+..++.+.|++++|...|
T Consensus 379 g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999887544 678899999999999999999999999988532 24566778888999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT------TWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+...+.. +.+...++.+...+...|++++|...|++..+.....+.. .++.....+...|++++|.+++++++
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9998653 3457788999999999999999999999998864321111 12222233444799999999999998
Q ss_pred hccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 412 GSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 412 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
.. .+.+...+..+...+...|++++|...|++..+.......
T Consensus 536 ~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 536 II---DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 64 2234457888999999999999999999999887654333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-17 Score=167.66 Aligned_cols=440 Identities=12% Similarity=0.037 Sum_probs=328.1
Q ss_pred cCCCCCccHHHHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhH
Q 010458 33 KGAGGRDTLGRRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110 (510)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (510)
..+..++...-..+.....+ ..|.+.|++..+.. +-+......++..+...|+.++|+..+++.... .+......
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~l 105 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGL 105 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHH
Confidence 33446666666666666555 88999999988754 323223338888888999999999999998832 23344444
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG 189 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 189 (510)
..+...+...|++++|+++|+++.+..|+ +..+..++..+...++.++|++.++++.... |+...+..++..+...+
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~ 183 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcc
Confidence 44567888999999999999999999874 7778888899999999999999999998865 66555644444444456
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHH-----HhcC
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY------STLTSLY-----IKME 258 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------~~l~~~~-----~~~g 258 (510)
+..+|++.++++.+..+.+...+..+..++.+.|-...|.++..+-.+. +.+....+ ..+++.- ....
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 6666999999999988778999999999999999999998877653221 11111111 1111110 0112
Q ss_pred C---hHHHHHHHHHHHHc-cCCCChh-h----HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 259 L---PEKAATTLKEMEKR-TCRKNRV-A----YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 259 ~---~~~A~~~~~~~~~~-~~~~~~~-~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
+ .+.|+.-++.+... +..|... . ..-.+-++...++..++++.|+.+...+.+....+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 2 34455555665542 2223221 2 223456778899999999999999988877677789999999999999
Q ss_pred HHHHHHHHHHHHhccC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCCHH-HHHHH
Q 010458 330 FEKAENIYDEWESISG-----TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI-------------KPCYT-TWELL 390 (510)
Q Consensus 330 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l 390 (510)
+++|+.+|+.+..... .++......|..+|...+++++|..+++++.+..+ .||-. .+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 9999999999876432 22333357789999999999999999999987322 12222 34456
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+..+...|+..+|++.++++.. .-+-|......+...+...|.+.+|++.++......|.+..+....+.++...|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence 7778899999999999999986 4566888999999999999999999999999999888899999999999999999
Q ss_pred --ChHHHHHHHHh
Q 010458 471 --MPLIIVERMQK 481 (510)
Q Consensus 471 --~a~~~~~~m~~ 481 (510)
.|..+.+...+
T Consensus 500 ~~~A~~~~~~l~~ 512 (822)
T PRK14574 500 WHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHHh
Confidence 78788877765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-17 Score=167.67 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=177.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45566666666665 7888888888877765 355444444455556899999999999987553 444555666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
++...|+.++|...++...+..+ .+...+..+.......|++++|...+++..+. .|+...+..+...+.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 88889999999999999887542 22223333333444569999999999999986 4567888899999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
|+..+++++.. .+.+...+..+..++...|++++|...+++..+..|.++..+..+..++...|+ +|...+++..
T Consensus 628 A~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999963 334566778888899999999999999999999999899999999999999999 8888899887
Q ss_pred hC
Q 010458 481 KD 482 (510)
Q Consensus 481 ~~ 482 (510)
+.
T Consensus 705 ~l 706 (987)
T PRK09782 705 DD 706 (987)
T ss_pred hc
Confidence 54
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-17 Score=168.48 Aligned_cols=413 Identities=11% Similarity=0.037 Sum_probs=262.2
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|...|+..++.. |-+..++..+...|.+.|++++|+..+++..+.+ |.+...+..+ . ..+++++|..++++
T Consensus 61 ~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a---~i~~~~kA~~~ye~ 133 (987)
T PRK09782 61 ATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-A---AIPVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-H---HhccChhHHHHHHH
Confidence 77888888877765 4457778888888888888888888888888764 3333333333 2 22777788888887
Q ss_pred cccCCCC-hhhHHHH----------------------------------------HHHHHhCCCHHHHHHHHHHHHhCCC
Q 010458 133 LPDKMRG-PDTCSAL----------------------------------------LHSYVQNKKSAEAEALMEKMSECGF 171 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l----------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (510)
+....|+ ..++..+ ...|.+.|++++|++++.++.+.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 7776654 3333333 3334444455555555555544431
Q ss_pred CCCcchHHHHHHHHHh-CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHH--
Q 010458 172 LKCPLPYNHMLNLYIS-NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID-PDWISY-- 247 (510)
Q Consensus 172 ~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~-- 247 (510)
. +..-...|..+|.. .++ +++..+++. ..+.+...+..+...+.+.|+.++|.+++.++...... |...+|
T Consensus 214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~---~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ---GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred C-CHHHHHHHHHHHHHhhCH-HHHHHHhch---hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 1 22223334444444 233 333333221 11235566667777788888888888888886432211 222222
Q ss_pred H----------------------------HHHH-----------------------------------------------
Q 010458 248 S----------------------------TLTS----------------------------------------------- 252 (510)
Q Consensus 248 ~----------------------------~l~~----------------------------------------------- 252 (510)
+ .++.
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 0 0001
Q ss_pred ----------------HHHhcCChHHHHHHHHHHHHc-c-C---------------------------------------
Q 010458 253 ----------------LYIKMELPEKAATTLKEMEKR-T-C--------------------------------------- 275 (510)
Q Consensus 253 ----------------~~~~~g~~~~A~~~~~~~~~~-~-~--------------------------------------- 275 (510)
...+.|+.++|.++|+..... + -
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 112234455555555443331 0 0
Q ss_pred -----------------------CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 276 -----------------------RK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 276 -----------------------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
++ +...|..+..++.. +++++|...+.+.... .|+......+...+...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH
Confidence 11 22334444444444 5566677766666553 34443333344455678999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
++|...|+++... +|+...+..+..++.+.|+.++|...+++..+.++. +...+..+.......|++++|...++++
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999887643 344445666777888899999999999998876422 3333334444455669999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCH
Q 010458 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDA 488 (510)
Q Consensus 411 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~ 488 (510)
++. .|+...+..+..++.+.|++++|...+++.....|.++..++.+..++...|+ +|+..+++..+. .|+.
T Consensus 603 L~l----~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~ 676 (987)
T PRK09782 603 LNI----APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDD 676 (987)
T ss_pred HHh----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 854 67888999999999999999999999999999999999999999999999999 899999988764 4554
Q ss_pred H
Q 010458 489 E 489 (510)
Q Consensus 489 ~ 489 (510)
.
T Consensus 677 ~ 677 (987)
T PRK09782 677 P 677 (987)
T ss_pred H
Confidence 4
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-16 Score=153.03 Aligned_cols=406 Identities=15% Similarity=0.078 Sum_probs=201.5
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--hhhHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--PDTCSAL 146 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l 146 (510)
++...+.|...+.-.|+++.++.+...+..... -+.-...|..+.+++-..|++++|..+|....+..++ ...+-.+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 444455555555555555555555444443210 0112233445555555555555555555544444333 2233344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC----CcCcHHHHHHHHHhCCCCChhH-----------
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG----QLDKVPQMLQELKKNTSPDVVT----------- 211 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~----------- 211 (510)
...+.+.|+.+.+...|+.+.+.. +-+..+...|...|...+ ..++|..++.+..+..+.|...
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 455555555555555555544432 112233333333333332 2233333333333333334444
Q ss_pred ---------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHH
Q 010458 212 ---------------------------YNLWLAACASQNDKETAEKAFLELKKT---KIDPDW------ISYSTLTSLYI 255 (510)
Q Consensus 212 ---------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~l~~~~~ 255 (510)
.|.+...+...|++..|...|...... ...++. .+--.+..++-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 444444444445555555444443322 011111 11112333333
Q ss_pred hcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010458 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 335 (510)
..++.+.|.+.|..+.+..+. -+..|.-++......++..+|...++..... ...++..++.+...+.+..++..|.+
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhccccc
Confidence 334444444444444443111 1222222222222234444555555554433 12233334444445555555555555
Q ss_pred HHHHHHhcc-CCCCcchHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 336 IYDEWESIS-GTGDPRVPNILLAAYIN------------RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 336 ~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
-|..+.+.- ..+|+.+.-.|...|.. .+..++|+++|.+.++..+. |...-+-+.-.++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence 444443321 12344444445554432 23567777777777776543 66666777777788888888
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC--ChHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK--MPLIIVER 478 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~a~~~~~~ 478 (510)
|..+|.+..+. ..-...+|..+.++|..+|++-.|+++|+...+.... ++.+...|.+++.+.|. ++...+..
T Consensus 665 A~dIFsqVrEa---~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 665 ARDIFSQVREA---TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHH---HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88888887764 2234567777788888888888888888776554443 67778888888888887 66655555
Q ss_pred HHhC
Q 010458 479 MQKD 482 (510)
Q Consensus 479 m~~~ 482 (510)
....
T Consensus 742 a~~~ 745 (1018)
T KOG2002|consen 742 ARHL 745 (1018)
T ss_pred HHHh
Confidence 5443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=146.73 Aligned_cols=417 Identities=14% Similarity=0.043 Sum_probs=283.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhccChHHHHHHHHHHHHccCccc-Ch----hhHHHHHHHHHHhcChhhH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELN-RIVRELRKLKRYKHALEVCEWMELQYDIKL-VS----GDYAVHLDLISKIRGLSSA 126 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~g~~~~A 126 (510)
.+|...++..++...-|+.-.+. -+...+.+.+.+.+|+.+|+..... +|. +- ...+.+...+.+.|+++.|
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhh
Confidence 56666666666665556554432 3345667778888899988887765 221 11 2344455566788999999
Q ss_pred HHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH--------HHHHHH---------HHhCC
Q 010458 127 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY--------NHMLNL---------YISNG 189 (510)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--------~~l~~~---------~~~~g 189 (510)
+.-|+...+..|+-.+-..|+-++..-|+-++..+.|.+|......||..-| ..|+.- .-+.+
T Consensus 296 insfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 296 INSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred HhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 9999999888888655444555555678999999999999865433333222 122211 11111
Q ss_pred --CcCcHHHHHHHHHhC-CCCChhH---H------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010458 190 --QLDKVPQMLQELKKN-TSPDVVT---Y------------------NLWLAACASQNDKETAEKAFLELKKTKIDPDWI 245 (510)
Q Consensus 190 --~~~~a~~~~~~~~~~-~~~~~~~---~------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 245 (510)
+.++++-.-.++..- ..|+-.. | -.-..-+.+.|+++.|.++++-+.+..-..-..
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa 455 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA 455 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence 112222222222211 1221100 0 011234778889998888887765433211111
Q ss_pred HHHHH------------------------------------HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 246 SYSTL------------------------------------TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 246 ~~~~l------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
.-+.| .+.....|++++|.+.|++.......... ..-.+.-.+
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-alfniglt~ 534 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-ALFNIGLTA 534 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-HHHHhcccH
Confidence 11111 01112357899999999999876333222 222334456
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
-..|+.++|++.|-++... ...+..+...+...|....+..+|++++.+... -++.|+.+...|...|-+.|+-..|.
T Consensus 535 e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhh
Confidence 7789999999999888664 334667788888899999999999999988764 34668889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 010458 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL-EEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 448 (510)
+.+-+-.+. ++.+..+...|...|....-+++++.+|+++. -+.|+..-|..++..| .+.|++..|..+++.+.
T Consensus 613 q~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa----liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 613 QCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA----LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH----hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 887665554 45688899999999999999999999999987 5799999998888665 56899999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHH
Q 010458 449 NAGHVSTEIYNSLLRTYAKAGK-MPLIIVERM 479 (510)
Q Consensus 449 ~~~~~~~~~~~~l~~~~~~~g~-~a~~~~~~m 479 (510)
+.-|.+.+....|++.+...|- ++.++-+++
T Consensus 688 rkfpedldclkflvri~~dlgl~d~key~~kl 719 (840)
T KOG2003|consen 688 RKFPEDLDCLKFLVRIAGDLGLKDAKEYADKL 719 (840)
T ss_pred HhCccchHHHHHHHHHhccccchhHHHHHHHH
Confidence 9988899999999999999887 554444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-15 Score=133.06 Aligned_cols=437 Identities=13% Similarity=0.110 Sum_probs=300.1
Q ss_pred HHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---ccChHHHHHHHHHHHHccCcccChhhHHHHHHHH
Q 010458 43 RRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRK---LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117 (510)
Q Consensus 43 ~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (510)
.+++..+.++ .++--+++.|.+.|++.+...-..|++..+- ..-+-.-++-|-.|...+ ..+..+|
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW------- 190 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW------- 190 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc-------
Confidence 3444555555 7777788888888888877765555543332 222212223333344333 1122222
Q ss_pred HHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH
Q 010458 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 197 (510)
+.|.+. .-+|+..++ .+.++..+|.++++--..+.|.++|++-.....+.+..+||.+|.+-.-.. ..++
T Consensus 191 -K~G~vA--dL~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~L 260 (625)
T KOG4422|consen 191 -KSGAVA--DLLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKL 260 (625)
T ss_pred -ccccHH--HHHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHH
Confidence 224333 334454443 578999999999999999999999999998888889999999997755332 2788
Q ss_pred HHHHHhC-CCCChhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH
Q 010458 198 LQELKKN-TSPDVVTYNLWLAACASQNDKET----AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLKEME 271 (510)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 271 (510)
+.+|... ..||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 8999887 89999999999999999998765 56778889999999999999999999999988855 455555555
Q ss_pred Hc----cCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCh---hhHHHHHHHHHhcCCHHHHHHH
Q 010458 272 KR----TCRK----NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF----AKMND---AEYTCVISSLVKLGEFEKAENI 336 (510)
Q Consensus 272 ~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 336 (510)
.. .++| |...|..-+..|.+..+.+-|.++..-+.... +.|+. .-|..+..+.|.....+.....
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2222 44557777888889999998988877654321 22332 2367778888899999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------HH-----
Q 010458 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QM--------EK----- 402 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~----- 402 (510)
|+.|.-.-+-|+..+...++++....|.++-..+++..++..|...+...-.-++..+++.+ ++ ..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 99999777778888999999999999999999999999998886656665555555555544 11 11
Q ss_pred HHHHH---HHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHH---HHHHHHHHcCC--Ch
Q 010458 403 VLECF---KKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH--VSTEIYN---SLLRTYAKAGK--MP 472 (510)
Q Consensus 403 a~~~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~l~~~~~~~g~--~a 472 (510)
|..++ +....++..........+.++-.+.+.|..++|.+++..+.+.+- +-....| -+++.-.+... .|
T Consensus 501 aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11111 111111112344566777788889999999999999999965543 2233455 44444444444 78
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 473 LIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 473 ~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
...++-|...+..--.---+-+..-|
T Consensus 581 ~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 581 IEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 88888887665543332334444444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-15 Score=151.31 Aligned_cols=397 Identities=11% Similarity=0.035 Sum_probs=297.2
Q ss_pred cCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHH
Q 010458 51 AKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130 (510)
Q Consensus 51 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 130 (510)
..++|...+++.... .+.+......+...+...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.+
T Consensus 83 ~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 83 RDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred CcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 338888888887721 13334444455678888999999999999999985 778888888889999999999999999
Q ss_pred HhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChh
Q 010458 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVV 210 (510)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 210 (510)
+++.+..|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.....+...
T Consensus 160 ~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 160 TELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred HHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 9999998876666555555555677767999999999976 225667788899999999999999888765443333221
Q ss_pred HH------HHHHHHH---H--hcCC---HHHHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHH
Q 010458 211 TY------NLWLAAC---A--SQND---KETAEKAFLELKKT-KIDPDW-ISY----STLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 211 ~~------~~l~~~~---~--~~~~---~~~a~~~~~~m~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
-+ ...++.- . ...+ .+.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 11 1111111 0 1122 34455555555442 112322 222 23455778899999999999999
Q ss_pred HHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 010458 271 EKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA-----KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345 (510)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
...+.+....+-..+..+|...+++++|..+++.+..... .++......|.-++...+++++|..+++.+.+..+
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9887665566888999999999999999999999976532 12233357788899999999999999999987422
Q ss_pred -----------CCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 346 -----------TGDP---RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 346 -----------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.|+. ..+..++..+...|++.+|++.++++....+. |......+...+...|.+.+|.+.++.+.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1221 12345677788999999999999999987544 88899999999999999999999997776
Q ss_pred hccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 412 GSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 412 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
. +.| +..+....+.++...|++.+|..+.+.+.+..|.+..
T Consensus 478 ~----l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 478 S----LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred h----hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 4 345 4567778888999999999999999999999887653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-16 Score=149.40 Aligned_cols=446 Identities=13% Similarity=0.120 Sum_probs=306.4
Q ss_pred HHHHhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---cChHHHHHHHHHHHHccCcccChhhHHHHHHHHH
Q 010458 42 GRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKL---KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS 118 (510)
Q Consensus 42 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (510)
.+..+.-+.....|...|++..+-+ |-+..++-.|...-... ..+..++..+...-..+ +.+|.+.+.+...+.
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFY 281 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHh
Confidence 3444444455589999999988865 33455554444433333 45667888888887765 789999999999999
Q ss_pred HhcChhhHHHHHHhcccCCC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhCCCcC
Q 010458 119 KIRGLSSAENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQLD 192 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 192 (510)
..|+++.+..+.+.+..... -...|-.+..+|...|++++|...|.+..+.. |+.. .+--|...+.+.|+++
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHH
Confidence 99999999999888876532 25678899999999999999999998888765 5543 3455788999999999
Q ss_pred cHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQN----DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+...|+.+....+.+..+..++...|...+ ..+.|..++.+..+.- +.|...|-.+...+-.. ++..++..|.
T Consensus 360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~ 437 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYG 437 (1018)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 9999999999988888899999988888775 4566777777765543 44666776665555443 3444466655
Q ss_pred HHH----HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCh------hhHHHHHHHHHhcCCHHHHHH
Q 010458 269 EME----KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMND------AEYTCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 269 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~ 335 (510)
.+. ..+-.+.+...|.+...+...|++++|...|+..... ...++. .+-..+....-..++.+.|.+
T Consensus 438 ~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 438 NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 443 3344466777888888888888888888888777654 112222 122223334444455555555
Q ss_pred HHHHHHhccC---------------------------------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 010458 336 IYDEWESISG---------------------------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTK-GIK 381 (510)
Q Consensus 336 ~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 381 (510)
.|..+.+..+ ..++..+..+...+.+...+..|..-|....+. ...
T Consensus 518 ~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 518 MYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 5555554321 223334444444555555555555544443331 112
Q ss_pred CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 382 PCYTTWELLTWGYLK------------KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 382 p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+|..+...|.+.|.+ .+..++|+++|.++++ ..+-|...-+.+.-+++..|++.+|..+|.+..+
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 455555555554432 2457789999999886 4456777888889999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCC-CCCHHHHHHHHhh
Q 010458 450 AGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNV-QMDAETQKVLKIT 497 (510)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~-~pd~~t~~~l~~~ 497 (510)
.......+|-.+..+|..+|+ .|+++|+...+.-. .-++.....|-++
T Consensus 675 a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 675 ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 877677899999999999999 99999998766444 3344445554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-13 Score=121.12 Aligned_cols=376 Identities=15% Similarity=0.124 Sum_probs=252.6
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC--CCChhhHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK--MRGPDTCS 144 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 144 (510)
.+.+..+|..+|.++|+....+.|.+++++..... ...+..+|+.++.+-.-... .+++.+|... .||..++|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 46677889999999999999999999999988765 57888999998877654333 5666776655 58999999
Q ss_pred HHHHHHHhCCCHHH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCc-HHHHHHHHHhC-----CC---C-Chh
Q 010458 145 ALLHSYVQNKKSAE----AEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK-VPQMLQELKKN-----TS---P-DVV 210 (510)
Q Consensus 145 ~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~-----~~---~-~~~ 210 (510)
+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.++... .+ | |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998865 46778889999999999999999999998887654 55556555543 22 2 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTK----IDPDW---ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
.|...+..|.+..|.+.|.++..-+.... +.|+. .-|..+....|+....+.....|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 78888899999999999988876654321 22331 235667778888889999999999998887788888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-
Q 010458 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR- 362 (510)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 362 (510)
.++++....+.++-.-++|.++...|....... -++++..+.+..+.|+...-..+-....++
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999998887654332222 223334444333344322111111111111
Q ss_pred CCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 010458 363 NQL-EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 363 g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 439 (510)
-++ +.....-.++.... ......+.++-.+.+.|..++|.++|....+.-.. ..|.......+++.-...+....
T Consensus 502 ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 011 11112222334332 34455666666677777777777777777544111 22333334455556666677777
Q ss_pred HHHHHHHHHhCCCCCHH-HHHHHHHHH
Q 010458 440 AEHLLVTLRNAGHVSTE-IYNSLLRTY 465 (510)
Q Consensus 440 A~~~~~~~~~~~~~~~~-~~~~l~~~~ 465 (510)
|..+++-+...+.+.-+ .-+.+...|
T Consensus 580 A~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 77777777666665333 333343333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-12 Score=120.84 Aligned_cols=334 Identities=12% Similarity=0.042 Sum_probs=211.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.+|+.-.+.|.+.+.++-|..+|....+.- +-+...|......=-..|..++...+|++.....+.....|-....-+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 344444455555555666666665555532 1233344444444444455555555666555554445555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (510)
..||+..|..++.+..+.. +.+...|-.-+..-.....++.|..+|.+.... .|+...|.--+...--.++.++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 5666666666666655543 224555656666666666666666666666553 4455555555555555566666666
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 301 IWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380 (510)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 380 (510)
++++..+. .+.-...|..+.+.+-+.++++.|.+.|..-.+.. +..+..|-.|...=-+.|++-.|..++++..-+++
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 66666553 22123445566666666666666666666554332 33444566666666666777777777777776654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc---------------------------CCCCCCHHHHHHHHHHHHH
Q 010458 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV---------------------------RKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~p~~~~~~~l~~~~~~ 433 (510)
. +...|-..|+.-.+.|+.+.|..+..++++.. +...-|+.+...+...+..
T Consensus 751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 751 K-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 4 66777777777777888777777777666531 1223356677778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh
Q 010458 434 QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK 481 (510)
Q Consensus 434 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~ 481 (510)
..+++.|++.|.+..+.++..-++|..+...+.+.|. ...+++.....
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8999999999999999999988999999999999997 55667776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-13 Score=132.57 Aligned_cols=369 Identities=16% Similarity=0.133 Sum_probs=270.8
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhC
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQN 153 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 153 (510)
-.....+...|+.++|.+++.++.+.. |..+..|..+..+|-..|+.+++...+-.+....| |...|..+.....+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 334444455599999999999999885 78889999999999999999999998877766655 578899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC-ChhH----HHHHHHHHHhcCCHHHH
Q 010458 154 KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP-DVVT----YNLWLAACASQNDKETA 228 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~----~~~l~~~~~~~~~~~~a 228 (510)
|++++|.-.|.+..+... ++...+---+..|-+.|+...|.+.|.++....+| |..- --.++..+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999998752 24444445567788899999999999999888555 3222 23345667777777888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC---------------------------CCChh
Q 010458 229 EKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC---------------------------RKNRV 280 (510)
Q Consensus 229 ~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~ 280 (510)
.+.++..... +-..+...++.++..+.+...++.|......+..... .++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 8888886552 2234556788888999999999999888887776211 11222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (510)
. -.++-++...+..+....+..........| +...|.-+..++...|++..|..+|..+.......+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 122233344444444444555555554333 3456888999999999999999999999876555667789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc------CCCCCCHHHHHHHHHHHH
Q 010458 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV------RKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~p~~~~~~~l~~~~~ 432 (510)
|...|..++|.+.|+..+...+. +...-..|...+.+.|+.++|.+.+..+..-. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 99999999999999999986432 45566677788889999999999998854210 135566666667777788
Q ss_pred HcCCHHHHHHHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLR 448 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~ 448 (510)
+.|+.++-..+..+|.
T Consensus 538 ~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 538 QVGKREEFINTASTLV 553 (895)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 8888877655555444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-15 Score=131.30 Aligned_cols=417 Identities=14% Similarity=0.095 Sum_probs=280.2
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC------hhhHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG------PDTCSAL 146 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~l 146 (510)
.+.-|...|..+....+|+..|+-+.+..-+|.....-..+...+.+.+.+.+|+++++.....-|+ ..+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445556666677888999999988876545444444456778888999999999999887766443 3456667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CC------------CChhHHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TS------------PDVVTYN 213 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~------------~~~~~~~ 213 (510)
...+.+.|.++.|+.-|+...+.. |+..+-..|+-++...|+.++..+.|.+|... .. |+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 777889999999999999988765 88776666666777789999999999998754 22 2222222
Q ss_pred HHH-----HHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH---H------------------HHHHHHHHhcCChHHHHH
Q 010458 214 LWL-----AACASQND--KETAEKAFLELKKTKIDPDWIS---Y------------------STLTSLYIKMELPEKAAT 265 (510)
Q Consensus 214 ~l~-----~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~---~------------------~~l~~~~~~~g~~~~A~~ 265 (510)
..+ .-.-+.+. .+.++-.--++...-+.|+-.. | -.-..-+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 222 22222221 1222211122222222332111 1 012346889999999999
Q ss_pred HHHHHHHccCCCChhhHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHHhc
Q 010458 266 TLKEMEKRTCRKNRVAYSSLL------------------------------------SLYTNMGYKDEVLRIWKKMMSLF 309 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~~~~~~a~~~~~~~~~~~ 309 (510)
+++-..+..-+.-...-+.|- +.....|++++|.+.|++.....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 998776652221111111111 11123467888888888877653
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010458 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389 (510)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 389 (510)
.......|+. .-.+-..|+.++|++.|-++... ...+..+...+...|-...+...|++++.+.... ++.|+...+.
T Consensus 521 asc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 3322233433 33456778888888888765431 1335666677778888888888888888777665 4457778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-c
Q 010458 390 LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK-A 468 (510)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 468 (510)
|...|-+.|+-..|.+++-.-.+ -++.+..+...|..-|....-++.|+..|++..-.. ++..-|..++..|.+ .
T Consensus 598 l~dlydqegdksqafq~~ydsyr---yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq-p~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR---YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ-PNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc---ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHhc
Confidence 89999999998888887766553 567788898889888998888999999999876543 355668777766655 5
Q ss_pred CC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 469 GK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 469 g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
|+ +|..+++..-. .++-|..++.+|.+.|.
T Consensus 674 gnyqka~d~yk~~hr-kfpedldclkflvri~~ 705 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAG 705 (840)
T ss_pred ccHHHHHHHHHHHHH-hCccchHHHHHHHHHhc
Confidence 66 89988888754 57888899999999884
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-12 Score=116.11 Aligned_cols=416 Identities=10% Similarity=0.051 Sum_probs=314.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
..|.++|++.+.-. .-+...|-..+..-.++.....|..+++..... +|--...|...+-+--..|++..|.++|+.
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 67888888877655 557778888888888999999999999998875 343444555666666677999999999999
Q ss_pred cccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC---Ch
Q 010458 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP---DV 209 (510)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~ 209 (510)
-.+-.|+...|++.|..=.+-+.++.|..+|++..-. .|++.+|.-..+.=.+.|....+..+|+...+.... +.
T Consensus 167 W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 167 WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 9998999999999999999999999999999998864 489999988888888999999999999988776222 45
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHH--------HHHHHHccCCCCh
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATT--------LKEMEKRTCRKNR 279 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~ 279 (510)
..+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+-|+.....+. |+.+...++. |-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-Cc
Confidence 566777776677888899999998877652 222 33455555444455665444332 3455555444 77
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChh-------hHHHHHHHH---HhcCCHHHHHHHHHHHHhccCCCCc
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA-------EYTCVISSL---VKLGEFEKAENIYDEWESISGTGDP 349 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
.+|--.++.-...|+.+...++|+.+... ++|-.. .|..+=-+| ....|.+.+.++|+..++ -++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 78888888888889999999999999876 555321 222222222 346889999999999886 334455
Q ss_pred chHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHH
Q 010458 350 RVPNILL----AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425 (510)
Q Consensus 350 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 425 (510)
.|+..+- ..-.++.++..|.+++...+. ..|-..+|...|..-.+.++++.+..++++.++- -+-+..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~---~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF---SPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc---ChHhhHHHH
Confidence 5555433 334577889999999888774 4788889999999889999999999999999863 344667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 426 AAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
.....-...|+.+.|..+|+-+.+.... +...|.+.|+--...|. .|..+++++...
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8887778889999999999998877654 45678888888888888 889999988753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-14 Score=133.82 Aligned_cols=282 Identities=10% Similarity=0.058 Sum_probs=158.5
Q ss_pred hcChhhHHHHHHhcccCCCChhhHHHH-HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhCCCcCcHHH
Q 010458 120 IRGLSSAENFFENLPDKMRGPDTCSAL-LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN--HMLNLYISNGQLDKVPQ 196 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~ 196 (510)
.|++++|++.+....+..+++..+..+ .....+.|+++.|.+.+.++.+.. |+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777777777665554344444333 344467788888888887777643 4443222 23556677777777777
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
.++++.+..+.+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7777777666677777777777777777777777777777665432211 122222222333334444444444
Q ss_pred HHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc
Q 010458 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349 (510)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
+.+. .+.++.....+...+...|+.++|.+.+++..+. .++... .++.+....++.+++.+..+...+.. +.|+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 4332 1224555555666666666666666666555542 222211 11222233455556666655555433 2244
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555566666666666666665554 4555555555556666666666666665554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-12 Score=125.71 Aligned_cols=426 Identities=11% Similarity=0.077 Sum_probs=294.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.+|.+++.+.++.. +.+...|..|...|-+.|+.++++..+-.+-..+ |.+...|..+.....+.|.+++|.-+|.+
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999998876 7788899999999999999999998876665543 77889999999999999999999999999
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH----HHHHHHhCCCcCcHHHHHHHHHhC--C
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH----MLNLYISNGQLDKVPQMLQELKKN--T 205 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~--~ 205 (510)
+.+..|+ ...+-.-+..|-+.|+...|.+-|.++.+...+.|..-+.. .++.+...++-+.|++.++..... .
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 9998664 45555667789999999999999999998764223333333 345566777778899998887764 4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------------------HHHHHHHHhcCC
Q 010458 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY--------------------------STLTSLYIKMEL 259 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------------------------~~l~~~~~~~g~ 259 (510)
..+...+++++..+.+...++.+......+.....++|..-| --++-++.+.+.
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~ 392 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE 392 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc
Confidence 446778889999999999999999888887662222222222 012334444444
Q ss_pred hHHHHHHHHHHHHcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 260 PEKAATTLKEMEKRT--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 260 ~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
.+....+.....+.. +.-+...|.-+..+|...|++.+|+.++..+......-+...|..+..+|...|.++.|.+.|
T Consensus 393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 444445555555554 333456778888888888888888888888877654445567888888888888888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 338 DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK--------GIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (510)
..++... +.+...--.|...+-+.|+.++|.+.+..+... +..|+..........+.+.|+.++-+.....
T Consensus 473 ~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 473 EKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8888643 224444556677778888888888888875422 1233333333344455556665554333332
Q ss_pred Hhhc-------------------------------------------------------------cCCCCCC--HHHHHH
Q 010458 410 AIGS-------------------------------------------------------------VRKWVPD--HRLITA 426 (510)
Q Consensus 410 ~~~~-------------------------------------------------------------~~~~~p~--~~~~~~ 426 (510)
++.. ..++.-+ ...+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 2221 0000000 123456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHV--STE----IYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~----~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
++.++.+.|++++|..+...+...... +.. .-...+.+.+..++ .|...+..|...
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 677888999999999999888776543 332 33445555556666 778888877643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-13 Score=121.61 Aligned_cols=393 Identities=13% Similarity=0.042 Sum_probs=256.6
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhC
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQN 153 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 153 (510)
-....-|.++|++++|+++|.+..+.. |..+..|.....+|...|++++..+.-.+..+..|+ ...+..-..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 344566788999999999999999864 333788889999999999999999888888887765 56666677777778
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhCCCcCcHHHHHHH-HHhC---CCCChhHHHHHHHH----------
Q 010458 154 KKSAEAEALMEKMSEC-GFLKCPLPYNHMLNLYISNGQLDKVPQMLQE-LKKN---TSPDVVTYNLWLAA---------- 218 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~---~~~~~~~~~~l~~~---------- 218 (510)
|++++|+.=..-..-. |+. +..+--.+=+.+-+. |.+..++ +.+. ..|+.....+....
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 8887775433222111 111 111110000111000 0111111 1111 11222111111111
Q ss_pred -------------HHh--c---CCHHHHHHHHHHHHh---CCCCCC---------HHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 219 -------------CAS--Q---NDKETAEKAFLELKK---TKIDPD---------WISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 219 -------------~~~--~---~~~~~a~~~~~~m~~---~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
+.. . ..+..+.+.+.+-.. .....+ ..+...-...+.-.|+.-.|..-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 100 0 123333333333111 000111 1122222233455788899999999
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
..+...+. +...|--+..+|....+.++.++.|.+..+.+.. +..+|..-.+...-.++++.|..=|++.++..+. +
T Consensus 351 ~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~ 427 (606)
T KOG0547|consen 351 AAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-N 427 (606)
T ss_pred HHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-h
Confidence 99887555 3333777888889999999999999998876433 5677888888888889999999999998865422 5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----CCCCHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-----WVPDHRL 423 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~p~~~~ 423 (510)
+..|-.+..+.-+.+++++++..|++..++ ++..+..|+.....+...+++++|.+.|+.+++.-+. +.+.+.+
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 666666777777888999999999999887 3446778999999999999999999999999864110 1122333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
...++..-. .+++..|.+++.+..+.+|.....|.+|...-.+.|+ +|+++|++-.
T Consensus 507 ~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334443333 3899999999999999999888899999999999999 8999998754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-14 Score=134.49 Aligned_cols=287 Identities=11% Similarity=0.059 Sum_probs=147.8
Q ss_pred HHhcChhhHHHHHHhcccCCCChhh-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhCCCcCcH
Q 010458 118 SKIRGLSSAENFFENLPDKMRGPDT-CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL--PYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a 194 (510)
...|+++.|.+.+.+..+..|++.. +-....++.+.|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567777777777776666555433 3444566667777777777777766543 4433 233346666677777777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---HHHhcCChHHHHHHHHHH
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS-TLTS---LYIKMELPEKAATTLKEM 270 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~~ 270 (510)
...++.+.+..+.+..+...+...+...|+++++.+.+..+.+.++. +...+. .-.. .....+..++..+.+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777766556677777777777777777777777777766533 222221 1111 112222222223333333
Q ss_pred HHccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhh--H-HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 271 EKRTCR---KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE--Y-TCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 271 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
.+..+. .+...+..+...+...|+.++|.+.+++..+.. |+... + ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 333211 245555666666666666666666666665532 22211 0 111111122344444444444444322
Q ss_pred CCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 345 GTGDP--RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 345 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 3333444444555555555555553222122344444444555555555555555555444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=143.19 Aligned_cols=259 Identities=16% Similarity=0.188 Sum_probs=60.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDK 225 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (510)
...+.+.|++++|+++++...... .+.|...|..+...+...++++.|.+.++++....+.+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344444444444444443322221 111222333333333444444444444444444332233344444443 344445
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|++++|+..+++
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55544444433221 233334444444445555555555555444321 122344444444455555555555555555
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 384 (510)
..+..+. +......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..+|++..+.+. .|.
T Consensus 172 al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~ 248 (280)
T PF13429_consen 172 ALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDP 248 (280)
T ss_dssp HHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-H
T ss_pred HHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-ccc
Confidence 5443111 23334444444444555555444444444322 23344444555555555555555555555544321 144
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.....+..++...|+.++|.++.+++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444445555555555555555554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-13 Score=128.80 Aligned_cols=285 Identities=15% Similarity=0.116 Sum_probs=215.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHH-HHHHHHHhCCCcCcHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYN-HMLNLYISNGQLDKVPQMLQELKKNTSPDV-VTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 230 (510)
.|++++|.+.+....+.. +++..+. ....+..+.|+++.|.+.+.++.+..+.+. .........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888766643 2233333 334455789999999999999977533332 222234678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-------VAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 446778888999999999999999999999988665322 123333444444555666777777
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
.+... .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++....+...+..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 66443 3346677888899999999999999999998863 344422 2344445668999999999999887433 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
...+..+...+.+.+++++|.+.|+++.+ ..|+...+..+..++.+.|+.++|.+++++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788889999999999999999999995 4799999999999999999999999999987553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=135.04 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=202.3
Q ss_pred ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC----ChhhHHHHHHHHHhCCCHHHHHH
Q 010458 86 RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
+.++|+..|..+.++ ++...++...++.+|...+++++|+++|+.+.+..| +.++|.+.+..+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567788888886554 355667777888888888888888888888877754 46777777765532 22222
Q ss_pred HH-HHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 162 LM-EKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 162 ~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
.+ +++.+.. +-.+.+|.++..+|.-+++.+.|++.|++..+..+....+|+.+..=+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 22 3333332 23667888888888888888888888888877766677888888888888888888888887765432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (510)
+.+-..|.-+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.|+|+++++++...... |...-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 112333445677788888888888888888887665 6667777777888888888888888887765333 33333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
+..+...+++++|+..++++.+.- +.+...+..+...|.+.|+.+.|..-|.-+.+..+++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 556667788888888888877542 33556677778888888888888888777777655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-11 Score=115.10 Aligned_cols=412 Identities=12% Similarity=-0.005 Sum_probs=297.4
Q ss_pred HHHhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC
Q 010458 43 RRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG 122 (510)
Q Consensus 43 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 122 (510)
+......-...+|.-++.+.++. ++-+...|. +|.+..-++.|..+++..++. +|.++..|..-...--..|+
T Consensus 383 WKaAVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCC
Confidence 33333333334566666666553 344545443 445556677888888888775 57778888777777777888
Q ss_pred hhhHHHHHHhcccC----C--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhCCCcCcH
Q 010458 123 LSSAENFFENLPDK----M--RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 123 ~~~A~~~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a 194 (510)
.+...+++.+.... | .+...|..=...|-..|..-.+..+.......|+.-. ..||+.-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 88777777654322 2 2456677777777788888888888888777775432 34778888888888888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 274 (510)
..+|....+..+-+...|......--..|..+....+|++.... ++-....|-....-+-..|++..|..++.+..+..
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 88888888877777888888877777788888888888888765 34455667677777778889999999888888876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHH
Q 010458 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354 (510)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (510)
+. +...|-.-+.....+.++++|..+|.+... ..|+...|..-+...-..++.++|.+++++.++. ++.-...|..
T Consensus 615 pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lm 690 (913)
T KOG0495|consen 615 PN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLM 690 (913)
T ss_pred CC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHH
Confidence 55 777888888888888889999998888766 5667777777777777788888898888887753 2333556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 434 (510)
+...+-+.++++.|...|..-.+. ++-....|-.+...--+.|++-+|..++++..- .-+.+...|...|+.-.+.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl---kNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL---KNPKNALLWLESIRMELRA 766 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh---cCCCcchhHHHHHHHHHHc
Confidence 888888888888888877765554 222445666666666777888889889988876 3455677888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
|+.+.|..++.++.+..|.+-..|..-|....+.++
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 999888888888877665555555555554444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=142.58 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=64.7
Q ss_pred HHHHHHhcChhhHHHHHHhc-ccC-CC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 114 LDLISKIRGLSSAENFFENL-PDK-MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
...+...|++++|.++++.. ... +| ++..|..+.......++++.|.+.++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44444444445554444322 121 12 2333344444444445555555555554443322 23334444443 34445
Q ss_pred cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010458 191 LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
+++|.+++...-+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus 93 ~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555544443322 1233334444445555555555555555543221 223444455555555555555555555555
Q ss_pred HHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc
Q 010458 270 MEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349 (510)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
..+..+. |......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|..+|++..+.. +.|+
T Consensus 172 al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 5554322 34445555555555555555555555544432 2233344445555555555555555555554432 2244
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRL 375 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 375 (510)
.....+..++...|+.++|..+.+++
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44555555555555555555555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-12 Score=113.22 Aligned_cols=293 Identities=14% Similarity=0.122 Sum_probs=174.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCC
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTS---PDVVTYNLWLAACASQND 224 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 224 (510)
.++......+++..-.+...+.|++.+...-+....+.....++++|+.+|+++.+..+ .|..+|+.++-+-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444455666666666666666654444444444445566677777777777776622 255666665543222111
Q ss_pred HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 225 KE-TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 225 ~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
.. .|..+++ + . +--+.|.-.+.+.|.-.++.++|...|+...+.++. ....|+.+..-|....+...|++-++
T Consensus 315 Ls~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 1 1 112245555666677777777777777777776554 55667777777777777777777777
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 304 KMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
.+.+-+ +.|-..|..+.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 776642 2255667777777777777777777777776543 3466777777777777777777777777777654 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGS--VRK-WVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
...+..+...|-+.++..+|..+|.+.++. ..| ..| .......|..-+.+.+++++|.........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 566777777777777777777777766652 011 222 122333345555666666666655444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-14 Score=134.47 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=233.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
.+|...|+. ....+.-+.+....+.++|...+++++|.++|+.+.+... ...+.+.|...+..+-+.-.+. -+-+
T Consensus 336 ~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~Laq 411 (638)
T KOG1126|consen 336 REALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YLAQ 411 (638)
T ss_pred HHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HHHH
Confidence 899999999 5555566667778999999999999999999999998642 1235567777766653322221 1223
Q ss_pred hcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCCh
Q 010458 132 NLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 209 (510)
Q Consensus 132 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 209 (510)
.+.+..| .|.+|.++..+|.-+++.+.|++.|++..+.+ | ...+|+.+..-+.....+|.|...|+......+.+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 3344444 48999999999999999999999999999876 4 778999999999999999999999999987766677
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
.+|.-+.-.|.+.++++.|+-.|++..+.+ +.+.+....+...+.+.|+.++|+.+|++.....+. |+..--..+..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il 567 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASIL 567 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHH
Confidence 778888999999999999999999998875 345566667788899999999999999999988766 777777788888
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|..-|..+.+..+++.
T Consensus 568 ~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 999999999999999988 45554 6788889999999999999999999887654443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-13 Score=127.44 Aligned_cols=292 Identities=14% Similarity=0.077 Sum_probs=209.6
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcch-HHHHHHHHHhCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLP-YNHMLNLYISNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 228 (510)
...|+++.|.+.+.+..+.. |++.. +-....++.+.|+.+.|.+.+.+..+..+.+ ....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999998887754 55443 3444677788899999999999987653322 23444457888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS-SLLSLY---TNMGYKDEVLRIWKK 304 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 304 (510)
...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998875 446677889999999999999999999999988655 333332 111221 223333334445555
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 305 MMSLFAK---MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV-PNILLAAYINRNQLEMAESFYNRLVTKGI 380 (510)
Q Consensus 305 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 380 (510)
+...... .+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 5543221 2667788888899999999999999999987543322111 11222223345778888888888887632
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 381 KPCY--TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 381 ~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
. |. ....++...+.+.|++++|.+.|+.+... ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~--~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC--KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 33 55668889999999999999999953332 4579998899999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-12 Score=111.21 Aligned_cols=221 Identities=13% Similarity=0.141 Sum_probs=96.8
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C--HHHHHHHHHHHHhcCChHHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-D--WISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
+.++|.+.|-+|.+..+.+..+--+|.+.|.+.|..|.|+++.+.+.++.--+ + ....-.|..-|...|-+|.|+.+
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34444444444444333333333444444444444444444444443321000 0 01112233444444555555555
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA----EYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+... -|.-+...+....+.+.|..++.+..+
T Consensus 130 f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 130 FNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 5554443211 23334444555555555555555555444433322221 133333333344455555555555554
Q ss_pred ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 343 ISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.+.+ .+..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|.+.|+.++...++.++.+
T Consensus 209 a~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 209 ADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3322 33333344445555555555555555555544333334445555555555555555555555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-12 Score=111.02 Aligned_cols=288 Identities=14% Similarity=0.079 Sum_probs=170.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCC---ChhHHHHHHHHHHhcCCHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP---DVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a 228 (510)
..+.++|.++|-+|.+... -+..+.-+|.+.|-+.|..|+|+.+.+.+.+. .-+ -..+...|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3455666666666665321 13334445556666666666666666665554 111 122334455566667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
+.+|..+.+.| .--......|+..|....+|++|+++-+++.+.+..+.. ..|-.+...+....+.+.|...+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777766544 223445566777777777777777777777766544332 2344455555556677777777777
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 384 (510)
..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.++.--..+...|..+|...|+.++....+.++.+... ..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 7664322 22333445566677777777777777777765554455667777777777777777777777776533 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE---QGDIDGAEHLLVTLRN 449 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 449 (510)
..-..+...-....-.+.|..++.+-+.. +|+...+..++..-.. .|..++...+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333444334444556666666655543 6777777777765433 3445566666666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-12 Score=110.27 Aligned_cols=284 Identities=12% Similarity=0.057 Sum_probs=146.5
Q ss_pred hcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHH
Q 010458 120 IRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 198 (510)
.|++.+|++...+..+.++. ...|..-+.+.-+.|+.+.+-+++.+..+....++...+-+..+.....|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46666666666665555443 23444455556666666666666666666432344444555556666666666666666
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWI-------SYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.++.+..+.+........++|.+.|++.....++..+.+.|.-.+.. +|..+++-....+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 66666655566666666666666666666666666666665433322 23334433333333333333444333
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
.. .+.++..-..++.-+...|+.++|.++.++..+.+..|. ...+ -.+.+.++...-++..++..+.. +.++..
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L 330 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PEDPLL 330 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence 32 222334444445555555555555555555555444333 1111 12334444444444444444322 123344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 455555555555555555555544443 4455555555555555555555555555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-10 Score=103.87 Aligned_cols=403 Identities=10% Similarity=0.043 Sum_probs=305.5
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALL 147 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 147 (510)
.+...|-....--..++++..|..+|+.....+ .-+...|...+.+-.+...+..|..+|+.+...-|. ...|...+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 344455555555556778888999999998764 446667778888889999999999999998887665 35666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
..=-..|++..|.++|++-.+. .|+...|++.|+.=.+.+.++.|..+|++..-. .|++.+|-.....-.+.|+...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHH
Confidence 6666789999999999998876 499999999999999999999999999998654 5899999999999999999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC-hhhHHHHHHHHHhcCCHHHHHHH---
Q 010458 228 AEKAFLELKKT-KI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN-RVAYSSLLSLYTNMGYKDEVLRI--- 301 (510)
Q Consensus 228 a~~~~~~m~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~--- 301 (510)
+..+|....+. |- ..+...+.+....-.++..++.|.-+|+-..+.-+... ...|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999987653 11 11233455555555667889999999998888733311 34555555554556665443332
Q ss_pred -----HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc--hHHHH--------HHHHHhcCCHH
Q 010458 302 -----WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNIL--------LAAYINRNQLE 366 (510)
Q Consensus 302 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l--------~~~~~~~g~~~ 366 (510)
++.+.+. .+.|-.+|--.+..-...|+.+...++|+..+. +++|-.. .|.-. +..=....+++
T Consensus 306 KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344443 233566777788888888999999999999985 4444221 12111 11223567899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 367 MAESFYNRLVTKGIKPCYTTWEL----LTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 367 ~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+.++|+..++. ++-...||.- ....-.++.++..|.+++..++ |.-|...+|...|..-.+.++++....
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999884 2223445443 3444557889999999999999 778999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC
Q 010458 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDN 483 (510)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~ 483 (510)
++++..+-+|.+-.+|......-...|+ .|..+|+-..+.+
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999999988899988888888898 8889999887643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-11 Score=108.83 Aligned_cols=284 Identities=15% Similarity=0.100 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
.|++.+|++...+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.+..+. ..++....-+..+.....||++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888777766332 233444556666778888888888877766 556667777777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR-------VAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
++++.+.+ +.+.........+|.+.|++.....++.++.+.|.-.|. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 345566777778888888888888888888887765443 2456666666555555555556665
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY 384 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 384 (510)
.... .+.++..-.+++.-+..+|+.++|.++..+..+.+..|+ . .....+.+-++.+.-.+..++-.+.. +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 444555666666677777777777777777776665554 1 11223345566666666666555432 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
..+..+...|.+.+.+.+|...|+.+. ...|+..+|..+.+++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl----~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAAL----KLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH----hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 666777777777777777777777776 447777777777777777777777777777665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-11 Score=109.23 Aligned_cols=432 Identities=11% Similarity=0.047 Sum_probs=303.3
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
..|.-+-++.... .-++..--.+...+.-.|+++.|..+...-.-. ..+..........+.+..++++|..++..
T Consensus 33 ~~a~f~adkV~~l--~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 33 KTALFWADKVAGL--TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred hHHHHHHHHHHhc--cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444444433 345555556677777788888888777654332 34677777888888999999999999883
Q ss_pred cccC----C-----------CCh-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 133 LPDK----M-----------RGP-----------DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 133 ~~~~----~-----------~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
.... . ++. ..+-.-...|....++++|...|.+....++. ....+..++....
T Consensus 108 ~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 108 GHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHM 186 (611)
T ss_pred cchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHh
Confidence 2111 0 010 00111112455566778888888877764322 2223333333322
Q ss_pred hCC------------------CcCcHHHHHHHH----HhC-------------CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 187 SNG------------------QLDKVPQMLQEL----KKN-------------TSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 187 ~~g------------------~~~~a~~~~~~~----~~~-------------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
-.- +.+....+|+-. ... ...+.........-|...+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 111 001111122211 000 111344445555667788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (510)
++...+.. ++....+..-|.++...|+..+-..+=.++.+..+. ...+|-++.--|...|+..+|..+|.+.... .
T Consensus 267 t~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~l--D 342 (611)
T KOG1173|consen 267 TEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTL--D 342 (611)
T ss_pred hHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--C
Confidence 99987764 556666777778999999999888888889887544 7889999999999999999999999998664 3
Q ss_pred CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 312 MN-DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 312 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
|. ...|-.+...++-.|.-++|...+....+.-.. ....+--+.--|.+.++.+.|.++|.+.....+ .|+...+-+
T Consensus 343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~El 420 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHEL 420 (611)
T ss_pred ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-Ccchhhhhh
Confidence 33 357888899999999999999999887763211 222233455667889999999999999987643 366778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVP----DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
.......+.+.+|..+|+..+...+.+.+ ...+++.|..+|.+.+++++|+..+++.....+.+..++.++...|.
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 77778889999999999998843222222 45678999999999999999999999999999999999999999999
Q ss_pred HcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 467 KAGK--MPLIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 467 ~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
..|+ .|...|++.. .+.||..+...+++-+
T Consensus 501 llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999 8999999875 5789987777777644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-10 Score=103.32 Aligned_cols=375 Identities=17% Similarity=0.113 Sum_probs=251.6
Q ss_pred cChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH---HH
Q 010458 105 LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN---HM 181 (510)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~---~l 181 (510)
.|+..+...+..+.+.|..+.|++.|....... |..|.+-+....-..+.+.+ ..+.. |.+.| .+|. .+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~-~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELITDIEIL----SILVV-GLPSD-MHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhchHHHH----HHHHh-cCccc-chHHHHHHH
Confidence 344444555566677888888888888776553 33444433332222333322 22222 11112 2221 23
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQNDKETAEKAFLELKKTKI--DPDWISYSTLTSLYIKME 258 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g 258 (510)
..++....+.+++..-.+.....+-|+ ...-+....+.....|+++|+.+|+++.+..+ --|..+|+.++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 445555667777877777777775553 33444444555678899999999999987641 125667776653 3332
Q ss_pred ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
+-. +..+-+-.-.--+--+.|...+.+-|...++.++|..+|+...+.+.. ....|+.+..-|....+...|.+-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 211 112211111101123457778888999999999999999999885432 44678888899999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
..++.+ +.|-..|-.|.++|.-.+...-|+-+|++..+..+ -|...|..|..+|.+.++.++|++.|+++... + .
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~-d 463 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL--G-D 463 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--c-c
Confidence 999766 44888999999999999999999999999998743 37889999999999999999999999999974 3 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCH---HHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHH
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHVST---EIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAE 489 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~ 489 (510)
.+...+..+...+.+.++.++|...|++..+. |..++ ..---|..-+.+.++ +|....... -.| .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~-~~~-~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV-LKG-ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH-hcC-CchHH
Confidence 46788999999999999999999999887652 23332 223335666677777 444333333 334 66667
Q ss_pred HHHHHHhhcC
Q 010458 490 TQKVLKITSE 499 (510)
Q Consensus 490 t~~~l~~~~~ 499 (510)
--+.|++-+.
T Consensus 542 eak~LlReir 551 (559)
T KOG1155|consen 542 EAKALLREIR 551 (559)
T ss_pred HHHHHHHHHH
Confidence 7777777553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-12 Score=112.12 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=211.3
Q ss_pred HHhcCCHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 219 CASQNDKETAEKAFLELKK---------TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 219 ~~~~~~~~~a~~~~~~m~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
|...+|+..|........+ .+...|..--+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY 266 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY 266 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence 4456667666644433221 122233334478999999999999999999998886 55677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEY-TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
.+..++..|+.++.+-.+. .|..+|| .-....+...++.++|.++|+...+.. +.++.....+...|.-.++.+.|
T Consensus 267 ~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHH
Confidence 9999999999999998774 4555554 556678888999999999999999765 44677777788888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
+++|+++++.|+. +...|+.+.-+|...+++|-++..|.+++.. ...|+ ..+|..+.......|++..|.+.|+-
T Consensus 344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst--at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST--ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--ccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 9999999999986 8899999999999999999999999999976 34444 56888999899999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhC
Q 010458 447 LRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
....++.+.+.+|.|.-.-.+.|+ .|..++......
T Consensus 421 aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 421 ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999899999999999999999 888888887653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-11 Score=121.45 Aligned_cols=248 Identities=10% Similarity=0.020 Sum_probs=157.2
Q ss_pred ChhhHHHHHHhcccCCCC-hhhHHHHHHHHH---------hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc
Q 010458 122 GLSSAENFFENLPDKMRG-PDTCSALLHSYV---------QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191 (510)
Q Consensus 122 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 191 (510)
.+++|..+|++..+..|+ ...|..+..++. ..+++++|...+++..+.+.. +...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCH
Confidence 456777777777777664 445555544433 224477888888887776522 556677777777778888
Q ss_pred CcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
++|...|++..+..+.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|...++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 88888888887776667777777888888888888888888887766432 22233334445666788888888888776
Q ss_pred HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCCCc
Q 010458 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEWESIS-GTGDP 349 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 349 (510)
+...+-+...+..+..++...|++++|...++++... .|+. ...+.+...++..| +.|...++.+.+.. ..+..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 6532224455667777777888888888888776543 2332 33444445556656 36666666655421 11222
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
..+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222 33344556666666655 766664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-11 Score=108.50 Aligned_cols=284 Identities=12% Similarity=0.044 Sum_probs=209.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
+.......+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-++.-.|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 4444555566777888888888888888754 456666666777888888888888888888888777888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
.-.|+..+|.++|.+....+. .=...|-.+.+.|.-.|..++|...+....+.-+. ..-.+--+.--|.+.++.+.|.
T Consensus 323 l~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHH
Confidence 888999999999888654321 12456788888888888889888888877765211 2233444555677788888899
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCC----CcchHHHHHHHHHhcCCHHHHHHHHH
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS--GTG----DPRVPNILLAAYINRNQLEMAESFYN 373 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (510)
++|.+.... .+-|+..++-+.......+.+.+|..+|+.....- ..+ -..+++.|.++|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 988888764 22355667777666677788888888888776311 111 23357788888888899999999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 374 RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 374 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+.+....+ +..++.++.-.|...|+++.|++.|.+++ .+.|+..+...++..+.
T Consensus 480 ~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL----~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 480 KALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL----ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH----hcCCccHHHHHHHHHHH
Confidence 88876543 77888888888888899999999998888 56788777666665443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-09 Score=100.70 Aligned_cols=388 Identities=15% Similarity=0.133 Sum_probs=183.7
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHH
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
..+++...+.+.+.+.+. .|.-.++....+-.+...|+.++|....+.....++ +...|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555553 244444444444444455555555555555544433 34455555555555555555555
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK-I 240 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~ 240 (510)
.|......+. -|...|.-+.-.-++.|+++.....-..+.+..+.....|..++.++.-.|+...|..++++..+.. -
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555554431 1333444444444455555555555555444434444555555555555555555555555554332 1
Q ss_pred CCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 010458 241 DPDWISYSTLT------SLYIKMELPEKAATTLKEMEKRTCRKNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313 (510)
Q Consensus 241 ~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (510)
.|+...+.-.. ....+.|.+++|.+.+..-... +. |.. .-..-...+.+.+++++|..++..+... .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 23333332211 1223344445554444443332 11 111 1122333444555555555555555542 334
Q ss_pred hhhHHHHHH-HHHhcCCH-----------------------------------HHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 314 DAEYTCVIS-SLVKLGEF-----------------------------------EKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 314 ~~~~~~l~~-~~~~~~~~-----------------------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
...|..... ++.+..+. +...+++....+.|++ .++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHH
Confidence 433332222 22111111 2222233333333322 12333333
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCC----------CCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCH
Q 010458 358 AYINRNQLEMAESFYNRLV----TKGI----------KPCYTT--WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~----~~~~----------~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~ 421 (510)
.|-.-...+-..++.-.+. ..|. +|.... +-.++..+-+.|+++.|..+++.++. ..|+.
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId----HTPTl 404 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID----HTPTL 404 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCchH
Confidence 3322111111111111111 1110 233333 33456667777888888888887774 35553
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCC
Q 010458 422 -RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNV 484 (510)
Q Consensus 422 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~ 484 (510)
..|..=.+.+...|++++|..++++..+.+.+|..+-..-..-..++.+ +|..+.....+.|.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 3455556677777888888888888777766654444345555555555 67777776666654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-11 Score=117.09 Aligned_cols=249 Identities=12% Similarity=0.007 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIK---------MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (510)
++++|...|++..+.. +.+...|..+..++.. .+++++|...+++..+.++. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3456666676666543 1233445444444332 23366777777777666444 55666666666667777
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (510)
+++|...++++.+.++. +...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777776664321 3345566666667777777777777776655432 222223333345556677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 375 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
+.+...+-+...+..+..++...|++++|...+.++... .|+.. ..+.+...|...| +.|...++.+.+..-.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ----EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 665432213334555666666777777777777665532 33332 3344444455555 3566655555443222
Q ss_pred CHHHHHHHHHHHHHcCC-ChHHHHHHHHhC
Q 010458 454 STEIYNSLLRTYAKAGK-MPLIIVERMQKD 482 (510)
Q Consensus 454 ~~~~~~~l~~~~~~~g~-~a~~~~~~m~~~ 482 (510)
.......+-..|.-.|+ +...+++++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHHHHhhcc
Confidence 11111113333444555 444455665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-11 Score=106.99 Aligned_cols=197 Identities=11% Similarity=-0.071 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHS 149 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 149 (510)
...+..+...+...|++++|.+.++.+.+.. |.+...+..+...+...|++++|.+.+++..+..| +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4445556666666666666666666665543 44455556666666666666666666666655543 24455555566
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
+...|++++|.+.++...+....| ....+..+...+...|++++|...+.+..+..+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666655432111 1223344444444555555555555554444333344444444444445555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5554444333 1223333334444444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-10 Score=99.36 Aligned_cols=381 Identities=13% Similarity=0.038 Sum_probs=251.6
Q ss_pred CcHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVH-KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
++|...+...+. ..|+ +.-|.-...+|...|+|++.++......+.+ |.-...+..-..++-..|++++|+.=+.
T Consensus 132 ~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 132 DEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 899999998887 5667 7778888899999999999999998888764 4444566666777888888888754221
Q ss_pred hcccC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHh-CC--CCCCcchHHHHHHHHH---------------------
Q 010458 132 NLPDK-MRGPDTCSALLHSYVQNKKSAEAEALMEKMSE-CG--FLKCPLPYNHMLNLYI--------------------- 186 (510)
Q Consensus 132 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--~~p~~~~~~~l~~~~~--------------------- 186 (510)
-..-. +-+......++.-..+ ..|..-.++-.+ .+ +-|+.....+....+.
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 11100 0000011111111100 111111111111 11 1222222222221111
Q ss_pred --h--CC---CcCcHHHHHHHHHhC--CCC--C---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010458 187 --S--NG---QLDKVPQMLQELKKN--TSP--D---------VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS 246 (510)
Q Consensus 187 --~--~g---~~~~a~~~~~~~~~~--~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 246 (510)
. .+ .+.+|.+.+.+-... ..+ + ..+...-...+.-.|+.-.+..-|+..+.....++ ..
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SL 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hH
Confidence 0 01 122222222221111 111 1 12222222334557889999999999888764433 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISSLV 325 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 325 (510)
|--+...|....+.++.++.|.+..+.++. ++.+|..-.+.+.-.+++++|..=|++.+.. .| +...|-.+..+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHH
Confidence 777888899999999999999999998776 8889999999999999999999999999874 33 4456777777778
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--HHHHHHHHhcC
Q 010458 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-----PCYTTW--ELLTWGYLKKG 398 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~--~~l~~~~~~~~ 398 (510)
+.+.++++...|++..+. ++..+..|+.....+...++++.|.+.|+...+.... .+..++ ..++..- =.+
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~ 517 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhh
Confidence 999999999999999864 4557889999999999999999999999998875322 112222 1111111 248
Q ss_pred CHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 399 QMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
++..|..++.++.+. .|. ...|..|...-.+.|+.++|+++|++.....
T Consensus 518 d~~~a~~Ll~KA~e~----Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 518 DINQAENLLRKAIEL----DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hHHHHHHHHHHHHcc----CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999953 444 4578999999999999999999999876543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.3e-09 Score=96.15 Aligned_cols=432 Identities=14% Similarity=0.147 Sum_probs=280.3
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-----cccChhhHHHHHHHHHHhcCh---h
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-----IKLVSGDYAVHLDLISKIRGL---S 124 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~---~ 124 (510)
..+..++++-++ .++..-+-.|..+++.+++++|.+.+......+. .+.+...|..+.+..++.-+. -
T Consensus 155 ets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl 230 (835)
T KOG2047|consen 155 ETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL 230 (835)
T ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc
Confidence 567777777654 3444567778889999999999988888765421 123444555565555544322 2
Q ss_pred hHHHHHHhcccCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC--------------
Q 010458 125 SAENFFENLPDKMRG--PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN-------------- 188 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------- 188 (510)
....+++.+....+| ...|++|.+.|.+.|.+++|..+|++..+.- .+..-|+.+.++|+.-
T Consensus 231 nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~ 308 (835)
T KOG2047|consen 231 NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADE 308 (835)
T ss_pred CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334456666666565 5689999999999999999999999877642 3444455555555431
Q ss_pred --CC------cCcHHHHHHHHHhC------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----
Q 010458 189 --GQ------LDKVPQMLQELKKN------------TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD----- 243 (510)
Q Consensus 189 --g~------~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----- 243 (510)
|+ ++-...-|+.+... .+.++..|..-... ..|+..+-...|.+..+. +.|.
T Consensus 309 ~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs 385 (835)
T KOG2047|consen 309 ESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGS 385 (835)
T ss_pred cccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCC
Confidence 11 11222333333221 23355555544443 456777777778776543 2221
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-------
Q 010458 244 -WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM------- 312 (510)
Q Consensus 244 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------- 312 (510)
...|..+.+.|-..|+++.|..+|++..+...+-- ..+|......=.+..+++.|+++.+......-.|
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 24578889999999999999999999988643311 2355556666667888999999888875431111
Q ss_pred ----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010458 313 ----------NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP 382 (510)
Q Consensus 313 ----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 382 (510)
+...|...++..-..|-++....+|+.+.+..+. ++.+.-.....+-.+.-++++.++|++-+..-.-|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 1123566666666778999999999999876543 33333333333445666888888888766654455
Q ss_pred CHH-HHHHHHHHHHh---cCCHHHHHHHHHHHhhccCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--C
Q 010458 383 CYT-TWELLTWGYLK---KGQMEKVLECFKKAIGSVRKWVPDHRL--ITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--S 454 (510)
Q Consensus 383 ~~~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~ 454 (510)
+.. .|+..+.-+.+ ...++.|..+|+++++ +.+|...- |......-.+.|-...|+.+++++...-.. -
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~ 621 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR 621 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence 554 67766665554 3478999999999997 66655432 222233334568899999999998765443 2
Q ss_pred HHHHHHHHHHHHHc-CC-ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 455 TEIYNSLLRTYAKA-GK-MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 455 ~~~~~~l~~~~~~~-g~-~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
..+||..|.--... |- ....+|++..+. -||...-...++..+
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHH
Confidence 46788887665543 54 778888888775 678887777777664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-09 Score=99.74 Aligned_cols=424 Identities=12% Similarity=0.052 Sum_probs=235.2
Q ss_pred cHHHHHhhhcccC--CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHH
Q 010458 40 TLGRRLLSLVYAK--RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117 (510)
Q Consensus 40 ~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (510)
.+...+-+..... ++|.....++...+ +-+...+..=+-++.+.+++++|+.+.+.-... .....-+.--.-+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHH
Confidence 3444444444444 67777777766654 445556666666677778888887554432210 11111111223333
Q ss_pred HHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH-hCCCcCcHHH
Q 010458 118 SKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI-SNGQLDKVPQ 196 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 196 (510)
.+.++.|+|...++...+. +..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+-+ ..+....+.
T Consensus 90 Yrlnk~Dealk~~~~~~~~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred HHcccHHHHHHHHhccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhHH-
Confidence 4777888888877743332 3445555566677788888888888888775422 2222222211 111111111
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------C-----CCCHH-HHHHHHHHHHhcCChHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK--------I-----DPDWI-SYSTLTSLYIKMELPEK 262 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~-----~~~~~-~~~~l~~~~~~~g~~~~ 262 (510)
+.+........+-..+......+...|++.+|+++++...+.+ . ..... .-..|.-.+...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1221111111122222223445667899999999998872211 0 00111 12235556778899999
Q ss_pred HHHHHHHHHHccCCCChhh----HHHHHHHHHhcCCHH----------------HHHHHHH-------------------
Q 010458 263 AATTLKEMEKRTCRKNRVA----YSSLLSLYTNMGYKD----------------EVLRIWK------------------- 303 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~----------------~a~~~~~------------------- 303 (510)
|..++...++..+. |... -|.|+..-....-++ .....+.
T Consensus 243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887554 4322 122221111000000 0000000
Q ss_pred ------HHHHhcCCCC--hhhHHHHHHHHHh--cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 010458 304 ------KMMSLFAKMN--DAEYTCVISSLVK--LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373 (510)
Q Consensus 304 ------~~~~~~~~~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (510)
+... ..++. ...+..++..+.+ ......+.+++....+..+.....+.-..+......|+++.|.+++.
T Consensus 322 k~~q~r~~~a-~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSA-SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHH-hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0000 01111 2334444444332 22466777777776655433334455667778889999999999999
Q ss_pred --------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH----HHHHHcCCHHHHH
Q 010458 374 --------RLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY----NKLEEQGDIDGAE 441 (510)
Q Consensus 374 --------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~ 441 (510)
.+.+.+..|-.+ ..+...+.+.++-+.|..++.+++.....-.+.......++ ..-.+.|+-++|.
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 666655555444 45666677777766677777766653222233333333333 3345679999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHcCC-ChHHHHHH
Q 010458 442 HLLVTLRNAGHVSTEIYNSLLRTYAKAGK-MPLIIVER 478 (510)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~a~~~~~~ 478 (510)
.+++++.+.++.+..+...++.+|++..- .|..+-..
T Consensus 479 s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 479 SLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhc
Confidence 99999999999999999999999999887 66555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=106.16 Aligned_cols=234 Identities=16% Similarity=0.185 Sum_probs=199.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
-+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..++..|+.++.+-.+.- +-|+....-+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 367889999999999999999997765 5667789899999999999999999999998862 3255555668888889
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.++.++|.++|+...+. .+.+.....++...|.-.++++.|...|+.+.+.|+. ++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999886 3346677778888888999999999999999999966 888999999999999999999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 372 YNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 372 ~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
|++....--.|+ ...|-.+.......|++.-|.+.|+-++.. -.-+...++.|...-.+.|++++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999887543344 357888888888899999999999999973 344577899999889999999999999999998
Q ss_pred CCCC
Q 010458 450 AGHV 453 (510)
Q Consensus 450 ~~~~ 453 (510)
..|.
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 8775
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-10 Score=103.07 Aligned_cols=199 Identities=14% Similarity=0.126 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (510)
..+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.+++...... .+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 44455555555566666666666655554322 344555555555566666666666665555321 1333444555555
Q ss_pred HhcCCHHHHHHHHHHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 325 VKLGEFEKAENIYDEWESISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
...|++++|.+.++...+.... .....+..+..++...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666665542211 12234445556666666666666666666654322 344566666666667777777
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
...++++.+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777666652 233445555556666666777777666666544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-09 Score=104.20 Aligned_cols=293 Identities=14% Similarity=0.091 Sum_probs=167.1
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhH-HHHHHHHHhC--
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC-SALLHSYVQN-- 153 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~-- 153 (510)
....+...|++++|++.++.-... +......+......+.+.|+.++|...+..+.+.+|+...| ..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 345566778888888888775543 34455666677778888888888888888888887765444 4444444221
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC-cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010458 154 ---KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD-KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 154 ---~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
.+.+...++|+++...- |...+...+.-.+.....+. .+..++..+...+.| .+|+.+-..|......+-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP--slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP--SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHcChhHHHHHH
Confidence 24566677777776654 44333333322222211222 233333444444443 34555555555444444444
Q ss_pred HHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 230 KAFLELKKT----K----------IDPDW--ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 230 ~~~~~m~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+++...... + -+|+. .++..+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 554443221 1 12333 23345566666777777777777777766332 3556666677777777
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchH--------HHHHHHHHhcCCH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVP--------NILLAAYINRNQL 365 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~ 365 (510)
++.+|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|....+ .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 777777777776664322 4455555566666777777777777776655433222111 2345566667777
Q ss_pred HHHHHHHHHHHh
Q 010458 366 EMAESFYNRLVT 377 (510)
Q Consensus 366 ~~A~~~~~~~~~ 377 (510)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777766666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-10 Score=108.41 Aligned_cols=253 Identities=11% Similarity=0.095 Sum_probs=158.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC
Q 010458 57 ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
.++-.+...|+.|+..+|.++|..||..|+.+.|- +|..|.-+. .|.....++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence 45666778899999999999999999999999998 999998775 7889999999999888888877665
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH-------hCCCCCCcchH---------------HHHHHHHHhCCCcCcH
Q 010458 137 MRGPDTCSALLHSYVQNKKSAEAEALMEKMS-------ECGFLKCPLPY---------------NHMLNLYISNGQLDKV 194 (510)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~p~~~~~---------------~~l~~~~~~~g~~~~a 194 (510)
.|.+.+|+.|..+|.+.|+...-..+=+.|. ..|+. ....| ...+......|-++.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999865222211122 12211 11111 1122222233334444
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
++++..+.......+... +++-+.... .+++-........+ .|+..+|..++++-...|+.+.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 444433322211111111 233332222 22222222222222 467777777777777777777777777777777
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 274 TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
|++.+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+-.+..+|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777666655555544 56666677777777777777777777766666655444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-08 Score=93.26 Aligned_cols=406 Identities=13% Similarity=0.065 Sum_probs=247.1
Q ss_pred cCCCCCccHHHH--HhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhH
Q 010458 33 KGAGGRDTLGRR--LLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110 (510)
Q Consensus 33 ~~~~~~~~~~~~--l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (510)
+-+.+++.+.-. .+-+....++|......-.+. ..-+.+.|+.+.-.+....++++|+..|..+...+ +.+...+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qil 112 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQIL 112 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhcc-CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHH
Confidence 445555555422 222222337777766665553 35567777777777777778888888888877764 5566666
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCCcchHHHHH------
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECG-FLKCPLPYNHML------ 182 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~------ 182 (510)
.-+.-.-+..|+++........+.+..|. ...|..++.++.-.|+...|..+++...+.. -.|+...+....
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n 192 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN 192 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 66666666777777777776666666554 5667777777777788888888877776544 245555554332
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-TSLYIKMELPE 261 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~g~~~ 261 (510)
......|.+++|++.+.............-..-...+.+.+++++|..++..+... .||...|... ..++.+-.+.-
T Consensus 193 ~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 193 QILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 23345666677776666655443334444455566677778888888888887766 3555544443 33443333444
Q ss_pred HHH-HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 262 KAA-TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 262 ~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
++. .+|....+.-+. ....-..=++......-.+..-.++..+.+.|+++ ++..+...|-.-...+-..++...+
T Consensus 271 ~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y 346 (700)
T KOG1156|consen 271 EALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSY 346 (700)
T ss_pred HHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHH
Confidence 444 555555544111 11111111222222222334555666666666654 3444444333222222112222222
Q ss_pred H----hcc----------CCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 010458 341 E----SIS----------GTGDPRV--PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 341 ~----~~~----------~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a 403 (510)
. ..+ -+|.... +-.++..+-..|+++.|..+++..... .|+.+ .|..=.+.+...|++++|
T Consensus 347 ~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eA 424 (700)
T KOG1156|consen 347 QHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEA 424 (700)
T ss_pred HhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHH
Confidence 1 111 1344333 345778888999999999999999976 55543 555566888999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 404 LECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
..+++++.+. -.||..+-.--..-..+.++.++|.++.....+.|.
T Consensus 425 a~~l~ea~el---D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 425 AAWLDEAQEL---DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhc---cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9999999863 345555544566677889999999999999988876
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-08 Score=88.75 Aligned_cols=417 Identities=11% Similarity=0.044 Sum_probs=243.4
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.-|..+++.-...+-.-...+-..+...+.+.|++++|+..+..+.... .++......+.-...-.|.+.+|..+-.+
T Consensus 39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 5566666654432222112222334556678899999999999988765 45666777777777788999999998887
Q ss_pred cccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHH
Q 010458 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212 (510)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 212 (510)
.++. +..-..++....+.++-++-..+-+.+.+. ..---+|.......-.+.+|+++|.++.... |+-...
T Consensus 117 a~k~---pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-~ey~al 187 (557)
T KOG3785|consen 117 APKT---PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-PEYIAL 187 (557)
T ss_pred CCCC---hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhhh
Confidence 6643 333334444444555554444444333321 1111223333333334556666666665442 222222
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-------------------------------
Q 010458 213 NL-WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM--E------------------------------- 258 (510)
Q Consensus 213 ~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--g------------------------------- 258 (510)
|. +.-+|.+..-++-+.++++--.+. ++.+....|..+....+. |
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 22 223344555555555555544332 122223333222222221 1
Q ss_pred --ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC-------C
Q 010458 259 --LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-------E 329 (510)
Q Consensus 259 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 329 (510)
+-+.|++++-.+.+. . +..-..|+--|.+.+++.+|..+.+++.- ..|.......+. +...| .
T Consensus 267 FrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreH 338 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREH 338 (557)
T ss_pred EeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHH
Confidence 223344444433332 1 22334566667889999999988877522 223333333222 22333 3
Q ss_pred HHHHHHHHHHHHhccCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010458 330 FEKAENIYDEWESISGTGDPRV-PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408 (510)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 408 (510)
..-|.+.|+.+-+.+..-|... -.++...+.-..++++.+.+++.....-...|... -.+..+++..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHh
Confidence 5567777777666655544332 45666777777889999999998887644434444 457889999999999999998
Q ss_pred HHhhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC
Q 010458 409 KAIGSVRKWVPDHRLI-TAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK--MPLIIVERMQKDN 483 (510)
Q Consensus 409 ~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~ 483 (510)
..... .++ |..+| ..+.++|.++|+.+.|..++-++ +.+ .-.....+..-|.+.++ .|...|+.+..
T Consensus 418 ~is~~--~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-- 489 (557)
T KOG3785|consen 418 RISGP--EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-- 489 (557)
T ss_pred hhcCh--hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--
Confidence 88753 333 44455 56678899999999988776544 333 23456667788888888 78888888865
Q ss_pred CCCCHHHHHHHHhhc
Q 010458 484 VQMDAETQKVLKITS 498 (510)
Q Consensus 484 ~~pd~~t~~~l~~~~ 498 (510)
..|++..|.-=-.+|
T Consensus 490 lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 490 LDPTPENWEGKRGAC 504 (557)
T ss_pred cCCCccccCCccchH
Confidence 467777776555555
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-08 Score=91.29 Aligned_cols=405 Identities=10% Similarity=0.062 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (510)
..|-..+..+.++|+.......|+.....-.+..-...|...+......+-.+.+..++++..+. +|..-+-.+..++
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 45666666777788888888888877765323333445667777777777777888888888776 4455677778888
Q ss_pred hCCCHHHHHHHHHHHHhCC------CCCCcchHHHHHHHHHhCCC---cCcHHHHHHHHHhCCCC-ChhHHHHHHHHHHh
Q 010458 152 QNKKSAEAEALMEKMSECG------FLKCPLPYNHMLNLYISNGQ---LDKVPQMLQELKKNTSP-DVVTYNLWLAACAS 221 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 221 (510)
..+++++|-+.+....... .+.+-..|..+....++.-+ --....+++.+....+. -...|..|...|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 8888888888887765321 12344556666666655433 23445555555544222 34568888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHHHccC----
Q 010458 222 QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM----------------E------LPEKAATTLKEMEKRTC---- 275 (510)
Q Consensus 222 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~~~~~~~---- 275 (510)
.|.++.|.++|++....- .+..-|..+.+.|+.- | +++-.+..|+.+...++
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 888888888888865542 2333333333333321 1 22333444444443311
Q ss_pred -------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 276 -------RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND------AEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 276 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
+.++..|..-+. ...|+..+....|.++.+. +.|.. ..|..+.+.|-..|+.+.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 112333333222 2345566666667666654 33322 2366667777777777777777777665
Q ss_pred ccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHH
Q 010458 343 ISGTGD---PRVPNILLAAYINRNQLEMAESFYNRLVTKGIK----------P-------CYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 343 ~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~~~~~~ 402 (510)
...+-- ..+|..-...=.++.+++.|.++.+.....--. | +...|...+..--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 332211 123333334444556666677666655432000 0 11234444444444556666
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHc-C-C---ChHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS--TEIYNSLLRTYAKA-G-K---MPLII 475 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g-~---~a~~~ 475 (510)
...+|+++++. .+ .++.+.......+..+.-++++.+++++-...-+.+ .+.|+..+..+.+. | . .|..+
T Consensus 496 tk~vYdriidL--ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 496 TKAVYDRIIDL--RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHH--hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666666653 21 122222222223344444555555555544433321 24455544444432 1 1 45555
Q ss_pred HHHHHhCCCCCC
Q 010458 476 VERMQKDNVQMD 487 (510)
Q Consensus 476 ~~~m~~~~~~pd 487 (510)
|++..+ |++|.
T Consensus 573 FEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 573 FEQALD-GCPPE 583 (835)
T ss_pred HHHHHh-cCCHH
Confidence 555554 44444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-08 Score=95.80 Aligned_cols=411 Identities=15% Similarity=0.024 Sum_probs=273.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC--
Q 010458 60 RKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM-- 137 (510)
Q Consensus 60 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 137 (510)
.+++.....-++..|..+.-++...|+++.+.+.|++.... .-.....|..+...+...|.-..|..+++......
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33333345668888999999999999999999999987654 23456778888888889999999999998876665
Q ss_pred C-ChhhHHHHHHHHH-hCCCHHHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhCC-----------CcCcHHHHHHH
Q 010458 138 R-GPDTCSALLHSYV-QNKKSAEAEALMEKMSEC--GF--LKCPLPYNHMLNLYISNG-----------QLDKVPQMLQE 200 (510)
Q Consensus 138 ~-~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~ 200 (510)
| ++..+-..-..|. +.+..+++++.-.+.... +. ...+..|..+.-+|...- ...++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 3444444444454 346677777666665541 11 123444555555554321 13467778888
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChh
Q 010458 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRV 280 (510)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 280 (510)
..+..+.|+.+...+.--|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+.-.. |..
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~ 548 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHV 548 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhh
Confidence 8777555665555566667788999999999999888766778889999999999999999999999877665111 221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------cC-----CC--ChhhHHHHHHHHHhcCCHHH
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSL---------------------FA-----KM--NDAEYTCVISSLVKLGEFEK 332 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~-----~~--~~~~~~~l~~~~~~~~~~~~ 332 (510)
....-+..-...++.+++......+... |. .| ...++..+.......+....
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 1112222223355666655544443221 00 00 01112222111110000000
Q ss_pred HHHHHHHHHhccCCCCc--------chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010458 333 AENIYDEWESISGTGDP--------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
-... +......|.. ..|......+.+.++.++|...+.+..... .-....|......+...|+..+|.
T Consensus 629 se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHH
Confidence 0000 1111112221 234556677888899999998888888753 335566777777888899999999
Q ss_pred HHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHH
Q 010458 405 ECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEH--LLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERM 479 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m 479 (510)
+.|..+.. +.|+ +....++..++.+.|+..-|.. ++.++.+.++.+.+.|..+...+-+.|+ .|.+.|...
T Consensus 705 ~af~~Al~----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 705 EAFLVALA----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHh----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999985 3554 5678899999999999888888 9999999999999999999999999999 777888776
Q ss_pred Hh
Q 010458 480 QK 481 (510)
Q Consensus 480 ~~ 481 (510)
.+
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 54
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-09 Score=103.58 Aligned_cols=280 Identities=13% Similarity=0.071 Sum_probs=167.7
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-----ChhhHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-----GLSSAE 127 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~ 127 (510)
.+|.+.|+.-.. .+......+......+.+.|+.++|..++..+.+.+ |.+..-|..+..+..-.. ..+...
T Consensus 21 ~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 21 EEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred HHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 666666655222 223333445666777777888888888888887775 444444444444442222 455666
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhCCCHH-HHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--
Q 010458 128 NFFENLPDKMRGPDTCSALLHSYVQNKKSA-EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-- 204 (510)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 204 (510)
++++.+....|.......+.-.+.....+. .+...+..+..+|+++ +|+.|-..|....+.+-..+++......
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~ 174 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLE 174 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhc
Confidence 777777666555444433332233323333 3444556666666543 4555555555444444444455444322
Q ss_pred -------------CCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 205 -------------TSPDV--VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 205 -------------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+|.. .++..+...|-..|++++|++++++.++.. |+ +..|..-.+.+-+.|++.+|.+.++
T Consensus 175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred ccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 12333 344556677777888888888888777663 43 5667777777788888888888888
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE--------YTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
.....+.. |...=+.....+.+.|++++|.+++......+..|.... ......+|.+.|++..|++-|..+
T Consensus 253 ~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 253 EARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 87776555 666666677777778888888888777766554332211 133456677777777777777766
Q ss_pred H
Q 010458 341 E 341 (510)
Q Consensus 341 ~ 341 (510)
.
T Consensus 332 ~ 332 (517)
T PF12569_consen 332 L 332 (517)
T ss_pred H
Confidence 5
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-08 Score=88.66 Aligned_cols=299 Identities=13% Similarity=0.077 Sum_probs=220.1
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECG-FLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
.++...|...+-.+.... ++-|......+...+...|+.++|...|++..-..+-+........-.+.+.|+++....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 445445544444333322 3446677888999999999999999999998766555555555556666788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (510)
...+.... ..+...|-.-+......+++..|+.+-++.++.... +...|-.-...+...+++++|.-.|+..+.. -+
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML-AP 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-ch
Confidence 77775432 234444555555667788899999999998887544 5666766678888999999999999998764 22
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 010458 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL-AAYI-NRNQLEMAESFYNRLVTKGIKPCY-TTWE 388 (510)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 388 (510)
-+...|.-++.+|...|.+.+|.-+-+...+. .+.+..+...+. ..+. .-.--++|..++++.+.. .|+. ..-+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHH
Confidence 35688999999999999999988777766542 233455554442 2222 112347888888887775 4543 3556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSL 461 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 461 (510)
.+...+...|..++++.++++.+. ..||....+.|.+.+...+.+++|.+.|....+.+|.+..+..-|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 777888899999999999999994 489999999999999999999999999999999999876555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-08 Score=94.06 Aligned_cols=405 Identities=14% Similarity=0.083 Sum_probs=247.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|...|-+-+.-. ++|...|+-=..+|.+.|++++|++=-.+-.+.+ |.-+..|...+.++.-.|++++|+..|.+
T Consensus 19 ~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred HHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 77777777776655 4477778888888888899888887777766654 55667888888888888999999999888
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHH---HHHHHHHHhC---CCCCCcchHHHHHHHHHhCC-------CcCcHHHHH
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEA---EALMEKMSEC---GFLKCPLPYNHMLNLYISNG-------QLDKVPQML 198 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g-------~~~~a~~~~ 198 (510)
-.+..|+ ...++.+.+++.......+. -.++..+... ........|..++..+-+.- +.+...+..
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 8887764 56777777776211000000 0011111100 00001112222222211100 000000000
Q ss_pred HHHHh----------------CCCC------------C----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 199 QELKK----------------NTSP------------D----------VVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 199 ~~~~~----------------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
-.+.. ...| | ..-...+.++..+..+++.+.+-+....+..
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~- 254 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA- 254 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-
Confidence 00000 0000 0 1124556677777788888888888877654
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS-------LLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (510)
.+..-++....+|...|.+.++...-+...+.|.. ...-|+. +..+|.+.++++.++.+|.+.......|+
T Consensus 255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~ 332 (539)
T KOG0548|consen 255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD 332 (539)
T ss_pred -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH
Confidence 45555667777788888877777777766665443 2233333 33455556777888888887665544433
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010458 314 DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392 (510)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 392 (510)
. ..+....+++........-.+ |.. .-...-...+.+.|++..|+..|.+++..++. |...|....-
T Consensus 333 ~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAa 400 (539)
T KOG0548|consen 333 L---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAA 400 (539)
T ss_pred H---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHH
Confidence 2 223334444444444333222 221 11122366778899999999999999988643 7788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCC-
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK-AGK- 470 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~- 470 (510)
+|.+.|.+..|++-.+..++. -++....|..=..++....+++.|.+.|++..+.++.+.+....+.++... .|+
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~ 477 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDE 477 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCC
Confidence 999999999999998888863 233455666666677777899999999999999998776666666555554 334
Q ss_pred ChHHHHHH
Q 010458 471 MPLIIVER 478 (510)
Q Consensus 471 ~a~~~~~~ 478 (510)
...++.++
T Consensus 478 ~~ee~~~r 485 (539)
T KOG0548|consen 478 TPEETKRR 485 (539)
T ss_pred CHHHHHHh
Confidence 44444444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-09 Score=92.46 Aligned_cols=269 Identities=9% Similarity=-0.007 Sum_probs=116.5
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
++.+......+.+.+...|+.++|+..|++....+|. ........-.+.+.|+++....+...+.... .-+...|-.-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3444444555555555555555555555555444332 1111111222334455554444444443321 0122223333
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
.......++++.|+.+-++..+..+.+...|-.-...+...++.++|.-.|+...... +-+...|.-|+++|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 3333344445555555555444444444444444444555555555555555543321 223445555555555555555
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHH-HHHHh-cCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLL-SLYTN-MGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
+|.-.-+...+. .+.+..+.+.+. ..+.- ..--++|.+++++... ..|+- ...+.+...|...|..+++..+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 554444433332 111333333331 11111 1122444455444433 22322 223334444444555555555555
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
..... .||....+.|.+.+...+.+++|...|...++.
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44421 344455555555555555555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-09 Score=87.10 Aligned_cols=198 Identities=9% Similarity=-0.070 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 151 (510)
+...|.-.|.+.|++..|..-+++..+.+ |.+..++..+...|.+.|..+.|.+.|++..+..| +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45566677888888888888888888875 67777888888888888888888888888887766 4677888888888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
..|++++|...|+.......-| -..+|..+.-+..+.|+.+.|.+.|++..+..+....+.-.+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888877642211 245677777777788888888888888877766667777777788888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
+++.....+. ++....-..|..-...|+.+.+.+.=.++.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888776664 77777767777777788887777766666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=103.60 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----c-CCC-
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKK-----TKID--PDWISYSTLTSLYIKMELPEKAATTLKEMEKR-----T-CRK- 277 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~- 277 (510)
++.++..+...+++++|..+++...+ .|.. .-..+++.|...|.+.|++++|.++++++... | ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 44455556666666666666655321 1110 12345667777777777777777777766554 1 111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAK-MN-DAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
....++.+...|.+.+++++|.++|.+...- |+. |+ ..+|..|...|...|++++|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1345666777777777777666666654321 211 12 2457777777777777777777776655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-08 Score=85.11 Aligned_cols=378 Identities=13% Similarity=0.071 Sum_probs=245.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.+|..+++.+..+. .++...+--|.-.+.-.|.+.+|..+-... |.++-.-..++...-+.|+-++-..+.+.
T Consensus 74 ~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 74 EEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 88888888877755 455555555555556678899998877654 34555556666666777877777666666
Q ss_pred cccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH-HHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 133 LPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML-NLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
+.+. ..--.+|.+..--.-.+.+|+++|.+....+ |+-...|..+ -+|.+..-++-+.+++....+..+.++.+
T Consensus 147 LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 147 LQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred Hhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 5543 2333445555445567889999999988765 5666666544 44567777888888888887776666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------------CCCC-----HHHHHHHHHHHHhcCCh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTK--------------------------IDPD-----WISYSTLTSLYIKMELP 260 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------------~~~~-----~~~~~~l~~~~~~~g~~ 260 (510)
.|..+....+.=+-..|++-.+.+.+.+ +-|. +..--.|+-.|.+.+++
T Consensus 222 ~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 222 KNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV 301 (557)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccH
Confidence 6666554444322222222222221111 0011 11223456678899999
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-------KDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEK 332 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 332 (510)
.+|..+.+++.-. ++.-|-.-.-.++..|+ ..-|.+.|+..-..+..-|. ..-.++...+.-..++++
T Consensus 302 qeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 302 QEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred HHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 9999887766421 22222222222333333 44466666655444444443 235666777777889999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW-ELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
++-.+..+...-...|...+| +..+++..|++.+|+++|-.+....++ |..+| ..+.++|.+.++++-|++++-++-
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 999999888655454555554 788999999999999999888766555 55555 456688999999999999887764
Q ss_pred hccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 412 GSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 412 ~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
. +.+. .....+..-|.+.+.+--|-+.|+.+...+|.
T Consensus 456 t-----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 456 T-----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred C-----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 2 2222 34456667899999999999999999888774
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=97.64 Aligned_cols=94 Identities=6% Similarity=-0.159 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHh
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQ 152 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 152 (510)
|..+...+.+.|++++|...|+...+.. |.++..|..+...+...|++++|...|+...+..|+ ..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555543 445555555555555555555555555555555443 4445555555555
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010458 153 NKKSAEAEALMEKMSEC 169 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~ 169 (510)
.|++++|.+.|+...+.
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-09 Score=102.68 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHc-----cCC
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKT-----K-IDPDWIS-YSTLTSLYIKMELPEKAATTLKEMEKR-----TCR 276 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 276 (510)
..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556778888888888888888775442 2 1233222 344777888899999999999888664 222
Q ss_pred -C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-----cCCC-Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc---c
Q 010458 277 -K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-----FAKM-ND-AEYTCVISSLVKLGEFEKAENIYDEWESI---S 344 (510)
Q Consensus 277 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 344 (510)
| -..+++.|..+|.+.|++++|..+++.+..- +..+ .. ..++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 1346777888899999998888887776442 1111 11 23667777888889999999888876542 1
Q ss_pred CCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 010458 345 GTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTK----GI--KP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 345 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 413 (510)
+.++ ..+++.|...|...|++++|.+++++.+.. +. .+ ....++.|...|.+.+++.+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 346888999999999999999999987652 11 11 2346788888898899988888888876643
Q ss_pred cCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 414 VRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 414 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
...+.|+ ..+|..|...|...|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2122232 4578889999999999999999888765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=78.36 Aligned_cols=49 Identities=35% Similarity=0.459 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-09 Score=85.00 Aligned_cols=199 Identities=16% Similarity=0.024 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.+...|.-.|...|+...|..-+++.++.+.. +..+|..+...|.+.|+.+.|.+.|++..+..+.+..+.|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 34556667777788888888888887776522 45577777777778888888888888877776667777788888888
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
..|.+++|...|++..... ...-..+|..+.-+..+.|+.+.|...|++..+..+. ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888887765432 2222456777777777888888888888877776544 4556667777777778888888
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
.+++.....+. ++..+.-..|..-...||.+.+.+.=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88777766654 6666776677777777777777666555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-10 Score=106.41 Aligned_cols=253 Identities=12% Similarity=0.128 Sum_probs=140.7
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|+-. .+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666677777777777777777777777666 66666655 3336666666666666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHH----ccCCCChhhHH--------------HHHHHHHhcCCHHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEK---AATTLKEMEK----RTCRKNRVAYS--------------SLLSLYTNMGYKDEVL 299 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~ 299 (510)
.|...||..|..+|...||+.. +.+.+..+.. .|+......+- ..+.-....|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776543 2221111111 12210011110 1111122223333333
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (510)
+++..+-..... ..+..+++-+.. +..-.+++........-.|++.+|..++.+-...|+++.|..++.+|.+.|
T Consensus 160 kll~~~Pvsa~~---~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN---APFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHhhCCccccc---chHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 333322111000 011112322222 222333343333332225777778888887777888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC
Q 010458 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 436 (510)
+..+..-|..++.+ .++..-+..+++-|.+. |+.|+..|+...+..+.++|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHHHHhhhcchh
Confidence 77777777777665 66666777777777776 788888887777666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-08 Score=93.01 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCC---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRK---WV---PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
....++...|+.+.|...++.+...... .. ...........++...|+.++|.+.+.+....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777776653111 00 01122223333456788888888888777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=77.79 Aligned_cols=50 Identities=40% Similarity=0.527 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 207 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 256 (510)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-08 Score=92.15 Aligned_cols=200 Identities=13% Similarity=0.023 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-hhhHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEYTCVISS 323 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 323 (510)
..|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|...|+...+. .|+ ...+..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555555666666666666666666665433 4556666666666666666666666666553 232 3445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...|++++|.+.++...+.. |+..........+...++.++|...|++..... .|+...+ . ......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH
Confidence 666666666666666665433 221111111112233455666666665544321 1221111 1 112223333322
Q ss_pred HHHHHHHhhccC-C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 404 LECFKKAIGSVR-K--WVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 404 ~~~~~~~~~~~~-~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+.+..+.+... . +.| ....|..+...+.+.|++++|...|++..+.++++
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 23333332100 0 111 23456666777777777777777777777666653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-08 Score=90.79 Aligned_cols=304 Identities=10% Similarity=-0.015 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhcccCCC---C-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMR---G-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
+..|..+...+...|+.+.+.+.+.......+ + ..........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 33444444444444555554444444332221 1 1111122233445566666666666655543 112222221 1
Q ss_pred HHHHh----CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 183 NLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258 (510)
Q Consensus 183 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 258 (510)
..+.. .+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 12222 2333333333333111122233444455556666777777777777766653 233455666666777777
Q ss_pred ChHHHHHHHHHHHHccCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhH-H--HHHHHHHhcCCHH
Q 010458 259 LPEKAATTLKEMEKRTCR-KNR--VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEY-T--CVISSLVKLGEFE 331 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~--~l~~~~~~~~~~~ 331 (510)
++++|...+++....... |+. ..|..+...+...|++++|..++++.......+.. ... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 777777777766654221 121 23445666666777777777777766432211111 111 1 1122222233222
Q ss_pred HHHHH--HHHHHhccCCCCcchH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCC
Q 010458 332 KAENI--YDEWESISGTGDPRVP--NILLAAYINRNQLEMAESFYNRLVTKGIKP--------CYTTWELLTWGYLKKGQ 399 (510)
Q Consensus 332 ~a~~~--~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~~~ 399 (510)
.+..+ +..............+ .....++...|+.+.|...++.+......+ ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1111111101111112 245556667778888888887776522110 11122223344567888
Q ss_pred HHHHHHHHHHHhhc
Q 010458 400 MEKVLECFKKAIGS 413 (510)
Q Consensus 400 ~~~a~~~~~~~~~~ 413 (510)
.++|.+.+..++..
T Consensus 323 ~~~A~~~L~~al~~ 336 (355)
T cd05804 323 YATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-07 Score=80.90 Aligned_cols=314 Identities=11% Similarity=0.003 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh-hhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP-DTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 151 (510)
-..-+.+.+...|++..|+.-|....+-+ |.+-.++..-...|...|+...|+.-+..+.+..||- ..--.-...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 34456677888899999999999887643 4444445555678888999999999898888886662 22333445678
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
+.|.+++|..-|+.+.+.. |+..+- ..++.+.-..++- ......+..+...||...|+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~---------------~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEH---------------WVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHH---------------HHHHHHHHHHhcCCchhhHHHH
Confidence 8999999999999998865 432221 1111111000000 1111122233445555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK 311 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 311 (510)
...+.+.. +-|...|..-..+|...|++..|+.-++...+..-. +..++..+-..+...|+.+.++...++..+ ..
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 55555542 234444555555555555555555555554443222 344444455555555555555555555544 23
Q ss_pred CChhh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 312 MNDAE----YTCV---------ISSLVKLGEFEKAENIYDEWESISGTGDPRV---PNILLAAYINRNQLEMAESFYNRL 375 (510)
Q Consensus 312 ~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 375 (510)
||... |..+ +......++|.++.+-.+...+..+...... +..+-.++...|++.+|++...+.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 33321 1111 1123345677777777777766544422222 334445666677888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 010458 376 VTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 376 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 413 (510)
++... .|..++.--..+|.-...++.|+.-|+++.+.
T Consensus 334 L~~d~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 334 LDIDP-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HhcCc-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77532 24667777777888788888888888888753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-07 Score=96.17 Aligned_cols=268 Identities=10% Similarity=0.083 Sum_probs=113.0
Q ss_pred HHhCCCcCcHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHH
Q 010458 185 YISNGQLDKVPQMLQELKKNTS-PD----VVTYNLWLAACASQNDKETAEKAFLELKKT----KI-DPDWISYSTLTSLY 254 (510)
Q Consensus 185 ~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~ 254 (510)
+...|++++|...+++.....+ .+ ....+.+...+...|++++|...+.+.... |. .....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3445556666665555544211 11 122334444455556666666555554321 10 00112233344455
Q ss_pred HhcCChHHHHHHHHHHHHc----cCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCCC--hhhHHHHHHH
Q 010458 255 IKMELPEKAATTLKEMEKR----TCR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMN--DAEYTCVISS 323 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~ 323 (510)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 5556666666555554432 110 0 11123333444445566666655555543321 0111 1122333344
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCC-cchH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGD-PRVP-----NILLAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGY 394 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~ 394 (510)
+...|+++.|...++.......... ...+ ...+..+...|+.+.|..++............. .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 4555666666555555533110000 0000 001122333555555555554433321111100 022344445
Q ss_pred HhcCCHHHHHHHHHHHhhccCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRK--WVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
...|++++|...+.++...... ..+ ...+...+..++.+.|+.++|...+.+..+...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 5556666666666655542101 111 112344444555556666666666666655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-07 Score=89.05 Aligned_cols=389 Identities=10% Similarity=-0.052 Sum_probs=261.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHH-HhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS-KIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 131 (510)
..+.+.|++... +..-....|+.+...+...|.-..|+.+++.-.....-|+++..+......|. +.+.+++++++-.
T Consensus 340 ~~lae~fE~~~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~ 418 (799)
T KOG4162|consen 340 EVLAEQFEQALP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQ 418 (799)
T ss_pred HHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence 667777777554 33446677999999999999999999999887665433556666766666665 4577788777777
Q ss_pred hcccC--C----CChhhHHHHHHHHHhC-----------CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 132 NLPDK--M----RGPDTCSALLHSYVQN-----------KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 132 ~~~~~--~----~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
++... + ..+..|..+.-+|... ....++++.+++..+.+.. |+.+.-.+.--|+..++.+.|
T Consensus 419 kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sA 497 (799)
T KOG4162|consen 419 KAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSA 497 (799)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHH
Confidence 66652 1 2356666666655432 2345778888888877643 555555555667788899999
Q ss_pred HHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 195 PQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKT-KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 195 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
.+..++..+. ...+...|..+.-++...+++.+|+.+.+...+. |. |......-++.-..-++.++++.....+..
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999888 6678999999999999999999999999886443 21 111122223333345666666655544432
Q ss_pred c---------------------c-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--Ch------hh
Q 010458 273 R---------------------T-------CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--ND------AE 316 (510)
Q Consensus 273 ~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~------~~ 316 (510)
. | ..-...++..+..-....+........ +......| +. ..
T Consensus 576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHH
Confidence 1 0 000111222111111100000000000 11111112 21 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
|......+.+.++.++|.-.+.+..+.. +-....|......+...|+.++|.+.|......++. ++.+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 5556677888899999988888877543 345667777888888999999999999999886533 55678889999999
Q ss_pred cCCHHHHHH--HHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 397 KGQMEKVLE--CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 397 ~~~~~~a~~--~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
.|+..-|.. ++..+++. -+-+...|..+...+.+.|+.++|.+.|....+....
T Consensus 731 ~G~~~la~~~~~L~dalr~---dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRL---DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred hCCcchHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999888887 99999963 3457889999999999999999999999999887765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-07 Score=78.79 Aligned_cols=297 Identities=11% Similarity=0.029 Sum_probs=184.2
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHH-H
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA-L 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-l 146 (510)
....-.+.+.+..+.+..++..|++++..-.++. |.+......+..+|-...++..|...++++....|...-|.. -
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3333346677777788888899999888877764 456677778888888888899999999888877776544432 3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH--HHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL--YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND 224 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (510)
...+-+.+.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++.... .+..+.+.......+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecccc
Confidence 45566778888888888877653 222222222222 23467788888887776532 244555555566678889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-------------Chh--------hHH
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-------------NRV--------AYS 283 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------~~~ 283 (510)
++.|.+-|+...+.+--.....|+. .-+..+.|+.+.|++...++.++|++. |+. .-.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999998888766543334456664 445667888899999888888876531 111 111
Q ss_pred HHH-------HHHHhcCCHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHH
Q 010458 284 SLL-------SLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355 (510)
Q Consensus 284 ~l~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (510)
.++ ..+.+.++++.|.+.+-.|.-. ....|+.|...+.-. --.+++.+...-+.-+.+.++- ...|+..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 222 2334566666666666655321 123344554433211 1234455555555555554432 34566667
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 010458 356 LAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~ 374 (510)
+-.||+..-++.|-.++.+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 7777777767766666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-06 Score=77.87 Aligned_cols=161 Identities=13% Similarity=0.060 Sum_probs=108.6
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhccCCCCcc
Q 010458 281 AYSSLLSLYTN--MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD--------EWESISGTGDPR 350 (510)
Q Consensus 281 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~ 350 (510)
.+.+++..+.+ ...+..+..++...-+....-...+.-..+......|+++.|.+++. .+.+.+. .+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--Chh
Confidence 34444444332 22466677777766554322223456667778889999999999999 4444333 345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTK--GIKPCYT----TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 424 (510)
+...+...+.+.++.+.|..++.+.... .-.+... ++.-....-.+.|+-++|..++++..+ -.++|..+.
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k---~n~~d~~~l 495 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK---FNPNDTDLL 495 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH---hCCchHHHH
Confidence 6667788888888877788887776642 1112223 333344445567999999999999997 457889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 010458 425 TAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
..++.+|++. +.+.|..+-+.+
T Consensus 496 ~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 496 VQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999987 688888777655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-06 Score=76.03 Aligned_cols=325 Identities=11% Similarity=0.014 Sum_probs=227.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH-HHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP-DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY-NHM 181 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l 181 (510)
+.+..-..-+...+...|++..|+.-|....+.+|+. .++-.-...|...|+...|+.-+....+. +||...- ..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3445556667788888899999999999988885542 23333445677888888888888888875 3664321 223
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
...+.+.|.+++|..=|+.+.+..+.+.. ...+..+.-..++-. .....+..+...|+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~----~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL----VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch----hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 34567888888888888888776332211 111111111111111 1223455567789999
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
.|+.....+.+..+- |...|..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999987544 88899999999999999999998888876653 2345666677778889999999999988887
Q ss_pred hccCCCCcch----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 010458 342 SISGTGDPRV----PNIL---------LAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTWGYLKKGQMEKVLE 405 (510)
Q Consensus 342 ~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~ 405 (510)
+. .||... |..+ +......+++.++..-.+...+..+..... .+..+-.++...+++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 64 344322 2111 223455678888888888888764432223 33445567777899999999
Q ss_pred HHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 010458 406 CFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458 (510)
Q Consensus 406 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 458 (510)
...+.++ +.|+ +.++.--..+|.-...++.|+.-|+...+.+..+..+-
T Consensus 329 qC~evL~----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 329 QCKEVLD----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHh----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999985 3555 88888888999999999999999999999887765443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-06 Score=92.04 Aligned_cols=413 Identities=12% Similarity=0.021 Sum_probs=237.4
Q ss_pred CCcHHHHHHHHHHcCCC--C-C----HHHHHHHHHHHHhcc----ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHh
Q 010458 52 KRSAAITMRKWKEEGHT--V-H----KYELNRIVRELRKLK----RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKI 120 (510)
Q Consensus 52 ~~~a~~~~~~~~~~~~~--~-~----~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (510)
.+++.++++.+.+.|.- + + .+.|+-++..+.+.. ..++... .+......+...
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~----------------lh~raa~~~~~~ 354 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPE----------------LHRAAAEAWLAQ 354 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHH----------------HHHHHHHHHHHC
Confidence 36678888888887752 1 1 123455555444321 1222222 222334445566
Q ss_pred cChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 121 RGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
|++.+|............-..........+...|+++.+..+++.+.......++.........+...|+++++..++..
T Consensus 355 g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 355 GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77766666555543221111222223344556777777777776653211112333334445555677888888888877
Q ss_pred HHhCCC-------CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHH
Q 010458 201 LKKNTS-------PD--VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW----ISYSTLTSLYIKMELPEKAATTL 267 (510)
Q Consensus 201 ~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~ 267 (510)
...... +. ......+...+...|+++.|...+++..+.-...+. ...+.+...+...|++++|...+
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~ 514 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMM 514 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 654311 11 122233344556788898888888886553111121 23456667778889999888888
Q ss_pred HHHHHc----cC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCC--C-ChhhHHHHHHHHHhcCCHHHHHH
Q 010458 268 KEMEKR----TC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAK--M-NDAEYTCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 268 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 335 (510)
++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|..
T Consensus 515 ~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 515 QQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 877643 11 111235566677788889999888888776542 211 1 12334455566777799998888
Q ss_pred HHHHHHhcc--CCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHH
Q 010458 336 IYDEWESIS--GTG--DPRVPNILLAAYINRNQLEMAESFYNRLVTKG--IKPCYT--TW--ELLTWGYLKKGQMEKVLE 405 (510)
Q Consensus 336 ~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~~~~~~a~~ 405 (510)
.+++..... ..+ ....+..+...+...|+.+.|...+++..... ...... .. ...+..+...|+.+.|..
T Consensus 595 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 595 CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 888765421 111 23334456667778889888888888775421 111111 11 112244455788888888
Q ss_pred HHHHHhhccCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--CHHHHHHHHHHHHHcCC--ChHH
Q 010458 406 CFKKAIGSVRKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNA----GHV--STEIYNSLLRTYAKAGK--MPLI 474 (510)
Q Consensus 406 ~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~--~a~~ 474 (510)
++...... ..... ...+..+..++...|++++|...+++.... +.. ...+...+..++.+.|+ .|..
T Consensus 675 ~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 675 WLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776542 11111 112456777788888898888888877653 222 23567777788888888 7777
Q ss_pred HHHHHHhC
Q 010458 475 IVERMQKD 482 (510)
Q Consensus 475 ~~~~m~~~ 482 (510)
.+.+..+.
T Consensus 753 ~L~~Al~l 760 (903)
T PRK04841 753 VLLEALKL 760 (903)
T ss_pred HHHHHHHH
Confidence 77766543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-07 Score=81.48 Aligned_cols=400 Identities=12% Similarity=-0.023 Sum_probs=250.0
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKS 156 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 156 (510)
-.+.+..|+++.|+..|.+..... |++...|..-..++...|++++|.+=-.+-.+..|+ +..|.....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678899999999999998875 668888889999999999999998887777777776 78999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc---CcHHHHHHHHHhC----CCCChhHHHHHHHHHHhc-------
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL---DKVPQMLQELKKN----TSPDVVTYNLWLAACASQ------- 222 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~------- 222 (510)
++|+..|.+-++... -+...++-+..++...... -.--.++..+... .......|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999999888652 2445566666666211000 0000111111111 000112233333222111
Q ss_pred ---CCHHHHHHHHHHH-----HhC-------CCCC------------C----------HHHHHHHHHHHHhcCChHHHHH
Q 010458 223 ---NDKETAEKAFLEL-----KKT-------KIDP------------D----------WISYSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 223 ---~~~~~a~~~~~~m-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~g~~~~A~~ 265 (510)
..+..+...+... ... +..| | ..-...+.+...+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 0011111111100 000 0111 0 0113456777777788888888
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH-------HHHHHHHHhcCCHHHHHHHHH
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY-------TCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~ 338 (510)
-+....+.. -+..-++....+|...|.+.++...-....+.|.. ...-| ..+..++.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888887764 35666677777888888877777666665554422 11122 223345556677888888888
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 418 (510)
+.......|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|+..|.+++.. .+
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P 389 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DP 389 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CC
Confidence 76654333322 233444555555555444433221 112223366788999999999999999974 35
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHh
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKI 496 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~ 496 (510)
-|...|....-+|.+.|.+..|+.-.+...+.++.....|..=..++....+ .|++.|.+-.+. .|+..-+.--++
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 5778899999999999999999999999999988766666555555544444 677777776553 355554444444
Q ss_pred hc
Q 010458 497 TS 498 (510)
Q Consensus 497 ~~ 498 (510)
-|
T Consensus 468 rc 469 (539)
T KOG0548|consen 468 RC 469 (539)
T ss_pred HH
Confidence 33
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-09 Score=91.78 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++..+.++.++.+...++......|+
T Consensus 183 ~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 183 YQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp CCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 4444444444433 3334444444444444444444444444444444444444444444444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-05 Score=72.93 Aligned_cols=406 Identities=13% Similarity=0.088 Sum_probs=247.9
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 146 (510)
.|-|..+|+.||+-+..+ ..+++.+.++++... +|.++..|..-+......++++..+.+|.+....-.+...|...
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 477999999999987666 999999999999875 68899999999999999999999999999987766677888777
Q ss_pred HHHHHh-CCCHHH----HHHHHHHH-HhCCCCCC-cchHHHHHHHHH---------hCCCcCcHHHHHHHHHhCCCCCh-
Q 010458 147 LHSYVQ-NKKSAE----AEALMEKM-SECGFLKC-PLPYNHMLNLYI---------SNGQLDKVPQMLQELKKNTSPDV- 209 (510)
Q Consensus 147 ~~~~~~-~~~~~~----A~~~~~~~-~~~~~~p~-~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~- 209 (510)
++--.+ .|+... ..+.|+-. .+.|+.+- ...|+..+..+- ...+.+...++|+++....-.+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764332 233222 23334433 34453332 234555554332 23355667777777765411121
Q ss_pred ------hHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHhcC-
Q 010458 210 ------VTYNLWLAAC-------ASQNDKETAEKAFLELKK--TKIDPDWIS---------------YSTLTSLYIKME- 258 (510)
Q Consensus 210 ------~~~~~l~~~~-------~~~~~~~~a~~~~~~m~~--~~~~~~~~~---------------~~~l~~~~~~~g- 258 (510)
..|..=|+.. -+..++..|.+++++... .|+.....+ |..+|..=...+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222222211 223456777777777532 232211111 333333211111
Q ss_pred -----Ch--HHHHHHHHHHHH-ccCCCChhhHH-----HHHHHHHhcCC-------HHHHHHHHHHHHHhcCCCChhhHH
Q 010458 259 -----LP--EKAATTLKEMEK-RTCRKNRVAYS-----SLLSLYTNMGY-------KDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 259 -----~~--~~A~~~~~~~~~-~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
.. ....-++++... .+..|+..... ..-+.+...|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 111222333222 23333332211 11122333333 345566666555432222333344
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 010458 319 CVISSLVKL---GEFEKAENIYDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWG 393 (510)
Q Consensus 319 ~l~~~~~~~---~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 393 (510)
.+.+---.. +..+....++++....- ..|+ -+|..++..-.+..-++.|..+|.++.+.+..+ ++..+++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 333221111 12556666777666532 2333 467778888888888999999999999987776 66777888877
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCC
Q 010458 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 470 (510)
+| .++..-|.++|+--+. .+.-++.-....++-+...|+-..++.+|++......+ ..++|..++.--..-|+
T Consensus 412 ~c-skD~~~AfrIFeLGLk---kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLK---KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred Hh-cCChhHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 76 4788899999998886 44445555577888889999999999999999887443 46899999999999999
Q ss_pred --ChHHHHHHHH
Q 010458 471 --MPLIIVERMQ 480 (510)
Q Consensus 471 --~a~~~~~~m~ 480 (510)
.+..+-+++.
T Consensus 488 L~si~~lekR~~ 499 (656)
T KOG1914|consen 488 LNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHHHH
Confidence 4555555553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=89.48 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
....+..|.+.++++.|.+.++.|.+
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.5e-07 Score=75.65 Aligned_cols=297 Identities=12% Similarity=0.043 Sum_probs=209.2
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH-H
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH-M 181 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l 181 (510)
......+...+..+.+..+++.|++++..-.+..| +......|..+|-...++..|-..|+.+...- |...-|.. -
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~ 84 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQ 84 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 34455677888888999999999999998888877 56677788889999999999999999998754 55555543 3
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVT--YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
...+.+.+.+..|+.+...|... |+... ...-.......+|+..+..++++....| +..+.+...-...+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 45677889999999999988754 22222 1222223446789999999998875432 44555666666789999
Q ss_pred hHHHHHHHHHHHHc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-------------Chhh--------H
Q 010458 260 PEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-------------NDAE--------Y 317 (510)
Q Consensus 260 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~--------~ 317 (510)
++.|.+-|+...+- |.. ....|+.-+ +..+.++++.|+++..++...|++. |... -
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999998876 454 556676544 4556789999999999998877542 1110 1
Q ss_pred HHHH-------HHHHhcCCHHHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010458 318 TCVI-------SSLVKLGEFEKAENIYDEWESI-SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWEL 389 (510)
Q Consensus 318 ~~l~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 389 (510)
+.++ ..+.+.++++.|.+.+..|.-. ....|+.|...+.-.- ..+++.+..+-+.-+.+.++- ...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 2222 3345778899998888777532 2345666665543322 234555555556666666553 4578889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 010458 390 LTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 390 l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
++-.||+..-++-|-+++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 9999999999998888887643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.3e-08 Score=88.81 Aligned_cols=253 Identities=15% Similarity=0.076 Sum_probs=162.5
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 191 (510)
.+.-+.+.|++.+|.-.|+.....+| +...|..|......+++-..|+..+.+..+.... +..+...|.-.|...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34455677777788777877777766 3677777777777777777777777777776522 455666666777777777
Q ss_pred CcHHHHHHHHHhCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 192 DKVPQMLQELKKNTSPDV---------VTYNLWLAACASQNDKETAEKAFLEL-KKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
..|++.+++.....+|-. ..-+. ..+.....+....++|-++ .+.+..+|...+..|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 777777777654322110 00000 1122223344444555444 44444466677777777788888888
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
+|.+.|+......+. |...||.|...++...+.++|+..|.++++ +.|.- .+...|.-+|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888888876555 677888888888888888888888888877 44543 33344445677888888888777665
Q ss_pred Hhcc---------CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 341 ESIS---------GTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 341 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
+... ..++..+|..|=.++.-.++.|.+...
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 4311 122335666666666666666644443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-06 Score=83.25 Aligned_cols=380 Identities=12% Similarity=0.016 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEK 165 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (510)
...|+..|=+..+.. +.-...|..++..|....+...|.+.|+++.+.++ +...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555666665555543 34455777788888777777788888888777755 466777788888888888888877433
Q ss_pred HHhCCCC-CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 166 MSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244 (510)
Q Consensus 166 ~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 244 (510)
..+.... .-...|....-.|.+.++..+|+.-|+...+..+.|...|..++.+|.++|.+..|.++|++.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~- 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL- 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-
Confidence 3332110 011223344445667778888888888777776667888888888888888888888888776554 333
Q ss_pred HHHHH--HHHHHHhcCChHHHHHHHHHHHHc------cCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-------HHHhc
Q 010458 245 ISYST--LTSLYIKMELPEKAATTLKEMEKR------TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK-------MMSLF 309 (510)
Q Consensus 245 ~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~ 309 (510)
.+|.. ..-.-+..|.+.+|+..+...... +..--..++..+...+...|=..++..++++ .....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22222 223345667777777777766543 1111122333333333333322222222222 22211
Q ss_pred CCCChhhHHHHHHHH-----------------------HhcCCH---H---HHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 310 AKMNDAEYTCVISSL-----------------------VKLGEF---E---KAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 310 ~~~~~~~~~~l~~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
...+...|-.+.++| -..+.. + -+.+.+-.-. ....+..+|..++..|.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHH
Confidence 111111121111111 111111 1 0111111000 11123445555554443
Q ss_pred h----c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 361 N----R----NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 361 ~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+ . .+...|...+.+.++.. ..+..+|+.|.-. ...|++.-+...|-+... ..+-...+|..+...+.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEE
Confidence 3 1 23457888888877653 2256667666554 666888888888877765 33456778888888899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVER 478 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~ 478 (510)
+..+++.|...|.......|.+...|-.........|+ ++..+|..
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999998887777776666667776 66666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-05 Score=78.42 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHH
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (510)
+..|..+..+-.+.|.+.+|.+-|-+. -|+..|..+++...+.|.+++-.+.+.-..+....|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345555555555555555555544221 133455555555555666665555555444443333322 345555
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
|++.++..+..+++ ..|+......+.+-|...+.++.|.-+|..+ ..|..|...+...|+++.|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 55555554443332 2244444445555555555555555444322 2344455555555555554
Q ss_pred HHH
Q 010458 369 ESF 371 (510)
Q Consensus 369 ~~~ 371 (510)
...
T Consensus 1240 VD~ 1242 (1666)
T KOG0985|consen 1240 VDA 1242 (1666)
T ss_pred HHH
Confidence 443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-06 Score=76.32 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP- 260 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~- 260 (510)
..+...++.++|+.++.++.+..+.+..+|+.-..++...| ++++++..++++.+.. +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33444555666666666665554445555555555555554 3556666665555443 22334444443334444432
Q ss_pred -HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 010458 261 -EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309 (510)
Q Consensus 261 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (510)
++++.+++++.+..++ +..+|+....++...|+++++++.++++++.+
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 4455555555555444 55555555555555555555666555555543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-06 Score=79.51 Aligned_cols=359 Identities=14% Similarity=0.123 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCc-------ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDI-------KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTC 143 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 143 (510)
...|..+.+.|.+..+.+-|.-.+-.|....+. ..+.+.-..+.......|.+++|+.++++-...
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------- 829 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------- 829 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 344555555555555555554444333321100 001112222223334455555555555553321
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHH----------hCCC-------
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELK----------KNTS------- 206 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~------- 206 (510)
..|=..|-..|.+++|.++-+.=.+.. =..||.....-+-..++.+.|++.|++.. ...+
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 222233444555555555543322111 12234444444444555555555554321 1111
Q ss_pred ---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 207 ---PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 207 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
.|...|.-.....-..|+.+.|+.+|...++ |-.+++..|-.|+.++|-++-++- -|.....
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcY 971 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACY 971 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHH
Confidence 1223333333444444555555555544321 333444445555555555544332 2555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcC--CC--ChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 284 SLLSLYTNMGYKDEVLRIWKKMMSLFA--KM--NDAEYTCVISSLVKL--GEFEKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
.+.+.|-..|++.+|..+|.+...... +. ....-..+...+... .+.-.|-.+|++.- . -....+.
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVm 1043 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVM 1043 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHH
Confidence 788888888888888888877654210 00 000001111111111 22223333343311 0 1223344
Q ss_pred HHHhcCCHHHHHHHHHH--------HHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------------
Q 010458 358 AYINRNQLEMAESFYNR--------LVT--KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS-------------- 413 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~--------~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------- 413 (510)
.|-+.|.+.+|+++--+ ++. .....|+...+....-++...++++|..++-.+.+-
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRV 1123 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 56677777776654221 222 223345666666667777777777777766544331
Q ss_pred -------c---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 414 -------V---RKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 414 -------~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+ +.-.|+ ..+...+...|.++|.+..|.+-|.+.-. --..++++.+.|+
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGd 1186 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGD 1186 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCC
Confidence 0 011222 23566777888999999988877766533 2335666777777
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-05 Score=70.04 Aligned_cols=388 Identities=11% Similarity=0.037 Sum_probs=236.3
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
|.|..+|..+++-+... .++++.+.++++....|. +..|..-|..-...++++..+.+|.+-...- -+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 78999999999988666 999999999999988775 7899999999999999999999999877654 4566777777
Q ss_pred HHHHh-CCCcCcH----HHHHHHHHhC---CCCChhHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010458 183 NLYIS-NGQLDKV----PQMLQELKKN---TSPDVVTYNLWLAA---------CASQNDKETAEKAFLELKKTKIDPDWI 245 (510)
Q Consensus 183 ~~~~~-~g~~~~a----~~~~~~~~~~---~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~~~~~~~~~ 245 (510)
..-.+ .|+...+ .+.|+-.... ...+...|+..+.. +....+++...++++++....+..=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 64443 3344332 3334444443 12244556655543 334456778888898887543322122
Q ss_pred HHHH------HHHHH-------HhcCChHHHHHHHHHHHHc--cCCCChhh---------------HHHHHHHHHhcCCH
Q 010458 246 SYST------LTSLY-------IKMELPEKAATTLKEMEKR--TCRKNRVA---------------YSSLLSLYTNMGYK 295 (510)
Q Consensus 246 ~~~~------l~~~~-------~~~g~~~~A~~~~~~~~~~--~~~~~~~~---------------~~~l~~~~~~~~~~ 295 (510)
.|+- =|+.. -+...+..|.++++++... |..-...+ |..+|.-=..++--
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 2321 11111 1234566777888777643 33222111 33333322111110
Q ss_pred --------HHHHHHHHHHHH-hcCCCChhh-HHH----HHHHHHhcCCH-------HHHHHHHHHHHhccCCCCcchHHH
Q 010458 296 --------DEVLRIWKKMMS-LFAKMNDAE-YTC----VISSLVKLGEF-------EKAENIYDEWESISGTGDPRVPNI 354 (510)
Q Consensus 296 --------~~a~~~~~~~~~-~~~~~~~~~-~~~----l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 354 (510)
....-.+++... .+..|+..- +.. .-+.+...|+. +++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222221 122222211 111 11223334443 445555555443222223333333
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHH
Q 010458 355 LLAAYINR---NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNK 430 (510)
Q Consensus 355 l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 430 (510)
+...--.. .+.+....+++++...-..--..+|..+++.--+..-+..|..+|.++.+. +..+ ++.+.++++.-
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~--~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED--KRTRHHVFVAAALMEY 411 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc--cCCcchhhHHHHHHHH
Confidence 33211111 135566677777765322222356788888888888999999999999987 6666 66777888876
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCH--HHHHHHHhh
Q 010458 431 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDA--ETQKVLKIT 497 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~--~t~~~l~~~ 497 (510)
++. ++.+-|.++|+--.+.-..++.--...++-+...++ .+..+|++....++.||. ..|..++..
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 664 689999999999887777777777778888888887 899999999988777765 456666653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-06 Score=76.87 Aligned_cols=149 Identities=7% Similarity=0.024 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-CcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
.++..+-..+...++.++|+.+.+++.+.... +..+|+....++...| ++++++..++++.+..+.+..+|+....++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 34445555666778888899998888876522 3345666666666666 578888888888887777777888776666
Q ss_pred HhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc
Q 010458 220 ASQNDK--ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292 (510)
Q Consensus 220 ~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (510)
.+.|+. +++..+++++.+.. +-+..+|+...-.+.+.|+++++++.++++.+.++. +...|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 666653 67788888887765 456778888888888888899999999998888766 666777666555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-07 Score=84.71 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=159.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
-+.+.|++.+|.-.|+...+.+ +-+...|-.|.......++-..|+..+++..+..+. +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456677777777777766553 345667777777777777777777777777776544 56666777777777777777
Q ss_pred HHHHHHHHHHhcCC-----C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 298 VLRIWKKMMSLFAK-----M---NDAEYTCVISSLVKLGEFEKAENIYDEWES-ISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 298 a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
|..+++.-+...++ + +...-.. ..+..........++|-++.. .+..+|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777766443211 0 0000000 112222334444555555443 33346777777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
...|+.++...+. |..+||.|...++...+.++|+..|.++++ ++|+ +++...|.-+|...|.+++|.+.|-.+
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 8888888876433 666888888888888888888888888884 4666 446667777888888888888887765
Q ss_pred HhCCCC----------CHHHHHHHHHHHHHcCC
Q 010458 448 RNAGHV----------STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 448 ~~~~~~----------~~~~~~~l~~~~~~~g~ 470 (510)
...... +..+|.+|=.++.-.++
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 432211 23577777777666666
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-07 Score=92.57 Aligned_cols=222 Identities=13% Similarity=0.091 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-cCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
+...|-..|......++.++|.+++++.... ++.-. ...|.++++.-..-|.-+...++|+++.+- --.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3455666666666666666666666666543 11111 124555555555556556666666666553 11224466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKK 397 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~ 397 (510)
.|...|.+.+.+++|.++++.|.+.- ......|...+..+.++++-+.|..++.+.++.=++ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 66666666666666666666666432 235556666666666666666666666666654111 1122334444455566
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCC
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS---TEIYNSLLRTYAKAGK 470 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 470 (510)
|+.+++..+|+..+. ..+.....|+.+++.-.++|+.+.++.+|+++...+... ...|...+..--..|+
T Consensus 1614 GDaeRGRtlfEgll~---ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLS---AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred CCchhhHHHHHHHHh---hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 666666666666665 344455666666666666666666666666666666542 2345555555555565
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-06 Score=88.47 Aligned_cols=241 Identities=12% Similarity=0.069 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC-CC-----ChhhHHHHHHHHHhCCCHHHHHH
Q 010458 88 KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MR-----GPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
+.|.++-+.++.. |.+.-.|...|......++.++|+++++++... ++ ....|.+++..-..-|.-+...+
T Consensus 1442 esaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3444444444432 566677888888888889999999988887655 22 14677788777777788888888
Q ss_pred HHHHHHhCCCCCCc-chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 162 LMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 162 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
+|+++.+.- |+ ..|..|...|.+.+.+++|.++|+.|.+........|..++..+.+.++-+.|..++.+..+.-.
T Consensus 1519 VFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1519 VFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 999888753 33 35778888888899999999999999888657778888888888888888889888888766421
Q ss_pred C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh--hhH
Q 010458 241 D-PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEY 317 (510)
Q Consensus 241 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 317 (510)
. -........+..-.+.|+.+.+..+|+......++ -...|+..++.-.+.|+.+.+..+|+++...++.|.. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 1 12333445566667888888888899888877554 6678888888888888888899999888887766543 234
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 010458 318 TCVISSLVKLGEFEKAEN 335 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~ 335 (510)
...+..--..|+-+.++.
T Consensus 1675 KkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHhcCchhhHHH
Confidence 444444344455444333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.8e-07 Score=78.44 Aligned_cols=191 Identities=14% Similarity=0.027 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh--h
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR---VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--A 315 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 315 (510)
......+..++..+...|++++|...|+++....+. +. ..+..+..++...|++++|...++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345566777888888999999999999988876432 22 46677888888999999999999998875432121 1
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 316 EYTCVISSLVKL--------GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387 (510)
Q Consensus 316 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 387 (510)
++..+..++... |+.++|.+.++.+.+..+. +...+..+.... .... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~------~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHH------HHH--------HHH
Confidence 344444555543 6677788888887754322 222222111110 0000 000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
..+...+.+.|++.+|+..++++++..++.+.....+..+..++.+.|++++|...++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2455667888888888888888886522222345678888888888888888888888876654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-07 Score=87.41 Aligned_cols=238 Identities=16% Similarity=0.122 Sum_probs=154.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
||-...-..+...+...|-...|..+|+++ ..|..++.+|...|+..+|..+.....++ +||+..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 333344455667777778778887777763 45666777777778777777777666663 377777777777
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 263 (510)
......-+++|+++.+..... +-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 766666677777777765332 11222222334677788887777754443 23456677777777778888888
Q ss_pred HHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010458 264 ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343 (510)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
.+.|.......+. +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+..+...
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 8888777765333 55678888888888888888888888877765 334455666666677778888888877776652
Q ss_pred c-CCCCcchHHHHHHHH
Q 010458 344 S-GTGDPRVPNILLAAY 359 (510)
Q Consensus 344 ~-~~~~~~~~~~l~~~~ 359 (510)
. ...|..+...++...
T Consensus 617 ~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhcccchhhHHHHHHH
Confidence 1 112444444444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-06 Score=86.36 Aligned_cols=241 Identities=14% Similarity=0.088 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
+.+...|..|+..+...+++++|.++.+...+.. |.....|...+..+...++.+++.-+ .++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv---------------~~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL---------------NLI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh---------------hhh
Confidence 3466778999999999999999999999877764 66667777777777777776655444 344
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
+......++.....+...|.+.+ -+..++..+..+|-+.|+.+++..+|+++.+..+.|+.+.|.+...+... ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 44445555555555555666643 34457888889999999999999999999888877899999999999888 9999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
|.+++.+.... +...+++.++.+++.++....+. +...+..+.+.....-....
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~---------- 221 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTR---------- 221 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccch----------
Confidence 99888876543 55566777777777777765332 32222222222211111111
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
-..++..+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 222 -----~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 -----LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -----hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1122333344455556666666666666654422 4444555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-07 Score=85.23 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
-..+...+...|-...|..+|++. ..|..++.+|...|+..+|..+..+..++ +||...|..+++....
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 355677788889999999999775 35777899999999999999999988884 6789999999988877
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.--+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788898888775432 12222223345789999999999877654 33567888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
|.......+. +...||.+-.+|.+.++-.+|...++++.+. + .-+..+|...+....+.|.+++|.+.+.++....
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc--C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999886432 5678999999999999999999999999986 5 4456677777778899999999999999887654
Q ss_pred CC--CHHHHHHHHHHHH
Q 010458 452 HV--STEIYNSLLRTYA 466 (510)
Q Consensus 452 ~~--~~~~~~~l~~~~~ 466 (510)
.. +..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 32 4444444444433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.2e-07 Score=78.64 Aligned_cols=185 Identities=12% Similarity=-0.009 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh---hhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-h---
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS---GDYAVHLDLISKIRGLSSAENFFENLPDKMRG-P--- 140 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--- 140 (510)
+.+...+..+...+.+.|++++|...|+.+.... |.++ ..+..+..++...|++++|...++.+.+..|+ +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677788888889999999999999988764 4333 46677888889999999999999998877664 2
Q ss_pred hhHHHHHHHHHhC--------CCHHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 141 DTCSALLHSYVQN--------KKSAEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 141 ~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
.++..+..++... |++++|.+.|+.+.+.. |+.. .+..+..... ..... ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----------~~~~~-------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----------LRNRL-------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----------HHHHH-------HHH
Confidence 2455555666554 77888999998888764 4432 2222211100 00000 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKI--DPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12456678889999999999999876532 223567888999999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00014 Score=70.99 Aligned_cols=273 Identities=13% Similarity=0.104 Sum_probs=160.8
Q ss_pred CccHHHHHhhhcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHH
Q 010458 38 RDTLGRRLLSLVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLI 117 (510)
Q Consensus 38 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (510)
.+.-+..+-.....-++|..++.+-.+ |..|=+.|-..|+|++|+++-+.--+. .-..+|......+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYL 868 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHH
Confidence 333344444444444788888877655 444556677789999999887653332 3456777777778
Q ss_pred HHhcChhhHHHHHHhcccC----------C-----------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc
Q 010458 118 SKIRGLSSAENFFENLPDK----------M-----------RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL 176 (510)
Q Consensus 118 ~~~g~~~~A~~~~~~~~~~----------~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 176 (510)
-..++.+.|++.|++.... . .++..|.-....+-..|+.+.|+.+|....+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 8888899988888874321 1 1234445555555567888888888876654
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH----------hCCCCCCHHH
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK----------KTKIDPDWIS 246 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----------~~~~~~~~~~ 246 (510)
|-++++..|-.|+.++|..+-++-. |..+...+.+.|-..|++.+|..+|.+.. +++. +...
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~esg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L 1012 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEESG-----DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRL 1012 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhcc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHH
Confidence 4555666666677777766655432 55566667777777777777777766542 1221 1111
Q ss_pred HH-------------------------HHHHHHHhcCChHHHHHHHH--------HHHHc--cCCCChhhHHHHHHHHHh
Q 010458 247 YS-------------------------TLTSLYIKMELPEKAATTLK--------EMEKR--TCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 247 ~~-------------------------~l~~~~~~~g~~~~A~~~~~--------~~~~~--~~~~~~~~~~~l~~~~~~ 291 (510)
+| ..+..|-+.|.+.+|+++-- +++.. ....|+...+.-...++.
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 11 12234555666666655321 12222 233355566666667777
Q ss_pred cCCHHHHHHHHHHHHH----------hc----------------CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMS----------LF----------------AKMND----AEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~----------~~----------------~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
..++++|..++-.... .| ..|+. .....+...|.+.|.+..|-+-|.+
T Consensus 1093 ~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 7777777766544321 11 11222 2356667778888888777665544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8e-06 Score=68.84 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 010458 320 VISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK--- 396 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 396 (510)
-...|+..|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+.. +..|.+-|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 3445667777777777765521 22222223344556667777777777777642 55566656555544
Q ss_pred -cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCC---h
Q 010458 397 -KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKM---P 472 (510)
Q Consensus 397 -~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---a 472 (510)
.+.+.+|.-+|+++.+ +..|+..+.+....++...|++++|..++++.......++++...++..-...|.. .
T Consensus 185 ggek~qdAfyifeE~s~---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhc---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 3456777777777775 56777777777777777778888888888877777777777777777766666763 3
Q ss_pred HHHHHHHHh
Q 010458 473 LIIVERMQK 481 (510)
Q Consensus 473 ~~~~~~m~~ 481 (510)
.+.+.+++.
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 344444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.5e-06 Score=69.42 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 258 (510)
..+-..+...|+-+....+..+.....+.|....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4445555566666666666665554444455555556666666677777776666665443 456666666666666777
Q ss_pred ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 259 LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYD 338 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 338 (510)
+.+.|..-|.+..+..+. +...++.+.-.+.-.|+++.|..++......+. -|..+-..+..+....|+++.|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777776666666665333 555666666666666666666666666655422 244445555555666666666666554
Q ss_pred H
Q 010458 339 E 339 (510)
Q Consensus 339 ~ 339 (510)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00039 Score=68.78 Aligned_cols=426 Identities=13% Similarity=0.120 Sum_probs=239.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVREL--RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFF 130 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 130 (510)
..|.+....+.+. .||.. |..+++++ .+.|+.++|..+++.....+ +.|..+...+-..|.+.++.++|..+|
T Consensus 26 kkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 26 KKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6777777776654 23322 34444443 46788888888888776554 346777777888888889999999999
Q ss_pred HhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-CcCc---------HHHHHHH
Q 010458 131 ENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDK---------VPQMLQE 200 (510)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~---------a~~~~~~ 200 (510)
+.+....|+......+..+|.+.+++.+-.++=-++-+ .++-++..+=++++...+.- ..+. |.+.++.
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99888888877777777888888877665554444443 22334444444555554432 2222 3334444
Q ss_pred HHhCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 201 LKKNT-SP-DVVTYNLWLAACASQNDKETAEKAFLE-LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 201 ~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
+.+.. +- +..-.......+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.++...|..
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D- 258 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND- 258 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-
Confidence 44432 11 222233334445567888888888833 333333334444455677778888888888888888887544
Q ss_pred ChhhHHHHHHHHH----------------hcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH---hcCCHHHHHHHHH
Q 010458 278 NRVAYSSLLSLYT----------------NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV---KLGEFEKAENIYD 338 (510)
Q Consensus 278 ~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~ 338 (510)
| |...+..+. ..+..+...+...+..... ....|-+-+.+.. .-|+.+++.-.|-
T Consensus 259 d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 259 D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 3 333222211 1112222222222222211 1122333333333 3466666544433
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----H---HHHHHHHHHhcC-----CHHHHHHH
Q 010458 339 EWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT----T---WELLTWGYLKKG-----QMEKVLEC 406 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~~-----~~~~a~~~ 406 (510)
+ +.| +-..|..=+..|...=..+.-..++...... .++.. . +...+..-.-.| .-+....+
T Consensus 333 ~--kfg---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 333 K--KFG---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred H--HhC---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 2 122 2223344444555555556666666666543 12221 0 111111111122 12233333
Q ss_pred HHHHhh---c----cCCCCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 407 FKKAIG---S----VRKWVPDH---------RLITAAYNKLEEQGDID---GAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 407 ~~~~~~---~----~~~~~p~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
+.+... . .++.-|+. -+.+.+++.+.+.++.. +|+-+++......+.+..+--.+|+.|+-
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 322221 1 11233332 24567778888888754 66777777777777788888899999999
Q ss_pred cCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhc
Q 010458 468 AGK--MPLIIVERMQKDNVQMDAETQKVLKITS 498 (510)
Q Consensus 468 ~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~ 498 (510)
.|- .|.++|+.|.-..++-|+.-+-++-.+.
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 998 8999999998888888877766665544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-05 Score=72.66 Aligned_cols=198 Identities=16% Similarity=0.089 Sum_probs=123.0
Q ss_pred ChhhHHHHHHhcccC----CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH
Q 010458 122 GLSSAENFFENLPDK----MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 122 ~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 197 (510)
++..+...-+.++.. +|+...+...+.+......-..+-.++.+..+. --...+--....+...|++++|...
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHH
Confidence 344455555555443 234555555555444333333333333322221 1112222233344567778888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
++.+....+.|+..+......+.+.++..+|.+.++++.... |+ ....-.+..++.+.|++.+|+.+++......+.
T Consensus 329 l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 888777766677777777778888888888888888876653 33 455566777788888888888888777776544
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010458 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI 343 (510)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
|+..|..|.++|...|+..++..-..+ .+...|+++.|...+....+.
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 777888888888888877776655544 344567777777777766653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-06 Score=69.26 Aligned_cols=110 Identities=9% Similarity=-0.067 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+..+...+...|++++|...|+.+....+. +...|..+...+...|++++|...|+++... .+.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML---DASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHH
Confidence 445667777888888888888888776533 6677788888888888888888888888863 344677778888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (510)
...|++++|...|+...+..|.++..|.....+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 8888888888888888888877777666555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-06 Score=71.22 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=83.7
Q ss_pred CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHH
Q 010458 188 NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY-IKMEL--PEKAA 264 (510)
Q Consensus 188 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 264 (510)
.++.+++...++...+..+.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4455566666666666666677777777777777788888877777776654 33566666666653 56566 47777
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
+++++..+.++. +...+..+...+...|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777777555 6677777777777777888888777777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-06 Score=71.61 Aligned_cols=157 Identities=15% Similarity=0.025 Sum_probs=78.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (510)
..+-..+...|+-+.+..+........ +.|....+..+....+.|++..|...+.+.....++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 333444444455555444444433221 1133333445555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
+.+.|..-|.+..+.. ..+....+.+.-.+.-.|+.+.|..++......+.. |...-..+..+....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555554432 223344455555555555555555555555544322 44444555555555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-05 Score=77.00 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=93.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
+.+......|.+|+.+++.+++... -..-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444556667777777777766522 23345666777777777777777775431 244456677777777
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
++|.++-.+.. ++......|-+-..-+-.+|++.+|.++|-... .|+ ..|..|-+.|..+..+++..+.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 77777665543 333344445444555556666666666553322 122 2344555556555555555543
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 411 IGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 411 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
... .-..|...+..-+...|+.+.|...|-+
T Consensus 877 h~d-----~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 877 HGD-----HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred Chh-----hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 211 1123444455555555666665555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-08 Score=56.16 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 239 KIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 239 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-05 Score=74.22 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=126.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC
Q 010458 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY 294 (510)
Q Consensus 215 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (510)
.+.+......|.+|+.+++.+.+... -..-|..+...|...|+++.|.++|.+.- .++--|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34555667788888888887766532 23456777888888888888888886542 34456778888888
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (510)
|+.|.++-.+.. |.......|-.-..-+-..|++.+|+++|-.+. .|+ ..|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888888776653 233344455555566667788888887775543 344 356778888888887777665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010458 375 LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444 (510)
Q Consensus 375 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (510)
-... .-..|-..+..-+-..|+...|..-|-++-+ |.+-++.|...+.|++|.++-
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d-----------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-----------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----------HHHHHHHhhhhhhHHHHHHHH
Confidence 4322 1224555666777777888887777766542 334445555666666665443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.5e-06 Score=69.23 Aligned_cols=121 Identities=14% Similarity=0.033 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 010458 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY-LKKGQ--MEKVL 404 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~--~~~a~ 404 (510)
++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.++. +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444333 224445555555555555555555555555554322 344444444432 34444 35555
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
++++++++. .+-+..++..+...+.+.|++++|...|+++.+..++
T Consensus 131 ~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555555542 1223445555555555555555555555555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.3e-05 Score=74.87 Aligned_cols=354 Identities=12% Similarity=0.007 Sum_probs=221.6
Q ss_pred cChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHH
Q 010458 121 RGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199 (510)
Q Consensus 121 g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 199 (510)
.+...|...|-+.....++ ...|..|...|....+...|.+.|+...+.+.. +...+......|+...+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3477788877777777665 678999999999888999999999999887633 67788999999999999999999954
Q ss_pred HHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 200 ELKKNTSP--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 200 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
..-+..+. -...|....-.|.+.++...+..-|+...... +.|...|..++.+|..+|++..|.++|.+.....+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 44333222 22334445667788999999999999987765 457888999999999999999999999999875322
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHhcCCH-------HHHHHHHHHHHhcc
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA------KMNDAEYTCVISSLVKLGEF-------EKAENIYDEWESIS 344 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~ 344 (510)
+...--...-..+..|.+.++...+.......- .--..++......+...|-. +++++.|.-.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 222222233445678999999998887755311 00112222222222222222 23333333332222
Q ss_pred CCCCcchHHHHHHHHHhcCCHH------HHHHHH-HHHHhCCC--------------------CCCHHHHHHHHHHHHh-
Q 010458 345 GTGDPRVPNILLAAYINRNQLE------MAESFY-NRLVTKGI--------------------KPCYTTWELLTWGYLK- 396 (510)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~------~A~~~~-~~~~~~~~--------------------~p~~~~~~~l~~~~~~- 396 (510)
...+...|-.+..++.-.-..+ ....++ .+....+. ..+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 1122222222222211100000 000001 11111111 1123445444444333
Q ss_pred ---c----CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 397 ---K----GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 397 ---~----~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
. .+...|+..+++.++. ...+..+|+.|... ...|++.-|...|-+-....+.+..+|..+...+....
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 2334788888888863 23355566666544 66688888888888888888888888988888888888
Q ss_pred C--ChHHHHHHHHh
Q 010458 470 K--MPLIIVERMQK 481 (510)
Q Consensus 470 ~--~a~~~~~~m~~ 481 (510)
+ .|.+.|...+.
T Consensus 865 d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS 878 (1238)
T ss_pred cHHHhhHHHHhhhh
Confidence 8 67777877765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=81.68 Aligned_cols=223 Identities=15% Similarity=0.177 Sum_probs=147.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH
Q 010458 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 284 (510)
+.+...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL-------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh--------------
Confidence 347778888888888889999999988876554 333 33444444466666665555544 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 010458 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364 (510)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (510)
+.......++..+..+...+... .-+...+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|... +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22223333343333333344332 2233467777778888888888888888888766 44777788888888888 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------------ccCCCCCCHHHHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG------------------SVRKWVPDHRLITA 426 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~p~~~~~~~ 426 (510)
+++|..++.+.+.. +...+++..+.++|.++.. .. +..--+.++..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~-~~~~~~~~~~~ 228 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR-EFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh-ccchhHHHHHH
Confidence 88888888877654 2333344444444444433 20 22223445556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
+-..|...++++++..+++.+.+..+.+.....-++..|..
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 66778888999999999999999999988888999988883
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-05 Score=80.53 Aligned_cols=132 Identities=8% Similarity=0.008 Sum_probs=66.4
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
+.++..+..+..+....|++++|..+++.+.+..|+ ......++..+.+.+++++|+..+++....... +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 344555555555555555555555555555555443 344444555555555555555555555554311 223334444
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
.++.+.|++++|..+|+++....+.+..++..+..++...|+.++|...|++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555554333344555555555555555555555555543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00086 Score=67.25 Aligned_cols=306 Identities=13% Similarity=0.135 Sum_probs=199.1
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
..+...+-+++|..+|++..- +....+.|+. .-++.+.|.+.-++.. .+..|..+..+-.+.|...+|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDM---NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555666666655422 2333333333 2345555555444332 456799999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT 274 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 274 (510)
++-|-+. .|+..|..++..+.+.|.+++-.+++...++..-+|... +.|+-+|++.++..+.++++
T Consensus 1124 ieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi------- 1189 (1666)
T KOG0985|consen 1124 IESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI------- 1189 (1666)
T ss_pred HHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------
Confidence 8877654 378889999999999999999999998887776666544 46888999999887655443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHH
Q 010458 275 CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354 (510)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (510)
..|+......+..-|...+.++.|.-+|... ..|..+...+...|++..|.+.-++. .+..+|..
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~ 1254 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKE 1254 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHH
Confidence 2467777888888888888888887777643 33677777788888888887665543 25677877
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 434 (510)
+-.+|...+.+.-| +|-..++-....-..-++..|-..|-+++.+.+++..+.. -+..-..|+.+.-.|.+-
T Consensus 1255 VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL---ERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL---ERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHhc
Confidence 77777766655433 2333333344555677788888888888888888877631 122344566666666554
Q ss_pred CCHHHHHHHHHHHHh-CCCC-------CHHHHHHHHHHHHHcCC
Q 010458 435 GDIDGAEHLLVTLRN-AGHV-------STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 435 g~~~~A~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~g~ 470 (510)
+++...+.++-.-. .+++ ....|+-++..|.+-..
T Consensus 1327 -kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1327 -KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444443322 1211 23456666666665444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-06 Score=69.36 Aligned_cols=96 Identities=8% Similarity=-0.006 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 151 (510)
.+..+...+...|++++|...|+.....+ |.+...+..+..++...|++++|...|+......| ++..+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35556677777888888888888877764 66777778888888888888888888888877766 4677777778888
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 010458 152 QNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~ 170 (510)
..|++++|...|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-08 Score=54.98 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=30.9
Q ss_pred cCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010458 65 EGHTVHKYELNRIVRELRKLKRYKHALEVCEWME 98 (510)
Q Consensus 65 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 98 (510)
.|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999874
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4e-05 Score=64.77 Aligned_cols=151 Identities=12% Similarity=0.104 Sum_probs=73.7
Q ss_pred HHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CC
Q 010458 114 LDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS----NG 189 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 189 (510)
+..|+..|++++|.+..+... +......=+..+.+..+++-|...++.|.+.. +..+.+.|..++.+ .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence 344555556666655555421 23333333344455555566666666665532 44455545544443 23
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLK 268 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 268 (510)
...+|.-+|++|.++.+|+..+.+-...++...+++++|..+++...... ..+..+...++-+-...|...+ ..+.+.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 45555555555555555555555555555555555555555555554443 2234444444444444443322 233444
Q ss_pred HHHH
Q 010458 269 EMEK 272 (510)
Q Consensus 269 ~~~~ 272 (510)
++..
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 4443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-05 Score=77.67 Aligned_cols=160 Identities=10% Similarity=-0.036 Sum_probs=122.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHH
Q 010458 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 217 (510)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 217 (510)
++..+..|.....+.|++++|..+++...+.. |+ ...+..+...+.+.+++++|...+++.....+.+....+.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 47888888888889999999999999888865 54 4466778888888999999999999988887778888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+. ..|....|+..+. +...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~ 234 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNA 234 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHH
Confidence 8999999999999999988743 344778888888888999999999999988876 2334445554443 3334
Q ss_pred HHHHHHHHHHh
Q 010458 298 VLRIWKKMMSL 308 (510)
Q Consensus 298 a~~~~~~~~~~ 308 (510)
-...++.+.-.
T Consensus 235 ~~~~~~~~~~~ 245 (694)
T PRK15179 235 DLAALRRLGVE 245 (694)
T ss_pred HHHHHHHcCcc
Confidence 44455555433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.7e-05 Score=62.32 Aligned_cols=195 Identities=15% Similarity=0.105 Sum_probs=142.7
Q ss_pred HhcCChHHHHHHHHHHHHc---c-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcC
Q 010458 255 IKMELPEKAATTLKEMEKR---T-CRKNRVA-YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCVISSLVKLG 328 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 328 (510)
....+.++..+++.++... | ..++..+ |..++-+....|+.+.|...++.+.... |.. .+-..-..-+-..|
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhh
Confidence 3456788999999888754 4 4445443 5556667778899999999999988874 333 22222222345679
Q ss_pred CHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010458 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFK 408 (510)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 408 (510)
++++|+++++.+.+.. +.|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-+++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999999999766 335666666666667788888888888888876 45589999999999999999999999999
Q ss_pred HHhhccCCCCCC-HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCHHH
Q 010458 409 KAIGSVRKWVPD-HRLITAAYNKLEEQG---DIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 409 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
+++- +.|- +..+..+...+.-.| +.+.|++.|.+..+..+.+...
T Consensus 179 E~ll----~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 179 ELLL----IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 9984 3554 445566666655544 5678899999999887755433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-05 Score=64.32 Aligned_cols=164 Identities=15% Similarity=0.037 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 010458 110 YAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188 (510)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 188 (510)
|..++-+....|+.+.|..+++.+....|. ..+-..-.-.+-..|++++|.++|+.+.+.+ +.|..++.--+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 444455555666777777777666655443 1111111122334566777777777776655 22445555445555556
Q ss_pred CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHH
Q 010458 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAAT 265 (510)
Q Consensus 189 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 265 (510)
|+.-+|++-+....+....|...|.-+...|...|+++.|.-.++++.-.. +.+...+..+...+.-.| +.+.+.+
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666677776666666666677777777777777777777777777765432 223344444544444433 4455666
Q ss_pred HHHHHHHccC
Q 010458 266 TLKEMEKRTC 275 (510)
Q Consensus 266 ~~~~~~~~~~ 275 (510)
.|.+..+...
T Consensus 213 yy~~alkl~~ 222 (289)
T KOG3060|consen 213 YYERALKLNP 222 (289)
T ss_pred HHHHHHHhCh
Confidence 7776666533
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.3e-05 Score=70.30 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=61.6
Q ss_pred HhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHH
Q 010458 119 KIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQ 196 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 196 (510)
..|++++|+..++.+....|+ +..+....+.+.+.++.++|.+.++.+.... |+ ...+..+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHH
Confidence 445555555555555555443 3344444455555555555555555555543 33 3344455555555555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
+++......+.|...|..|.++|...|+..++.....+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555555555555555555555555555554444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-06 Score=64.79 Aligned_cols=117 Identities=10% Similarity=0.038 Sum_probs=87.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC
Q 010458 58 TMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM 137 (510)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 137 (510)
.++...+.. +.+......+...+...|++++|.+.|+.+...+ |.++..+..+...+...|++++|...++......
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445544432 2344556677777888888888988888887764 6677888888888888888888888888887766
Q ss_pred C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH
Q 010458 138 R-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN 179 (510)
Q Consensus 138 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 179 (510)
| ++..+..+...+...|++++|...|+...+.. |+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 5 46777778888888888888888888888765 5555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=63.44 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+......+...+...|++++|.+.++.+...+ +.+...+..+..++.+.|++++|...+++..+.++. +...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 44444445555555555555555555554433 234455555555555555555555555555554322 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~ 307 (510)
.+...|++++|...|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.2e-05 Score=57.77 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIK--PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
++..++..+.+.|++++|...|+.+.+.... .....+..+...+.+.|+++.|...|+.+....++.+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666677777777777776654221 11234555666677777777777777776653111111244566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
.++.+.|+.++|...++++.+..|.+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6777777777777777777776665544443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=60.89 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=49.6
Q ss_pred ccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHHHHHhCCCH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKS 156 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 156 (510)
.++...+...++.+.+.. |.+ ......+...+...|++++|...|+.+....|++ .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555554432 222 1222233344455555555555555555443332 2233344455555555
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHH
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 199 (510)
++|+..++...... ..+..+......+.+.|+.++|...|+
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555554422211 122233344444445555555554444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.3e-05 Score=69.92 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
-.+|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++++..+..+.+..........+.+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 3456666777888888999998888764 33 4556777777777778888888888776666777777777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 223 NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 223 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
++++.|..+.+++.+.. +.+-.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888877653 33455788888888888888888888776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00019 Score=57.60 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred hcCCHHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 010458 326 KLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY--TTWELLTWGYLKKGQME 401 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~ 401 (510)
..++...+...++.+.+...... ....-.+...+...|++++|...|+.+......|+. .....+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36666777666777665432210 112233445666777777777777777765432221 23334566667777777
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
+|+..++.... -......+....+.+.+.|++++|...|+..
T Consensus 103 ~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777765432 2234445666677777777777777777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=67.27 Aligned_cols=121 Identities=18% Similarity=0.138 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 398 (510)
.++..+...++++.|.++|+++.+.. | .....++..+...++-.+|.+++++.++..+. +...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 33444444455555555555555432 2 23334555555555555555555555544221 3444444455555566
Q ss_pred CHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
+++.|+.+.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666532 333 3356666666666666666665555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0035 Score=54.98 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=104.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA---YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (510)
.....+.+.|++++|.+.|+++....+.+ ... .-.++.++.+.+++++|...+++..+..+.-...-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34455566777777777777777653332 222 13455666777777777777777766533322233333333322
Q ss_pred h--c---------------CCH---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010458 326 K--L---------------GEF---EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT 385 (510)
Q Consensus 326 ~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 385 (510)
. . .|. ..|...|+.+++. -|+. .-..+|...+..+... -..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHH
Confidence 1 1 122 2344555555543 2222 1223333333333221 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
.--.+..-|.+.|.+..|+.-++.+++..++.+........++.+|.+.|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 112456678888999999999999988765666667778888899999999999988777654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.3e-05 Score=58.11 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALL 147 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~ 147 (510)
++..++..+.+.|++++|.+.|+.+.+... .+..+..+..+..++.+.|++++|.+.|+.+....|+ +.++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344444555555555555555555554320 0111234444555555555555555555555443332 23344444
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC
Q 010458 148 HSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
.++...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-06 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP 175 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 175 (510)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.002 Score=58.34 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH-------------H
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY-------------T 318 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 318 (510)
.++.-.|+.++|.++--.+.+.... +......-..++.-.++.+.+...|++.+.. .|+...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 4556677777777776666665322 2222222223334466777777777776653 3333211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHH
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT---TWELLTW 392 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~ 392 (510)
.-..-..+.|++..|.+.|.+.+... ..++...|.....+..+.|+.++|+.--++..+. |.. .|..-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHH
Confidence 11222344556666666666555322 2233333444444555556666666555555543 221 1112223
Q ss_pred HHHhcCCHHHHHHHHHHHhhc
Q 010458 393 GYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~ 413 (510)
++...++|++|.+-|+++.+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0097 Score=54.67 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESIS-GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW-ELLTWG 393 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~ 393 (510)
.|...+....+..-.+.|..+|.+..+.+ ..+++.++++++..++ .|+...|.++|+--... -||...| +-.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 35556666666677777888888877766 5577777777777665 56667777777754443 2344433 344555
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 394 YLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
+..-++-+.|..+|+..+.+ +..+ ..+|..++.--..-|+...+..+-+++.+.-|
T Consensus 476 Li~inde~naraLFetsv~r---~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 476 LIRINDEENARALFETSVER---LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH---HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 56677777777888776653 3333 55777777777777777777777777766544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.5e-05 Score=45.96 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPC 383 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 383 (510)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 173 (510)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988877
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00022 Score=52.21 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
..+...+...|++++|...++++.+.... +...+..+...+...+++++|.+.++..... .+.+..++..+...+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHHH
Confidence 34455555566666666666666554221 2344555555666666666666666666542 2223345555666666
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 010458 433 EQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~ 451 (510)
..|+++.|...+.+..+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 6666666666666655443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=45.02 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.03 Score=56.09 Aligned_cols=197 Identities=15% Similarity=0.089 Sum_probs=131.6
Q ss_pred CCccHHHHHhh---hcc--cCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHH
Q 010458 37 GRDTLGRRLLS---LVY--AKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYA 111 (510)
Q Consensus 37 ~~~~~~~~l~~---~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (510)
.|+..+..++. +.. ..++|..+++.....+.. |..+...+-..|...++.++|..+|+...... |+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHH
Confidence 45555444433 222 338899999987765544 88889999999999999999999999999875 4577777
Q ss_pred HHHHHHHHhcChhh----HHHHHHhcccCCCChhhHHHHHHHHHhCC-C---------HHHHHHHHHHHHhCC-CCCCcc
Q 010458 112 VHLDLISKIRGLSS----AENFFENLPDKMRGPDTCSALLHSYVQNK-K---------SAEAEALMEKMSECG-FLKCPL 176 (510)
Q Consensus 112 ~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~A~~~~~~~~~~~-~~p~~~ 176 (510)
.+..+|.+.+.+.+ |.++++..++ ++..+=++++...+.. . ..-|.+.++.+.+.+ ..-+..
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a 191 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPK---RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA 191 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence 78888888877664 5566665443 3444444455444321 1 134556666666654 111112
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHH-HHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQE-LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
-.......+...|++++|++++.. ..+. ..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 222333445578899999999954 3333 333566667778888999999999999999988864
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00043 Score=64.67 Aligned_cols=103 Identities=9% Similarity=-0.003 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 436 (510)
..+...|++++|+..|+++++.+.. +...|..+..+|...|++++|+..+++++.. .+.+...|..+..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCC
Confidence 3445667777777777777765433 4556666667777777777777777777653 22345566666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 437 IDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 437 ~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
+++|...|++..+.++.+......+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777777777777777665554444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00019 Score=52.53 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
..+...+...|++++|.+.++...+.... +..++..+...+...|++++|...+...
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 38 YNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333444444444444444443333211 2233333344444444444444444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00073 Score=56.06 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 430 (510)
..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.++++. .+-+...+..+..+
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 115 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 3344444444444444444444443222111 233444444445555555555555554432 11123333334444
Q ss_pred HHHcCC--------------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 431 LEEQGD--------------IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 431 ~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+...|+ +++|.+++++....++.+ |..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 444443 456666666666665544 4445554444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00031 Score=65.67 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=60.4
Q ss_pred CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 174 CPLPYNHMLNLYISNGQLDKVPQMLQELKKNT---SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL 250 (510)
Q Consensus 174 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 250 (510)
+......+++.+....+.+.+..++.+..... .--..|.+++++.|.+.|..+.++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44444445555544555555555555554431 012233345555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555544444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.019 Score=51.90 Aligned_cols=318 Identities=15% Similarity=0.091 Sum_probs=198.5
Q ss_pred HHHHHhhhcccC-CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--ccChHHHHHHHHHHHHccCcccChhhHHHHHHH-
Q 010458 41 LGRRLLSLVYAK-RSAAITMRKWKEEGHTVHKYELNRIVRELRK--LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL- 116 (510)
Q Consensus 41 ~~~~l~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 116 (510)
+.+.+.+.+-.+ ..+...|..-++. ..|..|-.++.. .|+-..|.++-.+..+. +..|......++.+
T Consensus 57 llwwlv~~iw~sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQ 128 (531)
T COG3898 57 LLWWLVRSIWESPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQ 128 (531)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHH
Confidence 344555544333 6666666664432 135555555543 57888888877765532 34455555555543
Q ss_pred -HHHhcChhhHHHHHHhcccCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCc
Q 010458 117 -ISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK 193 (510)
Q Consensus 117 -~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 193 (510)
-.-.|+++.|.+-|+.|... |.. .-...|.-..-+.|..+.|.+.-+...+.-.. =...+...+...+..|+|+.
T Consensus 129 aal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 45679999999999999864 221 12233444445788999998888887765422 35678889999999999999
Q ss_pred HHHHHHHHHhC--CCCChhH--HHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHH
Q 010458 194 VPQMLQELKKN--TSPDVVT--YNLWLAAC---ASQNDKETAEKAFLELKKTKIDPDWIS-YSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 194 a~~~~~~~~~~--~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~ 265 (510)
|+++++.-+.. ..++..- -..|+.+- .-..|...|...-.+..+ +.||... -..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 99999887665 4444322 12222221 123456666666655544 3455332 2334678899999999999
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMN-DAEYTCVISSLVKLGEFEKAENIYDEWESI 343 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 343 (510)
+++.+-+..+.|+.. .+..+.+.|+ .++.-++..... ..+|+ ..+...+..+....|++..|..--+...+.
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999998876665542 2233345554 333333333221 13444 456667777788889998887766666543
Q ss_pred cCCCCcchHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 010458 344 SGTGDPRVPNILLAAYIN-RNQLEMAESFYNRLVTK 378 (510)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 378 (510)
.|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 359 --~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 --APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred --CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5677777777765544 48999999988888764
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.4e-05 Score=54.59 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 010458 362 RNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 439 (510)
.|+++.|+.+++++.+.... |+...+-.+..++.+.|++++|+.++++ . ...|+ ......+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~----~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L----KLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H----THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h----CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 46777788888877775432 2344455577777888888888888877 2 22332 3455555777778888888
Q ss_pred HHHHHHH
Q 010458 440 AEHLLVT 446 (510)
Q Consensus 440 A~~~~~~ 446 (510)
|++++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8877765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00044 Score=59.93 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=109.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
-+.+.+++++|...|.+.++..+ -|...|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 46788999999999999987653 36777888888999999999999988888876432 44589999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHH-HcCCHH---HHHHHHHHHHhCCC-C-CHHHHHHHHHHHHHcCCChHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLE-EQGDID---GAEHLLVTLRNAGH-V-STEIYNSLLRTYAKAGKMPLIIV 476 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~---~A~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~a~~~~ 476 (510)
|++.|++++ .+.|+..+|..=+.... +.+... .+..-++.....|. + ....++ +-.........+-
T Consensus 168 A~~aykKaL----eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~----~~l~nnp~l~~~~ 239 (304)
T KOG0553|consen 168 AIEAYKKAL----ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN----GDLMNNPQLMQLA 239 (304)
T ss_pred HHHHHHhhh----ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc----cccccCHHHHHHH
Confidence 999999998 56888887755544432 222222 33333333333333 2 223333 0000111344555
Q ss_pred HHHHh------CCCCCC--HHHHHHHHhhcC
Q 010458 477 ERMQK------DNVQMD--AETQKVLKITSE 499 (510)
Q Consensus 477 ~~m~~------~~~~pd--~~t~~~l~~~~~ 499 (510)
..|.. .+-.|+ .-+...++.+.+
T Consensus 240 ~~m~~~~~~~~~~~~~~~~~~~i~~~~~a~~ 270 (304)
T KOG0553|consen 240 SQMMKDGALNGPKNGPDNKTDMIASLIGAGG 270 (304)
T ss_pred HHHhhcccccCccCCCcchhhHHHHHHhccC
Confidence 66665 234466 555666666554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00037 Score=65.21 Aligned_cols=125 Identities=11% Similarity=0.137 Sum_probs=95.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChh
Q 010458 238 TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315 (510)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (510)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=..-|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344556777778888888888888888888887765 222224456688888989888899988888888888888999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (510)
+++.+|+.+.+.|++..|.++...|.......+..++...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999998888888887776666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.025 Score=52.12 Aligned_cols=418 Identities=11% Similarity=0.091 Sum_probs=246.4
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHH
Q 010458 67 HTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146 (510)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 146 (510)
.|.|...|-.||..+..+|..++..++++++... +|.-+.+|..-+..-...+++...+.+|.+......+...|...
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lY 115 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLY 115 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHH
Confidence 4778999999999999999999999999999875 57778888888888888899999999999988777778888887
Q ss_pred HHHHHhCCCH------HHHHHHHHHHHh-CCCCCCc-chHHHHHHHHH---hCCC------cCcHHHHHHHHHhCCCCCh
Q 010458 147 LHSYVQNKKS------AEAEALMEKMSE-CGFLKCP-LPYNHMLNLYI---SNGQ------LDKVPQMLQELKKNTSPDV 209 (510)
Q Consensus 147 ~~~~~~~~~~------~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---~~g~------~~~a~~~~~~~~~~~~~~~ 209 (510)
++.-.+..+. ..-.+.|+-... .++.|-. .-|+..+..+- ..|. .+.....|.++....-.+.
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 7754443211 112233444333 4455543 34665554433 2333 3445556666654411122
Q ss_pred -hHHHHH------HHHHHh---cC----CHHHHHHHHHHHHh--CCCC----CCHHHHHH-----------HHHHHHhc-
Q 010458 210 -VTYNLW------LAACAS---QN----DKETAEKAFLELKK--TKID----PDWISYST-----------LTSLYIKM- 257 (510)
Q Consensus 210 -~~~~~l------~~~~~~---~~----~~~~a~~~~~~m~~--~~~~----~~~~~~~~-----------l~~~~~~~- 257 (510)
..|+.. ++-... .| -+-.|...+++... .|+. .+..+++. .|..-...
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 222221 111100 11 13455556655421 2221 11222221 22211111
Q ss_pred ----CCh--HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH-HHHhcCCH
Q 010458 258 ----ELP--EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS-SLVKLGEF 330 (510)
Q Consensus 258 ----g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 330 (510)
|+. ...--++++.... +.-....|----.-+...++-+.|++....... ..|. .+..+. .+...++-
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hheeHHHHHhhcccH
Confidence 111 1112233333322 122334444444444556677777766654332 1222 111111 11222222
Q ss_pred HHHHHHHHHHHh--------------ccC---------------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 010458 331 EKAENIYDEWES--------------ISG---------------TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG-I 380 (510)
Q Consensus 331 ~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 380 (510)
+.....|+...+ .+. ..-..+|...+..-.+..-++.|..+|-++.+.+ +
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 222222222110 000 1122345667777777788999999999999988 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHH
Q 010458 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI-TAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEI 457 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 457 (510)
.+++..+++++..++ .|+..-|.++|+--+.. -||...| .-.+..+...++-+.|..+|+.....-.. -..+
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~----f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK----FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 778889999998776 57888999999987753 4555544 56677788999999999999976554332 3678
Q ss_pred HHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 458 YNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 458 ~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
|..+|..-..-|+ .+..+-++|.. +.|...+..++.+-+.
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 9999999999999 66777777765 4577777766666554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0041 Score=54.53 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
++..+......+...|++++|.+.|+.+....|+. ...-.++.++.+.+++++|...+++..+....-....|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34444445555566777777777777777766542 22244556677777778887777777765422222233333
Q ss_pred HHHHHh--CC---------------C---cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010458 182 LNLYIS--NG---------------Q---LDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241 (510)
Q Consensus 182 ~~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 241 (510)
+.+.+. .+ + ..+|++.|+++. .-|-...-..+|...+..+... +
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li--------------~~yP~S~ya~~A~~rl~~l~~~-l- 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV--------------RGYPNSQYTTDATKRLVFLKDR-L- 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH--------------HHCcCChhHHHHHHHHHHHHHH-H-
Confidence 433331 10 0 011222222222 2222222333444333333211 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRT--CRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
...--.+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|.++...+
T Consensus 175 --a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 --AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0011134555666677777777777766652 1222334455666666666666666655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00032 Score=63.13 Aligned_cols=284 Identities=16% Similarity=0.075 Sum_probs=134.5
Q ss_pred HHHHHhccChHHHHHHHHHHHHccC--cccChhhHHHHHHHHHHhcChhhHHHHHHhcc-------cCCCChhhHHHHHH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYD--IKLVSGDYAVHLDLISKIRGLSSAENFFENLP-------DKMRGPDTCSALLH 148 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~l~~ 148 (510)
..-+|+.|+....+.+|+...+.|. +..-...|..+..+|...+++++|.++...=. ..--...+...|..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567888999999999998888751 11122346667777777888888888643211 11112445556666
Q ss_pred HHHhCCCHHHHHHHHHH----HHhCCCC-CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010458 149 SYVQNKKSAEAEALMEK----MSECGFL-KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~----~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (510)
.+-..|.+++|+-.-.+ ..+.|-. .....+-.+...|...|+.-... .+.+...++.=+ ..
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pee~g~f~~ev-----~~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APEEKGAFNAEV-----TS 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------ChhhcccccHHH-----HH
Confidence 77777888887655332 2333311 12334555666666555421100 000000000000 00
Q ss_pred CHHHHHHHHHH----HHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----ccCC-CChhhHHHHHHHHHhcC
Q 010458 224 DKETAEKAFLE----LKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEK----RTCR-KNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 224 ~~~~a~~~~~~----m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~ 293 (510)
.++.|.++|.+ +.+.|- -.--..|..|.+.|.-.|+++.|+..-+.-.. .|-. .....+..+.+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 12222233222 111110 00112344455555555666666554432211 1111 11234555666666666
Q ss_pred CHHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cCCCCcchHHHHHHHHHhcC
Q 010458 294 YKDEVLRIWKKMMSLFAK-----MNDAEYTCVISSLVKLGEFEKAENIYDEWESI-----SGTGDPRVPNILLAAYINRN 363 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g 363 (510)
+++.|.+.|+.-...-+. ....+..++...|.-..++++|+.++..-... ...-....+-+|..+|...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 666666666554322111 11223445555555555666666555442210 01112344555666666666
Q ss_pred CHHHHHHHHHHH
Q 010458 364 QLEMAESFYNRL 375 (510)
Q Consensus 364 ~~~~A~~~~~~~ 375 (510)
..++|+.+.+.-
T Consensus 330 ~h~kAl~fae~h 341 (639)
T KOG1130|consen 330 EHRKALYFAELH 341 (639)
T ss_pred hHHHHHHHHHHH
Confidence 666665554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00039 Score=64.93 Aligned_cols=100 Identities=10% Similarity=-0.050 Sum_probs=78.4
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKS 156 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 156 (510)
...+...|++++|++.|+++.+.. |.++..|..+..++...|++++|+..++.+....| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 455667788889999998888875 66778888888888888899999888888888776 467788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
++|+..|+...+.+ |+.......
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHH
Confidence 88888888888765 554444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=49.81 Aligned_cols=63 Identities=17% Similarity=0.067 Sum_probs=49.7
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHH
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSAL 146 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 146 (510)
.+.|++++|+++|+.+.+.. |.+...+..+..++.+.|++++|.++++.+....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 46788899999999988875 6788888888899999999999999999988887774444433
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00047 Score=50.31 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAAYINRN--------QLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
.|..|...+++.....+|+.+++.++ .|++.+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444555666666666666666666 666666666666655432 233455566666666666666666666
Q ss_pred HHHHHh
Q 010458 391 TWGYLK 396 (510)
Q Consensus 391 ~~~~~~ 396 (510)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00075 Score=53.25 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=42.8
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCc
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQL 191 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 191 (510)
+...+...|++++|.++|+.+...+| +..-|..|.-++-..|++++|+..|......++ -|+..+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 33344444555555555554444433 234444444444445555555555554444442 2444444444455555555
Q ss_pred CcHHHHHHHHHhC
Q 010458 192 DKVPQMLQELKKN 204 (510)
Q Consensus 192 ~~a~~~~~~~~~~ 204 (510)
+.|.+.|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=52.18 Aligned_cols=89 Identities=6% Similarity=-0.111 Sum_probs=39.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
..-+...|++++|.++|+.+....+. +..-|..|.-++-..|++++|+..|.......+ -+...+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 33344444444444444444444332 333444444444444444444444444444321 1233344444444444444
Q ss_pred HHHHHHHHHHH
Q 010458 331 EKAENIYDEWE 341 (510)
Q Consensus 331 ~~a~~~~~~~~ 341 (510)
+.|.+.|+..+
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00053 Score=50.05 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHccCCCChhhHHHHH
Q 010458 216 LAACASQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKME--------LPEKAATTLKEMEKRTCRKNRVAYSSLL 286 (510)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 286 (510)
|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444666666666666666665 566666666655554432 2233444555555555555555555555
Q ss_pred HHHH
Q 010458 287 SLYT 290 (510)
Q Consensus 287 ~~~~ 290 (510)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0037 Score=56.56 Aligned_cols=58 Identities=21% Similarity=0.395 Sum_probs=22.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 284 SLLSLYTNM-GYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 284 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
.+...|-.. |++++|++.|++....-...+ ...+..+...+.+.|++++|.++|+++.
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444 555555555555433210000 0123334444444455555555554444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0057 Score=55.31 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC---CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRK---WVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
+..+...+.+.|++++|.++|++....... .+.+.. .+...+-++...|+...|.+.+++.....|
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444455556666666666666655542101 111221 222333344555666666666666655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.023 Score=55.18 Aligned_cols=367 Identities=9% Similarity=0.022 Sum_probs=183.3
Q ss_pred CCCccHHHHHhhhcccC----CcHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HhccChHHHHHHHHHHHHcc
Q 010458 36 GGRDTLGRRLLSLVYAK----RSAAITMRKWKEEGHTVHKYELNRIVREL----------RKLKRYKHALEVCEWMELQY 101 (510)
Q Consensus 36 ~~~~~~~~~l~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------~~~~~~~~a~~~~~~~~~~~ 101 (510)
..|.+-.|++++...-. +.|...|-+. |..+.......|-..+ +-.|++++|.++|-++-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc---~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRC---GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhh---ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 44556667776643222 5555555443 3333332222222222 22478888888887776553
Q ss_pred CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH
Q 010458 102 DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG---PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178 (510)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 178 (510)
..+....+.|++-...++++.-.....| ...|+.+...+.....+++|.+.|..-.. -
T Consensus 765 ----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 765 ----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred ----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 5567777888888877777764433222 46788888888888888888887764322 1
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME 258 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 258 (510)
...+.++.+..++++...+...+ +.+....-.+..++.+.|.-++|.+.|-+. + .|. ..++.|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHH
Confidence 23456666666665554444433 334555566677777777777777666432 1 121 2345566666
Q ss_pred ChHHHHHHHHHHHHccCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCChhhHHHHHHHH
Q 010458 259 LPEKAATTLKEMEKRTCR-----------KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF---AKMNDAEYTCVISSL 324 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~ 324 (510)
+|.+|.++-+...-..+. .+..+ ..-|..+.+.|+.-.|-+++.+|.+.. ..|-...-...+-+.
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 666666554432211000 01111 112344556666666666666664321 222222111111111
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010458 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
.-..+..++.+-.+.....|...+... +...|-..++-++.+..-. -.....|..|..-....|..+.|+
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al 1041 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDAL 1041 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHH
Confidence 112233344444444444443322211 1223333333344333222 113344455555555666776666
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+.--...+- ..+-|...+|..+.-+-+....+...-+.|-++..
T Consensus 1042 ~Tal~L~DY-Ed~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1042 QTALILSDY-EDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHhhhccH-hhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 544333321 24556666666665555554455544444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.026 Score=51.44 Aligned_cols=272 Identities=14% Similarity=0.055 Sum_probs=151.3
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
.++.+.-++....| ..+.+..++..|+..+....+.. |.+..-|..-+..+...|++++|.--.+.
T Consensus 43 ~~~~~~Ae~~k~~g------------n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~ 108 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEG------------NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQ 108 (486)
T ss_pred chHHHHHHHHHhhc------------chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhh
Confidence 45555555555544 35677788899999999988874 66777777777777788888887766655
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHH---------------HHHhCC-CCCCcchHHHH-HHHHHhCCCcCcH
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEAEALME---------------KMSECG-FLKCPLPYNHM-LNLYISNGQLDKV 194 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~---------------~~~~~~-~~p~~~~~~~l-~~~~~~~g~~~~a 194 (510)
-.+..+. ...+...-.++...++..+|.+.++ .+.... -+|.-.+|..+ ..++...|+.++|
T Consensus 109 ~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 109 SVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred heecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 5444322 1222222223333333333333222 111111 11223344333 2345567888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------------HHHHHHHhcCChH
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS-------------TLTSLYIKMELPE 261 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------~l~~~~~~~g~~~ 261 (510)
.+.--.+++....+....-.-..++.-.++.+.+...|++.+..+ |+...-. .=.+-..+.|++.
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 887777776644454444433445555777888888888776553 3332211 1123345667777
Q ss_pred HHHHHHHHHHHc---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 262 KAATTLKEMEKR---TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-DAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 262 ~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
+|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--+..... .+. ...|..-..++...++|++|.+-+
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776654 22334445555556666667777766666555442 111 122333334445556666666666
Q ss_pred HHHHh
Q 010458 338 DEWES 342 (510)
Q Consensus 338 ~~~~~ 342 (510)
+...+
T Consensus 345 ~~a~q 349 (486)
T KOG0550|consen 345 EKAMQ 349 (486)
T ss_pred HHHHh
Confidence 66554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0015 Score=54.19 Aligned_cols=88 Identities=13% Similarity=-0.038 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCccc-ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL-VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALL 147 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 147 (510)
....+..+...+...|++++|+..|++..+...-++ ....+..+...+.+.|++++|...+++.....|+ ...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344567777788888999999999998876531112 2357778888888999999999999888877663 56666777
Q ss_pred HHHHhCCCHH
Q 010458 148 HSYVQNKKSA 157 (510)
Q Consensus 148 ~~~~~~~~~~ 157 (510)
..+...|+..
T Consensus 114 ~~~~~~g~~~ 123 (172)
T PRK02603 114 VIYHKRGEKA 123 (172)
T ss_pred HHHHHcCChH
Confidence 7777777643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=52.43 Aligned_cols=81 Identities=16% Similarity=0.039 Sum_probs=53.0
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEAL 162 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 162 (510)
.|+++.|+.+++.+.+.....++...+..+..++.+.|++++|..+++. .+.++ +......+..++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5778888888888877641111334455567788888888888888877 33333 334445557778888888888887
Q ss_pred HHH
Q 010458 163 MEK 165 (510)
Q Consensus 163 ~~~ 165 (510)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.013 Score=50.01 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=74.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK- 326 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 326 (510)
....+...|++++|.+.|+.+....+.. -....-.++.++.+.|+++.|...++......+.-....+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3445556666666666666666552221 1223444555666666666666666666554322111112222222111
Q ss_pred ------------cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 327 ------------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 327 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.+...+|...|+.+++ -|=...-..+|...+..+.+. =...--.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1112233333333332 222222333333333333221 001111245556
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 440 (510)
.+.|.+..|..-++.+++..++.+........++.++.+.|..+.+
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 6777777777777777664222222234455666666666666644
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00097 Score=60.03 Aligned_cols=131 Identities=11% Similarity=0.009 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS-NGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356666666666666777777777776432 1233344443333222 45555577777777766666777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDW---ISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776554 22222 36777777777777777777777777664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.062 Score=52.89 Aligned_cols=341 Identities=14% Similarity=0.136 Sum_probs=191.0
Q ss_pred HcCCCCCHHHHH-----HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC---hhhHHHHHHhccc
Q 010458 64 EEGHTVHKYELN-----RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENFFENLPD 135 (510)
Q Consensus 64 ~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 135 (510)
+-|++.+..-|. .+|.-+...+.+..|+++..++.... ......|......+.+..+ .+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 347888777775 56777888899999999998886432 1124566666666665532 2223333333333
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC----CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL----KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
.-.+...|..+......+|+++-|..+++.=...+.. -+..-+...+.-+...|+.+-...++-.+.... +...
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--~~s~ 580 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--NRSS 580 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHHH
Confidence 2224567788888788899999998887642221100 112223444455556666666666666555430 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--HHH----HccCCCChhhHHH
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIKMELPEKAATTLK--EME----KRTCRKNRVAYSS 284 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~----~~~~~~~~~~~~~ 284 (510)
.+....+.-.|..+|.+..+ .+- .+ +- .+.+.++-.++...|. ... ..+..|+ ...
T Consensus 581 ------l~~~l~~~p~a~~lY~~~~r~~~~----~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 581 ------LFMTLRNQPLALSLYRQFMRHQDR----AT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred ------HHHHHHhchhhhHHHHHHHHhhch----hh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 11122334455555555432 221 11 11 1222222222222221 100 0122222 223
Q ss_pred HHHHHHhcCCHH----------HHHHHHHHHHH-hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHH
Q 010458 285 LLSLYTNMGYKD----------EVLRIWKKMMS-LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN 353 (510)
Q Consensus 285 l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 353 (510)
..+.+.+..... +-+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -||-..|-
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 334444433311 11222222222 1333444556666667778899999988887766 67888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 433 (510)
.=+.+++..+++++-+++-+... .+.-|..++.+|.+.|+.++|.+++.+.-. .+ -...+|.+
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~-------ekv~ay~~ 782 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ-------EKVKAYLR 782 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH-------HHHHHHHH
Confidence 88889999999887766654433 245677788899999999999988876542 11 45677888
Q ss_pred cCCHHHHHHHHHH
Q 010458 434 QGDIDGAEHLLVT 446 (510)
Q Consensus 434 ~g~~~~A~~~~~~ 446 (510)
.|++.+|.++--+
T Consensus 783 ~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 783 VGDVKEAADLAAE 795 (829)
T ss_pred hccHHHHHHHHHH
Confidence 8888888766443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.004 Score=49.96 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=103.1
Q ss_pred CccHHHHHhhhcccC-CcHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHH
Q 010458 38 RDTLGRRLLSLVYAK-RSAAITMRKWKEE-GHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD 115 (510)
Q Consensus 38 ~~~~~~~l~~~~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (510)
....+|.-...++.. ..+.-.+--|+.+ +..-. -..+..+..+.=+++...+-..+-.. ..|+......+..
T Consensus 24 hqe~YWlfIif~Fp~iG~VaYfvav~LPEl~~~R~---a~~~~~a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~ 97 (251)
T COG4700 24 HQERYWLFIIFCFPVIGCVAYFVAVMLPELGADRH---AHTLLMALQQKLDPERHLREATEELA---IAPTVQNRYRLAN 97 (251)
T ss_pred cchHHHHHHHHHhcccchhhHHHHHhhhHhcccch---hHHHHHHHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHH
Confidence 445566666666555 3333333333322 21111 22233333444444444333322222 2355666667777
Q ss_pred HHHHhcChhhHHHHHHhcccC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhCCCcC
Q 010458 116 LISKIRGLSSAENFFENLPDK--MRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL-KCPLPYNHMLNLYISNGQLD 192 (510)
Q Consensus 116 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~ 192 (510)
.+.+.|+..+|...|++.... ..|+.....+.++....+++..|...++++.+.... .++.+.-.+.+.+...|++.
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 778888888888888776654 135667777777777778888888888777765410 13344556667777788888
Q ss_pred cHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 193 KVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 193 ~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
+|..-|+..... ..|....| ....+.+.|+.+++..
T Consensus 178 ~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~a 214 (251)
T COG4700 178 DAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHH
Confidence 888888777665 22222222 2334445565544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0019 Score=58.08 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK-LGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
|..+++..-+.+..+.|..+|.++.+. ...+..+|......-.. .++.+.|.++|+...+. +..+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444444444444445555555544422 11122223222222112 33333445555444432 2233444444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 361 NRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..|+.+.|..+|++.... + |.. ..|...+..-.+.|+.+.+.++.+++.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444433 1 111 244444444444444444444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=53.16 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
|..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..+++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444555555555555554432111 122444455555555555555555555444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00045 Score=59.86 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=83.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCC
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGD 436 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 436 (510)
-+.+.+++++|+..|.+.++..+. |.+.|..-..+|.+.|.++.|++-.+.++. +.|. ..+|..|..+|...|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHccCc
Confidence 355678888888888888887544 677778888888888888888888888874 3443 5588888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 437 IDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 437 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+++|.+.|++..+.+|.+...++.|-.+-.+.+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888888888877666666555554444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0032 Score=51.97 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKP--CYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.+..++..+...|++++|...|++.......| ...++..+...+...|++++|+..++++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555556666666666666665442222 123556666666666666666666666664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.016 Score=46.71 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHH
Q 010458 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---KPCYTTWE 388 (510)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~ 388 (510)
|+...-..+..++...|+..+|...|++...--+..|....-.+..+....++...|...++++-+.++ .|| +--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 333334445555555555555555555555332334444455555555555555555555555554321 222 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+.+.+...|.+.+|..-|+.+.+ .-|+...-......+.++|+..++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~----~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS----YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH----hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 344555555666666666665553 24454444444444555555554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0057 Score=46.54 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....++-.-+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777766655433 2244455566666777777777777666531000002222233344566
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
..|+.++|...+-..... ....|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~---~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE---TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 667777777666554432 1224544444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0001 Score=40.92 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSECGF 171 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (510)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0004 Score=46.71 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
...+...|++++|.+.|+++++. .+-+...+..+..++...|++++|...|+++.+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34455566666666666666643 1224455566666666666666666666666555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0061 Score=59.68 Aligned_cols=68 Identities=21% Similarity=0.085 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+...|..+.......|++++|...+++++.. .|+...|..+...+...|+.++|.+.+++....+|.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL----EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4456666666666678888888888888854 5677778888888888888888888888888777764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0051 Score=60.20 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
..|..+.-.+...|++++|...++++... .|+...|..+...+...|+.++|.+.+++..+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444455555555555555553 23444555555555555555555555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=40.83 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKG 379 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (510)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=58.51 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----ccCC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWES----ISGT-GDPRVPNILLAAYINRNQLEMAESFYNRLV----TKGI-KPCYT 385 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~p~~~ 385 (510)
.|..+...|.-.|+++.|+...+.-.+ .|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355555555566677766655443221 1111 122345556666666777777776666533 2221 12233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIGS---VRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (510)
+.-+|...|.-..++++|+.++.+-+.- +....-....+.+|..++...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455666666666777777766654431 00122234566667777777777777776665543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=51.16 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH-----hCCCCCCHHHHHHH
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ-----KDNVQMDAETQKVL 494 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~-----~~~~~pd~~t~~~l 494 (510)
+...++..+...|++++|..+++.+...+|.+...|..+|.+|...|+ .|.+.|+++. +.|+.|+..|-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 455666778889999999999999999999999999999999999999 8888887763 46999999886654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00021 Score=48.14 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
..+...|++++|+..|+.+.+..|+ +..+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555555555554444442 34444444455555555555555554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=47.72 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=27.0
Q ss_pred hcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
..|++++|++.|+++... .+-+..+...+..+|.+.|++++|..+++++....+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345555555555555542 2224444455555555555555555555555554444
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0092 Score=50.80 Aligned_cols=130 Identities=16% Similarity=0.070 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCCcCcHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HH
Q 010458 178 YNHMLNLYISNGQLDKVPQMLQELKKNT-SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST-----LT 251 (510)
Q Consensus 178 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-----l~ 251 (510)
.+.++..+.-.|.+.-...++.++.+.. +.++.....+++.-.+.||.+.|...|+...+..-..|..+++. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555555666666667777666664 33666666677777777777777777775543322223333322 23
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
..|.-++++..|...+.++...+.. |+...|.-.-+..-.|+...|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566677777777766665443 4444554444444566777777777777664
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0048 Score=53.99 Aligned_cols=103 Identities=12% Similarity=0.010 Sum_probs=58.3
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC-CChhhHHHHHHHHHhC---CCHHHHHHHHHHHHhCCCCCCcchHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM-RGPDTCSALLHSYVQN---KKSAEAEALMEKMSECGFLKCPLPYN 179 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~~ 179 (510)
|.|...|..+..+|...|+.+.|...|.+..+.. +++..+..+..++... ....++..+|+++...+.. |+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 5566666666666666666666666666665553 3455555555444332 2234566666666654421 444555
Q ss_pred HHHHHHHhCCCcCcHHHHHHHHHhCCCC
Q 010458 180 HMLNLYISNGQLDKVPQMLQELKKNTSP 207 (510)
Q Consensus 180 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 207 (510)
.|...+...|++.+|...++.|.+..+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 5555666666666666666666665444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0039 Score=55.10 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPC--YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
|...+..+.+.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+++..++.+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444455777777777777776532211 2355566677777777777777777777542222223455555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
++...|+.++|..+|+++.+..|.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 6777777777777777777766654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0019 Score=57.07 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=58.0
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHH
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSAL 146 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l 146 (510)
|...+..+.+.|++++|+..|+.+.+.. |.+ +..+..++..+...|++++|...|+.+....|+ +..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444444455567777777777766653 322 346666667777777777777777766655443 4455555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~ 170 (510)
...+...|+.++|..+|+.+.+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 556666677777777777666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.036 Score=47.29 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN--DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
..+-.....+...|++++|...|+.+....+... ....-.++.++.+.|+++.|...++...+..+.....-+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3444556667788999999999999987643221 23466677888899999999999999887654433333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKP-----CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
+.+......... .....+ -...+..++.-|-.+....+|...+..+.+. =...-..+...|.
T Consensus 86 g~~~~~~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~------la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 86 GLSYYKQIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR------LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHhCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 332211111110 000000 0123445555555566666666666555432 1122234677899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCC
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVS---TEIYNSLLRTYAKAGK 470 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 470 (510)
+.|.+..|..-++.+.+.-|.+ ......++.+|.+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987764 3678888999999888
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0006 Score=46.51 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCC
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDGAEHLLVTLRNAG 451 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 451 (510)
...|..+...+...|++++|+..|+++++. .+-+...+..+..++...| ++++|.+.+++..+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445555666666666666666666666642 1223445555666666666 4666666666655543
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00036 Score=47.66 Aligned_cols=64 Identities=14% Similarity=-0.068 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-ChhhHHHHHHhcccC
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-GLSSAENFFENLPDK 136 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 136 (510)
+..|..+...+...|++++|+..|+...+.+ |.++..+..+..++...| ++++|++.+++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4455666666666666666666666666654 445556666666666666 466666666655443
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=54.67 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=58.3
Q ss_pred CChhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHH
Q 010458 207 PDVVTYNLWLAACASQ-----NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----------------LPEKAAT 265 (510)
Q Consensus 207 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~ 265 (510)
.+..+|..++..+.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3667777777776543 667777778888888888888888888887765421 2344556
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
++++|...|+.||..++..+++.+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666655444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.016 Score=50.85 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHccCCCChhhH
Q 010458 206 SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRKNRVAY 282 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 282 (510)
+.|...|-.|..+|...|+++.|..-|....+.. .++...+..+..++..+. ...++..+|+++....+. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3355555555555555555555555555544432 223333444433333221 234455555555554333 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 283 SSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555555555555555555553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0076 Score=45.87 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=20.8
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHhCCCcCcHHHHHHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLKC--PLPYNHMLNLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 202 (510)
+-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444432221 1122333333444444444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.19 Score=49.26 Aligned_cols=356 Identities=9% Similarity=0.002 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCccc--------ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL--------VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
.|.+..|..+.......-.++.|...|-....-.|+.. +.+.-. ...-+--|++++|++++-++..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchh---
Confidence 68889999999988888888888888776654433321 111111 12223348999999999888766
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGF--LKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLA 217 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 217 (510)
...|..+.+.|++-...+++..--. +. ..-..+|+.+...+.....|++|.+.|..-... ...+.
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~e 830 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIE 830 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHH
Confidence 3345666777888777666543111 10 011246888899999989999999998865321 34567
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
++.+..++++-+.+-..+ +-+....-.+..++...|.-++|.+.|-+-.. | ..-+..|...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHH
Confidence 777777777766655544 33445566778888888888888877654321 1 134566677777777
Q ss_pred HHHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC---CCCcchHHH-HHHHHHhc
Q 010458 298 VLRIWKKMMSLFA-----------KMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG---TGDPRVPNI-LLAAYINR 362 (510)
Q Consensus 298 a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~-l~~~~~~~ 362 (510)
|.++-+...-..+ -.+.. ..-.|..+.+.|..-+|-+++.+|.+... .|-...-.. ++.++ -.
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-Lv 974 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LV 974 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HH
Confidence 7776554311000 00111 12234556778887777777777765322 222221111 11111 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+..++.+-.+.....|...+... +...+-..++-++.+..-. -.....|..+..--...|.++.|.+
T Consensus 975 E~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-----gAEAyHFmilAQrql~eg~v~~Al~ 1042 (1189)
T KOG2041|consen 975 ENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-----GAEAYHFMILAQRQLFEGRVKDALQ 1042 (1189)
T ss_pred HHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHhchHHHHHH
Confidence 234445555555555555433221 2334444555555554433 1234445555555667788888887
Q ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHHcC
Q 010458 443 LLVTLRNAG--HVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 443 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g 469 (510)
.--.+.... .++.++|..|.-+-+...
T Consensus 1043 Tal~L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 1043 TALILSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred HHhhhccHhhcCCHHHHHHHHHHHHhhhh
Confidence 655554332 346677776665554433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.14 Score=46.91 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.+.+..+.-+...|+...|.++-.+.. .|+...|..-+.+++..++|++-..+... + -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 345555666677788877777766654 56777888888888888888876665432 1 1346778888888
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
.+.|+..+|..+..++. + ..-+..|.++|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~~--------~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP--------D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC--------h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 88888888887777631 1 23456677888888877654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0031 Score=52.34 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=83.6
Q ss_pred HHHHHhcccCCCChhhHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHH
Q 010458 127 ENFFENLPDKMRGPDTCSALLHSYVQ-----NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201 (510)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 201 (510)
...|+.......+..+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 44555554444567777777777764 47888888889999999999999999999988764 3322 11111111
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 202 KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
-.- .-.+-+-|++++++|...|+-||..++..+++.+.+.+..
T Consensus 112 --------------F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 --------------FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred --------------hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 111 1234567899999999999999999999999999887654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.17 Score=46.99 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=27.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHH
Q 010458 431 LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERM 479 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m 479 (510)
+...|++.++.-.-.-+.+..| ++.+|..+.-.+....+ +|..++..+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3456666666655555555444 56666666555555555 566655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.085 Score=48.68 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTK---IDPDWISYSTLTSLYIK---MELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
.+...++-.|....+++...++.+.+.... +......--...-++-+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333444555777777888888777775431 11112222233444555 777888888877755555556777777
Q ss_pred HHHHHHHhc---------CCHHHHHHHHHHHHH
Q 010458 284 SLLSLYTNM---------GYKDEVLRIWKKMMS 307 (510)
Q Consensus 284 ~l~~~~~~~---------~~~~~a~~~~~~~~~ 307 (510)
.+...|-.. ...++|+..|.+.-.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 776665321 124555555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.24 Score=45.36 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI 360 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (510)
+.+..+.-+...|+...|.++-++. -.|+..-|...+.+++..++|++-.++-.. .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4444455556666666655554443 235556666667777777777665554321 223455666677777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 361 NRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 361 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777766666551 1 133455566666666665554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.25 Score=45.05 Aligned_cols=296 Identities=11% Similarity=0.034 Sum_probs=164.3
Q ss_pred hhHHHHHHHHH--hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH--HhCCCcCcHHHHHHHHHhCCCCChhHHHHHH
Q 010458 141 DTCSALLHSYV--QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY--ISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 216 (510)
Q Consensus 141 ~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 216 (510)
..|.+|-.+++ -.|+-..|.++-.+..+. +.-|......++.+- .-.|+++.|.+-|+.|......-..-...|.
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLy 161 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLY 161 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHH
Confidence 44555554443 356777777666554321 223444455555433 3467888888888888754111112222233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-CCCChh--hHHHHHHHHH---
Q 010458 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRKNRV--AYSSLLSLYT--- 290 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~--- 290 (510)
-...+.|+.+.|.++-+..-+.-. .-...+...+...+..|+++.|+++.+.-.... +.++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 333456777777777776644321 223456677778888888888888887665542 233322 1222222211
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
-.-+...|...-.+..+ ..|+.. .-.....++.+.|+..++-.+++.+.+..+.|++. .+..+.+.|+ .+.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~ 312 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TAL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHH
Confidence 12244555555544443 445442 23334456777888888888888887765555432 2223334443 333
Q ss_pred HHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 010458 370 SFYNRLVT-KGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE-QGDIDGAEHLLVT 446 (510)
Q Consensus 370 ~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 446 (510)
.-+++... ..++| +..+...+..+-...|++..|..--+.+. ...|....|..|.+.-.. .|+-.++..++.+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~----r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA----REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh----hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333222 11222 44555666677777788877777666665 346777777777766544 4888888888777
Q ss_pred HHhC
Q 010458 447 LRNA 450 (510)
Q Consensus 447 ~~~~ 450 (510)
..+.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=43.60 Aligned_cols=59 Identities=14% Similarity=-0.017 Sum_probs=40.3
Q ss_pred HHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 79 RELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
..|.+.+++++|+++++.+...+ |.++..+.....++...|++++|.+.|+...+..|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45666677777777777777664 556666666777777777777777777776666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.19 Score=46.52 Aligned_cols=36 Identities=11% Similarity=-0.048 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.+-..+.+++.++.-.|+.+.|.+..++|.+..++.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 445566777788888888888888888888776543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.22 Score=42.96 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=103.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCR--KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL- 327 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 327 (510)
+..-.+.|++++|.+.|+.+....+- -...+.-.++.++.+.++++.|+..+++.....+.-....|...|.+++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 44456778888888888888765221 123445566677777888888888888877764443334455555544421
Q ss_pred ------CCHHHHHHHH---HHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 328 ------GEFEKAENIY---DEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398 (510)
Q Consensus 328 ------~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 398 (510)
.|...+...+ +++++. -||.. |. -+.+.-+..++..+. ..=..+.+-|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-Ya---------~dA~~~i~~~~d~LA-------~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQR--YPNSR-YA---------PDAKARIVKLNDALA-------GHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHH--CCCCc-ch---------hhHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 2333333333 333322 12221 00 001111111111111 00123556788888
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
.+..|..-++++++......-....+-.+..+|...|-.++|...-+-+....+.
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 8888888888888753333334456677778888888888888876666555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0074 Score=41.56 Aligned_cols=59 Identities=20% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.|.+.+++++|.++++.++.. .+.+...+.....++.+.|++++|.+.|++..+.+|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 455566666666666666642 22344455555556666666666666666666655543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.093 Score=45.99 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=84.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC
Q 010458 57 ITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
+.+++|+.+-.++....-..-.......|++.+|...|+...... +.+......+...|...|+++.|..++..++..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 344444444333323333333445566777788888777777664 455666777777777888888888887777665
Q ss_pred CCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCCChhH
Q 010458 137 MRGPD--TCSALLHSYVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPDVVT 211 (510)
Q Consensus 137 ~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 211 (510)
..+.. ....-|..+.+.....+...+-...-.. | |...-..+...+...|+.+.|.+.+-.+.+. .-.|...
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 33211 1112233333333333333333333321 3 3334445555566666666666555554443 2234444
Q ss_pred HHHHHHHHHhcC
Q 010458 212 YNLWLAACASQN 223 (510)
Q Consensus 212 ~~~l~~~~~~~~ 223 (510)
-..++..+...|
T Consensus 275 Rk~lle~f~~~g 286 (304)
T COG3118 275 RKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhcC
Confidence 444444444444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.23 Score=42.71 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
.|+.-+.++.+...+++|..-++.+.+
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~ 97 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGN 97 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhcc
Confidence 344444555555555555544444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.12 Score=41.24 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH--
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL-- 147 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~-- 147 (510)
+...|..-++ +.+.+..++|+.-|..+.+.|.-....-............|+...|...|+++-...+.|....-+.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445555444 3455666777777777766542222222233334455566677777777776655544333332221
Q ss_pred ---HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC
Q 010458 148 ---HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204 (510)
Q Consensus 148 ---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 204 (510)
-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 234456666666555555544332222222334445555666666666666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.64 Score=46.18 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=77.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
--+.+--+.-+...|+..+|.++-.+.. -||-..|..=+.+++..+++++-.++-+... .+.-|..+.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk--------sPIGy~PFV 751 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK--------SPIGYLPFV 751 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--------CCCCchhHH
Confidence 3445556667778899999988877665 5788899999999999999988776665543 245577788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.+|.+.|+.++|.+.+.+.... .-...+|.+.|+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~ 785 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGD 785 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhcc
Confidence 9999999999999998776432 246667777777
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.48 Score=44.22 Aligned_cols=402 Identities=13% Similarity=0.065 Sum_probs=209.0
Q ss_pred HHHhccChHHHHHHHHHHHHccCcccChhhH------HHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHH--HH
Q 010458 80 ELRKLKRYKHALEVCEWMELQYDIKLVSGDY------AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS--YV 151 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~--~~ 151 (510)
.+-+++++.+|..+|.++.+.. ..++..+ +.++++|. .++.+.....+....+..| ...|..+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4457889999999999987753 2333322 23455553 3556666666666655544 3444444443 34
Q ss_pred hCCCHHHHHHHHHHHHhC--CCCCC---cc---------hHHHHHHHHHhCCCcCcHHHHHHHHHhC-CC----CChhHH
Q 010458 152 QNKKSAEAEALMEKMSEC--GFLKC---PL---------PYNHMLNLYISNGQLDKVPQMLQELKKN-TS----PDVVTY 212 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~--~~~p~---~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~----~~~~~~ 212 (510)
+.+.+++|.+.+..-.+. +-.|. .. .=+..+.++...|++.++..+++++... .+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999888776654 22221 10 0145567788899999999999998877 22 378888
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 010458 213 NLWLAACASQND---------------KETAEKAFLELKKT------KIDPDWISYSTLTSLYIKM--ELPEKAATTLKE 269 (510)
Q Consensus 213 ~~l~~~~~~~~~---------------~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 269 (510)
+.++-.+.+.-- ++.+.-+.++|... .+.|.......++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 886655544211 12222222222211 1223333333333332221 122223333444
Q ss_pred HHHccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 270 MEKRTCRKNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----NDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 270 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
-...-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+..+.-.
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l- 327 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL- 327 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 44444444432 22233333333 5666666665554432221 1145777777888888888888888776643
Q ss_pred CCCCcchHHHH-------HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHH
Q 010458 345 GTGDPRVPNIL-------LAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLT---WGYLKKGQ-MEKVLECFKK 409 (510)
Q Consensus 345 ~~~~~~~~~~l-------~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~-~~~a~~~~~~ 409 (510)
.|+...-..+ -+..+. .-+...=..+|+.....++. ....-..++ .-+-+.|. -++|+++++.
T Consensus 328 -dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 -DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred -CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4444432222 222221 11233334455555554332 111222232 33445555 7789999998
Q ss_pred HhhccCCCCC-CHHHHHHHH----HHHH---HcCCHHHHHHHHHHHHhCCCCC-----HHHHHHHHHH--HHHcCCChHH
Q 010458 410 AIGSVRKWVP-DHRLITAAY----NKLE---EQGDIDGAEHLLVTLRNAGHVS-----TEIYNSLLRT--YAKAGKMPLI 474 (510)
Q Consensus 410 ~~~~~~~~~p-~~~~~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~--~~~~g~~a~~ 474 (510)
++. +.| |...-+.+. ..|. ....+.+-..+-+-+.+.|+++ .+.-|.|.++ +...|+.-..
T Consensus 406 il~----ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 406 ILQ----FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHH----hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 885 333 333333222 1221 1223444445555556667653 3455666555 3456772222
Q ss_pred HHHHHHhCCCCCCHHHHHHH
Q 010458 475 IVERMQKDNVQMDAETQKVL 494 (510)
Q Consensus 475 ~~~~m~~~~~~pd~~t~~~l 494 (510)
++..+--..+.|++.+|..+
T Consensus 482 ~~ys~WL~~iaPS~~~~RLl 501 (549)
T PF07079_consen 482 YLYSSWLTKIAPSPQAYRLL 501 (549)
T ss_pred HHHHHHHHHhCCcHHHHHHH
Confidence 22223333578998888765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0074 Score=42.25 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PD-HRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.+++.+...|...|++++|+..|+++++...... |+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556666666777777777777766664311122 21 34566666777777777777777776543
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.14 Score=41.01 Aligned_cols=87 Identities=17% Similarity=0.102 Sum_probs=45.2
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...|++++|..+|+-+.-.++ .+..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 3445666666666665554332 23344455555555556666666665554443321 333344455555556666666
Q ss_pred HHHHHHHhh
Q 010458 404 LECFKKAIG 412 (510)
Q Consensus 404 ~~~~~~~~~ 412 (510)
...|..+.+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.3 Score=47.46 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
-++++.++|-.|+... +...++-.|++.+|.++|.+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3455666666565432 33344555666666666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=41.34 Aligned_cols=89 Identities=8% Similarity=-0.022 Sum_probs=47.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (510)
.-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+. -|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3345566666666666665554443 444455555555556666666666655544322 13333334444555556666
Q ss_pred HHHHHHHHHHh
Q 010458 332 KAENIYDEWES 342 (510)
Q Consensus 332 ~a~~~~~~~~~ 342 (510)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66665555553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.028 Score=48.67 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcc-CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQY-DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALL 147 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~ 147 (510)
.|+.-+.. .+.|++..|...|....+.. .-+..+..+..++..+...|+++.|...|..+.+..|+ ++.+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 34555666666666665542 11234455666666666666666666666666555432 45566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC
Q 010458 148 HSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0094 Score=36.12 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 422 RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
.++..+...|...|++++|.++|+++.+..|.++..|..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456778888889999999999999998888888888776653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=41.44 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----cCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKR----TCR-KN-RVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444555555555555555444332 100 11 233444444555555555555555443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.02 Score=45.90 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 213 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
..++..+...|+++.|..+.+.+.... +.+...|..+|.+|...|+...|.+.|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444555555555555555554443 2344555555555555555555555555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.14 Score=39.47 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
..++..++.++++.|+++....+++..-. +.++.. ...+. ........|+..+..+++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~-----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD-----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc-----------cCCCCCCCCCHHHHHHHH
Confidence 44566777777777777777776655432 221110 00000 111125788899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CC-CHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAG-HV-STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~ 470 (510)
.+|+..|++..|.++++.+.+.- ++ +...|..|+.-.....+
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999998886544 34 67888888887766554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.1 Score=47.75 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
.++..+..++.+.+++..|+....+.+.. -++|+.....-..+|...|+++.|+..|+++.+..|.|..+-+.|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLEL---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45677888889999999999999998873 456777888888899999999999999999999998887777777766
Q ss_pred HHHcCC---ChHHHHHHHHh
Q 010458 465 YAKAGK---MPLIIVERMQK 481 (510)
Q Consensus 465 ~~~~g~---~a~~~~~~m~~ 481 (510)
-.+..+ ..-.+|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 665554 55677777754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.062 Score=41.83 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
..+..-.....+.|++++|++.|+.+....|- ..+...++.+|.+.++++.|...+++..+.........|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33444445555666677777776666665432 44555666677777777777777777666553323334555555
Q ss_pred HHHh
Q 010458 184 LYIS 187 (510)
Q Consensus 184 ~~~~ 187 (510)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.065 Score=50.24 Aligned_cols=64 Identities=13% Similarity=-0.103 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh---hhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS---GDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
+...|+.+..+|.+.|++++|+..|+...+.+ |.+. ..|..+..+|...|++++|+..++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555555555544432 2222 1244444455555555555555444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.13 Score=44.59 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIK--PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
.|+.-+..+ +.|++..|...|...++..+. -....+-.|..++...|++++|...|..+.+.....+--+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355555443 456677777777777665321 11123344667777777777777777777765333333456667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.+..+.|+.++|...|+++.+.-|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 77777777777777777777766653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.1 Score=43.40 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=110.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA 357 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 357 (510)
+..+|..-+.--...|+.+.+.-.|+...-. +..-...|-..+.-....|+.+.|..++....+-..+..+. ...+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHH
Confidence 3456777777778888888888888876542 11122233334444444588888888877766544332222 222222
Q ss_pred HH-HhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHhhccCCCCCCHHHHHHHHH---
Q 010458 358 AY-INRNQLEMAESFYNRLVTKGIKPCYTTW-ELLTWGYLKKGQMEKVL---ECFKKAIGSVRKWVPDHRLITAAYN--- 429 (510)
Q Consensus 358 ~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~p~~~~~~~l~~--- 429 (510)
.+ -..|++..|..+++...+.- |+..-. ..-+....+.|+.+.+. +++...... .-+..+...+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~----~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG----KENNGILEKLYVKFA 447 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc----ccCcchhHHHHHHHH
Confidence 22 34678899999998888753 443321 12233345567777666 444433332 122222222221
Q ss_pred --HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 430 --KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 430 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.+.-.++.+.|..++.++.+..+.+...|..+++.....+.
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 23345788899999999988888888888888888887775
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.08 Score=50.77 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSY 150 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 150 (510)
....+.+++-+-+.|.++.|+++.+.-. .-.+...+.|+++.|.++.++.. ++..|..|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHH
Confidence 3445666666666677777666543322 22345556677777766655443 456777777777
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
...|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+...... -+|....++...|++++..+
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-----~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-----DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHcCCHHHHHH
Confidence 777777777777665443 5556666666666655555555444332 13444445555566666666
Q ss_pred HHHH
Q 010458 231 AFLE 234 (510)
Q Consensus 231 ~~~~ 234 (510)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.039 Score=51.65 Aligned_cols=67 Identities=9% Similarity=-0.095 Sum_probs=60.9
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
-|.++..++.+..+|...|++++|+..|++..+..|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788899999999999999999999999999988873 35999999999999999999999998885
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.94 Score=40.89 Aligned_cols=120 Identities=9% Similarity=0.020 Sum_probs=57.7
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHH-------HHHHhc-ChhhHHHHHHhcccC----------CCC----
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLD-------LISKIR-GLSSAENFFENLPDK----------MRG---- 139 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~g-~~~~A~~~~~~~~~~----------~~~---- 139 (510)
.+.|+.+.|..++.+...... ..++.....+.. .....+ +++.|..++++..+. .++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467888888888888776431 234443333333 333444 666665555443221 122
Q ss_pred -hhhHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhC
Q 010458 140 -PDTCSALLHSYVQNKKSAE---AEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKN 204 (510)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 204 (510)
..+...++.+|...+..+. |..+++.+.... |+ +..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2334445555555444432 333333333222 22 333333444444455555555555555554
|
It is also involved in sporulation []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.43 Score=46.46 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=80.0
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHH-----HHHHHHhCCCHHHHHHHHH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSA-----LLHSYVQNKKSAEAEALME 164 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~ 164 (510)
.+.-++++.+.+..| + -..+...++-.|++.+|.++|.+--..+.-.+.|+- +.+-+...|..++-..+..
T Consensus 619 li~EL~~~k~rge~P-~---~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 619 LISELEERKKRGETP-N---DLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHHHHHhcCCCc-h---HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 334455555554222 2 234556777888899988888875444222222221 1222333333333322222
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH---------HHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 165 KMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE---------LKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 165 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
+-.+.. .+..-=......+...|+.++|..+.-+ +-.. ...+..+...+...+.+...+..|-++|.+
T Consensus 695 KRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 695 KRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 211110 1111112233444556666666554321 1111 223444454555555555566666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
|-+ ...++......++|++|..+-+...+
T Consensus 773 ~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 773 MGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 532 12355566667777777776666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.84 Score=39.46 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=38.4
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
..-.+.|++++|.+.|+.+....|. ..+.-.++-++-+.++++.|+..+++..+.-.......|...|.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3334556666666666666555432 33444455556666666666666666655432222334444444444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.5 Score=46.11 Aligned_cols=162 Identities=17% Similarity=0.071 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcch
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND------AEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRV 351 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 351 (510)
+..++....=.||-+.+++.+.+..+.+.--.. -.|..++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555667777777776665442111111 123333333332 34567777788777754 344444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 352 PN-ILLAAYINRNQLEMAESFYNRLVTKG---IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 352 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
|. .-.+.+...|++++|++.|++..... .+.....+--+...+.-..++++|.+.|..+.+. -..+..+|..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---s~WSka~Y~Y~ 345 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---SKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc---cccHHHHHHHH
Confidence 43 23445566778888888888655311 1122334555666677778888888888888763 22334444333
Q ss_pred HH-HHHHcCCH-------HHHHHHHHHHH
Q 010458 428 YN-KLEEQGDI-------DGAEHLLVTLR 448 (510)
Q Consensus 428 ~~-~~~~~g~~-------~~A~~~~~~~~ 448 (510)
.. ++...|+. ++|.++|.++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 33455666 77777777664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=40.07 Aligned_cols=98 Identities=6% Similarity=-0.017 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010458 313 NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTW 392 (510)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 392 (510)
|..++..++.++++.|+.+....+++..- |+.++...- .+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777777765543 222221100 000 1112334566666666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+|+..|++..|+++.+...+.. +++-+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y-~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKY-PIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 6666666666666666666553 2555566666665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.61 Score=44.06 Aligned_cols=111 Identities=9% Similarity=-0.079 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 010458 364 QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 364 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
...+|.+..++..+.+.. |......+..+....++++.|..+|+++.. +.|| ..+|......+.-.|+.++|.+
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 455666777777776543 666666676666777778888888888874 3555 3455555666677788888888
Q ss_pred HHHHHHhCCCC--CHHHHHHHHHHHHHcCC-ChHHHHHHH
Q 010458 443 LLVTLRNAGHV--STEIYNSLLRTYAKAGK-MPLIIVERM 479 (510)
Q Consensus 443 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~-~a~~~~~~m 479 (510)
.+++..+..|. -..+....++.|+..+- .|+.++-+-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 88888777775 34455555667777766 677665543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.56 Score=35.74 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
+......|+-+...+++..+.+...+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444444434444444445555555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.14 Score=49.17 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=77.1
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHH
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEA 161 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 161 (510)
.-.++++++.++.+.-.-.+ ..+......++..+-+.|..+.|+++..+- ..-.+...+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTDP----------DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-H----------HHHHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCCh----------HHHhHHHHhcCCHHHHHH
Confidence 34566666655554211111 112444566666666667766666654331 123344556667666665
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKID 241 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 241 (510)
+.++. ++...|..|.....+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+.....|-
T Consensus 340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 54321 245566666666666676666666666543 244555556666666666666555554441
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
++....++.-.|+.++..+++.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444455555666666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.12 Score=45.66 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh-----CCCCCCHHHHHH
Q 010458 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK-----DNVQMDAETQKV 493 (510)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~-----~~~~pd~~t~~~ 493 (510)
..++..++..+...|+.+.+...++++....|.+...|..++.+|.+.|+ .|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44567778888899999999999999999999999999999999999999 78888887654 799999999888
Q ss_pred HHhh
Q 010458 494 LKIT 497 (510)
Q Consensus 494 l~~~ 497 (510)
+..+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 8876
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.56 Score=39.98 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
|...|-.+.-..|+..|...++.-.+.+ -+-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3444444555566677776666533211 122344555566655 35555555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.97 Score=37.83 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
||--+.+-+...|+.++|..+|+-....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.11 Score=44.96 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHH
Q 010458 208 DVVTYNLWLAACAS-----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME----------------LPEKAATT 266 (510)
Q Consensus 208 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~~ 266 (510)
|..+|-..+..+.. .+.++-....++.|.+-|+..|..+|+.|++.+-+.. +-+=++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 66667666666543 3567777778888999999999999999988764432 23457888
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCH
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (510)
+++|...|+.||..+-..+++++.+.+-.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 99999999999999988999988876653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.17 Score=46.36 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 256 (510)
++..+..++.+.+++..|++..++.+...++|+...-.-..++...|+++.|+..|+++.+.. +.|...-+.++.+..+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQK 337 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 456666677777777777777777777777777777777777777777777777777776653 2233344444444444
Q ss_pred cCChH-HHHHHHHHHHHc
Q 010458 257 MELPE-KAATTLKEMEKR 273 (510)
Q Consensus 257 ~g~~~-~A~~~~~~~~~~ 273 (510)
..... ...++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 44333 335666666543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.87 Score=36.05 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (510)
..++..+...+.......+++.+...+. .+....+.++..|++.+. ++....++. . ++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3444445555555666666665555442 345555666666654432 222233221 1 1223334455555666
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ-GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
+.++++.-++.++-. +...+..+... ++++.|.+++++ ..+++.|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666666666655421 11122222222 556666665554 124556666665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.7 Score=41.43 Aligned_cols=60 Identities=15% Similarity=0.014 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIK-PCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
-..+..++.+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.-
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345666667778888888888888764322 133356677788888888888888887764
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.77 Score=35.04 Aligned_cols=136 Identities=16% Similarity=0.156 Sum_probs=70.3
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRV---PNILLAAYINRNQLEM 367 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 367 (510)
-.|..++..++..+..... +..-++.+|.-....-+-+-..+.++.+-+ -.|... ...++.+|...|.
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc---
Confidence 3566777777776665532 334455555444444444444444444432 222222 1223333333322
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 368 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
+.......+......|+-+.-.+++....+ +-.+++.....+..+|.+.|+..++.+++.++
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k---n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKK---NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 334445556666777777777777777664 34567777777788888888888888888888
Q ss_pred HhCCCC
Q 010458 448 RNAGHV 453 (510)
Q Consensus 448 ~~~~~~ 453 (510)
.+.|..
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 777754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.1 Score=43.91 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
-+...+.-..++++|...|..+.+.
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3444455555555555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.48 Score=37.01 Aligned_cols=80 Identities=11% Similarity=0.053 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCc-ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--hhhHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDI-KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--PDTCSALLH 148 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~ 148 (510)
..+-.-.....+.|++++|.+.|+.+..+-.. +....+...++.++.+.+++++|...+++..+..|+ ..-|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33344445566889999999999999886311 224456677888999999999999999998888764 233444444
Q ss_pred HHH
Q 010458 149 SYV 151 (510)
Q Consensus 149 ~~~ 151 (510)
+++
T Consensus 91 gL~ 93 (142)
T PF13512_consen 91 GLS 93 (142)
T ss_pred HHH
Confidence 444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.47 Score=42.39 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=81.2
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV----VTYNLWLAACASQNDKET 227 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 227 (510)
..|++.+|-..++++.+. .+.|..+++..=.+|...|+.+.-...++++...-.+|. ..-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666666666666653 334556666666666666766666666666655422222 222333344455666777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC---CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR---KNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
|++.-++..+.+ +.|.-.-.++.+.+--.|++.++.+++.+-...=-. .-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 766666665543 334445555666666666666666665544332000 0011122223334455666666666654
Q ss_pred H
Q 010458 305 M 305 (510)
Q Consensus 305 ~ 305 (510)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.22 Score=37.75 Aligned_cols=90 Identities=12% Similarity=-0.047 Sum_probs=67.6
Q ss_pred HHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC-CCC----hhhHHHHHHHHHhC
Q 010458 79 RELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MRG----PDTCSALLHSYVQN 153 (510)
Q Consensus 79 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~~l~~~~~~~ 153 (510)
-++...|+.+.|++.|.+.... .|..++.|+.-.+++.-.|+.++|++-+++..+. ++. -..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3567788899999999888775 3778888988888888888888888888877665 222 23344444567778
Q ss_pred CCHHHHHHHHHHHHhCC
Q 010458 154 KKSAEAEALMEKMSECG 170 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~~ 170 (510)
|+.+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888877766
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.7 Score=37.58 Aligned_cols=204 Identities=20% Similarity=0.136 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKR-TCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555666666666655555431 122234445555555555555666666666555432222 111112222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhccC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 323 -SLVKLGEFEKAENIYDEWESISG--TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ 399 (510)
Q Consensus 323 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 399 (510)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666543111 011222222333344566666666666666654211124555666666666666
Q ss_pred HHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 400 MEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
++.+...+..+... .|+ ...+..+...+...|..+++...+.+.....+
T Consensus 218 ~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 218 YEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777766642 333 33344444444455566777766666665544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.8 Score=39.27 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=135.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--cCCCC---hhhHHHHHHHHHh
Q 010458 219 CASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR--TCRKN---RVAYSSLLSLYTN 291 (510)
Q Consensus 219 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 291 (510)
+....+.++++..+.+....- ...--.++..+..+.++.|.+++++..--.-++. ..... ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888777754321 1112345666777888888877766543222211 11111 2345555556555
Q ss_pred cCCHHHHHHHHHHHHHh-cCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----CCCcchHHHHHHHHHhc
Q 010458 292 MGYKDEVLRIWKKMMSL-FAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWESISG-----TGDPRVPNILLAAYINR 362 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 362 (510)
..++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+... .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655544332 1222 112344566777778888889888888765221 12345688888888888
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhccCC-CCCCH----HHHHHHH
Q 010458 363 NQLEMAESFYNRLVT----KGIKPCYTTW-----ELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVPDH----RLITAAY 428 (510)
Q Consensus 363 g~~~~A~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~p~~----~~~~~l~ 428 (510)
.++++|.-+..+..+ .++..-..-| -.|..++-..|....|.+.-+++.+. . ..-|. .....+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl--al~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL--ALQHGDRALQARCLLCFA 253 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH--HHHhCChHHHHHHHHHHH
Confidence 899988877766554 3332111122 23445667788888888888887653 2 12232 3345667
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 010458 429 NKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~ 448 (510)
+.|...|+.+.|..-|++..
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 77888888888887777764
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.1 Score=35.40 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444555555555555554442 24445555555555432 2223333321 1122333344444555555
Q ss_pred HHHHHHHHHH
Q 010458 330 FEKAENIYDE 339 (510)
Q Consensus 330 ~~~a~~~~~~ 339 (510)
++++..++.+
T Consensus 85 ~~~~~~l~~k 94 (140)
T smart00299 85 YEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHh
Confidence 5555555444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.86 Score=40.79 Aligned_cols=156 Identities=10% Similarity=-0.067 Sum_probs=105.4
Q ss_pred HHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHH----HHHHHHHhCC
Q 010458 115 DLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYN----HMLNLYISNG 189 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 189 (510)
..+-..|+..+|-..++++.+..| |...++-.=++|.-.|+.+.-...++++... ..||...|. .+.-++...|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 334456788888888888887766 4566666677888888888888888887653 124543332 3334455788
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD---WISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
-+++|.+.-++..+.++.|..+-.+....+-..+++.++.+++.+-...--..+ ...|=...-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 889998888888877777888888888888888888888888766432211100 11122233355667888899998
Q ss_pred HHHHH
Q 010458 267 LKEME 271 (510)
Q Consensus 267 ~~~~~ 271 (510)
|+.-.
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.05 Score=32.86 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVH 113 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 113 (510)
+|..+...|.+.|++++|.++|+.+.+.. |.++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 45666667777777777777777776654 5555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.23 E-value=2 Score=37.98 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=93.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
.....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455678888888888888765433 3555667788888888888888888877654222222222223334444444444
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHcCC
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH--VSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 470 (510)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+.+. .+...-..|+..+.-.|.
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444332 33777778888888999999999888877765544 467778888888877774
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.7 Score=41.17 Aligned_cols=143 Identities=10% Similarity=0.022 Sum_probs=85.8
Q ss_pred CcHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhc---------cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc
Q 010458 53 RSAAITMRKWKEE-GHTVH-KYELNRIVRELRKL---------KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR 121 (510)
Q Consensus 53 ~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 121 (510)
..|..+|.+.... ...|+ ...|..+...+... ....+|.+..+...+.+ +.|+.....+..+..-.+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhc
Confidence 6666677776621 22332 33444443333221 23345667777777765 667777777777777777
Q ss_pred ChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhCCCcCcHHHH
Q 010458 122 GLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 122 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~ 197 (510)
+++.|...|++....+|| ..+|......+.-.|+.++|.+.+++..+.. |... .....++.|+. ...+.|+++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 888888888888887776 4555555555666788888888888866654 3221 12222334443 345666666
Q ss_pred HHH
Q 010458 198 LQE 200 (510)
Q Consensus 198 ~~~ 200 (510)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.42 Score=36.28 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHc
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLEEQ 434 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~ 434 (510)
++...|+++.|++.|.+.+..-+ -....||.-..++--.|+.++|++-++++++.. |-+ +. ..|.--...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-Ccc-chHHHHHHHHHHHHHHHh
Confidence 44566777777777777766432 255667777777777777777777777777641 111 11 1233333456677
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 010458 435 GDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~ 453 (510)
|+-+.|..-|+..-+.|.+
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 7888888888777776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.39 Score=43.35 Aligned_cols=198 Identities=11% Similarity=-0.010 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcChhhHHHHHHh----cccCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCC---CcchH
Q 010458 110 YAVHLDLISKIRGLSSAENFFEN----LPDKM---RGPDTCSALLHSYVQNKKSAEAEALMEKMSEC-GFLK---CPLPY 178 (510)
Q Consensus 110 ~~~l~~~~~~~g~~~~A~~~~~~----~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p---~~~~~ 178 (510)
+..+..+.++.|++++++..--. ..+.. .--..|..+..++-+.-++.+++.+-..-... |..| -....
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 33445555666666655443211 11111 11344555555555555555555554433321 1111 01223
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhC----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKN----TSP--DVVTYNLWLAACASQNDKETAEKAFLELKK----TKIDPDWISYS 248 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~ 248 (510)
.++..++...+.++++++.|+...+- ..| ...+|..+...|.+..|+++|.-+..+..+ .++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666777777777766543 122 345677777778888888777766555422 22211111222
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHHc----cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 249 -----TLTSLYIKMELPEKAATTLKEMEKR----TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 249 -----~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
.|.-++...|+..+|.+.-++..+. |-.+ .......+.+.|-..|+.+.|+.-|++...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2334556677777777776665443 2111 123344566777778888887777766543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.5 Score=41.84 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=93.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
..++..-++.-+++.+ +.|+..+...++ +--......++++++++..+.+-. .+..- ......|. .
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~------~ 246 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH------F 246 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc------h
Confidence 3445555555555554 344443322222 223345678888888887764311 00000 00001111 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
++....+...|-...=..+..++-+.|+.++|++.++++.+.. ...-+..+...|+.++...+.+.++..++.+..+..
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1222222222333333457777788999999999999998641 111234577899999999999999999999986654
Q ss_pred CC-C-HHHHHHHHHHHHHcCC
Q 010458 452 HV-S-TEIYNSLLRTYAKAGK 470 (510)
Q Consensus 452 ~~-~-~~~~~~l~~~~~~~g~ 470 (510)
.+ + ...|+..+-.+...|+
T Consensus 326 lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGD 346 (539)
T ss_pred CCchHHHHHHHHHHHHHhhcc
Confidence 44 2 4557776654444443
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.6 Score=38.07 Aligned_cols=226 Identities=15% Similarity=0.059 Sum_probs=114.6
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHHH-----HHHHHHHHHhcC-ChHHHHHHHHHHHHc--------cCCCCh----
Q 010458 220 ASQNDKETAEKAFLELKKTK--IDPDWIS-----YSTLTSLYIKME-LPEKAATTLKEMEKR--------TCRKNR---- 279 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~-----~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 279 (510)
.+.|+.+.|..++.+..... ..|+..- +-.........+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777777654322 1222111 111223333445 777777666655443 112222
Q ss_pred -hhHHHHHHHHHhcCCHH---HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHH
Q 010458 280 -VAYSSLLSLYTNMGYKD---EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355 (510)
Q Consensus 280 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (510)
.++..++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+..|...- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 34566777777766644 466666666554322 34455556666767888888888888888642 2123344444
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHhCCCCCCHH-HHHHH-H---HHHHhcCC------HHHHHHHHHHHhhccCCCCCCHH
Q 010458 356 LAAYIN--RNQLEMAESFYNRLVTKGIKPCYT-TWELL-T---WGYLKKGQ------MEKVLECFKKAIGSVRKWVPDHR 422 (510)
Q Consensus 356 ~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l-~---~~~~~~~~------~~~a~~~~~~~~~~~~~~~p~~~ 422 (510)
+..+.. ......+...+..+....+.|... ....+ + ......++ .+...+++....+. .+.+.+..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~-~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS-LGKQLSAE 240 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH-hcCCCCHH
Confidence 444421 223355666666666544444443 11111 1 11112111 33444444433221 12333433
Q ss_pred HHHHHH-------HHHHHcCCHHHHHHHHHHHH
Q 010458 423 LITAAY-------NKLEEQGDIDGAEHLLVTLR 448 (510)
Q Consensus 423 ~~~~l~-------~~~~~~g~~~~A~~~~~~~~ 448 (510)
+-.++. ..+.+.+++++|.++|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333222 34567789999999888544
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=4.7 Score=41.01 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhh----HHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGD----YAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
.....-+..+.+..-++.|+.+.+.-. .++.. +...++.+.+.|++++|...+-+....- ++ ..++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~---s~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP---SEVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch---HHHH
Confidence 345566778888888888888776532 23333 3444556668899999988877654331 11 2355
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
.-|....+..+--..++.+.+.|+. +...-..|+.+|.+.++.++..++.+....... ..-....+..+.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHH
Confidence 6666777788888888999998876 667778899999999998888777765542200 1123456677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
|..+-.+... +...... .+-..+++++|++.++.+.
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 7766554422 2223333 3445678888888887764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.1 Score=36.73 Aligned_cols=206 Identities=12% Similarity=0.163 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
..|..-..+|....++++|...+.+..+..- +...|. ..+.+++|.-+.+++.+.. --...|+--...|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3455555666666777777776666543211 111111 1233455555555555431 11223445555666
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCCHHHHHHHHHHHHhcCChH
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK---TK--IDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~--~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
..|.++.|-..+++.-+. ....+++.|+++|++... .+ ...-...+....+.+.+..+++
T Consensus 103 E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 677666665555543221 123344445555444221 11 0011122344455566666666
Q ss_pred HHHHHHHHHHHc----cCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHH
Q 010458 262 KAATTLKEMEKR----TCRKNR-VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA---KMNDAEYTCVISSLVKLGEFEKA 333 (510)
Q Consensus 262 ~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 333 (510)
+|-..+.+-... .-.++. ..|...|-.+....++..|...++.--+.+- .-+..+...|+.+| ..||.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 665555443221 111111 2345555566667788888888887544321 11335666677665 56777776
Q ss_pred HHHHH
Q 010458 334 ENIYD 338 (510)
Q Consensus 334 ~~~~~ 338 (510)
.+++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 66553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=40.14 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh--CC----CcCcHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCC-
Q 010458 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYIS--NG----QLDKVPQMLQELKKNT----SPDVVTYNLWLAACASQND- 224 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~- 224 (510)
+++...+++.|.+.|+..+..+|-+....... .. ...++.++|+.|++.. .++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999988887666553333322 12 2457888999998872 2344455555443 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc-CC--hHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 225 ---KETAEKAFLELKKTKIDPDWIS-YSTLTSLYIKM-EL--PEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 225 ---~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~-g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
.+.++.+|+.+.+.|+..+... +.+-+-++... .. ...+.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3556777777777676544322 22222222221 11 346677777777777777666665554433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.85 E-value=6.5 Score=41.80 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYT--TWELLTWGY 394 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~ 394 (510)
|.+....+.....+++|--.|+..-+ ....+.+|..+|+|.+|..+..++... -+.. +-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33334444455566666555554321 123456666777777777666655432 1222 225666777
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
...+++-+|-++..+.... | ...+..|++...|++|.++.....+.+
T Consensus 1010 ~e~~kh~eAa~il~e~~sd-----~-----~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD-----P-----EEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHcccchhHHHHHHHHhcC-----H-----HHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 7778888888877777653 1 122334566667888877766655433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.5 Score=36.51 Aligned_cols=221 Identities=15% Similarity=0.074 Sum_probs=156.2
Q ss_pred cCChHHHHHHHHHHHHccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCR-KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAE 334 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 334 (510)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666654322 13567778888888999999999988887653 23334556777777788888999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 335 NIYDEWESISGTGDPRVPNILLA-AYINRNQLEMAESFYNRLVTKGI--KPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.++.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988654333 222333333 78899999999999999866322 1233444444555777899999999999999
Q ss_pred hccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh
Q 010458 412 GSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK 481 (510)
Q Consensus 412 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~ 481 (510)
.. ... ....+..+...+...++++.|...+.......+.....+..+...+...|. .+...+.+...
T Consensus 195 ~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 63 333 467888888999999999999999999998877645556666666665554 55656665544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.68 E-value=4.7 Score=39.39 Aligned_cols=366 Identities=12% Similarity=0.038 Sum_probs=216.4
Q ss_pred CcHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHH-HhcChhhHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKY-ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLIS-KIRGLSSAENFF 130 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 130 (510)
..+..++..++.. .|... -|......=.+.|..+.+..+|+..... +|.+...|...+..+. ..|+.+...+.|
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 5555666666643 44444 4677777778889999999999998874 6778877777666554 456777777888
Q ss_pred HhcccC-C---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH---hC------CCcCcHHHH
Q 010458 131 ENLPDK-M---RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI---SN------GQLDKVPQM 197 (510)
Q Consensus 131 ~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~------g~~~~a~~~ 197 (510)
+.+... | .....|...|..-..++++.....+|+++.+. | ...++....-|. +. ...+++.++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 877665 3 24678888888888899999999999999874 2 222222222221 11 122232222
Q ss_pred HHHHHh--------------------CCCCC---hhHHHHHHHH-------HHhcCCHHHHHHHHHHHHhCC-------C
Q 010458 198 LQELKK--------------------NTSPD---VVTYNLWLAA-------CASQNDKETAEKAFLELKKTK-------I 240 (510)
Q Consensus 198 ~~~~~~--------------------~~~~~---~~~~~~l~~~-------~~~~~~~~~a~~~~~~m~~~~-------~ 240 (510)
-..... ...|. ....+.+... +.......+....|+.-.... .
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~ 293 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD 293 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc
Confidence 222211 11111 0111111111 111112222222233222111 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCV 320 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (510)
.++..+|..-+..-.+.|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+-..+ +......+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~ 371 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLL 371 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHH
Confidence 234567888888888999999999988887642 1112334555555555568888888888776665333 32222222
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH--
Q 010458 321 ISS-LVKLGEFEKAENIYDEWESISGTGDP-RVPNILLAAYINRNQLEMAE---SFYNRLVTKGIKPCYTTWELLTWG-- 393 (510)
Q Consensus 321 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~~~-- 393 (510)
-.. .-..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++....+.. -+......+.--
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHH
Confidence 222 344689999999999998654 432 22223344556788888877 3443333321 122333333322
Q ss_pred ---HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC
Q 010458 394 ---YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435 (510)
Q Consensus 394 ---~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 435 (510)
+.-.++.+.|..++.++.+ .++++...|..+++.+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~---~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEAND---ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhh---cCCccHHHHHHHHHHHHhCC
Confidence 3346889999999999997 67778888888888776655
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=5.9 Score=40.49 Aligned_cols=117 Identities=7% Similarity=-0.033 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHHhc-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLF-AKMND--AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
..+.+.|...+....... ..+.. .....+.......+...++...++..... ..+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456678888888764432 22121 22333333333332245666666654422 22444455555555678888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
...+..|....-. ...-.--+.+++...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888887653211 22233345666666888888888888874
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.4 Score=38.80 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=111.3
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
+.+......++..+....+.+-.+.+-.++..-+.+...|..++..|..+ ..++-..+|+++.+..+. |...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45666667777777777777777777777777766777777888888777 556777778877776543 4444444555
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCC---C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSP---D---VVTYNLWLAACASQNDKETAEKAFLELKK-TKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~ 256 (510)
.|-+ ++.+++...|.+......| + ...|..+... -..+.+....+..++.. .|...-...+.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 7777777777777665333 1 1234444332 13556666666666532 3333334455555566777
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
..++++|++++..+.+.+-+ |...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 78888888888877766433 544444444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.65 Score=46.76 Aligned_cols=246 Identities=12% Similarity=0.028 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH----HHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML----NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 216 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 216 (510)
.....-++.+.+...++-|..+-+. .+ .+..+...++ +-+.+.|++++|...|-+-.....|. .++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHH
Confidence 3445566777777777777766443 22 2333333333 34446788888887777666554442 244
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHH
Q 010458 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (510)
.-|.....+.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5556666677777777777777753 44455677888888888877666555443 2111 111334555555666666
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLV 376 (510)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 376 (510)
+|..+-..... +......+ +-..+++++|.+.+..+.-.. -..+.+.....+. ...+++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e---~l~~l~kyGk~Ll-~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISE---LLRTLNKYGKILL-EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHH---HHHHHHHHHHHHH-hhChHHHHHHHHHHH
Confidence 66555443322 22233333 345677888888776543111 1112222222222 234455555555444
Q ss_pred hCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhh
Q 010458 377 TKGIKPCYTTWELLTW-----GYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 377 ~~~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~ 412 (510)
....++........+. ...-.+++.....+++.|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 4322223222222222 22334667777777776665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=5 Score=38.33 Aligned_cols=391 Identities=10% Similarity=0.041 Sum_probs=186.1
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-ChhhHHHHHHhcccCCCC-hhhHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-GLSSAENFFENLPDKMRG-PDTCSA 145 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~ 145 (510)
.-|+..|...+..+-+.+.+.+.-.+|..|...+ |.+++.|.....-....+ +++.|..+|.......|+ +..|..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 3488889999988877788999999999999875 667777666555544444 389999999888877765 344433
Q ss_pred HHHH---HH-h-----------CCCHHHHHHHHHH-HHhCCCCCCcch--HHH-H--HHHHHhCCCcCcH-HHHHHHHHh
Q 010458 146 LLHS---YV-Q-----------NKKSAEAEALMEK-MSECGFLKCPLP--YNH-M--LNLYISNGQLDKV-PQMLQELKK 203 (510)
Q Consensus 146 l~~~---~~-~-----------~~~~~~A~~~~~~-~~~~~~~p~~~~--~~~-l--~~~~~~~g~~~~a-~~~~~~~~~ 203 (510)
..+. |+ + .++.+ .++-.. .......++... +.. . ...........+. ..+.+.+..
T Consensus 180 yfrmEL~~~~Kl~~rr~~~g~~~~~~~--~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~ 257 (568)
T KOG2396|consen 180 YFRMELMYAEKLRNRREELGLDSSDKD--EEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQS 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 2221 11 0 01110 111000 000000111110 000 0 1111111111111 122333333
Q ss_pred CCCCChhHHHHHHH----HHHh---------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------C
Q 010458 204 NTSPDVVTYNLWLA----ACAS---------------QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM------E 258 (510)
Q Consensus 204 ~~~~~~~~~~~l~~----~~~~---------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------g 258 (510)
..+.++.++..+.. ++.+ ..+-+....+|++..+. .|+...|+..|..|... .
T Consensus 258 ~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~ 335 (568)
T KOG2396|consen 258 KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGK 335 (568)
T ss_pred cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhh
Confidence 23333333322211 1111 11234455677776543 45666676666665442 2
Q ss_pred ChHHHHHHHHHHHHc-cCCC-ChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CCHHH-H
Q 010458 259 LPEKAATTLKEMEKR-TCRK-NRVAYSSLLSLYTNMGYKDE-VLRIWKKMMSLFAKMNDAEYTCVISSLVKL-GEFEK-A 333 (510)
Q Consensus 259 ~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a 333 (510)
.+...+.+++..... +..+ ....|..+.-.++......+ |..+..+ +...+...|..-+...... .|.+- -
T Consensus 336 ~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f 411 (568)
T KOG2396|consen 336 RILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQVLIESKSDFQMLF 411 (568)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHHHHHhhcchhHHHH
Confidence 344555566655543 2222 23456666555555544333 3333322 2333444444444444322 12221 1
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCC-HHHH--HHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 010458 334 ENIYDEWESISGTGDPRVPNILLAAYINRNQ-LEMA--ESFYNRLVTKGIKPCYTTW-ELLTWGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A--~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 409 (510)
.+++......-..+....|+... .|+ ++.. ..++..+... ..|+..++ +.++.-+.+.|-..+|...+..
T Consensus 412 ~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~ 485 (568)
T KOG2396|consen 412 EELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKS 485 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHH
Confidence 22233333221222233333332 122 2111 1122222222 23444444 4556666677777788888877
Q ss_pred HhhccCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHH
Q 010458 410 AIGSVRKWVPDHRLITAAYNK---LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVER 478 (510)
Q Consensus 410 ~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~ 478 (510)
.... -+|+...|..++.. ...+| ...++..++.+...--.+++.|-..+.--...|. .+-.++.+
T Consensus 486 l~~l---pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 486 LQEL---PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHhC---CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHH
Confidence 7753 24455666666543 22333 6777777777754333677777777776667776 34444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.3 Score=34.07 Aligned_cols=69 Identities=13% Similarity=-0.015 Sum_probs=43.8
Q ss_pred HhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010458 82 RKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ 152 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (510)
.+.++.+++..+++.+.--. |..+..-..-...+...|++.+|+.+|+.+....|.......|+..|..
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45567777777777776653 4444444455566677788888888888877665554444555544443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.83 Score=39.85 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010458 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400 (510)
Q Consensus 366 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (510)
+-++.++++|...|+.||..+-..+++++.+.+..
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 34667788888888888888888888888776654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.96 E-value=10 Score=40.44 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCC
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR--VPNILLAAYINRNQ 364 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 364 (510)
..+.....+++|.-.|+..-+ ....+.+|..+|+|.+|..+..++.. ..+.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHccc
Confidence 333445556666555554321 12345566677777777777666542 11211 12456666777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.-+|-++..+.... | .-.+..+++...+++|+++.....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77777777666542 1 223445566667788877766654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.5 Score=31.70 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 388 ELLTWGYLKKGQME--KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 388 ~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
..--..|....+.+ +..+-+..+... .+.|++.+..+.+++|.+.+++..|.++|+-++..-......|..++.-
T Consensus 12 ~ary~~~F~~~~iD~we~rrglN~l~~~--DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 12 DARYEKYFNRPDIDGWELRRGLNNLFGY--DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHTTS--SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred HHHHHHHhCCccccHHHHHHHHHHHhcc--ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 33333444434333 666677777765 7889999999999999999999999999998876544333367666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.65 E-value=5.4 Score=36.21 Aligned_cols=129 Identities=13% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHccCC---CChhhHHHHHHHHHhcCCH-
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIK--ME----LPEKAATTLKEMEKRTCR---KNRVAYSSLLSLYTNMGYK- 295 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 295 (510)
++...+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|++..+- ++..++..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455566667777766665555432222211 11 234566677777665321 222333333332 22222
Q ss_pred ---HHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhcC-C--HHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 296 ---DEVLRIWKKMMSLFAKMNDA-EYTCVISSLVKLG-E--FEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 296 ---~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
+.+..+|+.+...|...+.. -+.+-+-+++... + ...+.++++.+.+.++++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34555666666555443332 1222222222211 1 235556666666666665555554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.1 Score=37.18 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.++...-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566778888888888888888888777633322 23456677777777888888777777655422222211111111
Q ss_pred -----HHHhcCCHHHHHHHHHHHH
Q 010458 323 -----SLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 323 -----~~~~~~~~~~a~~~~~~~~ 341 (510)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1234567777776665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.1 Score=39.80 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----ccCCCChhhHH
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVAYS 283 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 283 (510)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455667777777777777777777776664 45667777778888888888877777777665 26666665555
Q ss_pred HHHHH
Q 010458 284 SLLSL 288 (510)
Q Consensus 284 ~l~~~ 288 (510)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.8 Score=34.65 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRG----PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
..+...|++++|+.-++.......| ..+--.|.+.....|.++.|+..++.....+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 3445555555555555544433211 11222334444555555555555554443221 11112222344555555
Q ss_pred cCcHHHHHHHHHhC
Q 010458 191 LDKVPQMLQELKKN 204 (510)
Q Consensus 191 ~~~a~~~~~~~~~~ 204 (510)
-++|..-|++....
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.30 E-value=9.9 Score=38.26 Aligned_cols=145 Identities=19% Similarity=0.098 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHH-------ccCCCChhhHHHHHHHHHhc
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSL-----YIKMELPEKAATTLKEMEK-------RTCRKNRVAYSSLLSLYTNM 292 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 292 (510)
...+.++++...+.|. ......+..+ +....|++.|...|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3556677766666552 2222222222 3345677777777777655 33 233455556666553
Q ss_pred C-----CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH----hc
Q 010458 293 G-----YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK-LGEFEKAENIYDEWESISGTGDPRVPNILLAAYI----NR 362 (510)
Q Consensus 293 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 362 (510)
. +.+.|..++.+....|.+ +...+...+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 445566666666555422 22211111111111 13455666666666655422 11112222221 11
Q ss_pred CCHHHHHHHHHHHHhCC
Q 010458 363 NQLEMAESFYNRLVTKG 379 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~ 379 (510)
.+.+.|..++.+..+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 25566666666666655
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.20 E-value=20 Score=41.48 Aligned_cols=150 Identities=15% Similarity=0.042 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH----HhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 145 ALLHSYVQNKKSAEAEALMEKM----SECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.+..+-.+++.+.+|.-.++.- .+.. -...-|-.+...|...+++|...-+...-.. +...+. -+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccHHH-HHHHHH
Confidence 4555667889999999888873 2211 1222344555589999999998887774211 222233 344456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHH-HHHHHhcCCHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSL-LSLYTNMGYKDEVL 299 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~ 299 (510)
..|+++.|...|+.+.+.+ ++...+++-+++.....|.++......+..... ..+....++.+ +.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999998775 334677887787777778887777765555443 22233333322 33335666776666
Q ss_pred HHHH
Q 010458 300 RIWK 303 (510)
Q Consensus 300 ~~~~ 303 (510)
....
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5544
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.87 E-value=6.6 Score=34.95 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=84.7
Q ss_pred hhHHHhhhhhcccchhh-hccccccccccCCCCCccHHHHHhh--hcccC---CcHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010458 6 LGATLAAARVFSTKAAK-ITTLGLATEKKGAGGRDTLGRRLLS--LVYAK---RSAAITMRKWKEEGHTVHKYELNRIVR 79 (510)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~ 79 (510)
+++.+....+|+...+. +..+..-.. ..|..|......++. +...+ .-+..+|+.|.... ..+.++.
T Consensus 132 ~~k~Llflk~F~e~Er~KLA~~Tal~l-~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis 204 (412)
T KOG2297|consen 132 MRKFLLFLKLFEENERKKLAMLTALLL-SNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLIS 204 (412)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHH
Confidence 34555566666633322 222222222 224444444433333 11111 55556666665432 2455666
Q ss_pred HHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHH
Q 010458 80 ELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEA 159 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (510)
++.+.+--+.-.++ +||+-.+-......+...|--+ -.++.+.-...+.-...-..|..-..+...+++.
T Consensus 205 ~Lrkg~md~rLmef---------fPpnkrs~E~Fak~Ft~agL~e-lvey~~~q~~~~a~kElq~~L~~q~s~e~p~~ev 274 (412)
T KOG2297|consen 205 SLRKGKMDDRLMEF---------FPPNKRSVEHFAKYFTDAGLKE-LVEYHRNQQSEGARKELQKELQEQVSEEDPVKEV 274 (412)
T ss_pred HHHhcChHhHHHHh---------cCCcchhHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 65554433333333 3555555444444444433111 1111111000000112222334444445556655
Q ss_pred HHHH-HHHHhCCCCCCcc----hHHHHHHHHHhCCCcCcHHHHHH-HHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010458 160 EALM-EKMSECGFLKCPL----PYNHMLNLYISNGQLDKVPQMLQ-ELKKNTSPDVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 160 ~~~~-~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
.... ++|.+.++ |+.. .|..+|++- .|.+-.++.. +..+ ...+|.-|+.+++..|+.+..+
T Consensus 275 i~~VKee~k~~nl-Pe~eVi~ivWs~iMsav----eWnKkeelva~qalr----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 275 ILYVKEEMKRNNL-PETEVIGIVWSGIMSAV----EWNKKEELVAEQALR----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHHHhcCC-CCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH----HHHhhhHHHHHHhcCChHHHHH
Confidence 5444 44555444 4544 466555543 3332222211 1111 2456777888888888766543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.80 E-value=8.5 Score=36.09 Aligned_cols=33 Identities=9% Similarity=-0.069 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
+..+++...|.++.+..+.....|..+...+.+
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 777888888888888777655566655555544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.9 Score=32.88 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=37.0
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 140 (510)
..++++++..+++.+.--. |..+..-..-...+...|++++|.++|+.+.+.++..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 4677777777777776543 3344444444556677788888888888877765543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.54 E-value=2.6 Score=34.88 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH---
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS--- 284 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--- 284 (510)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+....--.+.......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566667777777777777777777766543332 22345566666677777777776666654311111111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 010458 285 LLS--LYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 285 l~~--~~~~~~~~~~a~~~~~~~~ 306 (510)
... .+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234567777777776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.45 E-value=7.3 Score=34.48 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH-----hCCCCCCHHHHH
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ-----KDNVQMDAETQK 492 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~-----~~~~~pd~~t~~ 492 (510)
++......|..+|.+.+|.++.++....++-+...|..|+..+...|+ .+..-+++|. +.|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 445566789999999999999999999999999999999999999999 7777777663 357777665543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.46 Score=26.39 Aligned_cols=30 Identities=7% Similarity=-0.097 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
.+..+..++...|++++|++.|++..+..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 344555556666666666666666555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.21 E-value=14 Score=37.19 Aligned_cols=180 Identities=15% Similarity=0.090 Sum_probs=96.8
Q ss_pred hhhHHHHHHhcccCCCC-hhhHHHHH--HH-HHhCCCHHHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhCC--
Q 010458 123 LSSAENFFENLPDKMRG-PDTCSALL--HS-YVQNKKSAEAEALMEKMSE-------CGFLKCPLPYNHMLNLYISNG-- 189 (510)
Q Consensus 123 ~~~A~~~~~~~~~~~~~-~~~~~~l~--~~-~~~~~~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g-- 189 (510)
...|.++++...+.+.. .......+ .+ +...++.+.|...|+...+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777777666432 22222222 22 4466788888888888766 44 3445666667776654
Q ss_pred ---CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChH
Q 010458 190 ---QLDKVPQMLQELKKNTSPDVVTYNLWLAACAS-QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI----KMELPE 261 (510)
Q Consensus 190 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~g~~~ 261 (510)
+.+.|..++.+......|+....-..+.-... ..+...|.++|...-+.|.. . .+-.+..+|. -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHH
Confidence 33447777777666655655544333322222 24567777777777766632 2 2222222222 234667
Q ss_pred HHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 010458 262 KAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA 310 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 310 (510)
.|..++.+..+.| .|...--...+..+.. ++++.+...+..+...|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777777777765 2222222222333333 566666655555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.42 Score=27.25 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
|..|...|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555555553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.71 E-value=3.4 Score=34.48 Aligned_cols=82 Identities=11% Similarity=-0.013 Sum_probs=59.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHcCC
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW-VPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~ 436 (510)
.+.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.++++.++.++++....- .+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 678888888877665545555555555554 678889999999888764444 7888999999999999999
Q ss_pred HHHHH
Q 010458 437 IDGAE 441 (510)
Q Consensus 437 ~~~A~ 441 (510)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88874
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=13 Score=35.46 Aligned_cols=128 Identities=9% Similarity=-0.156 Sum_probs=82.8
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC-CCChhhHHHHHHHHHhCCC
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK-MRGPDTCSALLHSYVQNKK 155 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 155 (510)
-|.--...|+.-.|-+-+....+. .|-+|.........+...|.++.+.+.+...... +....+...++....+.|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 344444567776665554444443 2456666666666777889999888887766544 3345667778888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC
Q 010458 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 207 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 207 (510)
++.|...-+-|....++ ++..........-..|-++++...++++....+|
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99998888888776554 4443333333334556677777777777655444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.52 Score=26.86 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKE 269 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~ 269 (510)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.21 Score=28.10 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=10.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSA 126 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A 126 (510)
|.++..|..+...+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.35 E-value=18 Score=36.77 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=15.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 010458 249 TLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
.|+..|...+++.+|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 36666777777777777666554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.32 E-value=10 Score=33.69 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----hcCCCChhhH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS-----LFAKMNDAEY 317 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 317 (510)
++.....|..+|.+.+|.++.+.....++- +...+-.++..+...||--.+.+-++.+.. .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 344556777788888888877777776433 666777778888888876666666665532 2555554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.32 E-value=13 Score=34.89 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=46.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---NDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
....+|..+.+.+.+.|+++.|...+..+...+... .......-+..+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888888888888888877643222 234444455666777888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.66 Score=25.81 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
+|..+..++...|++++|...|++..+.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34444445555555555555555544443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.14 E-value=8.5 Score=32.53 Aligned_cols=183 Identities=13% Similarity=0.030 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 258 ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
|-++-|.--|.+.....+. -+..||-+.--+...|+++.|.+.|+...+..+.-+-...|.-| ++.-.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 3344444445555543222 35567777777778888888888888877643221211222222 334467787777766
Q ss_pred HHHHhccCC-CCcchHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC
Q 010458 338 DEWESISGT-GDPRVPNILLAAYINRNQLEMAESF-YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR 415 (510)
Q Consensus 338 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 415 (510)
...-+..+. |-...|-.+.. ..-++.+|..- .++... .|..-|...|-.|.- |++. ...+++++..
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a--- 224 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKA--- 224 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHh---
Confidence 665543321 11122222221 22345555443 333332 244555544433322 2211 1223333332
Q ss_pred CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 416 KWVPD-------HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 416 ~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
+-..+ ..||..+..-+...|+.++|..+|+-....+.-+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 11111 3567778888888899999999998887765543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.3 Score=27.44 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=10.8
Q ss_pred CCChhHHHHHHHHHHhcCCHHHH
Q 010458 206 SPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
|.+..+|+.+...+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.77 E-value=7.4 Score=31.23 Aligned_cols=21 Identities=33% Similarity=0.329 Sum_probs=9.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCC
Q 010458 431 LEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~ 451 (510)
+...|++.+|..+|+++.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHhCCHHHHHHHHHHHhccC
Confidence 344445555555555544433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.64 E-value=23 Score=36.72 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=109.2
Q ss_pred HhCCCcCcHHHHHHHHHhC-CCCCh-------hHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKN-TSPDV-------VTYNLWLA-ACASQNDKETAEKAFLELKKT----KIDPDWISYSTLTS 252 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~ 252 (510)
....++++|..+..++... ..|+. ..++.+-. .....|+++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3466788888888877665 33221 12333322 234467778877777665432 22334555667777
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCChhhHHHHH-----HHHHhcCCH--HHHHHHHHHHHHhc---CC---CChhhHHH
Q 010458 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLL-----SLYTNMGYK--DEVLRIWKKMMSLF---AK---MNDAEYTC 319 (510)
Q Consensus 253 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~~ 319 (510)
+..-.|++++|..+..+..+..-.-++..+..+. ..+...|+. .+....+....... .. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888888888877766553333443333222 223445532 22222333322211 11 11123344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----ccCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWES----ISGTGDPRV--PNILLAAYINRNQLEMAESFYNRLVTKGIKP----CYTTWEL 389 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~ 389 (510)
+..++.+ .+.+..-.....+ ....|-... +..|+......|+.++|...++++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444443 3332222222221 111111111 2256677778888888888888776532222 2222222
Q ss_pred HH--HHHHhcCCHHHHHHHHHH
Q 010458 390 LT--WGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 390 l~--~~~~~~~~~~~a~~~~~~ 409 (510)
.+ ......|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 223346777776666655
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.47 E-value=5.1 Score=28.81 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
+.-++.+-++.+... .+.|++.+..+.+++|.+.+++..|.++|+-++.....+...|..++.-
T Consensus 22 D~we~rr~mN~l~~~--DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGY--DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHH
Confidence 344666667777665 7888888888888888888888888888888774433344566666543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.45 E-value=5.5 Score=35.60 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESIS---GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 391 (510)
.+...++..-....+++++...+-++.... ..|+... ...++.+ -.-+.++++.++..=+..|+-||..+++.++
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 334444444444556666666655554211 1111111 1222222 2335556666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 010458 392 WGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~ 412 (510)
..+.+.+++.+|.++...|+.
T Consensus 143 D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.18 E-value=43 Score=39.08 Aligned_cols=316 Identities=11% Similarity=0.027 Sum_probs=160.7
Q ss_pred HHHHHHHhcChhhHHHHHHhcccCCC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 010458 113 HLDLISKIRGLSSAENFFENLPDKMR----GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN 188 (510)
Q Consensus 113 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 188 (510)
+..+-.+++.+..|...+++-..... ....|-.+...|..-+++|...-+...-.. +.. ...-|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhh
Confidence 34455578888999999988422211 133444455588888998888777664111 222 33344556678
Q ss_pred CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHH
Q 010458 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTL-TSLYIKMELPEKAATTL 267 (510)
Q Consensus 189 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 267 (510)
|++..|...|+.+.+..++....++-++..-...|.++...-..+-.... ..+....++.+ ..+--+.++++......
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999999887777888888888777888888777766555433 22333333332 23334566666655554
Q ss_pred HHHHHccCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHHHhcCCC------C---hhhHHHHHHHHHhcCCHHHHH
Q 010458 268 KEMEKRTCRKNRVAYSSL--LSLYTNM--GYKDEVLRIWKKMMSLFAKM------N---DAEYTCVISSLVKLGEFEKAE 334 (510)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~~~a~ 334 (510)
. .. +..+|... +....+. .|.-.-.+.++.+.+.-+.| . ...|..++..+.-. +-.
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~ 1610 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELE 1610 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHH
Confidence 4 21 22333322 2222222 22222222333332221111 0 02233333322211 111
Q ss_pred HHHHHHHhccCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 010458 335 NIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYNR-LVTKGIKP-----CYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~ 402 (510)
...+... +..++.. -|..-+..-....+..+-+--+++ +.....+| -..+|-...+..-..|+++.
T Consensus 1611 ~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1611 NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111111 1111111 111111110001111111111111 11111111 23466667777777888888
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
|...+-++.+. . -+..+.-.+.-+...|+...|+.++++..+.+.+
T Consensus 1689 A~nall~A~e~--r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1689 AQNALLNAKES--R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHhhhhc--c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88877777764 2 3345555666778888888888888887765443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.10 E-value=9 Score=31.11 Aligned_cols=141 Identities=13% Similarity=0.030 Sum_probs=95.3
Q ss_pred cCCCCCccHHHHHhhhcccC-CcHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhH
Q 010458 33 KGAGGRDTLGRRLLSLVYAK-RSAAITMRKWKEEGHTVHKY-ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDY 110 (510)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~-~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 110 (510)
...-+.+.|...|......+ ++|..-|..+.+.|...=+. ..........+.|+...|+..|+++-....+|.-....
T Consensus 54 ~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 54 RASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred ccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence 33445566666555544333 99999999998876543222 23455667788999999999999998764232222122
Q ss_pred HH--HHHHHHHhcChhhHHHHHHhcccCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010458 111 AV--HLDLISKIRGLSSAENFFENLPDKMRG--PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK 173 (510)
Q Consensus 111 ~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 173 (510)
.. -.-.+...|.+++.....+.+...+.. ...-..|.-+-.+.|++..|..+|..+......|
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22 233456889999988888887655322 4455677778889999999999999988744333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=14 Score=33.33 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC-ChHHHHHHHHh
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK-MPLIIVERMQK 481 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~a~~~~~~m~~ 481 (510)
++..+-...+.++.+.|+ ..|...+-+..+.+. .....+.++...|. .|...+..+.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDKTLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCHhHHHHHHHHHh
Confidence 344444445555555554 233333333333221 12344555555555 55555555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=10 Score=31.56 Aligned_cols=126 Identities=12% Similarity=0.118 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCC-CC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH---
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKM-RG---PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH--- 180 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~--- 180 (510)
..|..++.... .+.. +.....+++.... .+ ...-..+...+...+++++|..-++..... |....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 34555554443 2222 3444444444442 12 122234556788899999999998877753 33344443
Q ss_pred --HHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 181 --MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 181 --l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
|.+.....|.+|+|+..++......- .......-..++...|+-++|..-|.+..+.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44667788999999998887654300 12224445678888999999999999988775
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.017 Score=46.21 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=45.2
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCH
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKS 156 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (510)
+++.+.+.+.+.....+++.+...+ ...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc-----cCHHHHHHHHHhcchH
Confidence 3455555666666666666666543 234556666666677666666666666553221 2223445555555666
Q ss_pred HHHHHHHHHH
Q 010458 157 AEAEALMEKM 166 (510)
Q Consensus 157 ~~A~~~~~~~ 166 (510)
+.|.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=18 Score=34.47 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=77.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
|.-....|+.-.|-+-+....+..+. ++.........+...|+++.+.+.+...... +.....+..+++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344567766665444444333222 3333334444556778888888887776544 444667788888888888888
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 331 EKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379 (510)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (510)
+.|...-..|....+. ++.+.....-..-..|-++++...|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888887765544 33333333333345567788888888877654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.70 E-value=11 Score=31.47 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=27.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
..++.+.+.++.|+.-..++++. .|+ ......-..+|.+..++++|+.-|+++.+.+|.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel----~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIEL----NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhc----CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 34444555555555555554432 221 122222233455555555555555555555544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.81 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+|..+...|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.61 E-value=10 Score=30.92 Aligned_cols=132 Identities=8% Similarity=0.016 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 56 AITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
.+.++.+.+.+++|+...+..+++.+.+.|++.....+++. +-++++...-..++. -.+.+..+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs---~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLS---LGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHH---hHccChHHHHHHHHHHH
Confidence 44556666778888888888888888888876665555543 212223222222222 11222333332222222
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
+ =...+..+++.+...|++-+|+++....... +...-..++.+..+.+|...-..+|+-
T Consensus 87 R--L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 87 R--LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred H--hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 0113455666777777777777776654321 222234455555555554443344433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.54 E-value=8.9 Score=30.28 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 397 KGQMEKVLECFKKAIGSVRKWVPDH---RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
.++++++..+++.+.- +.|+. .++.. ..+...|++.+|.++|+++.+.+..
T Consensus 23 ~~d~~D~e~lLdALrv----LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRV----LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHH----hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCC
Confidence 5566666666666552 23332 23332 2355666666666666666665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=16 Score=32.98 Aligned_cols=80 Identities=9% Similarity=0.034 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh----hhHHHHHHhcccCCCChhhH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL----SSAENFFENLPDKMRGPDTC 143 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~ 143 (510)
.++.......+..+...|. +++...+..+.+. .++......+.+++..|+. +++...+..+....+++.+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHH
Confidence 3455555555566655554 3333333333332 2455555555666666542 34555555543344454444
Q ss_pred HHHHHHHHh
Q 010458 144 SALLHSYVQ 152 (510)
Q Consensus 144 ~~l~~~~~~ 152 (510)
...+.++..
T Consensus 109 ~~A~~aLG~ 117 (280)
T PRK09687 109 ASAINATGH 117 (280)
T ss_pred HHHHHHHhc
Confidence 444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.23 E-value=6.9 Score=38.33 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=54.5
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.+.. -|..|+-.+...|+-+....
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR--------DLGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc--------chhhhhhhhhhcCChhHHHH
Confidence 35566666655543322 34456666666666666666666666543 23445555555666555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 231 AFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 231 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
+-....+.|. .|....+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444442 222333556666776666665544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.00 E-value=2.8 Score=37.77 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=21.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYN 373 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 373 (510)
-|.+.|.+++|++.|....... +.++.++..-..+|.+...+..|..-..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 3444455555555554443221 1144444444444444444444443333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.52 Score=26.17 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=8.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 010458 146 LLHSYVQNKKSAEAEALMEKMS 167 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~ 167 (510)
+...+...|++++|.+.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333444444444443333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.71 E-value=12 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=11.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
+.+.+++|+...+..+++.+.+.|+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.61 E-value=2.2 Score=30.56 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHh
Q 010458 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKK 203 (510)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 203 (510)
.+-++.+...++.|++....+.+++|.+.+++..|..+|+.++.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.49 E-value=3.4 Score=33.73 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC----------hhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCC-
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG----------LSSAENFFENLPDKMRG-PDTCSALLHSYVQNK- 154 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~- 154 (510)
++.|.+.++.-...+ |.+.+.++.-..++....+ +++|+.-|+......|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 344555555544443 5566655555554443322 22333333344444454 344444444443321
Q ss_pred ---C-------HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC
Q 010458 155 ---K-------SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN 204 (510)
Q Consensus 155 ---~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 204 (510)
+ +++|.+.|+...+. .|+...|+.-+.... +|-++..++.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 34444445544443 366666666555542 345555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.27 E-value=6.9 Score=38.34 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=43.0
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|....+ |..|+-.+...|+-+....+
T Consensus 649 ~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 4455555554444332 344455555555555555555555544322 23344444444544444444
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (510)
-....+.|.. |.-.-+|...|+++++.+++
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence 3333333322 12223344445555555444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.08 E-value=6 Score=33.09 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHhcCCH
Q 010458 280 VAYSSLLSLYTNMGYK 295 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~ 295 (510)
..+..|+..+.+.+++
T Consensus 179 eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 179 EILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHHHHHhcch
Confidence 3333333333333333
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.00 E-value=19 Score=32.12 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=71.5
Q ss_pred hcChhhHHHHHHhcccC---CCChhhHHHHHHHHHh-CCC-HHHHHHHHHHHH-hCCCCCCcchHHHHHHHHHhCCCcCc
Q 010458 120 IRGLSSAENFFENLPDK---MRGPDTCSALLHSYVQ-NKK-SAEAEALMEKMS-ECGFLKCPLPYNHMLNLYISNGQLDK 193 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~-~~~-~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~ 193 (510)
...+.+|+++|+..... -.|+.+...+++.... .+. ...-.++.+-+. ..+..++..+...++..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 34456677777743221 1245555556655544 221 222222223222 22345566667777777777777777
Q ss_pred HHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCCHHHHHH
Q 010458 194 VPQMLQELKKN--TSPDVVTYNLWLAACASQNDKETAEKAFLE-----LKKTKIDPDWISYST 249 (510)
Q Consensus 194 a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~~~~~~ 249 (510)
..++++..... ...|...|..+|......||..-..++.++ +++.++..+...-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~ 283 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQ 283 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHH
Confidence 77777766555 223667777777777777777666666655 234444444444333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.46 E-value=5.6 Score=33.58 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG--IKPCYTTWELLTWG 393 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~ 393 (510)
|.+..++.+.+.+...+++...+.-++.++ .|.-.-..++..||-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345556677788888888888887776543 355666778888888999999888777666542 23344566666654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.3 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 425 TAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
..+..++.+.|++++|.+.|+++.+..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3445556666666666666666665444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.27 E-value=38 Score=34.75 Aligned_cols=149 Identities=11% Similarity=0.034 Sum_probs=67.5
Q ss_pred CcHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHhccChHHHHHHHHHHHHcc-CcccChhh--HHHH-HHHHHHhcCh
Q 010458 53 RSAAITMRKWKEEGHTVHKYE-----LNRIVRELRKLKRYKHALEVCEWMELQY-DIKLVSGD--YAVH-LDLISKIRGL 123 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~~l-~~~~~~~g~~ 123 (510)
+.|...+++....-..++-.. -..++..+.+.+... |+..++...+.- ..+...+. +..+ +..+...++.
T Consensus 77 ~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~ 155 (608)
T PF10345_consen 77 DLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDY 155 (608)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccH
Confidence 677777766533222222221 124455555554444 777776655432 11112221 2222 2222233677
Q ss_pred hhHHHHHHhcccCC-----CChhhHHHHHHHHH--hCCCHHHHHHHHHHHHhCCC---------CCCcchHHHHHHHHH-
Q 010458 124 SSAENFFENLPDKM-----RGPDTCSALLHSYV--QNKKSAEAEALMEKMSECGF---------LKCPLPYNHMLNLYI- 186 (510)
Q Consensus 124 ~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~---------~p~~~~~~~l~~~~~- 186 (510)
..|.+.++.+.... +...++-.++.+.. +.+..+.+.+..+.+..... .|...+|..+++.++
T Consensus 156 ~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~ 235 (608)
T PF10345_consen 156 NAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCS 235 (608)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 77777776654431 12333333333332 34545555555555522111 223345555555544
Q ss_pred -hCCCcCcHHHHHHHHH
Q 010458 187 -SNGQLDKVPQMLQELK 202 (510)
Q Consensus 187 -~~g~~~~a~~~~~~~~ 202 (510)
..|+++.+.+.++++.
T Consensus 236 l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 236 LQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 4555556555555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.79 E-value=12 Score=33.58 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=72.3
Q ss_pred CCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010458 169 CGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKN----TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW 244 (510)
Q Consensus 169 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 244 (510)
.|.+....+...++..-....+++.+...+-+++.. ..|+... ...++.+ -.-++++++.++..=++-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 344555666666666666677788888887777655 1232222 2233333 334677888888777788999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
.++..+|+.+.+.+++.+|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988888877665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.74 E-value=6.9 Score=28.49 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444445555566666666666666666666666666655544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.27 E-value=2.2 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 422 RLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777778888888877777654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.07 E-value=5.1 Score=33.82 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=30.6
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhccc
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPD 135 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 135 (510)
+.-++.+.+.++..+++...+.-.+.. |.+......+++.++-.|++++|..-++-...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 334445555555555555555444432 44555555555555555555555554444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.77 E-value=3.7 Score=37.08 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc
Q 010458 356 LAAYINRNQLEMAESFYNRLVTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 434 (510)
..-|.++|.+++|+..|...... .| |.+++..-..+|.+...+..|..-...++.. . ..-...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--D-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--h-HHHHHHHHHHHHHHHHH
Confidence 46778888888888888877765 34 7778888888888888888777777766643 1 11123444444444556
Q ss_pred CCHHHHHHHHHHHHhCCCCCHH
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
|+..+|.+-++...+..|.+.+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHH
Confidence 7777777777777777766433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.26 E-value=2.6 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555555443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.11 E-value=28 Score=31.15 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=29.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 276 RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL-FAKMNDAEYTCVISSLVKLGEFEKAENIY 337 (510)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 337 (510)
.++..+...++..++..+++.+-.++|+..... +..-|...|..+|......||..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 334444455555555555555555555544333 23334444555555555555544443333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.98 E-value=11 Score=31.36 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPD-----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYA 466 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 466 (510)
.-+.+.|++++|..-|..++.. .++. ...|..-..++.+.+.++.|+.-..+..+.+|........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 4467899999999999999974 3332 2345555567889999999999999999999987677777777888
Q ss_pred HcCC--ChHHHHHHHHhC
Q 010458 467 KAGK--MPLIIVERMQKD 482 (510)
Q Consensus 467 ~~g~--~a~~~~~~m~~~ 482 (510)
+... .|+.=|+.+.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 7766 788878877664
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.66 E-value=2 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRNAG 451 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 451 (510)
+|..+...|...|++++|...|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555566666666666666666665443
|
... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.65 E-value=56 Score=33.50 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC-CCChhhHHHHHHHHHh--
Q 010458 215 WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTN-- 291 (510)
Q Consensus 215 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 291 (510)
....+.-.|.++.|.+++-. ..+...+..++...+..|.-.+-.+... ..+..... .|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555667888888888866 1223445555555444433222222111 22221110 1111456677777765
Q ss_pred -cCCHHHHHHHHHHHHH
Q 010458 292 -MGYKDEVLRIWKKMMS 307 (510)
Q Consensus 292 -~~~~~~a~~~~~~~~~ 307 (510)
..++.+|.+++--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4577788888776644
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.51 E-value=57 Score=33.49 Aligned_cols=423 Identities=13% Similarity=0.067 Sum_probs=210.6
Q ss_pred cHHHHHHHHHH-cCCCCCH--HHHHHHHHHHH-hccChHHHHHHHHHHHHccCcccChh-----hHHHHHHHHHHhcChh
Q 010458 54 SAAITMRKWKE-EGHTVHK--YELNRIVRELR-KLKRYKHALEVCEWMELQYDIKLVSG-----DYAVHLDLISKIRGLS 124 (510)
Q Consensus 54 ~a~~~~~~~~~-~~~~~~~--~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 124 (510)
-|...++...+ ..++|.. .++-.+...+. ...+++.|...+++...... .++-. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34566666663 3334432 34567777777 57899999999998765431 11111 1234566666666555
Q ss_pred hHHHHHHhcccCCC----C--hhhHHHH-HHHHHhCCCHHHHHHHHHHHHhCC---CCCCcchHHHHHHHHH--hCCCcC
Q 010458 125 SAENFFENLPDKMR----G--PDTCSAL-LHSYVQNKKSAEAEALMEKMSECG---FLKCPLPYNHMLNLYI--SNGQLD 192 (510)
Q Consensus 125 ~A~~~~~~~~~~~~----~--~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~--~~g~~~ 192 (510)
|.+.+++..+.-. . ...+.-+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 8888887655421 1 2223333 333333489999999998877542 1233334444554444 456677
Q ss_pred cHHHHHHHHHhC----------CCCChhHHHHHHHHHH--hcCCHHHHHHHHHHHH-------hCC----------CC--
Q 010458 193 KVPQMLQELKKN----------TSPDVVTYNLWLAACA--SQNDKETAEKAFLELK-------KTK----------ID-- 241 (510)
Q Consensus 193 ~a~~~~~~~~~~----------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~-------~~~----------~~-- 241 (510)
++.+.++.+... ..|...+|..+++.++ ..|+++.+...++++. +.. ++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 787877776332 2345667777777654 4677777776666542 110 00
Q ss_pred -----------CCHHHH---------HHHHH--HHHhcCChHHHHHHHHHHHHc--------cCCCC--------hhhHH
Q 010458 242 -----------PDWISY---------STLTS--LYIKMELPEKAATTLKEMEKR--------TCRKN--------RVAYS 283 (510)
Q Consensus 242 -----------~~~~~~---------~~l~~--~~~~~g~~~~A~~~~~~~~~~--------~~~~~--------~~~~~ 283 (510)
+....| .-++. ..+..+..++|.+++++..+. ...++ ...|.
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 111111 11111 223344444665555543321 11111 11222
Q ss_pred HHHH---------HHHhcCCHHHHHHHHHHHHHhcC-CCC-------hhhHHHHHHHHHhcCCHHHHHHHHH--------
Q 010458 284 SLLS---------LYTNMGYKDEVLRIWKKMMSLFA-KMN-------DAEYTCVISSLVKLGEFEKAENIYD-------- 338 (510)
Q Consensus 284 ~l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~-------- 338 (510)
..+. ..+-.+++..|...++.+..... .|+ ...+....-.+...|+.+.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 2222 22456889999999998876532 111 1122222223445699999999997
Q ss_pred HHHhccCCCCcchHHHH--HHHHHhc--CCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcC--CHHHHHHH
Q 010458 339 EWESISGTGDPRVPNIL--LAAYINR--NQLEM--AESFYNRLVTK-GIKP--CYTTWELL-TWGYLKKG--QMEKVLEC 406 (510)
Q Consensus 339 ~~~~~~~~~~~~~~~~l--~~~~~~~--g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-~~~~~~~~--~~~~a~~~ 406 (510)
.....+...+..++..+ +..+... ...++ +..+++.+... .-.| +..++..+ +.++.... ...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 44444444444444332 1122222 22233 66666655432 1122 23344444 33332211 22355555
Q ss_pred HHHHhhcc-CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC-CHHHHH-----HHHHHHHHcCC--C
Q 010458 407 FKKAIGSV-RKWVPD---HRLITAAYNKLEEQGDIDGAEHLLVTLRNAG---HV-STEIYN-----SLLRTYAKAGK--M 471 (510)
Q Consensus 407 ~~~~~~~~-~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~-----~l~~~~~~~g~--~ 471 (510)
+.+.++.. .....+ ..+++.+...+. .|+..+..+......... +. ....|. .+...+...|+ +
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 55544431 111111 122333333333 688877666665543211 11 334553 33444666677 5
Q ss_pred hHHHHHHH
Q 010458 472 PLIIVERM 479 (510)
Q Consensus 472 a~~~~~~m 479 (510)
|.....+.
T Consensus 596 a~~~~~~~ 603 (608)
T PF10345_consen 596 AEEARQQL 603 (608)
T ss_pred HHHHHHHH
Confidence 55555544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.30 E-value=45 Score=32.18 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=69.2
Q ss_pred HHhcCCHHHHHHHHHHHHh---ccCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH----
Q 010458 324 LVKLGEFEKAENIYDEWES---ISGTGD-----PRVPNILLAAYINRNQLEMAESFYNRLVT-------KGIKPCY---- 384 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~---- 384 (510)
+.-.|++.+|.+++...-- .|...+ ...||.+.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4557888888888765321 121111 22346666666677777777777776653 4544432
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 010458 385 -------TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 385 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 433 (510)
.+|| ..-.|...|++-.|.++|.++.. -+..++..|..+..+|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~---vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH---VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHH
Confidence 1233 33456778999999999999886 577788899988888864
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=81.87 E-value=21 Score=31.62 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=22.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 286 LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
|++++..++|.++....-+.-+..-+....+...-|-.|.+.+++..+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344445555555443332222211111222233333344555555555555444443
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.18 E-value=79 Score=33.53 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=62.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHH-----HHHHhhccCCCCCC---
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ--------MEKVLEC-----FKKAIGSVRKWVPD--- 420 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~~~~~~~~~p~--- 420 (510)
-.|......+-+..+++.+....-.++....+.++..|.+.=+ -+++.+. +..+.+....+.|.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L 678 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLL 678 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhh
Confidence 3455666777778888887765555566666666666654211 1122222 22222221123332
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------CCCCCHHHHHHHHHHHHHc
Q 010458 421 -----HRLITAAYNKLEEQGDIDGAEHLLVTLRN--------------AGHVSTEIYNSLLRTYAKA 468 (510)
Q Consensus 421 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~ 468 (510)
...|....-.+.+.|+.++|+.++-.... .+..+...|..++..|...
T Consensus 679 ~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 679 ERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 22333333345588888888888765544 1222567788888888776
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.90 E-value=3 Score=21.56 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=5.4
Q ss_pred HHHHhCCCHHHHHH
Q 010458 148 HSYVQNKKSAEAEA 161 (510)
Q Consensus 148 ~~~~~~~~~~~A~~ 161 (510)
..+...|++++|..
T Consensus 9 ~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 9 RALLAQGDPDEAER 22 (26)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333333333333
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.87 E-value=4.5 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=29.7
Q ss_pred hcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 010458 396 KKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHL 443 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 443 (510)
..++.++|+..|..+++.... .|+ ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888877765211 111 23556677777777777776655
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.63 E-value=40 Score=29.70 Aligned_cols=261 Identities=14% Similarity=0.143 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhCCCcCcHHHHHHHHHhC----C--CCChhHHHHHHHHHHhcC
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPL---PYNHMLNLYISNGQLDKVPQMLQELKKN----T--SPDVVTYNLWLAACASQN 223 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~~ 223 (510)
..++++|+.-|++..+.......+ +...++....+.|++++....|.++..- + .-+..+.|.++..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 345666666666665543111122 2234556666666666666666665432 1 114455666666555555
Q ss_pred CHHHHHHHHHHH----HhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-----------ChhhHHHHHH
Q 010458 224 DKETAEKAFLEL----KKTK-IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-----------NRVAYSSLLS 287 (510)
Q Consensus 224 ~~~~a~~~~~~m----~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~ 287 (510)
+.+.-..+++.- .+.. -..--.|-..|...|...+.+.+..++++++...-... =...|..=++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555444444332 1110 01111233456677777777777777777776541110 1345666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHhc-CCCChhhHHHHHHH-----HHhcCCHHHHHHHH-HHHH---hccCCCCcch---HHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMSLF-AKMNDAEYTCVISS-----LVKLGEFEKAENIY-DEWE---SISGTGDPRV---PNI 354 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~-~~~~---~~~~~~~~~~---~~~ 354 (510)
.|....+-.+-..+|++..... ..|.+.... +|+- +.+.|++++|..-| +... +.| .|...+ |-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLV 277 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLV 277 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHH
Confidence 7777777777777777665432 223333322 2332 34567777765433 3322 223 222222 333
Q ss_pred HHHHHHhcCCHHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHH
Q 010458 355 LLAAYINRNQLEMAESFYNR--LVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLI 424 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~--~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~ 424 (510)
|...+.+.|- .-|+. ..-..-.|.......++.+|.. +++.+-.++++.-.+ .+..|+.+-
T Consensus 278 LANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~---~IM~DpFIR 340 (440)
T KOG1464|consen 278 LANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS---NIMDDPFIR 340 (440)
T ss_pred HHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc---cccccHHHH
Confidence 3344444331 00110 1111123444556667777654 556565556555443 444444433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.21 E-value=20 Score=26.07 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALME 164 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (510)
...++|..+-+++...+ .....+-..-+..+...|++++|..+.+... .||...|.+|-.. +.|-.+.+..-+.
T Consensus 19 HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 19 HCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred hHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 35677888888877653 1122223333456778889999988888774 5777777776543 5677777777777
Q ss_pred HHHhCC
Q 010458 165 KMSECG 170 (510)
Q Consensus 165 ~~~~~~ 170 (510)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 777665
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.11 E-value=5.4 Score=21.90 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 386 TWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+|..+...|...|++++|.+.|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888887764
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 4e-14
Identities = 82/519 (15%), Positives = 151/519 (29%), Gaps = 164/519 (31%)
Query: 87 YKHALEVCEWMELQY---DIKLV-----SGDYAVH--LDLISKIRGLSSAE-NFFENLPD 135
+ H ++ E E QY DI V ++ D+ I LS E + D
Sbjct: 3 HHHHMDF-ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKD 59
Query: 136 KMRGPDTCSALLHSYVQNKKSAEAEALMEKMSEC--GFLKCPL------P------YNHM 181
+ + L + +K+ + +E++ FL P+ P Y
Sbjct: 60 ----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 182 LN-LYISNGQLDK--VP---------QMLQELKKNTSPDVVTYNL------WLAACASQN 223
+ LY N K V Q L EL+ +V+ + W+A +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLS 173
Query: 224 DKETAEKAF----LELKKTKIDPDWISYSTLTSLYIKM-----ELPEKAATTLKEMEKRT 274
K + F L LK + L L ++ + ++ +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 275 CRKNRVAYS-----SLLSLYTNMGYKDEV--LRIWK------KMM------SLFAKMNDA 315
R+ S LL L V + W K++ + ++ A
Sbjct: 232 AELRRLLKSKPYENCLLVL-------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 316 EYTCVISSLVKLGEFEKAE--NIYDEWESISG--------TGDPRVPNILLAA------- 358
T + + E ++ ++ T +PR +I+ +
Sbjct: 285 TTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 359 -----YINRNQLEMA-ESFYNRLVTKGIKPCY--------------TTWELLTWGYLKKG 398
++N ++L ES N L + + L+ W + K
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKS 402
Query: 399 QMEKVL-ECFKKAIGSVRKW-------VPD---------------HRLITAAYNKLE--E 433
+ V+ + K ++ V K +P HR I YN + +
Sbjct: 403 DVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 434 QGD-----IDG--AEHLLVTLRNAGHVSTEIYNSLLRTY 465
D +D H+ L+N H E +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEH--PERMTLFRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 4e-10
Identities = 52/368 (14%), Positives = 113/368 (30%), Gaps = 108/368 (29%)
Query: 71 KYELNRIVRELRKL---KRYKHAL----EVCEWMELQ-YDIK---LV-----------SG 108
K ++ I ELR+L K Y++ L V +++ L+ S
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 109 DYAVHLDLISKIRGLSSAE--NFF--------ENLPDKMRG--PDTCS---ALLHSYV-- 151
H+ L L+ E + ++LP ++ P S + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 152 -QNKKSAEAEALMEKMSEC-----------GFLKC-------PLPYNHMLNLYISNGQLD 192
N K + L + F + +P +L+L +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKS 402
Query: 193 KVPQMLQEL------KKNTSPDVVT-YNLWLAACASQNDKETAEKAFLE-------LKKT 238
V ++ +L +K ++ +++L ++ ++ ++
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 239 KIDPDWI---SYSTLTSLYI-----KMELPEKAA------TTLKEMEKRTCRK--NRVAY 282
+ P ++ YS +I +E PE+ + +E++ A
Sbjct: 463 DLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 283 SSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMND-------AEYTCVIS---SLVKLGEFE 331
S+L+ + YK I +N E + S L+++
Sbjct: 518 GSILNTLQQLKFYKP---YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 332 KAENIYDE 339
+ E I++E
Sbjct: 575 EDEAIFEE 582
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 5e-11
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 5/190 (2%)
Query: 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199
+ + LL +A + S+ + QL +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 200 EL----KKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYI 255
+K + YN + A Q + +K + PD +SY+
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 256 KMELPEKAATT-LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314
+ + L++M + + + + LLS V ++
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 315 AEYTCVISSL 324
+ ++ +
Sbjct: 272 VNTSKLLRDV 281
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 4e-07
Identities = 17/190 (8%), Positives = 50/190 (26%), Gaps = 4/190 (2%)
Query: 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK---KTKIDPDWISYSTLTSLYI 255
Q + S + C + A + + + Y+ + +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMND 314
+ ++ L ++ + ++Y++ L + R ++M K+
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374
++S + + + + P + LL ++ +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 375 LVTKGIKPCY 384
L T
Sbjct: 297 LKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 41.3 bits (95), Expect = 7e-04
Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 435 GDIDGAEHLLVTLRNAG----HVSTEIYNSLLRTYAKAGKMPLI--IVERMQKDNVQMDA 488
+ A HLLV ++ ++YN+++ +A+ G + ++ ++ + D
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 489 ET 490
+
Sbjct: 201 LS 202
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 46/390 (11%), Positives = 98/390 (25%), Gaps = 41/390 (10%)
Query: 81 LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLS--SAENFFENLPDKMR 138
L + A+ + L D S + + +L + + + +
Sbjct: 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162
Query: 139 GPDTCSALLHSYVQ---------NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN- 188
+ ++ + + A AL+ + + Y +L +
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222
Query: 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYS 248
+ + +N+ A+ + + P SY
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYI 280
Query: 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308
L E ++ ++ + Y +Y + ++K SL
Sbjct: 281 FLALTLADKENSQEFFKFFQKAVD-LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339
Query: 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368
+ Y + L K G+F ++E ++E + T P VP +R + A
Sbjct: 340 NPENVYP-YIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTA 397
Query: 369 ESFY---------------NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGS 413
Y G L + + ++ KA
Sbjct: 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC-- 455
Query: 414 VRKWVPDHRLITAAYNK---LEEQGDIDGA 440
+ P A + ID A
Sbjct: 456 --ELDPRS--EQAKIGLAQLKLQMEKIDEA 481
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 44/346 (12%), Positives = 97/346 (28%), Gaps = 29/346 (8%)
Query: 81 LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
L + + L++ + D + Y + L+ S L AE++ ++ +
Sbjct: 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305
Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
D + + + A+ K+ E Y L +G+ +K+ + +
Sbjct: 306 DLLLCKADTLFVRSRFIDVLAITTKILEI-DPYNLDVYPLHLASLHESGEKNKLYLISND 364
Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWIS-YSTLTSLYIKMEL 259
L VT+ N A + F K + +DP + + +
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS--KSSTMDPQFGPAWIGFAHSFAIEGE 422
Query: 260 PEKA------ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313
++A A L + + Y L + +G + +LF
Sbjct: 423 HDQAISAYTTAARLF-------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--Y 473
Query: 314 DAE-YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLA------AYINRNQLE 366
D + + + A N + + AY +
Sbjct: 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533
Query: 367 MAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAI 411
A N+ + + + YL K + +++
Sbjct: 534 AAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 34/273 (12%), Positives = 75/273 (27%), Gaps = 22/273 (8%)
Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
Y LN +L + L + ++ ++
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKI-- 331
Query: 238 TKIDPDWIS-YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
+IDP + Y + + K ++ R + V + ++ Y +
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390
Query: 297 EVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
E R + K ++ + S GE ++A + Y +
Sbjct: 391 EARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL----FQGTHLPY 444
Query: 356 L---AAYINRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVLECFKKAI 411
L ++ + +A + + L K M+ + F+ A+
Sbjct: 445 LFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502
Query: 412 GSVRKWVPDHRLITAAYNKL----EEQGDIDGA 440
V+K + + A + L + D A
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 38/327 (11%), Positives = 95/327 (29%), Gaps = 32/327 (9%)
Query: 125 SAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184
S E++ D +L + N L + E +
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGT 65
Query: 185 YISNGQLDKVPQMLQELKKNTSPDVVTY-NLWLAACASQNDKETAEKAFLELKKTKIDPD 243
+ + +++ + +L + V++ + + E A + K T ++
Sbjct: 66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS--KATTLEKT 123
Query: 244 WI-SYSTLTSLYIKMELPEKA------ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296
+ ++ + ++A A L + + + Y
Sbjct: 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------KGCHLPMLYIGLEYGLTNNSK 176
Query: 297 EVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNI 354
R + + +S+ D V + GE++ AE + + E I G+ +
Sbjct: 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Query: 355 LLAAYINR-------NQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEKVLEC 406
N + A ++ + + + P +T+ + + + G E ++
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDY 292
Query: 407 FKKAIGSVRKWVPDHRLITAAYNKLEE 433
F A+G R ++
Sbjct: 293 FHTALGLRRDDTFSVTMLGHCIEMYIG 319
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 35/283 (12%), Positives = 77/283 (27%), Gaps = 42/283 (14%)
Query: 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK 237
+ N + ++ +L+ YN + A+K
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 238 T-KIDPDW-ISYSTLTSLYIKMELPEKAATTLKE-MEKRTCRKNRVAYSSLLSLYTNMGY 294
+ + +K A + +++ T Y + S + N G
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGN 123
Query: 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNI 354
++ +K + Y + E+ KA++ + + + PNI
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQA-YYYNKEYVKADSSFVKVLELK-------PNI 175
Query: 355 LLAAYINR----------NQLEMAESFYNRLV------TKGIKPCYTT-WELLTWGYLKK 397
+ Y+ R + +A+ +Y +L+ K E + + Y
Sbjct: 176 YIG-YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK----LEEQGD 436
K +K + P + A + LE
Sbjct: 235 RDKVKADAAWKNIL----ALDPTN---KKAIDGLKMKLEHHHH 270
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 56/310 (18%), Positives = 116/310 (37%), Gaps = 45/310 (14%)
Query: 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ---ELKKNTS 206
+ Q ++ + + Y+++ N+Y GQL + + + LK +
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-- 99
Query: 207 PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WISYSTLTSLYIKMELPEKA-- 263
+ Y AA + D E A +A++ + +PD + S L +L + E+A
Sbjct: 100 -FIDGYINLAAALVAAGDMEGAVQAYV--SALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 264 ----ATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTC 319
A + VA+S+L ++ G + ++K ++L N +
Sbjct: 157 CYLKAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYI 207
Query: 320 VI-SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL---AAYINRNQLEMAESFYNRL 375
+ + L + F++A Y S+ P + Y + +++A Y R
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
Query: 376 VTKGIKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---L 431
+ ++P + L +KG + + +C+ A+ + P H + N
Sbjct: 264 IE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL----RLCPTH--ADSLNNLANIK 315
Query: 432 EEQGDIDGAE 441
EQG+I+ A
Sbjct: 316 REQGNIEEAV 325
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 19/126 (15%)
Query: 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILL---AAYINRNQLEMAESFYNRLVTKG 379
+ G+FE AE + +P +LL + + +L+ + F +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61
Query: 380 IKP-CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQG 435
P + L Y ++GQ+++ +E ++ A+ + PD I N L G
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL----RLKPDF--IDGYINLAAALVAAG 115
Query: 436 DIDGAE 441
D++GA
Sbjct: 116 DMEGAV 121
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 44/282 (15%)
Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVT--YNLWLAACASQNDKETAEKAFLE 234
Y ++ ++ G ++ Q L+ N PD+ +L + E A+ +L
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNL-LKALGRLEEAKACYL- 159
Query: 235 LKKTKIDPDW-ISYSTLTSLYIKMELPEKA------ATTLKEMEKRTCRKNRVAYSSLLS 287
K + P++ +++S L ++ A A TL AY +L +
Sbjct: 160 -KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-------NFLDAYINLGN 211
Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDEWESISGT 346
+ D + + + +SL N A + + + G + A + Y +
Sbjct: 212 VLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--- 266
Query: 347 GDPRVPNILL---AAYINRNQLEMAESFYNRLVTKGIKPCY-TTWELLTWGYLKKGQMEK 402
P P+ A + + AE YN + + P + + L ++G +E+
Sbjct: 267 -QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEE 323
Query: 403 VLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQGDIDGAE 441
+ ++KA+ + P+ A N L++QG + A
Sbjct: 324 AVRLYRKAL----EVFPEF--AAAHSNLASVLQQQGKLQEAL 359
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 48/281 (17%), Positives = 107/281 (38%), Gaps = 52/281 (18%)
Query: 178 YNHMLNLYISNGQLDKVPQMLQE-LKKNTSPDVVT--YNLWLAACASQNDKETAEKAFLE 234
+ + NL + G+L++ + ++ P+ NL +Q + A F
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCV-FNAQGEIWLAIHHFE- 193
Query: 235 LKKTKIDPD-WISYSTLTSLYIKMELPEKA------ATTLKEMEKRTCRKNRVAYSSLLS 287
K +DP+ +Y L ++ + + ++A A +L + V + +L
Sbjct: 194 -KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-------PNHAVVHGNLAC 245
Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAE-YTCVISSLVKLGEFEKAENIYDEWESISGT 346
+Y G D + +++ + L + + + Y + ++L + G +AE+ Y+ +
Sbjct: 246 VYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--- 300
Query: 347 GDPRVPNILLAAYINR-------NQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKG 398
P + + N +E A Y + + + P + L ++G
Sbjct: 301 -CPTHAD----SLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQG 353
Query: 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQGD 436
++++ L +K+AI + P A N L+E D
Sbjct: 354 KLQEALMHYKEAI----RISPTF--ADAYSNMGNTLKEMQD 388
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 22/193 (11%), Positives = 59/193 (30%), Gaps = 4/193 (2%)
Query: 253 LYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM 312
+ ++AA + +KN + Y + + ++V I+ +++++
Sbjct: 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 354
Query: 313 NDAEYTCVISSLVKLGEFEKAENIYDE-WESISGTGDPRVPNILLAAYINRNQLEMAESF 371
Y + + + I+ + E V L+ Y +++ +A
Sbjct: 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKI 413
Query: 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431
+ + K + + + F++ + S I A +
Sbjct: 414 FELGLKKYGDIPEYVLAYIDY-LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472
Query: 432 EEQ-GDIDGAEHL 443
E GD+ +
Sbjct: 473 ESNIGDLASILKV 485
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 35/381 (9%), Positives = 93/381 (24%), Gaps = 74/381 (19%)
Query: 81 LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP 140
+ + + K ++ + + + + +
Sbjct: 120 KQAMSKLKEKFG-----DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174
Query: 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQE 200
T + S +K+ + + K S + K + L+ ++ E
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF------EEQLDKNNE 228
Query: 201 LKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260
+K ++ +ND A + K ++ P SY + +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK--KAIELFPRVNSYIYMALIMADRNDS 286
Query: 261 EKA---------------------ATTLKEMEK------------RTCRKNRVAYSSLLS 287
+ ++ +N Y L
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346
Query: 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG 347
L D+ ++ + F + + L +F+KA YD +
Sbjct: 347 LAYRENKFDDCETLFSEAKRKFPEAPEV-PNFFAEILTDKNDFDKALKQYDLAIEL---- 401
Query: 348 DPRVPNILLAAYINR----------------NQLEMAESFYNRLVTKGIKP-CYTTWELL 390
+ ++ Y+ A + + + P L
Sbjct: 402 ENKLDG----IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGL 455
Query: 391 TWGYLKKGQMEKVLECFKKAI 411
L++ +++ + F+++
Sbjct: 456 AQMKLQQEDIDEAITLFEESA 476
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 38/264 (14%), Positives = 81/264 (30%), Gaps = 41/264 (15%)
Query: 243 DWISYSTLTSLYIK--MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300
+W Y + + L + +++ME+ + + YS + + M E +
Sbjct: 18 EW--YKMIRQFSVPDAEILKAEVEQDIQQMEED--QDLLIYYSLMCFRHQLMLDYLEPGK 73
Query: 301 IWKKMMSLFAKMNDAEYTCVISSLV--------------KLGEFEKAENIYDEWESISG- 345
+ ++ + E + + E+ +A Y E E
Sbjct: 74 TYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF 133
Query: 346 -TGDPRVPNIL--LA-AYINRNQLEMAESFYNR-LVTKGIKPCYTTWELLTWG-----YL 395
+ D +A AY + Q ++ + L P Y+ + + Y
Sbjct: 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193
Query: 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQGDIDGAEH-----LLVT 446
+K L + A+ + + R I + + + GD A V+
Sbjct: 194 DFKHYDKALPHLEAALELAMD-IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252
Query: 447 LRNAGHVSTEIYNSLLRTYAKAGK 470
+ ++ L T KAG+
Sbjct: 253 REKVPDLLPKVLFGLSWTLCKAGQ 276
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 22/250 (8%), Positives = 60/250 (24%), Gaps = 46/250 (18%)
Query: 178 YNHMLNLYISNGQLD-------KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230
+ + Y Q + + Q + + + + + A
Sbjct: 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALP 203
Query: 231 AF---LELKKTKIDPDWI--SYSTLTSLYIKMELPEKAATTLKE----MEKRTCRKNRVA 281
LEL + +I S + + Y + + A ++ ++
Sbjct: 204 HLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263
Query: 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341
L G + + ++ + + Y + L + + E +
Sbjct: 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD-- 321
Query: 342 SISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401
LL+ + +N E+ + E
Sbjct: 322 -------------LLSYFEKKNLHAYIEACARSAAAV---------------FESSCHFE 353
Query: 402 KVLECFKKAI 411
+ ++K +
Sbjct: 354 QAAAFYRKVL 363
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 22/269 (8%), Positives = 67/269 (24%), Gaps = 20/269 (7%)
Query: 178 YNHMLNLYISNGQLDK-VPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236
+ + + +P + Q VV + + +
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQAHGLTPQ-QVVAIASHDGGKQALETVQRLLPVLC--Q 131
Query: 237 KTKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295
+ P+ ++ ++ +E + L + T + VA +S +
Sbjct: 132 AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT-PEQVVAIASNGGGKQALETV 190
Query: 296 DEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNIL 355
+L + + L + A + L ++ + + ++
Sbjct: 191 QRLLPVLCQAHGLTPQQVVAIASN-GGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASN 248
Query: 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYT-TWELLTWGYLKKGQMEKVLECFKKAIGSV 414
++ + G+ P + G ++++L +A
Sbjct: 249 GGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH--- 303
Query: 415 RKWVPDHRLITAAYNK---LEEQGDIDGA 440
P + A + + +
Sbjct: 304 -GLTPQQ--VVAIASNGGGKQALETVQRL 329
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 19/155 (12%)
Query: 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILL---AAYINRNQLEMAESFYNRLVTKGI 380
E + A+ Y + + D R +L + + E A +
Sbjct: 81 FQTEMEPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136
Query: 381 KPCYT-TWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL----EEQG 435
P + +E L L+ + + E F+K++ + + + ++ ++
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSL----RLNRNQ---PSVALEMADLLYKER 189
Query: 436 DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470
+ A G + +R
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED 224
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 44/240 (18%)
Query: 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA------ATTLKEME 271
+ A + + K ++ D + + + E A A
Sbjct: 14 KFYKARQFDEAIEHYN--KAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--- 68
Query: 272 KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331
R+ R Y + + +G L KK + + K T I L KL E
Sbjct: 69 ----REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI--LTKLRNAE 122
Query: 332 KAENIYDEWESISGTGDPRVPNILLAAYINR-------NQLEMAESFYNRLVTKGIKPCY 384
K + + +P + A Y ++ P
Sbjct: 123 KELKKAEAEAYV----NPEKAE----EARLEGKEYFTKSDWPNAVKAYTEMIK--RAPED 172
Query: 385 -TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK---LEEQGDIDGA 440
+ K + + KAI + P+ + A K + A
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAI----EKDPNF--VRAYIRKATAQIAVKEYASA 226
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.46 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.19 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.19 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.14 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.0 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.99 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.98 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.77 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.75 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.68 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.68 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.66 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.53 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.49 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.43 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.3 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.24 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.23 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.19 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.07 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.84 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.73 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.67 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.6 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.47 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.45 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.18 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.85 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.85 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.8 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.67 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.56 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.52 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.4 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.19 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.89 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.68 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.26 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.25 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.93 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.75 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.51 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.29 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.06 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.24 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.78 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.02 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.88 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.86 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.58 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.88 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.55 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.16 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.04 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.3 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.3 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.09 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.07 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.18 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.42 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.14 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.87 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.26 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.89 | |
| 1s6c_A | 183 | KV4 potassium channel-interacting protein kchip1B; | 80.01 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=314.75 Aligned_cols=427 Identities=11% Similarity=0.001 Sum_probs=352.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|..+++++.. ..|+..++..++..|.+.|++++|+.+|+.+... ++++..+..++.+|.+.|++++|.++|++
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 788888888875 4567788888999999999999999999887643 56788888999999999999999999986
Q ss_pred cccCC-----------------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHH-------------
Q 010458 133 LPDKM-----------------RGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHM------------- 181 (510)
Q Consensus 133 ~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l------------- 181 (510)
+.... .+..+|+.++.+|.+.|++++|.++|+++.+.+ |+ ...+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHH
Confidence 44332 136788999999999999999999999988765 33 2333322
Q ss_pred -------------------------HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 182 -------------------------LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 182 -------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
+..|.+.|++++|.++|+++.+. +++..+++.++.++.+.|++++|.++|+++.
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34455677888888888888765 5688999999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhh
Q 010458 237 KTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE 316 (510)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (510)
+.+ +.+..++..++.++.+.|++++|..+++++.+..+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 333 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 409 (597)
T 2xpi_A 333 EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPA 409 (597)
T ss_dssp HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHH
Confidence 765 34677888999999999999999999999987643 378889999999999999999999999998753 235678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
|+.++.++.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+... .+..+|..++..|.+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 9999999999999999999999998764 44788899999999999999999999999988653 378899999999999
Q ss_pred cCCHHHHHHHHHHHhhccC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--
Q 010458 397 KGQMEKVLECFKKAIGSVR--KWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK-- 470 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 470 (510)
.|++++|.++|+++.+... +..|+ ..+|..++.+|.+.|++++|.++++++.+.++.++.+|..+..+|.+.|+
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999986311 23566 78999999999999999999999999999888889999999999999999
Q ss_pred ChHHHHHHHHhCCCCCCHH-HHHHH
Q 010458 471 MPLIIVERMQKDNVQMDAE-TQKVL 494 (510)
Q Consensus 471 ~a~~~~~~m~~~~~~pd~~-t~~~l 494 (510)
+|...|+++.+. .|+.. .+..+
T Consensus 568 ~A~~~~~~~l~~--~p~~~~~~~~l 590 (597)
T 2xpi_A 568 LAITHLHESLAI--SPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCChHHHHHH
Confidence 899999998874 45543 44433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=315.90 Aligned_cols=418 Identities=10% Similarity=-0.007 Sum_probs=364.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
.++...|+.++..+.+.|++++|+.+|+++.... |+..++..++.+|...|++++|..+|+.+....+++.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 4678889999999999999999999999998653 5778889999999999999999999999977667899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhC---------------CCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSEC---------------GFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 212 (510)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+..+.+...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853221 2233578999999999999999999999999988755555554
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 213 NLW--------------------------------------LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254 (510)
Q Consensus 213 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 254 (510)
..+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 444 44566789999999999998765 58899999999999
Q ss_pred HhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 255 IKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE 334 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 334 (510)
.+.|++++|.++|+++.+.++. +..++..++.++.+.|++++|..+++++... .+.+..++..++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999988655 8889999999999999999999999999865 3446788999999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 010458 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSV 414 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 414 (510)
++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 470 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL- 470 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999998754 34677999999999999999999999999998754 47889999999999999999999999999973
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-HHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCC
Q 010458 415 RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA------GHVS-TEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQ 485 (510)
Q Consensus 415 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~ 485 (510)
.+.+..+|..++.+|.+.|++++|.++|+++.+. .+.+ ..+|..++.+|.+.|+ +|...++++.+.+ +
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 3457899999999999999999999999999876 2222 6899999999999999 9999999998765 3
Q ss_pred CCHHHHHHHHhhc
Q 010458 486 MDAETQKVLKITS 498 (510)
Q Consensus 486 pd~~t~~~l~~~~ 498 (510)
.+..++..+...+
T Consensus 548 ~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 548 NDANVHTAIALVY 560 (597)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 4677777777655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=251.63 Aligned_cols=382 Identities=13% Similarity=0.057 Sum_probs=340.4
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCC
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKK 155 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 155 (510)
+...+.+.|++++|++.++.+.+.. |.++..+..+...+...|++++|...++...+..| +..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4567788999999999999998875 67778888889999999999999999999888766 57899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 156 SAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
+++|...|+++.+.. |+ ..+|..+..++.+.|++++|.+.|+++.+..+.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999865 44 457999999999999999999999999988777888899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh
Q 010458 235 LKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND 314 (510)
Q Consensus 235 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (510)
+.+.. +.+..+|..+...+.+.|++++|...|+++.+.++. +...|..+...+...|++++|...+++.....+ .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 98764 346788999999999999999999999999998654 678899999999999999999999999988532 246
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
.++..+..++...|++++|...|+++.+..+ .+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 7889999999999999999999999997653 356789999999999999999999999999874 34788999999999
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
...|++++|.+.++++.+ ..+.+..++..+..++.+.|++++|...|+++.+..|.....|..+...+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999996 3345688999999999999999999999999999998899999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-28 Score=235.37 Aligned_cols=371 Identities=13% Similarity=0.078 Sum_probs=326.2
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. |.++..|..++..+.+.|++++|+..|++
T Consensus 16 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889998888764 5567778888889999999999999999998875 77889999999999999999999999999
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChh
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVV 210 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 210 (510)
+....|+ ..+|..+..++...|++++|.+.|+++.+.+ |+ ...+..+...+...|++++|.+.|+++.+..+.+..
T Consensus 93 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9888775 6789999999999999999999999999875 44 456778888999999999999999999988777899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
+|..+..++...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+..+. +..++..+..++.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHH
Confidence 99999999999999999999999998765 346788999999999999999999999999987544 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAES 370 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 370 (510)
..|++++|...++++..... .+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus 249 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988532 245789999999999999999999999999764 4577889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCC
Q 010458 371 FYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGD 436 (510)
Q Consensus 371 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 436 (510)
.++++.+.. +.+..++..+...+.+.|++++|.+.|+++++. .+.+...+..+...+...|+
T Consensus 327 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 327 LYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHhHHHHHHHccC
Confidence 999999864 336788999999999999999999999999963 23356778888777776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=250.40 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHccCCCChhh
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL---------PEKAATTLKEMEKRTCRKNRVA 281 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~ 281 (510)
.++.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555555555555555555555555555555555555555555554433 3455555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (510)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=251.47 Aligned_cols=206 Identities=14% Similarity=0.189 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCC---------H
Q 010458 157 AEAEALMEKMSECGFLKCPL-PYNHMLNLYISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQND---------K 225 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---------~ 225 (510)
..+..+.+.+.+.+..+.+. .++.+|++|++.|++++|.++|++|.+. ..||..+||.+|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34566667788777765554 5888999999999999999999999988 88999999999999987664 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 010458 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362 (510)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (510)
.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-25 Score=221.43 Aligned_cols=401 Identities=13% Similarity=0.032 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSY 150 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 150 (510)
..|......+.+.|++++|+..|+.+.+.+ |++..+..++.++...|++++|+..++.+.+..|+ ..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 456666777778888888888888887764 46777777888888888888888888877776664 56777788888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC-----------------------------------cCcHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-----------------------------------LDKVP 195 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----------------------------------~~~a~ 195 (510)
...|++++|...|+.+.+.+. ++......++..+..... .....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 888888888888888777652 233333333322222110 01111
Q ss_pred HHHHHHHhC-C---------CCChhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----C--CC------CCCHHHHHH
Q 010458 196 QMLQELKKN-T---------SPDVVTYNLWLAACAS---QNDKETAEKAFLELKK-----T--KI------DPDWISYST 249 (510)
Q Consensus 196 ~~~~~~~~~-~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~--~~------~~~~~~~~~ 249 (510)
.+...+... . +.+...+......+.. .|++++|...|+++.+ . .. +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111000 0 1124444444444443 6777777777777655 2 10 122455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE 329 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (510)
+...+...|++++|...|+++.+..+. ...+..+..++...|++++|...++++.... +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 677777777777777777777765433 6666777777777777777777777776642 2244566667777777777
Q ss_pred HHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 330 FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKK 409 (510)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 409 (510)
+++|...++.+.+..+ .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777765442 2455666677777777777777777777766532 2455666777777777777777777777
Q ss_pred HhhccCCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 010458 410 AIGSVRKWVPD----HRLITAAYNKLEE---QGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ 480 (510)
Q Consensus 410 ~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~ 480 (510)
+.+... -.++ ...+..+..++.. .|++++|...++++.+..+.+..++..+...|.+.|+ +|...|++..
T Consensus 398 a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELEN-KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHH-TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhh-ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 765311 1111 3366677777777 7777777777777777666667777777777777777 6777777766
Q ss_pred hC
Q 010458 481 KD 482 (510)
Q Consensus 481 ~~ 482 (510)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=215.02 Aligned_cols=314 Identities=10% Similarity=0.024 Sum_probs=180.1
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhc
Q 010458 54 SAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENL 133 (510)
Q Consensus 54 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 133 (510)
.+...+.+..... +.+...+..++..+.+.|++++|+.+|+.+.+.. |.++..+..++.++...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444433 5577788889999999999999999999988764 667888889999999999999999999998
Q ss_pred ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-c---chHHHHHHH------------HHhCCCcCcHHH
Q 010458 134 PDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKC-P---LPYNHMLNL------------YISNGQLDKVPQ 196 (510)
Q Consensus 134 ~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~------------~~~~g~~~~a~~ 196 (510)
.+..|+ ..++..+...|...|++++|.+.|+++.+.+ |+ . ..+..++.. +...|++++|..
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887664 7788889999999999999999999988765 43 3 455555333 555555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR 276 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 276 (510)
.|+++.+..+.+..++..++.++.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+++.+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 165 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555555444455555555555555555555555555554432 234455555555555555555555555555544222
Q ss_pred CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 277 KNRVAYSSL------------LSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKAENIYDE 339 (510)
Q Consensus 277 ~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 339 (510)
+...+..+ ...+...|++++|..+|+++.... |+ ...+..+..++.+.|++++|...++.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22222222 344444444444444444444421 11 11333444444444444444444444
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 340 WESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 377 (510)
+.+.. +.+...|..+..+|...|++++|...++++.+
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44322 11333444444444444444444444444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-25 Score=215.84 Aligned_cols=368 Identities=10% Similarity=-0.007 Sum_probs=299.2
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
...+...+..+.+.|++++|+..|+++....|++.+|..+..++...|++++|...++++.+.+. .+..+|..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 45677888899999999999999999999889999999999999999999999999999998762 35678999999999
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------------------
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKK----------------------------- 237 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------------------------- 237 (510)
+.|++++|...|+++....+++......++..+........+.+.+..+..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999988666666655555554443333332222211100
Q ss_pred ------CCC---------CCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----c--cC------CCChhhHHHHH
Q 010458 238 ------TKI---------DPDWISYSTLTSLYIK---MELPEKAATTLKEMEK-----R--TC------RKNRVAYSSLL 286 (510)
Q Consensus 238 ------~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~l~ 286 (510)
... +.+...+......+.. .|++++|...|+++.+ . .+ +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000 1124455555555554 8999999999999988 3 11 22456788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHH
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLE 366 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 366 (510)
..+...|++++|..+++++...... ...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999886543 7788899999999999999999999998764 346778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 367 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
+|...++++.+.... +...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...+++
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999987544 6778999999999999999999999999874 344678899999999999999999999999
Q ss_pred HHhCCCCC------HHHHHHHHHHHHH---cCC--ChHHHHHHHHhC
Q 010458 447 LRNAGHVS------TEIYNSLLRTYAK---AGK--MPLIIVERMQKD 482 (510)
Q Consensus 447 ~~~~~~~~------~~~~~~l~~~~~~---~g~--~a~~~~~~m~~~ 482 (510)
+.+..+.+ ...|..+...+.. .|+ +|...++++.+.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 98876654 3489999999999 898 899999998874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-24 Score=208.07 Aligned_cols=301 Identities=13% Similarity=0.090 Sum_probs=172.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
|.++..+..++..+.+.|++++|+.+|+.+.+..| ++.+|..+..++...|++++|...|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 55666777777777777777777777777766554 466777777777777777777777777776652 2455677777
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCCh---hHHHHHHH------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPDV---VTYNLWLA------------ACASQNDKETAEKAFLELKKTKIDPDWISY 247 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~------------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 247 (510)
.+|.+.|++++|.+.|+++.+..+.+. .++..++. .+...|++++|...|+++.+.. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 777777777777777777776654444 55554433 3566666666666666665543 2345556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHHHH------
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYTCV------ 320 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l------ 320 (510)
..++.+|.+.|++++|...|+++.+..+. +..++..+..+|...|++++|...|+++... .|+. ..+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 66666666666666666666666655332 4556666666666666666666666666543 2222 222222
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 321 ------ISSLVKLGEFEKAENIYDEWESISGTGD----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 321 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
...+...|++++|...|+.+.+..+. + ...+..+..++.+.|++++|...++++.+.. +.+...|..+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34444444444444444444432111 1 1233444444444444444444444444332 1133444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 010458 391 TWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..+|...|++++|...|++++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 444444444444444444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-23 Score=205.36 Aligned_cols=229 Identities=13% Similarity=0.058 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL 327 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (510)
..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++..... .+..++..+...+...
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhc
Confidence 333444444444444444444444432 2234444444444444444444444444444321 1233444444444444
Q ss_pred CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010458 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECF 407 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 407 (510)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+...+...|++++|...|
T Consensus 324 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44444444444444332 11333444444444444444444444444444321 12334444444444444444444444
Q ss_pred HHHhhccC---CCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--Ch
Q 010458 408 KKAIGSVR---KWVPDHRLITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MP 472 (510)
Q Consensus 408 ~~~~~~~~---~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a 472 (510)
+++.+..+ ........+.....++... |++++|...++++.+..+.+..+|..+...|...|+ +|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 44433210 1112222233333344444 444444444444444444444444444444444444 44
Q ss_pred HHHHHHHHh
Q 010458 473 LIIVERMQK 481 (510)
Q Consensus 473 ~~~~~~m~~ 481 (510)
...|++..+
T Consensus 482 ~~~~~~al~ 490 (537)
T 3fp2_A 482 IELFEDSAI 490 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-22 Score=197.22 Aligned_cols=377 Identities=13% Similarity=0.010 Sum_probs=305.4
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 148 (510)
....|..+...+.+.|++++|+..|+.+.+.. |.++..+..++.++...|++++|++.++++.+..|+ +.++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45678899999999999999999999999875 778999999999999999999999999999888774 788999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcch---------------------------------------------------
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLP--------------------------------------------------- 177 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~--------------------------------------------------- 177 (510)
++...|++++|...|+.+ ... |+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLN--GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999999744 322 22111
Q ss_pred ------------------HHHHHHHHHhC--------CCcCcHHHHHHHHHhCCCCChh-------HHHHHHHHHHhcCC
Q 010458 178 ------------------YNHMLNLYISN--------GQLDKVPQMLQELKKNTSPDVV-------TYNLWLAACASQND 224 (510)
Q Consensus 178 ------------------~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~ 224 (510)
...+...+... |++++|..+|+++.+..+.+.. ++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 11111111111 3678889999998877555543 56777788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
+++|...++++.+. .|+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999876 455888999999999999999999999999988654 788899999999999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---
Q 010458 305 MMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK--- 381 (510)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 381 (510)
+..... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+....
T Consensus 336 a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 988643 256788899999999999999999999999765 346778999999999999999999999998864321
Q ss_pred --CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 382 --PCYTTWELLTWGYLKK----------GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 382 --p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.....+......+... |++++|...|+++.+. .+.+..++..+..++.+.|++++|...|+++.+
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1222345556778888 9999999999999973 345678899999999999999999999999999
Q ss_pred CCCCCHHHHH
Q 010458 450 AGHVSTEIYN 459 (510)
Q Consensus 450 ~~~~~~~~~~ 459 (510)
..+.+.....
T Consensus 491 ~~~~~~~~~~ 500 (537)
T 3fp2_A 491 LARTMDEKLQ 500 (537)
T ss_dssp HC--CHHHHH
T ss_pred hCCCcHHHHH
Confidence 9887655543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-21 Score=179.69 Aligned_cols=317 Identities=11% Similarity=0.005 Sum_probs=196.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+..+.+..++..+..++...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 33444444444444444444444443321 12334444444444444444444444444443333444444444444444
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHH
Q 010458 223 NDKETAEKAFLELKKTKID--PDWISYST------------LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL 288 (510)
Q Consensus 223 ~~~~~a~~~~~~m~~~~~~--~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 288 (510)
|++++|...|+++.+.... .+...+.. +...+...|++++|...++++.+..+. +...+..+...
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 5555555554444433210 12222222 245667777777777777777766443 56667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHH------------HHH
Q 010458 289 YTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPN------------ILL 356 (510)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~ 356 (510)
+...|++++|...++++.... +.+...+..+...+...|++++|...++...+..+. +...+. .+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776642 224556667777777777777777777777654322 222222 236
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCY----TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLE 432 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 432 (510)
..+...|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+. .+.+..++..+..++.
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHH
Confidence 6688899999999999998876432 22 23445778888999999999999999863 3447788889999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 433 EQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 433 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
..|++++|...|+++.+..|.+...+..+..+...
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999988888888877776554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-21 Score=179.83 Aligned_cols=329 Identities=9% Similarity=0.019 Sum_probs=202.3
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
++..+..+...+...|++++|+..|+.+.+.. |.++..+..+...+...|++++|...++++.+..| +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 35667888889999999999999999998875 67788899999999999999999999999888766 4788888999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCC----CcchHHHH------------HHHHHhCCCcCcHHHHHHHHHhCCCCChhHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLK----CPLPYNHM------------LNLYISNGQLDKVPQMLQELKKNTSPDVVTY 212 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 212 (510)
.+...|++++|...|+++.+.. | +...+..+ ...+...|++++|.+.++++.+..+.+..++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 9999999999999999998864 4 33344433 3444455555555555555554444445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc
Q 010458 213 NLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM 292 (510)
Q Consensus 213 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 292 (510)
..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+..+. +...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH----
Confidence 555555555555555555555554432 233444555555555555555555555555443221 11111111000
Q ss_pred CCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhcCCHHHH
Q 010458 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP----RVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 368 (510)
. .......+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 0 0000112244566666677777666666654322 22 1233456666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHH
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD-HRLITAAYNKLEE 433 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 433 (510)
...+++..+..+ .+...+..+...+...|++++|.+.|+++.+. .|+ ...+..+..+...
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH----NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHH
Confidence 777777766532 25566677777777777777777777777742 333 4455555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-20 Score=175.51 Aligned_cols=284 Identities=11% Similarity=-0.017 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
+..+..++..+...|++++|.++|+++.+... .+...+..++..+...|++++|..+++++.+..+.+..++..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44444555555555555555555555544331 13334444444445555555555555555444334444444455555
Q ss_pred HhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHH
Q 010458 220 ASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEV 298 (510)
Q Consensus 220 ~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (510)
...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+..+. +...
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~----------------- 161 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLP----------------- 161 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHH-----------------
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHH-----------------
Confidence 5555 4555555555444332 122334444444444444444444444444443222 2333
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 299 LRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 162 ------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 162 ------------------MLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp ------------------HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444444455555555555555544332 223344555555555555555555555555432
Q ss_pred C--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 379 G--------IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 379 ~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
. ...+..++..+...+...|++++|...++++.+. .+.+...+..+..++.+.|++++|...++++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 1 0223345666666666666666666666666642 2234556666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHH
Q 010458 451 GHVSTEIYNSLLRTY 465 (510)
Q Consensus 451 ~~~~~~~~~~l~~~~ 465 (510)
.+.++..+..+..++
T Consensus 300 ~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 300 RRDDTFSVTMLGHCI 314 (330)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHH
Confidence 666666666666665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-19 Score=178.56 Aligned_cols=412 Identities=12% Similarity=0.073 Sum_probs=305.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC
Q 010458 59 MRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR 138 (510)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 138 (510)
+++.++.. |-+...|..++. +.+.|++++|..+|+.+.+. .|.+...|...+..+.+.|++++|..+|+++....|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 45555544 558889999998 47889999999999999987 478889999999999999999999999999999888
Q ss_pred ChhhHHHHHHHH-HhCCCHHHHHH----HHHHHHh-CCCCC-CcchHHHHHHHHHh---------CCCcCcHHHHHHHHH
Q 010458 139 GPDTCSALLHSY-VQNKKSAEAEA----LMEKMSE-CGFLK-CPLPYNHMLNLYIS---------NGQLDKVPQMLQELK 202 (510)
Q Consensus 139 ~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~-~~~~p-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 202 (510)
+...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|++++|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 888888777533 45677766655 7776654 35444 44577777776654 678999999999998
Q ss_pred hCCCCC--hhHHHHHHHHH-------------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHH
Q 010458 203 KNTSPD--VVTYNLWLAAC-------------ASQNDKETAEKAFLEL------KKTK---IDPD--------WISYSTL 250 (510)
Q Consensus 203 ~~~~~~--~~~~~~l~~~~-------------~~~~~~~~a~~~~~~m------~~~~---~~~~--------~~~~~~l 250 (510)
+. +.+ ...|....... ...++++.|..++.+. .+.. ++|+ ...|...
T Consensus 158 ~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 VN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred hc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 74 221 23444333211 1345677777777652 2221 2343 2455555
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHccCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHh
Q 010458 251 TSLYIKM----ELP----EKAATTLKEMEKRTCRKNRVAYSSLLSLYTN-------MGYKD-------EVLRIWKKMMSL 308 (510)
Q Consensus 251 ~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 308 (510)
+...... ++. ..+..+|++.....+. +...|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433322 232 4778899999887544 78889888888875 78887 899999998763
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010458 309 FAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD--PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTT 386 (510)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 386 (510)
-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+.... +...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHH
Confidence 12234677888899999999999999999999975 343 247888898899999999999999999986322 3333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH----HHHHHH
Q 010458 387 WELLTWG-YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST----EIYNSL 461 (510)
Q Consensus 387 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l 461 (510)
|...+.. +...|++++|..+|+++++. .+.+...|..++..+.+.|+.++|..+|++....++.++ ..|...
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3332222 34689999999999999974 334688999999999999999999999999999876443 489999
Q ss_pred HHHHHHcCC--ChHHHHHHHHhC
Q 010458 462 LRTYAKAGK--MPLIIVERMQKD 482 (510)
Q Consensus 462 ~~~~~~~g~--~a~~~~~~m~~~ 482 (510)
+......|+ .+..+++++.+.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 999899999 777788887653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-18 Score=170.68 Aligned_cols=382 Identities=13% Similarity=0.019 Sum_probs=318.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHH----hcChh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRK----LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK----IRGLS 124 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 124 (510)
..+...++...+.| ++.++..+...|.. .+++++|+..|+...+.+ ++..+..+...|.. .++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 34456666666544 77888888888888 899999999999998764 67788889999988 89999
Q ss_pred hHHHHHHhcccCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCCcCcHHH
Q 010458 125 SAENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQ 196 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~ 196 (510)
+|.+.|++..+.+ ++..+..|...|.. .+++++|...|++..+.| ++..+..|...|.. .+++++|.+
T Consensus 97 ~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 97 QAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999988764 67778888888888 899999999999999875 66788888888887 789999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 010458 197 MLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLK 268 (510)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 268 (510)
.|++..+. .+..++..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 173 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 173 WYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998775 467888889999888 899999999999998865 56778888888887 899999999999
Q ss_pred HHHHccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHH
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL-----GEFEKAENIYDE 339 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~ 339 (510)
+..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...+... +++++|...|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998763 55677788888887 899999999999988754 455677777788777 899999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 010458 340 WESISGTGDPRVPNILLAAYINRN---QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIG 412 (510)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 412 (510)
..+.+ +...+..+...|...| +.++|..+|++..+.| +...+..+...|.. .+++++|.++|+++.+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98764 4567778888888766 7899999999999874 67888889999988 8999999999999998
Q ss_pred ccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Q 010458 413 SVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHV---STEIYNSLLRTYAK 467 (510)
Q Consensus 413 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 467 (510)
. + +...+..+...|.+ .+++++|...|++..+.++. ++.....+...+..
T Consensus 396 ~--~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 396 Q--G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp T--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred C--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 5 3 67888889999998 89999999999999998854 55555555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-19 Score=168.29 Aligned_cols=287 Identities=8% Similarity=-0.028 Sum_probs=223.9
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
.+.++..+...+..+...|++++|.++|+++.+..| +...+..++..+...|++++|...++++.+... .+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 467788899999999999999999999999988776 467788888999999999999999999998652 367789999
Q ss_pred HHHHHhCC-CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 182 LNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 182 ~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
...+...| ++++|.+.|++..+..+.+..+|..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999999998877788999999999999999999999999988764 33456677799999999999
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHhcCCHHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFA--------KMNDAEYTCVISSLVKLGEFEK 332 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 332 (510)
++|...+++..+..+. +...+..+...+...|++++|...++++..... +.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999987544 678888999999999999999999998877421 1223456666666666666666
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
|...+++..+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence 666666666543 22455556666666666666666666666555432 1444555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-20 Score=173.92 Aligned_cols=283 Identities=14% Similarity=0.071 Sum_probs=191.5
Q ss_pred CCCcCcHHH-HHHHHHhCCC--C--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010458 188 NGQLDKVPQ-MLQELKKNTS--P--DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK 262 (510)
Q Consensus 188 ~g~~~~a~~-~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 262 (510)
.|++++|.+ .|++.....+ | +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554443311 1 23455566666666666666666666666553 3355566666666666677777
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHH-H--------------HHHHHHhc
Q 010458 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYT-C--------------VISSLVKL 327 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~~~~~ 327 (510)
|...|+++.+..+. +..++..+...+...|++++|...++++....... ...+. . .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77666666665433 55666666666666677777777776666543221 11111 1 23333478
Q ss_pred CCHHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010458 328 GEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 406 (510)
|++++|...++++.+..+.. +..++..+...|...|++++|...++++.+..+ .+...+..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999999999888754332 467788888899999999999999999887643 3577888889999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------HHHHHHHHHHHHHcCC--ChH
Q 010458 407 FKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS-----------TEIYNSLLRTYAKAGK--MPL 473 (510)
Q Consensus 407 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~--~a~ 473 (510)
|+++++. .+.+..++..+..+|.+.|++++|...|+++.+..+.+ ..+|..+..+|...|+ +|.
T Consensus 274 ~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 274 YRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9998863 24457788889999999999999999999888766554 7889999999999998 565
Q ss_pred HHHH
Q 010458 474 IIVE 477 (510)
Q Consensus 474 ~~~~ 477 (510)
.++.
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 5544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-20 Score=174.39 Aligned_cols=267 Identities=15% Similarity=0.072 Sum_probs=173.0
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK 256 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 256 (510)
.+..+...+.+.|++++|...|+++.+..+.+..++..+..++...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344444444555555555555555444444444555555555555555555555555554432 2244455555555555
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHhcCCC-ChhhHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSS---------------LLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCV 320 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 320 (510)
.|++++|...++++.+..+. +...+.. .+..+...|++++|...++++....... +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 55555555555555544322 1111110 1223337788888888888887753321 35677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010458 321 ISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM 400 (510)
Q Consensus 321 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 400 (510)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+..+ .+...+..+...|.+.|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCH
Confidence 888888888888888888887654 33567788888889999999999999998887643 3677888888999999999
Q ss_pred HHHHHHHHHHhhccCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 401 EKVLECFKKAIGSVRKW--------VPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 401 ~~a~~~~~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
++|...|+++.+..+.. +....+|..+..++...|++++|..++++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999888641111 011678899999999999999999887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-17 Score=160.97 Aligned_cols=364 Identities=14% Similarity=0.058 Sum_probs=307.6
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHH----hcChhhHHHHHHhcccCCCChhhHHHHHHHHHh----CCCHHHHHH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISK----IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEA 161 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~ 161 (510)
++..+....+.+ ++..+..+...+.. .+++++|...|++..+. .++..+..|...|.. .+++++|.+
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 455555555443 77888888888888 89999999999998776 367788889999998 999999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----CCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHH
Q 010458 162 LMEKMSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS----QNDKETAEKAFL 233 (510)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 233 (510)
.|++..+.| ++..+..|...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|.+.|+
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999875 66778888888888 78999999999998765 356778888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010458 234 ELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKM 305 (510)
Q Consensus 234 ~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 305 (510)
+..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998865 67788889999988 899999999999998864 56778888888886 88999999999998
Q ss_pred HHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 010458 306 MSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR-----NQLEMAESFYNRLV 376 (510)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 376 (510)
.+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+...|... ++.++|...|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8764 45567777777777 899999999999998754 456777888888887 89999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 010458 377 TKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRN 449 (510)
Q Consensus 377 ~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 449 (510)
+.| +...+..+...|...| ++++|+++|+++.+. .+...+..+...|.. .+++++|..+|++..+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 875 5577788888887766 789999999999974 468889999999998 8999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHH----cCC--ChHHHHHHHHhCCCC
Q 010458 450 AGHVSTEIYNSLLRTYAK----AGK--MPLIIVERMQKDNVQ 485 (510)
Q Consensus 450 ~~~~~~~~~~~l~~~~~~----~g~--~a~~~~~~m~~~~~~ 485 (510)
.+ ++..+..|...|.. .++ +|...|++..+.+..
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 76 67889999999998 677 899999999887643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-17 Score=163.79 Aligned_cols=391 Identities=11% Similarity=0.022 Sum_probs=286.7
Q ss_pred HHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010458 94 CEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFL 172 (510)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 172 (510)
|+...+.+ |.+...|..++.. .+.|++++|..+|+++.+..| +...|..++..+.+.|++++|..+|++..+..
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555554 6788899988884 788999999999999999877 47889999999999999999999999999865
Q ss_pred CCcchHHHHHHHH-HhCCCcCcHHH----HHHHHHhC---CCCChhHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 010458 173 KCPLPYNHMLNLY-ISNGQLDKVPQ----MLQELKKN---TSPDVVTYNLWLAACAS---------QNDKETAEKAFLEL 235 (510)
Q Consensus 173 p~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m 235 (510)
|+...|..++... ...|+.++|.+ +|+..... .+++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777888777533 45788888776 77766554 23467788888877655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHHH------cc---CCCC--------hhhHHHH
Q 010458 236 KKTKIDPDWISYSTLTSLY-------------IKMELPEKAATTLKEMEK------RT---CRKN--------RVAYSSL 285 (510)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~~~------~~---~~~~--------~~~~~~l 285 (510)
.+....+....|....... .+.+++..|..++.++.. .. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8732111123444332211 124567777777776332 11 2333 2345554
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhc
Q 010458 286 LSLYTNM----GYK----DEVLRIWKKMMSLFAKMNDAEYTCVISSLVK-------LGEFE-------KAENIYDEWESI 343 (510)
Q Consensus 286 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 343 (510)
+...... ++. +++..+|+++.... +.+...|..++..+.. .|+++ +|..+|+...+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4433222 232 47888999998863 2356778777777765 69987 899999999863
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-C
Q 010458 344 SGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC-Y-TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-D 420 (510)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~ 420 (510)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|+++.+. .| +
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~----~~~~ 389 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED----ARTR 389 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTCC
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----cCCc
Confidence 22346778899999999999999999999999986 343 2 57888899889999999999999999964 33 3
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC-CCCC--HHHHHHH
Q 010458 421 HRLITAAYNK-LEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDN-VQMD--AETQKVL 494 (510)
Q Consensus 421 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~-~~pd--~~t~~~l 494 (510)
...+...+.. +...|+.++|..+|++..+..|.++..|..++..+.+.|+ .|..+|++..+.+ ..|+ ...|...
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3344333322 3468999999999999999888899999999999999999 8999999998763 3443 2345444
Q ss_pred Hh
Q 010458 495 KI 496 (510)
Q Consensus 495 ~~ 496 (510)
+.
T Consensus 470 ~~ 471 (530)
T 2ooe_A 470 LA 471 (530)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-18 Score=167.86 Aligned_cols=389 Identities=13% Similarity=0.006 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc----c---CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC----
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQ----Y---DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK---- 136 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 136 (510)
+.....||.+...+...|++++|++.|++..+. . ..+....+|..+..+|...|++++|...++++.+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567999999999999999999999987653 1 11334457888999999999999999999876543
Q ss_pred -C---C-ChhhHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHH---HHhCCCcCcHHHHHHHHHhCC
Q 010458 137 -M---R-GPDTCSALLHSYVQ--NKKSAEAEALMEKMSECGFLKC-PLPYNHMLNL---YISNGQLDKVPQMLQELKKNT 205 (510)
Q Consensus 137 -~---~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~ 205 (510)
+ + .+.++.....++.. .+++++|+..|++..+.. |+ +..+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1 24566666655554 457999999999998865 44 4445555444 345688899999999988877
Q ss_pred CCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhh
Q 010458 206 SPDVVTYNLWLAACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVA 281 (510)
Q Consensus 206 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 281 (510)
+.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 7788888777666554 467889999999987664 456778889999999999999999999999987554 6667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 010458 282 YSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361 (510)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (510)
+..+..+|...+.... .. . ...........+..+.|...++...+.. +.+...+..+...|..
T Consensus 284 ~~~lg~~y~~~~~~~~---------~~--~-----~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVM---------NL--R-----ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---------hH--H-----HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 7777766643211110 00 0 0000011112234567788888777654 3356677788888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHH
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYT--TWELLTW-GYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDID 438 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 438 (510)
.|++++|...|++..+....|... .+..+.. .....|++++|+..|+++++. .|+..... +...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i----~~~~~~~~---------~~~~ 413 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI----NQKSREKE---------KMKD 413 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS----CCCCHHHH---------HHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CcccHHHH---------HHHH
Confidence 888888888888888764332221 1222222 234678888888888888853 45543222 2234
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHhCC-CCCCHHH
Q 010458 439 GAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQKDN-VQMDAET 490 (510)
Q Consensus 439 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~-~~pd~~t 490 (510)
.+.+++++..+.+|.++.+|+.+...|...|+ +|++.|++..+.+ ..|+..+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 45666777777777778888888888888887 8888888877643 3455443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=170.12 Aligned_cols=257 Identities=16% Similarity=0.042 Sum_probs=181.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44556777777777777777777777776653 345667777777777777777777777777776433 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CCcchHHHHHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMSLFAKM---------NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GDPRVPNILLA 357 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 357 (510)
+|...|++++|...++++....... ....+..+...+...|++++|...++++.+..+. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7777777777777777776642110 0112233466777888888888888888875433 15667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCH
Q 010458 358 AYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437 (510)
Q Consensus 358 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 437 (510)
.|...|++++|...|+++.+..+ .+..+|..+...|...|++++|+..|+++++. .+.+..++..+..+|.+.|++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCH
Confidence 88888888888888888887643 36778888888888888888888888888863 233477888888888888888
Q ss_pred HHHHHHHHHHHhCCCC------------CHHHHHHHHHHHHHcCC
Q 010458 438 DGAEHLLVTLRNAGHV------------STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 438 ~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~ 470 (510)
++|...|+++.+..+. +..+|..+..++...|+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 8888888888765543 25678888888888887
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-19 Score=166.92 Aligned_cols=268 Identities=13% Similarity=0.049 Sum_probs=189.8
Q ss_pred cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 175 PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLY 254 (510)
Q Consensus 175 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 254 (510)
...|..+...+.+.|++++|...|+++.+..+.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34466666666666666666666666666555566667777777777777777777777766543 33466677777777
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Q 010458 255 IKMELPEKAATTLKEMEKRTCRKNR----------VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-NDAEYTCVISS 323 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 323 (510)
...|++++|...|+++.+..+. +. ..+..+...+...|++++|..+++++....... +..++..+...
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 7777777777777777665322 12 223345778888888999999999888764321 46778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+..+. +..++..+...|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999888754 336778889999999999999999999998886432 577888999999999999999
Q ss_pred HHHHHHHhhccCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 404 LECFKKAIGSVRKWVP---------DHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 404 ~~~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
...|+++++..+.... +..+|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998864211111 257889999999999999988877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-17 Score=160.06 Aligned_cols=329 Identities=10% Similarity=-0.026 Sum_probs=216.5
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccC---------CC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC---
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDK---------MR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECG--- 170 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 170 (510)
+.....|+.+..++...|++++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888999999999999988876442 22 24678888889999999999998888765421
Q ss_pred ---CCC-CcchHHHHHHHHHhC--CCcCcHHHHHHHHHhCCCCChhHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCC
Q 010458 171 ---FLK-CPLPYNHMLNLYISN--GQLDKVPQMLQELKKNTSPDVVTYNLWLAAC---ASQNDKETAEKAFLELKKTKID 241 (510)
Q Consensus 171 ---~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~ 241 (510)
..+ ...++..+..++... +++++|++.|++..+..+.+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 011 223455555555443 4678888888888777666666666665553 34566777888888776653 3
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH
Q 010458 242 PDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (510)
.+...+..+...+.. .|++++|.+.+++.....+. +...+..+...|...|++++|...++++.+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 345556555555444 45677888888888776544 6677888888888888888888888888775322 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (510)
..+..+|...+... .... . ..........+..+.|...+++..+.++. +...+..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 55554443211110 0000 0 00111112233468899999998886533 556788899999999
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHH----HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHR----LITAAYN-KLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
|++++|++.|+++++. .|+.. .+..+.. .....|++++|+..|++..+..+.+..
T Consensus 348 ~~~~~A~~~~~kaL~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp TCHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred ccHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 9999999999999975 33332 2333333 245789999999999999999887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=168.41 Aligned_cols=284 Identities=9% Similarity=0.074 Sum_probs=104.7
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEAL 162 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (510)
+.|+.++|.++++++. .+.+|..++.++.+.|++++|++.|.+. +|+..|..++..+...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4466777777777762 2347777777777777777777777553 3566777777777777777777776
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010458 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242 (510)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 242 (510)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 6655553 3456667777777777777777665553 356667777777777777777777777765
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 25777777777777777777777776 1667777777777777777777544433 1123333445667
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHHHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT-KGIKP------CYTTWELLTWGYL 395 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~l~~~~~ 395 (510)
.|.+.|.+++|..+++...... .-....|+.+..+|++- ++++..+.++.... .+++| +...|..+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766433 23344566666666543 23333333322222 22222 2345666677777
Q ss_pred hcCCHHHHHHHH
Q 010458 396 KKGQMEKVLECF 407 (510)
Q Consensus 396 ~~~~~~~a~~~~ 407 (510)
+.++++.|....
T Consensus 294 ~~~e~d~A~~tm 305 (449)
T 1b89_A 294 KYEEYDNAIITM 305 (449)
T ss_dssp HTTCHHHHHHHH
T ss_pred hhchHHHHHHHH
Confidence 777777666543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-19 Score=162.23 Aligned_cols=370 Identities=10% Similarity=0.060 Sum_probs=169.8
Q ss_pred hcccCCcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHH
Q 010458 48 LVYAKRSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAE 127 (510)
Q Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 127 (510)
.+.+-++|.+.++++ +++..|..++.++.+.|++++|++.|.+. +++..|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 333347888888886 23458999999999999999999999652 46779999999999999999999
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC
Q 010458 128 NFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP 207 (510)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 207 (510)
.+++...+..+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 9999888776778889999999999999999998885 278889999999999999999999999977
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHH
Confidence 47999999999999999999999988 268999999999999999999966555432 24444557899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhccCCC------CcchHHHHHHHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL--GEFEKAENIYDEWESISGTG------DPRVPNILLAAY 359 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~ 359 (510)
.|.+.|++++|..+++...... +.....|+-+.-++++- ++..+..+.|..- .+++| +...|..+...|
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 33456677776666653 3444444444321 22222 567899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 360 INRNQLEMAESFYNRLVTKG-----------IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~-----------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...++++.|....-+-.... ...+...|-..+..|.. ..+ .++.-+...+.. .+ |. +.++
T Consensus 293 ~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~-~~p-~~l~~ll~~l~~--~l--d~---~r~v 363 (449)
T 1b89_A 293 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE-FKP-LLLNDLLMVLSP--RL--DH---TRAV 363 (449)
T ss_dssp HHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-HCG-GGHHHHHHHHGG--GC--CH---HHHH
T ss_pred HhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-cCH-HHHHHHHHHHHh--cc--Cc---HHHH
Confidence 99999998877432211110 01133344444444441 111 112222222211 11 11 3344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
..+.+.|+..-+...+..+...+ +..+-.++-..|...++
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~n--~~~vnealn~l~ieeed 403 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhh
Confidence 55667777777777776666543 33344444444555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=159.37 Aligned_cols=278 Identities=12% Similarity=-0.042 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
+...+..+...+...|++++|+.+|+.+.+.. |.++..+..++..+...|++++|...++++.+..| +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34456677777888888888888888887764 56777788888888888888888888888777665 4677778888
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHH-HH-HHHhcCCHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLW-LA-ACASQNDKE 226 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 226 (510)
.+...|++++|.+.++++.+.... +...+..+.... |+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD---------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC-----------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH---------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 888888888888888888775422 222333221000 000111111 11 244455556
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (510)
+|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666655554442 224455555555666666666666666665554322 44555556666666666666666666655
Q ss_pred HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----------CcchHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 307 SLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTG-----------DPRVPNILLAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (510)
+.. +.+...+..+..++...|++++|...++++.+..+.. +...+..+..++...|+.++|..++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 542 1234455555556666666666666666655433221 244555666666666666666666554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-18 Score=156.15 Aligned_cols=261 Identities=11% Similarity=-0.030 Sum_probs=156.8
Q ss_pred HHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 178 YNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM 257 (510)
Q Consensus 178 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 257 (510)
+..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|...++++.+.. +.+..++..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444444433344444455555555555555555555544432 22344455555555555
Q ss_pred CChHHHHHHHHHHHHccCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 258 ELPEKAATTLKEMEKRTCRKNRVAYSSL--------------LS-LYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 258 g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
|++++|.+.++++.+..+. +...+..+ .. .+...|++++|..+++++..... .+...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 5555555555555544222 22222222 22 35566777777777777766532 24566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHH
Confidence 7777777777777777777543 23456677777778888888888888887776542 256677777888888888888
Q ss_pred HHHHHHHHhhccCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPD-------------HRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
|.+.++++.+. .|+ ..++..+..++.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYM----QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHH----HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHh----CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888887754 233 567777888888888888888777643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-17 Score=148.45 Aligned_cols=246 Identities=11% Similarity=0.091 Sum_probs=117.3
Q ss_pred HHHhcChhhHHHHHHhcccCCCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 117 ISKIRGLSSAENFFENLPDKMRGP--DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 117 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
....|+++.|+..++......|+. .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 345566666666666555544432 2334455666666666666654432 1223444555555555555555555
Q ss_pred HHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 195 PQMLQELKKNT--SPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 195 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
++.++++.... +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555554431 22444455555555555555555555543 23444555555555555555555555555555
Q ss_pred ccCCCChhhHHH----HHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 010458 273 RTCRKNRVAYSS----LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD 348 (510)
Q Consensus 273 ~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 348 (510)
.. |+.. ... ++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...|+++.+.. +.+
T Consensus 159 ~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 159 QD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 42 2211 111 112222234455555555554443 22233444444444445555555555555444332 123
Q ss_pred cchHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 010458 349 PRVPNILLAAYINRNQLEM-AESFYNRLVT 377 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 377 (510)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444444444444444433 3344444444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-17 Score=145.29 Aligned_cols=259 Identities=12% Similarity=0.088 Sum_probs=146.5
Q ss_pred HHHHhCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 183 NLYISNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
+-....|+++.|+..++......+.+ ......+.++|...|+++.|...++. . -+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 33445666666666666543331111 22344456666666666666654432 1 2445556666666666666666
Q ss_pred HHHHHHHHHHHccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 262 KAATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 262 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554333 344455555666666666666666665 234455666666666666666666666666
Q ss_pred HhccCCCCcchH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 010458 341 ESISGTGDPRVP---NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW 417 (510)
Q Consensus 341 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 417 (510)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++++. .
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~ 230 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---D 230 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 6543 332111 112222333466666666666666653 235556666666666666666666666666642 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCCCCCHHH
Q 010458 418 VPDHRLITAAYNKLEEQGDIDG-AEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 418 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 457 (510)
+-+..++..++..+...|+.++ +.++++++.+.+|.++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 3345566666666666666654 456666666666655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-15 Score=150.94 Aligned_cols=353 Identities=12% Similarity=0.101 Sum_probs=260.6
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccC-cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYD-IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALL 147 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 147 (510)
.++.-....+++|...|.+.+|+++++++...+. +..+...-+.++....+. +.....++.++.... + ...+.
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~eIA 1056 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---APDIA 1056 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HHHHH
Confidence 3555567778888888999999999988874421 112223333344444444 344444444444321 1 33467
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKET 227 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 227 (510)
..+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHHH
Confidence 778889999999999988531 1122233322 6788889988888662 57888899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 99999653 466788889999999999999999998877764 34334445889999998888644442 1
Q ss_pred hcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 308 LFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTW 387 (510)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 387 (510)
.++...|..+...|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 345566777889999999999999999875 378899999999999999999998762 66889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 388 ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 388 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
..+..+|...|++..|..+.... ..++..+..++..|.+.|.+++|..+++.....++.....|+-|...|++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 99999999999999888877643 23667777899999999999999999999988876677889888888888
Q ss_pred cCC----ChHHHHH
Q 010458 468 AGK----MPLIIVE 477 (510)
Q Consensus 468 ~g~----~a~~~~~ 477 (510)
... ++.++|.
T Consensus 1327 y~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1327 FKPQKMREHLELFW 1340 (1630)
T ss_pred CCHHHHHHHHHHHH
Confidence 766 4444444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-14 Score=150.34 Aligned_cols=306 Identities=16% Similarity=0.134 Sum_probs=147.3
Q ss_pred hcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHH
Q 010458 120 IRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQ 199 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 199 (510)
.+++++|.++.++.. ++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|.
T Consensus 1089 i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444331 2444455555555555555555554331 234444445555555555555555554
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh
Q 010458 200 ELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR 279 (510)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 279 (510)
...+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1159 mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1159 MARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred HHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 443332 11111222444444544444322221 1 223334444555555555555555555543
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAY 359 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (510)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYY 1290 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHH
Confidence 24455555555555555555555443 13344555555555555555554443321 22334455666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhccCCCCC------CHHHHHHHHHHH
Q 010458 360 INRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK--GQMEKVLECFKKAIGSVRKWVP------DHRLITAAYNKL 431 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~p------~~~~~~~l~~~~ 431 (510)
.+.|.+++|+.+++..+... +-....|.-+...|++- ++..++.++|..-. +++| +...|..+.-.|
T Consensus 1291 e~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri----ni~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV----NIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----ccchHhHHHHHHHHHHHHHHHH
Confidence 77777777777776665543 22334454555555442 23334444444332 2222 345677777777
Q ss_pred HHcCCHHHHHHHH-------------HHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 432 EEQGDIDGAEHLL-------------VTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 432 ~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
.+.|+++.|.... ++.. ..+.+++.|...+.-|...+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i-~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDII-TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHh-cccccHHHHHHHHHHHHhhC
Confidence 7777777776222 1111 12336677777777776655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-16 Score=139.61 Aligned_cols=238 Identities=11% Similarity=0.038 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC--C----hhhH
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK--N----RVAY 282 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 282 (510)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...+++..+..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777766655 556667777777777777777777777766653221 1 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 010458 283 SSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINR 362 (510)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (510)
..+...+...|++++|...++++.... |+ ...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 777777777777777777777776642 33 134555667777777777776543 22445566677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
|++++|...++++.+.... +...+..+...+...|++++|...++++++. .+.+...+..+..++.+.|++++|..
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777777777765432 5667777777777777777777777777753 23346677777777777777777777
Q ss_pred HHHHHHhCC------CCCHHHHHHHH
Q 010458 443 LLVTLRNAG------HVSTEIYNSLL 462 (510)
Q Consensus 443 ~~~~~~~~~------~~~~~~~~~l~ 462 (510)
.++++.+.. |.+..++..+.
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHH
Confidence 777776665 44444444443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-16 Score=150.04 Aligned_cols=346 Identities=15% Similarity=0.082 Sum_probs=241.5
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh---hhHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL---SSAENFFENLPDKMRGPDTCSALLHSYVQ 152 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (510)
.+...+.+.|++++|++.|+...+.+ ++..+..+..++...|+. ++|...|++..+. ++..+..+...+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 36677888999999999999998765 456666777777778888 8999999999876 77778888876665
Q ss_pred CC-----CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCc---HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010458 153 NK-----KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDK---VPQMLQELKKNTSPDVVTYNLWLAACASQND 224 (510)
Q Consensus 153 ~~-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (510)
.+ ++++|...|++..+.| +...+..|...|...+..++ +.+.+...... .+......+...|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 55 7899999999999876 44478888888887766544 44444444332 245667778888888875
Q ss_pred HH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc----C
Q 010458 225 KE----TAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM----G 293 (510)
Q Consensus 225 ~~----~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 293 (510)
++ .+..+++..... .|+ .+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 54 444445444332 233 7888999999999 999999999999998754 666667788888665 7
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-----CH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISS-L--VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRN-----QL 365 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 365 (510)
++++|..+|++.. .| +...+..+... + ...+++++|...|++..+.+ +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999986 32 45566666665 3 46899999999999998765 6677788888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCH
Q 010458 366 EMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDI 437 (510)
Q Consensus 366 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 437 (510)
++|..+|++.. .| +...+..+...|.. ..++++|..+|+++.+. + +......+...|.. ..+.
T Consensus 304 ~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 304 KAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--G---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp HHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--T---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred HHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--C---hHHHHHHHHHHHHhCCCCCCCH
Confidence 99999999988 43 66777778777766 44999999999999875 4 34455666666664 4589
Q ss_pred HHHHHHHHHHHhCCCCC
Q 010458 438 DGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 438 ~~A~~~~~~~~~~~~~~ 454 (510)
++|..+|+...+.|.+.
T Consensus 375 ~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 99999999999988653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-18 Score=167.38 Aligned_cols=163 Identities=8% Similarity=0.047 Sum_probs=123.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKK---TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSS 284 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 284 (510)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999987753 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC------cchHHHHHH
Q 010458 285 LLSLYTNMGY-KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD------PRVPNILLA 357 (510)
Q Consensus 285 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 357 (510)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. .+++..+++ ..+..|+ +.+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 477889999999999999999999888655443 233333333 2233333 445556666
Q ss_pred HHHhcC---------CHHHHHHHHHHH
Q 010458 358 AYINRN---------QLEMAESFYNRL 375 (510)
Q Consensus 358 ~~~~~g---------~~~~A~~~~~~~ 375 (510)
.|.+.+ ..++-...|++-
T Consensus 281 l~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HHCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HHccCCCCcCccccCCHHHHHHHHHHH
Confidence 666544 235555566543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=135.44 Aligned_cols=240 Identities=10% Similarity=-0.007 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--C----hhhH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM--N----DAEY 317 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 317 (510)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++++....... + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999999987 688999999999999999999999999998754321 2 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK 397 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (510)
..+..++...|++++|...|+++.+.. |+ ...+...|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 889999999999999999999998753 33 34567788999999999999986432 556788899999999
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHH
Q 010458 398 GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLII 475 (510)
Q Consensus 398 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~ 475 (510)
|++++|...++++.+. .+.+..++..+..++...|++++|...++++.+..+.++..|..+...+...|+ +|...
T Consensus 153 ~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999974 345688999999999999999999999999999998899999999999999999 89999
Q ss_pred HHHHHhCC----CCCCHHHHHHHHhhc
Q 010458 476 VERMQKDN----VQMDAETQKVLKITS 498 (510)
Q Consensus 476 ~~~m~~~~----~~pd~~t~~~l~~~~ 498 (510)
+++..+.. ..|+.......+..|
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 98887643 226665555555433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=167.35 Aligned_cols=166 Identities=10% Similarity=0.031 Sum_probs=134.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEMEK---RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEY 317 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (510)
..-..||++||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|...|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 010458 318 TCVISSLVKLGE-FEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC------YTTWELL 390 (510)
Q Consensus 318 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l 390 (510)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++.++++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 478999999999999999999999998765543 344444444 3344444 4455566
Q ss_pred HHHHHhcC---------CHHHHHHHHHHHh
Q 010458 391 TWGYLKKG---------QMEKVLECFKKAI 411 (510)
Q Consensus 391 ~~~~~~~~---------~~~~a~~~~~~~~ 411 (510)
...|.+.+ ..++-.+.|++=+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 66676655 2345555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-16 Score=134.74 Aligned_cols=198 Identities=12% Similarity=0.027 Sum_probs=99.8
Q ss_pred ccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 010458 104 KLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHML 182 (510)
Q Consensus 104 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 182 (510)
|+++..+..+...+...|++++|...|+++.+..| ++..+..+...+.+.|++++|+..|++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 34445555555555555555555555555555544 245555555555555555555555555555431 1333445555
Q ss_pred HHHHhC-----------CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 183 NLYISN-----------GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLT 251 (510)
Q Consensus 183 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 251 (510)
.++... |++++|+..|++..+..+.+..++..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 555544 555555555555555444455555555556666666666666666655544 4455555556
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
.++...|++++|+..|++..+..+. +...+..+...+...|++++|+..+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665555333 4455555555555666666665555543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-15 Score=133.30 Aligned_cols=231 Identities=13% Similarity=0.059 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTCSALLH 148 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~ 148 (510)
.+......+...|++++|+..|+.+.+.. |.++..+..+...+...|++++|+..++++.+..+++ .+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34445555566666666666666665543 4445555566666666666666666666555532222 22555555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
.+...|++++|...|++..+... .+..+|..+...+...|++++|.+.|++..+..+.+..++..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555431 13445555555555555555555555555554444455555555222233355555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcc-CCCC------hhhHHHHHHHHHhcCCHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMEL---PEKAATTLKEMEKRT-CRKN------RVAYSSLLSLYTNMGYKDEV 298 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~a 298 (510)
.+.|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555554432 2224444445555555554 444555555544331 0111 12444445555555555555
Q ss_pred HHHHHHHHH
Q 010458 299 LRIWKKMMS 307 (510)
Q Consensus 299 ~~~~~~~~~ 307 (510)
...++++.+
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-15 Score=133.32 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=156.0
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcch----HHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLP----YNH 180 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~ 180 (510)
++..+......+...|++++|+..|+++.+..|+ ...+..+...+...|++++|+..+++..+.+ ++... |..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 3455666677777888888888888887777664 5577777788888888888888888877743 23332 677
Q ss_pred HHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010458 181 MLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELP 260 (510)
Q Consensus 181 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 260 (510)
+...+...|++++|.+.|++..+..+.+..++..+..++...|++++|...|++..+.. +.+...+..+...+...+++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 77777888888888888887777666677777777788888888888888887776652 34556666666334444577
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHhc-CCCCh------hhHHHHHHHHHhcCCH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY---KDEVLRIWKKMMSLF-AKMND------AEYTCVISSLVKLGEF 330 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~------~~~~~l~~~~~~~~~~ 330 (510)
++|.+.|+++.+..+. +...+..+..++...++ +++|...++++.+.. ..|+. ..|..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 7777777777776433 45666666667666666 666777777665542 11221 3455555555666666
Q ss_pred HHHHHHHHHHHhc
Q 010458 331 EKAENIYDEWESI 343 (510)
Q Consensus 331 ~~a~~~~~~~~~~ 343 (510)
++|.+.++++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-15 Score=137.51 Aligned_cols=251 Identities=12% Similarity=0.064 Sum_probs=184.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHccCCCChhhHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL-PEKAATTLKEMEKRTCRKNRVAYSSLL 286 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 286 (510)
+..+|+.+..++...|++++|+..++++.+.. +-+...|+.+..++...|+ +++|+..|+++.+..+. +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 44567777777777778888888887776653 3356677777777777775 88888888888777555 667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh-cCCH
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQL 365 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 365 (510)
.++...|++++|+..|+++...... +...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888887775322 4566777777777888888888888887765533 56677777777777 5554
Q ss_pred HHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC---
Q 010458 366 EMA-----ESFYNRLVTKGIKPCYTTWELLTWGYLKKG--QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG--- 435 (510)
Q Consensus 366 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--- 435 (510)
++| +..|++.++..+. +...|..+...+...| ++++|++.+.++ + ..+.+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~---~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q---PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T---TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c---cCCCCHHHHHHHHHHHHHHhccc
Confidence 666 4778888776433 5667888888888877 578888888887 3 44556778888888888764
Q ss_pred ------CHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHH
Q 010458 436 ------DIDGAEHLLVTL-RNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 436 ------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 467 (510)
.+++|.++++++ .+.+|.....|..+...+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999998 78887778888888777665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=130.51 Aligned_cols=197 Identities=18% Similarity=0.124 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 33344444444444444444444444444332 223344444444444444444444444444443322 3334444444
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 288 LYTNM-----------GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 288 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
++... |++++|+..+++..+..+. +...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 5555555555555443211 23344445555555555555555555555443 3444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKA 410 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 410 (510)
.+|...|++++|...|++..+..+. +...+..+...+...|++++|+..|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555555554322 3444555555555555555555555544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-13 Score=132.26 Aligned_cols=437 Identities=7% Similarity=0.028 Sum_probs=308.1
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC---hhhHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG---LSSAENF 129 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 129 (510)
.+....+++-+..+ +-|...|..++..+.+.+.++.+..+|+.+... +|.....|...+..-.+.|. ++.+.++
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 66677777777776 679999999999999999999999999999987 58888899999999888898 9999999
Q ss_pred HHhcccCC---CChhhHHHHHHHHHhCCCH--------HHHHHHHHHHHh-CCC-CCC-cchHHHHHHHHHh--------
Q 010458 130 FENLPDKM---RGPDTCSALLHSYVQNKKS--------AEAEALMEKMSE-CGF-LKC-PLPYNHMLNLYIS-------- 187 (510)
Q Consensus 130 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~~-------- 187 (510)
|++..... |++..|...+....+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99999887 7888898888766655543 344577877554 455 454 3577777765442
Q ss_pred -CCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----
Q 010458 188 -NGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACAS-------------QNDKETAEKAFLELKK--TKI----D----- 241 (510)
Q Consensus 188 -~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~--~~~----~----- 241 (510)
.++.+.+..+|++.......+ ..+|......... ..+++.|...+.++.. .++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 234677888998887531112 2344322222111 1233445555554321 111 1
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH-
Q 010458 242 ------P-----D---WISYSTLTSLYIKME-------LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL- 299 (510)
Q Consensus 242 ------~-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 299 (510)
| + ...|...+..--..+ ..+.+..+|++.....+. +...|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 134555554333222 123456788888877443 7888988888888999999997
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC---------CCC------------cchHHHHHHH
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG---------TGD------------PRVPNILLAA 358 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~ 358 (510)
.+|+..... .+.+...+...+....+.|+++.|.++|+.+.+... .|+ ..+|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 333555567778888899999999999999886310 132 2357777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCH
Q 010458 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK-GQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDI 437 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 437 (510)
..+.|+.+.|..+|.++.+.-..+....|...+..-.+. ++.+.|.++|+.+++ .++-+...+...+......|+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk---~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK---YFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHhCCCH
Confidence 888999999999999998761122334444333333344 458999999999997 3445677778888888899999
Q ss_pred HHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCHHHHHHHHhhcC
Q 010458 438 DGAEHLLVTLRNAGHV---STEIYNSLLRTYAKAGK--MPLIIVERMQKDNVQMDAETQKVLKITSE 499 (510)
Q Consensus 438 ~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~--~a~~~~~~m~~~~~~pd~~t~~~l~~~~~ 499 (510)
+.|+.+|++.....++ ....|...+.--.+.|+ .+..+.+++.+.- |+......+..-+.
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHhc
Confidence 9999999999988773 46789999999999999 7888999998753 55455555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-14 Score=125.69 Aligned_cols=210 Identities=12% Similarity=-0.021 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
...+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++..... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 345566666677777777777777777665433 556667777777777777777777777766532 244566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776521222 345566777777788888888888887776543 256677778888888888888
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
|...++++.+ ..+.+...+..+...+...|++++|.+.++++.+..+.++....
T Consensus 194 A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888888775 33455667777777888888888888888888877776655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-13 Score=123.77 Aligned_cols=226 Identities=15% Similarity=0.027 Sum_probs=153.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYS 283 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 283 (510)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5556666777777777777777777776663 244566667777777 777777777777776653 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcchHHHH
Q 010458 284 SLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNIL 355 (510)
Q Consensus 284 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 355 (510)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777776653 45566666666666 777777777777776643 44556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 356 LAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 356 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+.+|+++.+. + +...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E---NGGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T---CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--C---CHHHHHHH
Confidence 666666 677777777777777653 45666667777777 77777777777777753 2 25566666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCC
Q 010458 428 YNKLEE----QGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 428 ~~~~~~----~g~~~~A~~~~~~~~~~~~~ 453 (510)
...|.+ .+++++|.+.|++..+.++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 677776 77777777777777766654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-14 Score=121.39 Aligned_cols=210 Identities=12% Similarity=0.055 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
...+..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|..+++++.... +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445556666666666666666666666665332 45566666666666666666666666666542 2244556666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 010458 324 LVKL-GEFEKAENIYDEWESISGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401 (510)
Q Consensus 324 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (510)
+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 6666 77777777777666521112 2345666666777777777777777777665322 4566777777777777777
Q ss_pred HHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 402 KVLECFKKAIGSVRKWV-PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
+|...++++.+. .+ .+...+..+...+...|+.+.|..+++.+.+..|.++....
T Consensus 165 ~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 777777777653 22 35566666666677777777777777777766666555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=135.54 Aligned_cols=229 Identities=9% Similarity=-0.029 Sum_probs=143.9
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCC-HHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKK-SAEAEALMEKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 184 (510)
...|..+..++...|++++|+..++++....|+ ..+|+.+..++...|+ +++|+..|++..+.... +...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345566666666667777777777776666553 5666666667777775 77777777777665422 45566667777
Q ss_pred HHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHH
Q 010458 185 YISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-MELPEKA 263 (510)
Q Consensus 185 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 263 (510)
+...|++++|+..|+++.+..+.+..+|..+..++...|++++|+..++++++.. +.+...|+.+..++.+ .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 7777777777777777766666666777777777777777777777777766654 2355666666666666 4444555
Q ss_pred -----HHHHHHHHHccCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC--------
Q 010458 264 -----ATTLKEMEKRTCRKNRVAYSSLLSLYTNMG--YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-------- 328 (510)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 328 (510)
+..|++.....+. +...|..+...+...| ++++|++.+.++ +. ...+...+..+..++.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 3666666665444 5556666666666665 466666666665 21 2223345556666665543
Q ss_pred -CHHHHHHHHHHH
Q 010458 329 -EFEKAENIYDEW 340 (510)
Q Consensus 329 -~~~~a~~~~~~~ 340 (510)
..++|.++++.+
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 135666666666
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=129.80 Aligned_cols=212 Identities=11% Similarity=0.060 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSL 324 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (510)
..|..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++..... .+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 34445555555566666666666665554322 455555556666666666666666666555421 2344555556666
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010458 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665543 22445566666677777777777777777666532 25566777777777777777777
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
..++++.+. .+.+..++..+..++...|++++|...++++.+..+.+...+..+..
T Consensus 180 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 180 SQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 777777753 23456677777777788888888888888887777776666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=139.75 Aligned_cols=366 Identities=11% Similarity=0.032 Sum_probs=248.8
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCh---HHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-----Chh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY---KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-----GLS 124 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~ 124 (510)
++|.+.|++..+.| ++.++..+...+...|++ ++|+..|+...+. ++..+..+..++...+ +.+
T Consensus 20 ~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 20 VTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 89999999988877 344556666677778888 8999999988743 6677777777555544 788
Q ss_pred hHHHHHHhcccCCCChhhHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHH
Q 010458 125 SAENFFENLPDKMRGPDTCSALLHSYVQNKKSA---EAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQEL 201 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 201 (510)
+|...|++..+.++ +..+..|...|...+..+ ++.+.+......| ++..+..|...|...+.++++.+....+
T Consensus 92 ~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 92 EAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 99999999887643 447777888887766544 3455555555544 5678888899999988887777665555
Q ss_pred HhC-CCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHc
Q 010458 202 KKN-TSPDVVTYNLWLAACASQN---DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM----ELPEKAATTLKEMEKR 273 (510)
Q Consensus 202 ~~~-~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 273 (510)
.+. ...+..++..+...|...| +.++|.+.|++..+.| .++...+..|...|... +++++|...|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 444 3335558889999999999 9999999999998887 46666666778777665 79999999999987 3
Q ss_pred cCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhccC
Q 010458 274 TCRKNRVAYSSLLSL-Y--TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLG-----EFEKAENIYDEWESISG 345 (510)
Q Consensus 274 ~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~ 345 (510)
-+...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|++..
T Consensus 246 ---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 246 ---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp ---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 256677777777 4 56899999999999998765 5666777777776 55 9999999999877
Q ss_pred CCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCC
Q 010458 346 TGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKW 417 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 417 (510)
..++..+..|...|.. ..+.++|..+|++..+.|. ......+...|.. ..++.+|..+|+.+.+. +.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~--g~ 389 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ--DT 389 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--CC
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 3366777778877776 3499999999999998763 3455566666654 46899999999999875 42
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 418 VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 418 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
++.......+......++..+|..+.++..+
T Consensus 390 -~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 -PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp -HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2222222222222233456677777766544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=126.76 Aligned_cols=200 Identities=7% Similarity=-0.105 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHS 149 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 149 (510)
...|..+...+...|++++|++.|+.+.+.. |.++..+..+...+...|++++|.+.++++.+..| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 4456666667777777777777777776653 45566666666777777777777777776665544 35566666666
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.+++..+..+.+..++..+..++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666777777777776666522222 2344555556666666666666666665555444555566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655432 234445555555566666666666666665554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=133.49 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..+..+...+...|++++|...|++++
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444455555555555555554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-14 Score=122.81 Aligned_cols=201 Identities=8% Similarity=-0.060 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
+...|..+...+...|++++|+..|+.+.+.. |.++..+..++..+...|++++|.+.++++....| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34455666666666666666666666666553 44555666666666666666666666666555444 3455555666
Q ss_pred HHHhC-CCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 149 SYVQN-KKSAEAEALMEKMSECGFLKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 149 ~~~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+.+...+..+..++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 66666 666666666666555211111 2344444455555555555555555544443334444444444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
+|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555554443332112333444444444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-15 Score=130.32 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLH 148 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 148 (510)
+...|..+...+...|++++|+..|+.+.+.. |.+...+..+...+...|++++|...++++.+..| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 33445555555555566666666666555542 44455555555555555555555555555544433 2445555555
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
.+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+..+.+...+..+..++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555554331 13334444444445555555555555544444333444444444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 44444443332 123334444444444444444444444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-13 Score=122.83 Aligned_cols=241 Identities=11% Similarity=-0.036 Sum_probs=178.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 221 SQNDKETAEKAFLELKKTKID---PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
..|++++|...++++.+.... .+..++..+...+...|++++|...|+++.+..+. +...|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 457788888888888765321 23566778888888888888888888888887544 67788888888888899999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 298 VLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVT 377 (510)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 377 (510)
|...++++..... .+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999888887532 256778888888888999999999998888653 3433444445555677899999999988777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 378 KGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 378 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
... ++...+ .++..+...++.++|+..+.++........| +..++..+..++.+.|++++|...|+++.+.+|.+..
T Consensus 173 ~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 532 344444 4677778888889999999998864111111 1578889999999999999999999999998876633
Q ss_pred HHHHHHHHHHHcCC
Q 010458 457 IYNSLLRTYAKAGK 470 (510)
Q Consensus 457 ~~~~l~~~~~~~g~ 470 (510)
.+ ..++...|+
T Consensus 251 ~~---~~~~~~l~~ 261 (275)
T 1xnf_A 251 EH---RYALLELSL 261 (275)
T ss_dssp HH---HHHHHHHHH
T ss_pred HH---HHHHHHHHH
Confidence 33 444455555
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-12 Score=117.25 Aligned_cols=222 Identities=13% Similarity=-0.010 Sum_probs=196.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCChhhHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYT 318 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (510)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888999999999999999999999883 356788889999999 999999999999998865 677888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010458 319 CVISSLVK----LGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELL 390 (510)
Q Consensus 319 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 390 (510)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88999999 999999999999998764 67788899999999 999999999999999975 56778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 391 TWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 391 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
...|.. .+++++|+.+|+++.+. .+...+..+...|.. .+++++|...+++..+.++ +..+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHH
Confidence 888888 99999999999999975 356888889999999 9999999999999998864 77888999
Q ss_pred HHHHH----cCC--ChHHHHHHHHhCC
Q 010458 463 RTYAK----AGK--MPLIIVERMQKDN 483 (510)
Q Consensus 463 ~~~~~----~g~--~a~~~~~~m~~~~ 483 (510)
..|.. .++ +|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99998 777 8999999998865
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=137.62 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=139.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGY--------------------KDEVLR 300 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 300 (510)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444555555555555555555554432110 01 2245555556666666 666666
Q ss_pred HHHHHHHhc--C--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----cchHHHHHHHHHhcCCHHHHHH
Q 010458 301 IWKKMMSLF--A--KM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAES 370 (510)
Q Consensus 301 ~~~~~~~~~--~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 370 (510)
.+++..... . .+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 666554321 0 11 1234666666777777777777777776643211 11 2256777778888888888888
Q ss_pred HHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 010458 371 FYNRLVTKGIK-PC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAE 441 (510)
Q Consensus 371 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 441 (510)
.+++..+.... ++ ..++..+...|...|++++|...++++.+.... .++ ..++..+..+|...|++++|.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877642111 11 446778888888899999999999888763111 112 557778888899999999999
Q ss_pred HHHHHHHhCCC----C--CHHHHHHHHHHHHHcCC
Q 010458 442 HLLVTLRNAGH----V--STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 442 ~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~ 470 (510)
..+++..+... . ...++..+...+...|+
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99988765421 1 35678888888888886
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=137.23 Aligned_cols=96 Identities=10% Similarity=-0.099 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh----hhHHHHHHHHHHhcChhhHHHHHHhcccC----C--C-
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS----GDYAVHLDLISKIRGLSSAENFFENLPDK----M--R- 138 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~- 138 (510)
....+......+...|++++|+..|+.+.+.. |.++ ..+..+...+...|++++|...++++... + +
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34444555555555566666666665555542 2221 23444455555555555555555543222 0 0
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010458 139 GPDTCSALLHSYVQNKKSAEAEALMEKMS 167 (510)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (510)
...++..+...+...|++++|...+++..
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12334444444444555555555444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=135.66 Aligned_cols=279 Identities=15% Similarity=0.094 Sum_probs=159.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc-----chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHH
Q 010458 142 TCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP-----LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWL 216 (510)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 216 (510)
.+..+...+...|++++|...|+++.+.+ |+. ..|..+...|...|++++|...+++..+..
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA----------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------
Confidence 34445556666777777777777666643 222 245555555555566666666555544320
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-----CCCChhhHHHHHHHHH
Q 010458 217 AACASQNDKETAEKAFLELKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-----CRKNRVAYSSLLSLYT 290 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 290 (510)
...+. ......+..+...|...|++++|...+++..+.. ......++..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 00000 1112233444444444455555444444443320 0112234455555555
Q ss_pred hcCC-----------------HHHHHHHHHHHHHhc----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-C
Q 010458 291 NMGY-----------------KDEVLRIWKKMMSLF----AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-G 347 (510)
Q Consensus 291 ~~~~-----------------~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 347 (510)
..|+ +++|...+++..... ..+ ....+..+...+...|++++|...+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 555555555543321 001 1134556666677777777777777766543211 1
Q ss_pred C----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-
Q 010458 348 D----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIK-----PCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW- 417 (510)
Q Consensus 348 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 417 (510)
+ ...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|..++++++......
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 125667777888888888888888877653110 114567788888899999999999998887641111
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 418 --VPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 418 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
.....++..+..+|...|++++|...+++..+...
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11134777888899999999999999999887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=138.25 Aligned_cols=239 Identities=12% Similarity=-0.005 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccCh----hhHHHHHHHHHHhcChhhHHHHHHhcccC------CC-Ch
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVS----GDYAVHLDLISKIRGLSSAENFFENLPDK------MR-GP 140 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~ 140 (510)
..+..+...+...|++++|+..|+.+.+.. |.++ ..+..+...+...|++++|...++++.+. .+ ..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 334455566666777777777777766653 2333 34556666666667777766666665432 01 13
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.++..+...|...|++++|...+++..+..... ++ .+....++..+...+.
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~--------------~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQL---------------GD--------------RLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------TC--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------hc--------------hHHHHHHHHHHHHHHH
Confidence 455555555666666666666655544320000 00 0002334445555555
Q ss_pred hcCC-----------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC-C
Q 010458 221 SQND-----------------KETAEKAFLELKKT----KI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-K 277 (510)
Q Consensus 221 ~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 277 (510)
..|+ +++|.+.+++..+. +. .....++..+...+...|++++|...+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 55555555443221 10 111234555666666666666666666665543111 0
Q ss_pred C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 278 N----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM-----NDAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 278 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
+ ..++..+...|...|++++|...+++........ ...++..+...+...|++++|...+++..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1245556666666666666666666554431110 01234444455555555555555555444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=132.45 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGI-----KPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+..+...+...|++++|...+++..+... .....++..+...|...|++++|...++++.+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444445555555555555554433100 00122444555555556666666666665554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=118.08 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHccCcccChhhHHHHHHHHHH-------hcCh-------hhHHHHHHhccc-CCCC-hhhHHHHHHHHH
Q 010458 88 KHALEVCEWMELQYDIKLVSGDYAVHLDLISK-------IRGL-------SSAENFFENLPD-KMRG-PDTCSALLHSYV 151 (510)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~-~~~~~~l~~~~~ 151 (510)
++|+..|+.+.... |.++..|...+..+.. .|++ ++|..+|++... ..|+ ...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67888899888864 7788888888877753 4775 788888888887 4564 567888888888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC-cc-hHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCCHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKC-PL-PYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA-SQNDKETA 228 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 228 (510)
..|++++|..+|++..+.. |+ .. .|..++..+.+.|++++|.++|++..+..+++...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888743 43 33 67777777777788888888888777765555555544433322 25777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 229 EKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT-CRK--NRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 229 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777765542 2356667777777777777777777777777652 233 3456666777777777777777777777
Q ss_pred HHh
Q 010458 306 MSL 308 (510)
Q Consensus 306 ~~~ 308 (510)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=126.85 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGY--------------------KDEVLR 300 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 300 (510)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 3445555555555555555555554432110 01 2245555556666666 666666
Q ss_pred HHHHHHHh----cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----cchHHHHHHHHHhcCCHHHHHH
Q 010458 301 IWKKMMSL----FAKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PRVPNILLAAYINRNQLEMAES 370 (510)
Q Consensus 301 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 370 (510)
.+++.... +..+ ....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66554332 1011 1234566666677777777777777776542211 11 2256677778888888888888
Q ss_pred HHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 371 FYNRLVTKGIK-PC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKW---VPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 371 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+++..+.... ++ ..++..+...+...|++++|...++++.+..... .....++..+...+.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88877642111 11 4467778888889999999999998887531111 1114467778888889999999999
Q ss_pred HHHHHHhCC
Q 010458 443 LLVTLRNAG 451 (510)
Q Consensus 443 ~~~~~~~~~ 451 (510)
.+++..+..
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 998887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-12 Score=113.60 Aligned_cols=220 Identities=9% Similarity=-0.047 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHH-ccCCCChhhHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYI-------KMELP-------EKAATTLKEMEK-RTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 290 (510)
++|..+|++..... +.+...|..++..+. +.|++ ++|..+|++..+ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45555565554432 234455555555543 23554 677777777766 2222 4456667777777
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCh-h-hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCHHH
Q 010458 291 NMGYKDEVLRIWKKMMSLFAKMND-A-EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYI-NRNQLEM 367 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 367 (510)
..|++++|..+|+++.+. .|+. . .|..++..+.+.|++++|..+|++..+..+ ++...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777663 3332 2 566666677777777777777777765432 23333433322211 2577777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010458 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK-WVP--DHRLITAAYNKLEEQGDIDGAEHLL 444 (510)
Q Consensus 368 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (510)
|..+|++..+..+. +...|..++..+.+.|++++|..+|++++.. . ++| ....|..++..+.+.|+.+.|..++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS--GSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS--SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87777777765322 5667777777777778888888888887763 2 344 3567777777777778888888888
Q ss_pred HHHHhCCCC
Q 010458 445 VTLRNAGHV 453 (510)
Q Consensus 445 ~~~~~~~~~ 453 (510)
+++.+..|.
T Consensus 265 ~~a~~~~p~ 273 (308)
T 2ond_A 265 KRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHccc
Confidence 877776665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-12 Score=124.20 Aligned_cols=231 Identities=9% Similarity=0.048 Sum_probs=167.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC------ChhhHH
Q 010458 215 WLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK------NRVAYS 283 (510)
Q Consensus 215 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 283 (510)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566677889999999999887653 1111 24567888888999999999999988877652111 134678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-h----hhHHHHHHHHHhcCCHHHHHHHHHHHHhc----cC-CCCcchHH
Q 010458 284 SLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-D----AEYTCVISSLVKLGEFEKAENIYDEWESI----SG-TGDPRVPN 353 (510)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 353 (510)
.+...|...|++++|...+++........+ . .++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988876422111 1 36777888888999999999999888762 22 22355678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCCCCHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKG----IKPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRLITA 426 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~~~~~~ 426 (510)
.+...|...|++++|...+++..+.. -......+..+...+...|+ +++|+.++++.. ..+.....+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----LYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----CHHHHHHHHHH
Confidence 88889999999999999998876531 11112235667777888888 778888887763 22334557778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999988765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.3e-13 Score=110.75 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
+.+|..+...|...|++++|++.|++..+.... +..+|..+..++.+.|++++|...+.......+.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 444444555555555555555555554443311 3334444444555555555555555544444444444455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
...++++.+...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 55555555555555544432 223444555555555555555555555555554332 4445555555555555555555
Q ss_pred HHHHHHHH
Q 010458 300 RIWKKMMS 307 (510)
Q Consensus 300 ~~~~~~~~ 307 (510)
..|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-13 Score=125.91 Aligned_cols=227 Identities=11% Similarity=-0.042 Sum_probs=112.5
Q ss_pred HHhccChHHHHHHHHHHHHcc-CcccChh--hHHHHHH--HHHHhcChhhHH-----------HHHHhcccCCCChh---
Q 010458 81 LRKLKRYKHALEVCEWMELQY-DIKLVSG--DYAVHLD--LISKIRGLSSAE-----------NFFENLPDKMRGPD--- 141 (510)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~~l~~--~~~~~g~~~~A~-----------~~~~~~~~~~~~~~--- 141 (510)
+.+.+++++|..+++++.+.- ....+.. .|..++. ...-.++++.+. +.++.+.....+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 456789999999999987642 1112332 2222222 122233344444 55555433211111
Q ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CC----CcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCC----
Q 010458 142 ---TCSALLHSYVQNKKSAEAEALMEKMSECGF-LK----CPLPYNHMLNLYISNGQLDKVPQMLQELKKN--TSP---- 207 (510)
Q Consensus 142 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---- 207 (510)
.+......+...|++++|...|++..+.-. .+ ...++..+...|...|++++|...+++..+. ..+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 122244556677777777777777665310 01 1234556666666666666666666665443 111
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----cC-C
Q 010458 208 -DVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKR----TC-R 276 (510)
Q Consensus 208 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~ 276 (510)
...+++.+..+|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1234555555555566666666555554321 1000 1124445555555555555555555555441 11 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 277 KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
....++..+...+...|++++|...+++...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1233445555555555555555555555433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-14 Score=134.88 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh-hhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHH
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL-SSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALME 164 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (510)
+++++..++...... +.+...+..+...+...|++ ++|++.|+++.+..|+ ...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555554432 44566666666666677777 7777777766666553 5666666777777777777777777
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhC---------CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------CCHHH
Q 010458 165 KMSECGFLKCPLPYNHMLNLYISN---------GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ--------NDKET 227 (510)
Q Consensus 165 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 227 (510)
+..+.. |+...+..+...+... |++++|++.|++..+..+.+...|..+..++... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 666654 5555666666666666 6666666666666665555666666666666666 66666
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010458 228 AEKAFLELKKTKID--PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIW 302 (510)
Q Consensus 228 a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 302 (510)
|...|++..+.... .+...|..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|++.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666554210 25556666666666666666666666666655433 4455556666666666666655544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-12 Score=107.47 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
...|..+...|.+.|++++|++.|++..+..+. +..++..+..+|...|++++|...+........ .+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 344555555555555555555555555554333 444455555555555555555555555444321 123334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKV 403 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 403 (510)
+...++++.+...+.+..+.. +.+...+..+..+|...|++++|+..|++..+..+. +...|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 444555555555555444332 123344444445555555555555555555443221 344444555555555555555
Q ss_pred HHHHHHHh
Q 010458 404 LECFKKAI 411 (510)
Q Consensus 404 ~~~~~~~~ 411 (510)
++.|++++
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-10 Score=114.45 Aligned_cols=392 Identities=9% Similarity=-0.032 Sum_probs=274.0
Q ss_pred hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCC---HHHHHHH
Q 010458 87 YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKK---SAEAEAL 162 (510)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~---~~~A~~~ 162 (510)
..+-+..|+.....+ |.+...|..++..+.+.+.++.+..+|+.+....| ....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344555666666665 78999999999999999999999999999998877 47889999998888899 9999999
Q ss_pred HHHHHhCC-CCCCcchHHHHHHHHHhCCCc--------CcHHHHHHHHHhC-C--CC-ChhHHHHHHHHHHh--------
Q 010458 163 MEKMSECG-FLKCPLPYNHMLNLYISNGQL--------DKVPQMLQELKKN-T--SP-DVVTYNLWLAACAS-------- 221 (510)
Q Consensus 163 ~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~--~~-~~~~~~~l~~~~~~-------- 221 (510)
|++..... .+|++..|...+....+.++. +.+.++|+..... + .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998864 247888898888776666654 2344777776654 2 23 56788888876542
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHc--cCC---CC----
Q 010458 222 -QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK-------------MELPEKAATTLKEMEKR--TCR---KN---- 278 (510)
Q Consensus 222 -~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~--~~~---~~---- 278 (510)
.++++.+..+|+++.......-..+|......--. ..+++.|...+.++... ++. |.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34578899999998864322223344322221111 12334455555554322 111 11
Q ss_pred ----------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH-
Q 010458 279 ----------------RVAYSSLLSLYTNMG-------YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAE- 334 (510)
Q Consensus 279 ----------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 334 (510)
...|...+..--..+ ..+.+..+|+++... .+-....|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 123444444333322 134466788888876 3346677888888888889999996
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHH
Q 010458 335 NIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI---------KPC------------YTTWELLTWG 393 (510)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 393 (510)
++|+...... +.+...|-..+....+.|+++.|..+|+++.+... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999998643 44566677788888899999999999999886310 132 2367888888
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--
Q 010458 394 YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-DIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK-- 470 (510)
Q Consensus 394 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 470 (510)
..+.|..+.|..+|.++++. .-.+...+|...+..-.+.| +.+.|..+|+...+..+.++..|...+......|+
T Consensus 444 erR~~~l~~AR~vf~~A~~~--~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRL--KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHT--GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999874 12223445544444444444 59999999999999877788899999998888898
Q ss_pred ChHHHHHHHHhCCC
Q 010458 471 MPLIIVERMQKDNV 484 (510)
Q Consensus 471 ~a~~~~~~m~~~~~ 484 (510)
.|..+|++......
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=131.43 Aligned_cols=213 Identities=9% Similarity=-0.072 Sum_probs=184.6
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCh-HHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRY-KHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFE 131 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 131 (510)
+++...++..... .+.+...|..+...+...|++ ++|++.|++..+.. |.++..+..+..++...|++++|.+.|+
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444555554432 345788899999999999999 99999999999875 6788999999999999999999999999
Q ss_pred hcccCCCChhhHHHHHHHHHhC---------CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhC--------CCcCcH
Q 010458 132 NLPDKMRGPDTCSALLHSYVQN---------KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISN--------GQLDKV 194 (510)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~a 194 (510)
++.+..|+...+..+...+... |++++|+..|++..+... .+...|..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9999989888999999999999 999999999999998763 2577899999999988 999999
Q ss_pred HHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010458 195 PQMLQELKKNTS---PDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEM 270 (510)
Q Consensus 195 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 270 (510)
++.|++..+..+ .+...|..+..++...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998766 689999999999999999999999999987764 345677888999999999999988766544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-11 Score=115.36 Aligned_cols=233 Identities=12% Similarity=0.017 Sum_probs=170.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCC-C-----Chh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKI-DP----DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-K-----NRV 280 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~ 280 (510)
+......+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+++..+.... + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33455567788999999999998765311 12 2456778888999999999999999887764211 1 245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCCCcc
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN----DAEYTCVISSLVKLGEFEKAENIYDEWES-----ISGTGDPR 350 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 350 (510)
+++.+..+|...|++++|...+++....... ++ ..++..+..++...|++++|...+++..+ ..+. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 6788889999999999999999888764211 11 24577788889999999999999998876 3322 366
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCCCCHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGI---KP-CYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDHRL 423 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~~~ 423 (510)
++..+..+|.+.|++++|...+++..+... .| ....+..+...+...++ +.+|+.++++.. ..+.....
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~----~~~~~~~~ 338 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN----LHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC----ChhHHHHH
Confidence 778888999999999999999998886321 12 23345666666777777 778888887732 22233456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+..+...|...|++++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888899999999999999988765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=124.97 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=129.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------c
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKT-------KIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR------T 274 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 274 (510)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666666666666666666665442 11223445566666666677777777666666543 1
Q ss_pred C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 010458 275 C-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF------AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESI--- 343 (510)
Q Consensus 275 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 343 (510)
- .....++..+...|...|++++|..+++++.... ..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1124456666666777777777777776665531 111 1234566666667777777777777766543
Q ss_pred ---cCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 010458 344 ---SGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTK-------GIKPCYT-------TWELLTWGYLKKGQMEKVLE 405 (510)
Q Consensus 344 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~~~~~~a~~ 405 (510)
+..| ...++..+..+|...|++++|...++++.+. ...+... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1011 2334566667777777777777777776642 1111111 11222223333445555555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 406 CFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 406 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
.++.... ..+....++..+..+|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6665553 22334566777888888888888888888877654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=126.37 Aligned_cols=168 Identities=18% Similarity=0.138 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcc------CcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCC-----
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQY------DIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKM----- 137 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 137 (510)
.+..++..+...+...|++++|+.+|+.+.+.. ..+.....+..+...+...|++++|...++++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 345667888888999999999999999887731 124455677788888888899999888888776541
Q ss_pred ---C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhC------CCCC-CcchHHHHHHHHHhCCCcCcHHHHHHHHHhC--
Q 010458 138 ---R-GPDTCSALLHSYVQNKKSAEAEALMEKMSEC------GFLK-CPLPYNHMLNLYISNGQLDKVPQMLQELKKN-- 204 (510)
Q Consensus 138 ---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 204 (510)
+ ...++..+...+...|++++|...|++..+. +..| ....+..+...+...|++++|.+++++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 2566777888888888888888888877653 1111 2234555566666666666666666665443
Q ss_pred -C----CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 205 -T----SP-DVVTYNLWLAACASQNDKETAEKAFLELK 236 (510)
Q Consensus 205 -~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 236 (510)
. .| ...++..+..++...|++++|...++++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 11 23445555555666666666666665554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.9e-11 Score=110.46 Aligned_cols=267 Identities=12% Similarity=0.024 Sum_probs=142.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCCC----hhHHHHH
Q 010458 146 LLHSYVQNKKSAEAEALMEKMSECGFLKCPL----PYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD----VVTYNLW 215 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~l 215 (510)
....+...|++++|...+++........+.. +++.+...+...|++++|...+++.... ..++ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344455666666666666655533111111 2344445555566666666666655432 1111 1234555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC----ChhhHHH
Q 010458 216 LAACASQNDKETAEKAFLELKK----TKID--P-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK----NRVAYSS 284 (510)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~ 284 (510)
...+...|++++|...+++..+ .+.. | ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6666667777777777666533 1211 2 23345556667777777777777777766542211 1234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhccCCCC---cchHHHH
Q 010458 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMND-AEYT-----CVISSLVKLGEFEKAENIYDEWESISGTGD---PRVPNIL 355 (510)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 355 (510)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++...+....+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 666677777777777777776554222211 1111 122335566777777777766654321111 1123455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 356 LAAYINRNQLEMAESFYNRLVTK----GIKPCY-TTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
...+...|++++|...+++.... |..++. ..+..+...+...|+.++|...++++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666677777777776665432 111111 2444555666666777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-11 Score=112.80 Aligned_cols=239 Identities=9% Similarity=-0.065 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHH--HhccChHHHHHHHHHHHHcc-CcccChhh--HHHHHHH--HHHhcChhhHH---------HHHH
Q 010458 68 TVHKYELNRIVREL--RKLKRYKHALEVCEWMELQY-DIKLVSGD--YAVHLDL--ISKIRGLSSAE---------NFFE 131 (510)
Q Consensus 68 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~~l~~~--~~~~g~~~~A~---------~~~~ 131 (510)
.|+...-+.+-.-| ...+++++|..+++++.+.. ....+... |..++.. ..-.+.++.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444444444444 67889999999998876642 11112222 2222221 11223333333 4444
Q ss_pred hcccCC-C-C-h---hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CC----cchHHHHHHHHHhCCCcCcHHHHHHH
Q 010458 132 NLPDKM-R-G-P---DTCSALLHSYVQNKKSAEAEALMEKMSECGFL-KC----PLPYNHMLNLYISNGQLDKVPQMLQE 200 (510)
Q Consensus 132 ~~~~~~-~-~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 200 (510)
.+.... + + . ..+......+...|++++|...|++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 433221 0 1 0 12223344455667777777777666543110 11 22445555555556666666555555
Q ss_pred HHhC--CCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 201 LKKN--TSP-----DVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 201 ~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
..+. ..+ ...+++.+..+|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4432 111 1234445555555555555555555543321 1000 12234444445555555555555555
Q ss_pred HHHH-----ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 269 EMEK-----RTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 269 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+..+ ..+. ...++..+...+.+.|++++|...+++...
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4443 2111 233444444444445555555554444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-10 Score=109.61 Aligned_cols=272 Identities=10% Similarity=0.079 Sum_probs=196.9
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhCCCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPD-V----VTYNLWLAACASQNDKETAEKAFLELKKTKI-DPD----WISYS 248 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~ 248 (510)
......+...|++++|...+++.....+++ . .+++.+...+...|++++|...+++..+... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556678999999999999988764332 2 2567777888899999999999998654210 112 23356
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcc----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----ChhhH
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRT----CR--K-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM----NDAEY 317 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 317 (510)
.+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++........ ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 77888999999999999999887642 11 2 23456778889999999999999999987753321 12457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc-chHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHH
Q 010458 318 TCVISSLVKLGEFEKAENIYDEWESISGTGDP-RVPN-----ILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTWE 388 (510)
Q Consensus 318 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~ 388 (510)
..+...+...|++++|...+++..+....++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888889999999999999998764322222 1222 233447789999999999998876543221 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccC--CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVR--KWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
.+...+...|++++|...++++..... +..++. .++..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778889999999999999998875311 111122 36667788899999999999999988654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-11 Score=104.02 Aligned_cols=209 Identities=11% Similarity=-0.054 Sum_probs=159.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 010458 242 PDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVI 321 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 321 (510)
.|+..+......+...|++++|...|++..+..+.++...+..+..++...|++++|+..+++....... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888889999999999999999999998866467788888999999999999999999999875322 456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 010458 322 SSLVKLGEFEKAENIYDEWESISGTGDP-------RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC---YTTWELLT 391 (510)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 391 (510)
.++...|++++|...+++..+..+. +. ..|..+...+...|++++|...|+++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999875432 34 45777888888999999999999999886 454 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
..|... +...++++... ...+...+.... ....+.+++|...+++..+..|.++.+...+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~---~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPL---ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGG---TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhc---ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777544 34455666543 223444444433 3445678999999999999998887776665443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-11 Score=100.57 Aligned_cols=164 Identities=14% Similarity=0.019 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 186 (510)
..+..+...+...|++++|...++.+.+..| +..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566666667777777777777666544 35566666666677777777777776666543 123445555555555
Q ss_pred hCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010458 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATT 266 (510)
Q Consensus 187 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 266 (510)
..|++++|.+.++++.+..+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666665555544455555555555555555555555555554432 23344555555555555555555555
Q ss_pred HHHHHHc
Q 010458 267 LKEMEKR 273 (510)
Q Consensus 267 ~~~~~~~ 273 (510)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-11 Score=107.55 Aligned_cols=237 Identities=9% Similarity=0.059 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHhCCCCChhHHHHHHHHHHhc--C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQ--N-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
.+|.+++.+..+..++....| .+ + +. + ++++|...|++. +..|...|++++|...|+
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 356666666665544322222 11 1 22 1 366666666554 334566777777777777
Q ss_pred HHHHc----cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhc-CCHHHHHHHH
Q 010458 269 EMEKR----TCRK-NRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKL-GEFEKAENIY 337 (510)
Q Consensus 269 ~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-~~~~~a~~~~ 337 (510)
+..+. |-.+ ...+|+.+..+|...|++++|+..+++......... ..++..+..+|... |++++|...|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 66553 1111 134677777777777777777777777655321111 23566666677774 7777777777
Q ss_pred HHHHhccCCC-C----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHH
Q 010458 338 DEWESISGTG-D----PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY------TTWELLTWGYLKKGQMEKVLEC 406 (510)
Q Consensus 338 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~ 406 (510)
++..+..... + ..++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7766532211 1 234666777777778888888888777765433221 1456666777777888888888
Q ss_pred HHHHhhccCCCCCCH------HHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCC
Q 010458 407 FKKAIGSVRKWVPDH------RLITAAYNKLE--EQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 407 ~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~ 452 (510)
|+++++. .|+. ..+..++.++. ..+++++|...|+++...++
T Consensus 222 ~~~al~l----~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 222 LQEGQSE----DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHhh----CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 8777743 3321 12334444443 34556777776666554433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=100.74 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+..+.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455555566666666666666666554331 234445555555556666666666666555544445555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLR 300 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (510)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 234445555555555555555555555555554322 34455555555555555555555
Q ss_pred HHHHHHH
Q 010458 301 IWKKMMS 307 (510)
Q Consensus 301 ~~~~~~~ 307 (510)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-11 Score=125.36 Aligned_cols=167 Identities=9% Similarity=0.004 Sum_probs=149.3
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 146 (510)
|-+..+|+.+...+.+.|++++|++.|++..+.. |.+...+..+..++.+.|++++|+..|+++.+..|+ ..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3356789999999999999999999999999875 778889999999999999999999999999888775 7899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
..+|...|++++|++.|++..+.... +..+|+.+..+|...|++++|++.|++..+..+.+...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999887522 56789999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHHHHh
Q 010458 227 TAEKAFLELKK 237 (510)
Q Consensus 227 ~a~~~~~~m~~ 237 (510)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=124.34 Aligned_cols=169 Identities=10% Similarity=-0.033 Sum_probs=149.4
Q ss_pred cccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHH
Q 010458 103 IKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHM 181 (510)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 181 (510)
.|.++..++.+..++.+.|++++|++.|+++.+..|+ ..+|..+..+|.+.|++++|++.|++..+.+.. +..+|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3567788999999999999999999999999988775 789999999999999999999999999887622 56789999
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
..++...|++++|++.|++..+..+.+..+|+.+..++...|++++|++.|++..+.. +-+...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999988877789999999999999999999999999988764 345788999999999999999
Q ss_pred HHHHHHHHHHHc
Q 010458 262 KAATTLKEMEKR 273 (510)
Q Consensus 262 ~A~~~~~~~~~~ 273 (510)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.1e-11 Score=102.32 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcc-cChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIK-LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSAL 146 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 146 (510)
.++..|......+...|++++|+..|+...+.. | ++...+..+..++...|++++|+..+++..+..|+ ..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 455677777777777788888888888777764 3 56666666777777777777777777777776664 5667777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCC-c-------chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC--ChhHHHHHH
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKC-P-------LPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWL 216 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 216 (510)
...+...|++++|...|++..+.. |+ . ..|..+...+...|++++|++.|++..+..+. +..++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 777777777777777777777654 33 2 23444455555555555555555555554333 344444444
Q ss_pred HHHH
Q 010458 217 AACA 220 (510)
Q Consensus 217 ~~~~ 220 (510)
.++.
T Consensus 161 ~~~~ 164 (228)
T 4i17_A 161 VLFY 164 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-11 Score=106.19 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=111.2
Q ss_pred HhCCCcCcHHHHHHHHHhC-------C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKN-------T-SPDVVTYNLWLAACASQNDKETAEKAFLELKKT------KI-DPDWISYSTL 250 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 250 (510)
...|++++|...|++..+. . +....++..+..++...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888776652 1 124667888888888888988888888887543 11 2235567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcc-----C--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh------cCCC-Chhh
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRT-----C--RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL------FAKM-NDAE 316 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 316 (510)
...|...|++++|...+++..+.. . +....++..+...|...|++++|..+++++... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888877651 1 123556778888888888888888888887664 1122 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
+..+..++...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777778888888888888877765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=104.35 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=155.4
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcc------C-CCChhhHHHHH
Q 010458 221 SQNDKETAEKAFLELKK-------TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRT------C-RKNRVAYSSLL 286 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~l~ 286 (510)
..|++++|...+++..+ ...+....++..+...|...|++++|...++++.+.. - +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666666533 2223346678899999999999999999999987651 1 22356788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhc-----C-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------c-CCCCcchH
Q 010458 287 SLYTNMGYKDEVLRIWKKMMSLF-----A-KM-NDAEYTCVISSLVKLGEFEKAENIYDEWESI------S-GTGDPRVP 352 (510)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~ 352 (510)
..|...|++++|..+++++.... . .| ....+..+...+...|++++|...++++.+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999987651 1 12 2456888889999999999999999998764 1 11134567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhhccCCCC
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTK-------GIKPC-YTTWELLTWGYLKKGQ------MEKVLECFKKAIGSVRKWV 418 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~ 418 (510)
..+..+|...|++++|..+++++.+. ...+. ...|..+...+...+. +..+...++.... ..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 249 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DSP 249 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CCH
Confidence 88899999999999999999988763 11222 2233333333333222 2233333332221 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 419 PDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 419 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
....++..+...|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23457788899999999999999999988754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-09 Score=94.26 Aligned_cols=159 Identities=10% Similarity=0.064 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHH
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISG-TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKP-----CYTTWELL 390 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l 390 (510)
+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHH
Confidence 33444444455555555555554443322 112333444445555555555555555555443 23 12333333
Q ss_pred HHH--HHhcC--CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------CCCCHH
Q 010458 391 TWG--YLKKG--QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA----------GHVSTE 456 (510)
Q Consensus 391 ~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~ 456 (510)
+.+ ....| ++.+|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+.+. ++.++.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 333 11122 455555555554432 233222222222455555555555555544332 133444
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHh
Q 010458 457 IYNSLLRTYAKAGKMPLIIVERMQK 481 (510)
Q Consensus 457 ~~~~l~~~~~~~g~~a~~~~~~m~~ 481 (510)
+...+|......|++|.+++.++.+
T Consensus 257 ~LaN~i~l~~~lgk~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQGLDTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHH
Confidence 4434444444444455555555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-09 Score=92.79 Aligned_cols=79 Identities=10% Similarity=-0.055 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 228 AEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 228 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (510)
+...|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 23333333444455555555555555554444332 1133444444555555555555555555554
Q ss_pred H
Q 010458 307 S 307 (510)
Q Consensus 307 ~ 307 (510)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-09 Score=97.98 Aligned_cols=208 Identities=9% Similarity=-0.008 Sum_probs=151.9
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDPD-WISYSTLTSLYIKMELPEKAA 264 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 264 (510)
++++|...|++. +..|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777765 44677889999999998886442 32222 467888999999999999999
Q ss_pred HHHHHHHHccCCC-C----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHHHhcCCHHHH
Q 010458 265 TTLKEMEKRTCRK-N----RVAYSSLLSLYTNM-GYKDEVLRIWKKMMSLFAKMN-----DAEYTCVISSLVKLGEFEKA 333 (510)
Q Consensus 265 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a 333 (510)
..|++..+..... + ..++..+...|... |++++|+..|++........+ ..++..+...+...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999887652211 1 35788899999996 999999999999877532111 24578888999999999999
Q ss_pred HHHHHHHHhccCCCCcc------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCCHH
Q 010458 334 ENIYDEWESISGTGDPR------VPNILLAAYINRNQLEMAESFYNRLVTKGIKP-C---YTTWELLTWGYL--KKGQME 401 (510)
Q Consensus 334 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~--~~~~~~ 401 (510)
...|++..+..+..... .+..+..++...|++++|...|++..+..+.. + ...+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999998765443321 46777888999999999999999988743211 1 113444556664 456788
Q ss_pred HHHHHHHHHh
Q 010458 402 KVLECFKKAI 411 (510)
Q Consensus 402 ~a~~~~~~~~ 411 (510)
+|+..|+++.
T Consensus 258 ~A~~~~~~~~ 267 (292)
T 1qqe_A 258 EHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHhccCC
Confidence 9999988776
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-10 Score=99.27 Aligned_cols=209 Identities=11% Similarity=-0.025 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----h
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRG----P 140 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 140 (510)
+.+...+..+...+.+.|++++|+..|+.+.+.. |.+ +..+..+..++...|++++|+..|+++.+..|+ +
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456667777778888888888888888887764 444 567778888888888888888888888776552 4
Q ss_pred hhHHHHHHHHHh--------CCCHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 141 DTCSALLHSYVQ--------NKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 141 ~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
.++..+..++.. .|++++|...|+++.+.. |+. ..+..+... ..+... ....
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~--------------~~~~~~---~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKI--------------RELRAK---LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHH--------------HHHHHH---HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHH--------------HHHHHH---HHHH
Confidence 566677777777 888888888888887754 432 222221110 000000 1112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHccCCCC-
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDP--DWISYSTLTSLYIKM----------ELPEKAATTLKEMEKRTCRKN- 278 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~- 278 (510)
+..+..++.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|+++.+..+...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 4556777778888888888888876543211 234566677777755 777888888888877633311
Q ss_pred -hhhHHHHHHHHHhcCCHHH
Q 010458 279 -RVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 279 -~~~~~~l~~~~~~~~~~~~ 297 (510)
......+...+...+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 1234445555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-08 Score=94.58 Aligned_cols=363 Identities=10% Similarity=0.029 Sum_probs=229.5
Q ss_pred hcc-ChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCC-HHHHH
Q 010458 83 KLK-RYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKK-SAEAE 160 (510)
Q Consensus 83 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~ 160 (510)
+.| +++.|..+|+.+...- |. |+++.+..+|++....-|+...|...+....+.++ .+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence 345 3777888888887652 32 89999999999999988999999998888777663 45677
Q ss_pred HHHHHHHhC-CCCC-CcchHHHHHHHHH----hCCCcCcHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc-----------
Q 010458 161 ALMEKMSEC-GFLK-CPLPYNHMLNLYI----SNGQLDKVPQMLQELKKNTSPD-VVTYNLWLAACASQ----------- 222 (510)
Q Consensus 161 ~~~~~~~~~-~~~p-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~----------- 222 (510)
.+|+..... |..| +...|...+..+. ..++.+.+.++|++.......+ ...|......-...
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 788877653 4323 5567777776554 2356778999999998742112 23344333322111
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 223 --NDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKME--L-----PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 223 --~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++....+. +...|...+..+...|
T Consensus 149 ~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 149 TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcC
Confidence 123334445554432100113345655555432221 1 34567899998886443 6788888899999999
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc------------CCCCcchHHHHHHHHHh
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS------------GTGDPRVPNILLAAYIN 361 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~ 361 (510)
++++|..++++.... |....+.. .|....+.++. ++.+.+.- ......+|...+....+
T Consensus 228 ~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999999987 44433221 22222121221 22222110 00112456666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK-KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGA 440 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 440 (510)
.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+.+++. .+-++..+...++...+.|+.+.|
T Consensus 299 ~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~---~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK---HPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999 32 22344555433322222 34699999999999974 333455667778888899999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHHh
Q 010458 441 EHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQK 481 (510)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~~ 481 (510)
+.+|+++ ......|...+.--...|+ .+..+++++..
T Consensus 374 R~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998 2367889999988888899 56667777653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-09 Score=93.82 Aligned_cols=190 Identities=9% Similarity=-0.067 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CC-hhhHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN---RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MN-DAEYTC 319 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ 319 (510)
..+-.+...+.+.|++++|...|+++.+..+. + ...+..+..+|...|++++|+..|+++.+..+. |. ...+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444444455555555555555555444222 1 334444555555555555555555555443211 11 123334
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 320 VISSLVK--------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391 (510)
Q Consensus 320 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 391 (510)
+..++.. .|++++|...|+++.+..+. +......+... ..+... ....+..+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~la 155 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYEAA 155 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHHHH
Confidence 4444444 55555555555555543211 11111111100 000000 001134455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCC
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ----------GDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 454 (510)
..|...|++++|+..|+++++..+........+..+..+|... |++++|...|+++.+..|.+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 5566666666666666666643111111234555555555544 66666776666666666554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-10 Score=92.04 Aligned_cols=144 Identities=10% Similarity=-0.016 Sum_probs=106.8
Q ss_pred HHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCH
Q 010458 78 VRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKS 156 (510)
Q Consensus 78 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 156 (510)
...+...|++++|+..++...... |..+..+..+...|.+.|++++|++.|+++.+..| ++.+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 344556678888888888876653 55566777788888888888888888888887766 477888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH-HHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010458 157 AEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM-LQELKKNTSPDVVTYNLWLAACASQND 224 (510)
Q Consensus 157 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 224 (510)
++|...|++..+.+.. +..+|..+...|.+.|++++|.+. +++..+..|.+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888876522 466788888888888888776665 466666666677777777777666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-10 Score=113.06 Aligned_cols=173 Identities=9% Similarity=-0.034 Sum_probs=135.8
Q ss_pred HhccChHHHHHHHHHHH--------HccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHh
Q 010458 82 RKLKRYKHALEVCEWME--------LQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQ 152 (510)
Q Consensus 82 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 152 (510)
...|++++|++.++... +.. |.+...+..+...+...|++++|++.|+++.+..| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788999999998887 443 66777888888888899999999999998887766 46788888888889
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 153 NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
.|++++|.+.|++..+.... +...|..+..++.+.|++++ .+.|++..+..+.+...|..+..++.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988876522 56778888888888999998 88888888877778888888888888889999999888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 233 LELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 233 ~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
++..+.. +.+...+..+..++...++
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCC
Confidence 8876653 2235566667777665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-08 Score=87.25 Aligned_cols=168 Identities=9% Similarity=0.026 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC------
Q 010458 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE--KAENIYDEWESISGTGDPRVPNILLAAYINRNQ------ 364 (510)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 364 (510)
+++++++.+++.+.....+ +...|+.-.-++...|.++ ++++.++++.+..+. |...|+.-...+...++
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 3445555555555443221 3334444444444444444 555555555544322 44444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK-VLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL 443 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 443 (510)
++++++.+++++...+. |...|+.+...+.+.|+... +..+..++.+....-..++..+..++..+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 67777777777776544 66777777777777666433 44566655542001244677788888888888888888888
Q ss_pred HHHHHh-CCCCCHHHHHHHHH
Q 010458 444 LVTLRN-AGHVSTEIYNSLLR 463 (510)
Q Consensus 444 ~~~~~~-~~~~~~~~~~~l~~ 463 (510)
++.+.+ .+|.....|+..+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 888876 57767777766544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-09 Score=90.62 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=57.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 010458 285 LLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364 (510)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (510)
+..+|...|++++|+..|++..+..+. +...+..+..++...|++++|...|+++.+..+ .+...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 555555555555555555555553211 334455555555555555555555555554432 234445555555443332
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 365 --LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 365 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
.+.+...++.... ..|....+.....++...|++++|+..|++++
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2233333333321 11112222333344444555666666666665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=91.56 Aligned_cols=144 Identities=11% Similarity=0.100 Sum_probs=109.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 010458 322 SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME 401 (510)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 401 (510)
..+...|++++|+..++......+ .+...+..+...|.+.|++++|...|++.++..+. +...|..+...|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 344556778888888887765332 23445667888888889999999999888886543 6778888888899999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 402 KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHL-LVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+|+..|+++++. .+-+..++..+...|.+.|++++|.+. ++++.+..|.++.+|+.....+...|+
T Consensus 83 ~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999988863 233577888888888888988766554 588888888888888888888777765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-09 Score=83.94 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 010458 214 LWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG 293 (510)
Q Consensus 214 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (510)
.+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.++. +...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhc
Confidence 33444444444444444444443322 123333444444444444444444444444433221 3333444444444444
Q ss_pred CHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
++++|..+++++.... +.+...+..+...+...|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444331 1123334444444444444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=90.81 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH-H
Q 010458 108 GDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL-Y 185 (510)
Q Consensus 108 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 185 (510)
..+......+...|++++|+..|+++.+..| ++..+..+...+...|++++|+..|+...+.. |++..+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3455555666666777777777766666554 35666666666667777777777766665543 322222211111 1
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEKAA 264 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 264 (510)
...+...+|...+++..+..+.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 122233446677777666655567777777777777777777777777776654322 2446667777777777777777
Q ss_pred HHHHHHHH
Q 010458 265 TTLKEMEK 272 (510)
Q Consensus 265 ~~~~~~~~ 272 (510)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-09 Score=98.38 Aligned_cols=164 Identities=10% Similarity=-0.000 Sum_probs=85.0
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHH-HHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNH-MLN 183 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~ 183 (510)
+...+..+...+...|++++|+..|+++....| ++..+..+...+...|++++|...++.+.... |+...... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 334444444555555555555555555544444 24445555555555555555555555544432 22221111 112
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHH
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP-DWISYSTLTSLYIKMELPEK 262 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 262 (510)
.+...++.++|...+++.....+.+...+..+...+...|++++|...|.++.+..... +...+..++..+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 23444555556666666555555556666666666666666666666666655543211 14455666666666666666
Q ss_pred HHHHHHHHH
Q 010458 263 AATTLKEME 271 (510)
Q Consensus 263 A~~~~~~~~ 271 (510)
|...|++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=93.51 Aligned_cols=180 Identities=11% Similarity=-0.006 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYV 151 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (510)
..+......+...|++++|+..|+...+.. |.++..+... ..... ....+.....+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch------------hhhhHHHHHHHHHHHH
Confidence 344444555666677777777777766653 3333333220 00000 0001222333666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--HHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQND--KETAE 229 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~ 229 (510)
+.|++++|...|++..+.... +...|..+..++...|++++|...|++..+..+.+..++..+..++...|+ .+.+.
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666666666666665421 445566666666666666666666666666555566666666666544432 23334
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 230 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..++.... ..|....+..+..++...|++++|...|++..+.
T Consensus 145 ~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 145 TDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44433321 1222222333444555566666666666666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-08 Score=88.13 Aligned_cols=219 Identities=8% Similarity=-0.008 Sum_probs=144.0
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc--ChhhHHHHHHhcccCCCC-hhhHHHHHHHH----HhC---C
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR--GLSSAENFFENLPDKMRG-PDTCSALLHSY----VQN---K 154 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~----~~~---~ 154 (510)
...++|++.++.+...+ |....+|+.-..++...| ++++++++++.+....|. ..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 34467888888888775 666677777777777777 888888888887777663 45555444444 444 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC--cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC------HH
Q 010458 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD--KVPQMLQELKKNTSPDVVTYNLWLAACASQND------KE 226 (510)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 226 (510)
++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+.|..+|+.-.......+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 778888888888776533 6667777777777777777 78888888877766677777776666666655 66
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEK-AATTLKEMEKRT--CRKNRVAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
++++.++++.... +-|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..+..+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 6677766665553 3456666666666666665333 334444444332 11245566666666666666666666666
Q ss_pred HHHH
Q 010458 304 KMMS 307 (510)
Q Consensus 304 ~~~~ 307 (510)
.+..
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-09 Score=82.10 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010458 319 CVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG 398 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 398 (510)
.+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|..+++++.+.+. .+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 33444444455555555554444332 11333444444455555555555555555544321 23444445555555555
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNA 450 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 450 (510)
++++|.++++++.+. .+.+..++..+...+.+.|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 555555555555542 1223445555555555555555555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=9.8e-09 Score=88.77 Aligned_cols=189 Identities=10% Similarity=-0.036 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh--hhHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND--AEYT 318 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 318 (510)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677888999999999999999988644311 356778889999999999999999999886433211 1344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 319 CVISSLVK------------------LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGI 380 (510)
Q Consensus 319 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 380 (510)
.+..++.. .|++++|...|+++.+..+. +...+....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHHH----
Confidence 44444443 34455555555555533211 111111110000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 381 KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...+|.+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRD----YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHH----CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01123456677788888888888888764 233 2467777888888888888888888887776653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.8e-09 Score=90.21 Aligned_cols=202 Identities=9% Similarity=-0.045 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----hhH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----DTC 143 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 143 (510)
...+..+...+.+.|++++|+..|+.+.+.. |.+ +..+..++.++.+.|++++|+..|+++.+..|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 4455566666777777777777777777653 222 2456667777777777777777777776665542 234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN 223 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 223 (510)
..+..++...+.. .+ ..|..+...+...|++++|...|+++.+..+.+..++........
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~--- 141 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF--- 141 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH---
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH---
Confidence 4444444332210 00 011122223334566677777777776664444433322211100
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 010458 224 DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN--RVAYSSLLSLYTNMGYKDEVLRI 301 (510)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 301 (510)
+...+. .....+...|.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.
T Consensus 142 -------~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 142 -------LKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -------HHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 000000 1112456677788888888888888877643311 24577778888888888888888
Q ss_pred HHHHHHhc
Q 010458 302 WKKMMSLF 309 (510)
Q Consensus 302 ~~~~~~~~ 309 (510)
++.+...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 88776653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-09 Score=107.87 Aligned_cols=173 Identities=9% Similarity=-0.017 Sum_probs=116.1
Q ss_pred HhcCChHHHHHHHHHHH--------HccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 010458 255 IKMELPEKAATTLKEME--------KRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVK 326 (510)
Q Consensus 255 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (510)
...|++++|++.+++.. +..+. +...+..+..++...|++++|+..|+++.+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56777777777777776 33222 5566777777777777777777777777765322 44567777777777
Q ss_pred cCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010458 327 LGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLEC 406 (510)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 406 (510)
.|++++|...|++..+..+ .+...+..+..+|...|++++ ...|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777788777777776542 256667777777777787777 7777777775433 556777777777778888888888
Q ss_pred HHHHhhccCCCCCC-HHHHHHHHHHHHHcCC
Q 010458 407 FKKAIGSVRKWVPD-HRLITAAYNKLEEQGD 436 (510)
Q Consensus 407 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 436 (510)
|+++.+ ..|+ ...+..+..++...|+
T Consensus 557 ~~~al~----l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP----TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT----TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc----cCcccHHHHHHHHHHHHccCC
Confidence 877764 3454 4456666666655444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-09 Score=94.50 Aligned_cols=130 Identities=8% Similarity=0.120 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---C--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-----cc
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKM---N--DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-----PR 350 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~ 350 (510)
+|+.+..+|...|++++|+..|++........ . ..++..+..+|.. |++++|...|++..+.....+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 34444445555555555555555443321110 0 1234444444444 555555555555443211100 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKG----IKPC-YTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
+++.+...|...|++++|...|++..+.. ..+. ...+..+..++...|++++|...|++++
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555566666666666666666555421 1011 1234444555555666666666666665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=89.19 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHH-HH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS-YV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~ 151 (510)
.+......+.+.|++++|+..|+...+.. |.++..+..+..++...|++++|+..++.+....|++..+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 45667778889999999999999988875 7788899999999999999999999999998887744433332222 22
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
..+....|...+++..+... .+...+..+...+...|++++|...|+++.+..+. +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233457888888887652 25678889999999999999999999999887432 4668899999999999999999
Q ss_pred HHHHHHH
Q 010458 230 KAFLELK 236 (510)
Q Consensus 230 ~~~~~m~ 236 (510)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-07 Score=89.23 Aligned_cols=204 Identities=11% Similarity=-0.009 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
+.+..+|+++.... +.+...|...+..+.+.|++++|..+|++.... + .+...|. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHH
Confidence 45667888876643 455777888888888889999999999998887 2 2332222 22222111221 2222
Q ss_pred HHhc---------CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh-cCCHHHHHHHH
Q 010458 306 MSLF---------AKM---NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN-RNQLEMAESFY 372 (510)
Q Consensus 306 ~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~ 372 (510)
.+.- ..+ ....|...+....+.++.+.|..+|+.. +. ...+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2210 001 1244666677777788899999999998 32 12233334322222222 33699999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 373 NRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 373 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
+...+.... +...+...+....+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+..++++..+
T Consensus 344 e~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999885322 345566677777889999999999999742 477888888888888999999999988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-08 Score=86.43 Aligned_cols=177 Identities=11% Similarity=-0.032 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc----ChhhHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR----GLSSAEN 128 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~ 128 (510)
++|.+.|++..+.| ++.++..+...+...+++++|+..|+...+.+ ++..+..+..+|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 34555555555543 45556666666666666666666666665543 44555555555554 4 5666666
Q ss_pred HHHhcccCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHh----CCCcCcHHHHHH
Q 010458 129 FFENLPDKMRGPDTCSALLHSYVQ----NKKSAEAEALMEKMSECGFL-KCPLPYNHMLNLYIS----NGQLDKVPQMLQ 199 (510)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 199 (510)
+|++..+. .++..+..|...|.. .+++++|..+|++..+.|.. .++.++..|...|.. .+++++|..+|+
T Consensus 75 ~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 75 LAEKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 66655433 234455555555554 55566666666655554410 013444445555544 444455555555
Q ss_pred HHHhCCCCChhHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010458 200 ELKKNTSPDVVTYNLWLAACASQ-N-----DKETAEKAFLELKKTK 239 (510)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~m~~~~ 239 (510)
+..+. +++...+..+..+|... | ++++|...|++..+.|
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 54433 22333344444444321 1 4445555554444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-09 Score=93.67 Aligned_cols=167 Identities=8% Similarity=0.010 Sum_probs=105.9
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHH
Q 010458 139 GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAA 218 (510)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 218 (510)
+...+..+...+...|++++|...|++..+... -+...+..+...+.+.|++++|...++++....+............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 345566666667777777777777777766542 1445666677777777777777777777655533222222222333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010458 219 CASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-NRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 219 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 297 (510)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.. +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666666777777766553 3456667777777777777777777777777764331 14567777777777777777
Q ss_pred HHHHHHHHHH
Q 010458 298 VLRIWKKMMS 307 (510)
Q Consensus 298 a~~~~~~~~~ 307 (510)
|...+++...
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-08 Score=86.35 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=65.4
Q ss_pred HHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCC----CHHHHHHHHHH
Q 010458 90 ALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNK----KSAEAEALMEK 165 (510)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~ 165 (510)
|++.|+...+.+ ++..+..+...+...+++++|+..|++..+.+ ++..+..|...|.. + ++++|.+.|++
T Consensus 5 A~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 445555554443 45555555555555566666666665554432 34444555555544 4 55555555555
Q ss_pred HHhCCCCCCcchHHHHHHHHHh----CCCcCcHHHHHHHHHhCCCC--ChhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 010458 166 MSECGFLKCPLPYNHMLNLYIS----NGQLDKVPQMLQELKKNTSP--DVVTYNLWLAACAS----QNDKETAEKAFLEL 235 (510)
Q Consensus 166 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~a~~~~~~m 235 (510)
..+.| ++.++..|...|.. .+++++|+++|++..+..++ +..++..|...|.. .+++++|...|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 54432 33344444444443 34444444444444433221 13344444444444 33444444444444
Q ss_pred Hh
Q 010458 236 KK 237 (510)
Q Consensus 236 ~~ 237 (510)
.+
T Consensus 156 ~~ 157 (212)
T 3rjv_A 156 SS 157 (212)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.8e-09 Score=94.15 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=49.4
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
.|++++|.+++++..+.. +. . .+...+++++|...|+. ....|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---~------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---S------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---C------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---c------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHH
Confidence 466677777777766542 11 1 11113555555555544 244566677777777777
Q ss_pred HHHHhCCCCC-C----cchHHHHHHHHHhCCCcCcHHHHHHHHH
Q 010458 164 EKMSECGFLK-C----PLPYNHMLNLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 164 ~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 202 (510)
.+..+..... + ..+|+.+...|...|++++|+..|++..
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6655421000 1 2244455555555555555555555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-08 Score=99.39 Aligned_cols=151 Identities=10% Similarity=0.001 Sum_probs=62.6
Q ss_pred CCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010458 189 GQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLK 268 (510)
Q Consensus 189 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 268 (510)
|++++|.+.|++..+..+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444444333344444455555555555555555555544432 2234444445555555555555555555
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 010458 269 EMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKL---GEFEKAENIYDEWES 342 (510)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 342 (510)
+..+..+. +...+..+..+|...|++++|.+.+++..+... .+...+..+..++... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 55444322 344444455555555555555555555444321 1233444444444444 555555555555444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=101.29 Aligned_cols=153 Identities=12% Similarity=-0.007 Sum_probs=81.0
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENI 336 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 336 (510)
.|++++|.+.|++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666666655333 455666666666666777777777666665421 1345566666666666666666666
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhc
Q 010458 337 YDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK---GQMEKVLECFKKAIGS 413 (510)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 413 (510)
+++..+.. +.+...+..+..+|...|++++|...+++..+.... +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66666543 224455666666666666666666666666654322 445566666666666 6666666666666653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-08 Score=75.80 Aligned_cols=111 Identities=10% Similarity=-0.019 Sum_probs=89.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
..+......|.+.|++++|+..|++.++.++. +...|..+..+|.+.|++++|+..|+++++. -+.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHHH
Confidence 34666778888888888888888888876533 6778888888888899999999999988863 2345778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
++...|++++|.+.|++..+.+|.+...+..|..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 89999999999999999988888888877766543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.4e-08 Score=84.66 Aligned_cols=189 Identities=9% Similarity=-0.102 Sum_probs=143.4
Q ss_pred hccChHHHHHHHHHHHHccCcccChhhHHHH-------HHHHHHhcChhhHHHHHHhcccCCCC----------------
Q 010458 83 KLKRYKHALEVCEWMELQYDIKLVSGDYAVH-------LDLISKIRGLSSAENFFENLPDKMRG---------------- 139 (510)
Q Consensus 83 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~---------------- 139 (510)
..++...|.+.|..+.+.. |...+.|..+ ...+...++..+++..+.......|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5799999999999999986 7788888888 67888888888888877776664322
Q ss_pred ------hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCC--hhH
Q 010458 140 ------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPD--VVT 211 (510)
Q Consensus 140 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 211 (510)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......|. ..+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 2234556778889999999999999888755 443356666678888999999999998554432221 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHccC
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPD--WISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 275 (510)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77788888999999999999998875433243 34566677888889999999999999988743
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-07 Score=80.80 Aligned_cols=172 Identities=9% Similarity=0.003 Sum_probs=117.7
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc-ChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhC-C-CHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR-GLSSAENFFENLPDKMR-GPDTCSALLHSYVQN-K-KSAEA 159 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~-~~~~A 159 (510)
.+..++|+++++.+...+ |.+..+|+.-..++...| .+++++++++.+....| +..+|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344567888888888775 666677777777777777 48888888888877766 356676666655555 5 77888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC--------cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-------
Q 010458 160 EALMEKMSECGFLKCPLPYNHMLNLYISNGQLD--------KVPQMLQELKKNTSPDVVTYNLWLAACASQND------- 224 (510)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 224 (510)
+++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+.|..+|+.....+.+.+.
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 8888888876533 6667766666666666666 77777777777766677777777777766665
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 225 KETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
++++++.+++..... +-|...|+.+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566777776666543 3456666655555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-06 Score=78.71 Aligned_cols=244 Identities=10% Similarity=0.062 Sum_probs=124.2
Q ss_pred CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHH
Q 010458 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQN-DKETAEKAFLELKKTKIDPDWISYSTLTSLYIKM-E-LPEKAATT 266 (510)
Q Consensus 190 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~ 266 (510)
..++|+++++++....+.+..+|+.-..++...+ ++++++++++.+.... +-+..+|+.-...+.+. + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3345666666666665556666666666665555 3666666666665543 23455555554444444 4 55666666
Q ss_pred HHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 010458 267 LKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGT 346 (510)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 346 (510)
++++.+..++ +..+|+.-.-++.+.+.++. .+ ...+.++++.++++.+..+.
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhCCC
Confidence 6666655443 45555544444444333330 00 00011444444444433321
Q ss_pred CCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-------------------
Q 010458 347 GDPRVPNILLAAYINRNQ-------LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM------------------- 400 (510)
Q Consensus 347 ~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~------------------- 400 (510)
|...|+.....+.+.++ ++++++.++++....+. |...|+.+-..+.+.|..
T Consensus 200 -N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 200 -NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp -CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred -CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 33444444444444333 45555555555554332 444555444444443332
Q ss_pred -HHHHHHHHHHhhcc---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q 010458 401 -EKVLECFKKAIGSV---RKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLR-NAGHVSTEIYNSLLRT 464 (510)
Q Consensus 401 -~~a~~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~ 464 (510)
....++...+.... ....+++..+..+++.|...|+.++|.++++.+. +.+|....-|+..++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 12222222222210 0114677788888888888888888999988886 4455556666655543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5.7e-07 Score=81.12 Aligned_cols=162 Identities=10% Similarity=-0.048 Sum_probs=77.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-----hhHHH
Q 010458 250 LTSLYIKMELPEKAATTLKEMEKRTCR-KNR----VAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-----AEYTC 319 (510)
Q Consensus 250 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 319 (510)
.+..+...|++++|...+++..+.... |+. ..+..+...+...+++++|+..++++.......+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355666677777777777776653211 111 12223445555556666666666666553221111 13555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----cCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWESI-----SGTG-DPRVPNILLAAYINRNQLEMAESFYNRLVTK----GIKPC-YTTWE 388 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 388 (510)
+..+|...|++++|...|+++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555556666666666666555521 0000 1123444555555555555555555544421 11111 23444
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHh
Q 010458 389 LLTWGYLKKGQ-MEKVLECFKKAI 411 (510)
Q Consensus 389 ~l~~~~~~~~~-~~~a~~~~~~~~ 411 (510)
.+..++.+.|+ +++|.+.+++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44555555552 355555554444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-07 Score=72.62 Aligned_cols=117 Identities=20% Similarity=0.197 Sum_probs=87.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++++.+. .+.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHH
Confidence 34566677777788888888888888776532 35667777888888888888888888888763 244667777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAG 469 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 469 (510)
..+...|++++|...++++.+..+.++..+..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888877777777777776665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-07 Score=84.10 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=44.2
Q ss_pred HHHHHHhcChhhHHHHHHhcccCCCC-h------hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-Cc----chHHHH
Q 010458 114 LDLISKIRGLSSAENFFENLPDKMRG-P------DTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-CP----LPYNHM 181 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~----~~~~~l 181 (510)
+..+...|++++|...+++.....+. + ..+..+...+...|++++|+..|++..+..... +. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45556666666666666665543221 1 122234455555566666666666665532211 11 134444
Q ss_pred HHHHHhCCCcCcHHHHHHHHH
Q 010458 182 LNLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~ 202 (510)
...|...|++++|...|++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-07 Score=78.86 Aligned_cols=126 Identities=15% Similarity=0.061 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ 190 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 190 (510)
..+...+...|++++|...|+++. .+++.++..+...+...|++++|...|++..+.. +.+...|..+..++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 334445555556666666655553 2345555555555666666666666665555543 1234455555555555666
Q ss_pred cCcHHHHHHHHHhCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 191 LDKVPQMLQELKKNTSPDV----------------VTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 191 ~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
+++|.+.|++..+..+.+. .++..+..++...|++++|...|++..+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666555555432222 566677777777777777777777776653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=74.08 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|+..++++.+. .+.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHH
Confidence 3455677777888888888888888888776432 6677888888888888888888888888863 23457788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
..++.+.|++++|...+++..+..+.+...+..+...+...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888777777777777777776653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-08 Score=88.58 Aligned_cols=193 Identities=10% Similarity=-0.023 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALL 147 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 147 (510)
.+...+..+...+.+.|++++|+..|+...+.. |.++..+..+..++...|++++|+..++++.+..|+ ...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356678888889999999999999999998875 668888999999999999999999999998888764 77888899
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010458 148 HSYVQNKKSAEAEALMEKMSECGFLKCP-LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKE 226 (510)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 226 (510)
.++...|++++|...|+...+.+ |+. ..+...+....+. .++...........+++......+... ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 99999999999999998887654 221 1111111111111 111111111112233344444433332 257777
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010458 227 TAEKAFLELKKTKIDPDW-ISYSTLTSLYIKM-ELPEKAATTLKEMEK 272 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 272 (510)
+|.+.+++..+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 787777776654 3333 2333333333333 556677777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-07 Score=76.80 Aligned_cols=128 Identities=18% Similarity=0.084 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...|++..+..+. +...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 4455566667777777777776552 456667777777777777777777777777766433 56667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMN---------------DAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
.|++++|...|++......... ...+..+..++...|++++|...|+...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777777766422111 1456666667777777777777777776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-07 Score=82.37 Aligned_cols=127 Identities=13% Similarity=0.003 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCCCC-------hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-C----cc
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRG-------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLK-C----PL 176 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~----~~ 176 (510)
.+...+..+...|++++|.+.++...+..+. ...+..+...+...|++++|+..+++..+..... + ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4444556666777777777776655444221 1223334455566667777777766665432110 1 12
Q ss_pred hHHHHHHHHHhCCCcCcHHHHHHHHHhC---CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 177 PYNHMLNLYISNGQLDKVPQMLQELKKN---TSPD----VVTYNLWLAACASQNDKETAEKAFLEL 235 (510)
Q Consensus 177 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 235 (510)
+|+.+...|...|++++|...|++..+. .+.+ ..++..+..+|...|++++|...+++.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 3444455555555555555555544321 1111 134444444444444444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-06 Score=78.72 Aligned_cols=169 Identities=10% Similarity=-0.029 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----cc
Q 010458 281 AYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMND-----AEYTCVISSLVKLGEFEKAENIYDEWESISGT-GD----PR 350 (510)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 350 (510)
.+...+..+...|++++|.+.+++........+. ..+..+...+...|++++|...+++..+.... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666677777777777666554221111 11333445566777888888888877653211 11 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC--CCCC-CH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVT---KGIK-P--CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVR--KWVP-DH 421 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~p-~~ 421 (510)
+++.+...|...|++++|...|++..+ .... + ...++..+...|...|++++|+.+++++++... +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677788888888888888888888762 2111 1 125778888889999999999999988875310 1111 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 010458 422 RLITAAYNKLEEQGDIDGA-EHLLVTLRN 449 (510)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 449 (510)
.++..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-06 Score=74.67 Aligned_cols=251 Identities=10% Similarity=0.059 Sum_probs=123.5
Q ss_pred HhCCCcC-cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 186 ISNGQLD-KVPQMLQELKKNTSPDVVTYNLWLAACASQND----------KETAEKAFLELKKTKIDPDWISYSTLTSLY 254 (510)
Q Consensus 186 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 254 (510)
.+.|.++ +|++++..+....+.+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455555 56777777776655566666655444433332 344444444444332 22344444444444
Q ss_pred HhcC--ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 010458 255 IKME--LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGY-KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFE 331 (510)
Q Consensus 255 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (510)
.+.| ++++++.+++.+.+..+. |...|+.-..++...|. ++++++.++.+....+. |...|+.....+...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 4444 244555555555544333 44444444444444444 34444444444443221 3333333333222221000
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCH
Q 010458 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKK-----------GQM 400 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~ 400 (510)
.+ ++ ..-...+.++++++.+.+.....+. |...|+-+-..+.+. +.+
T Consensus 197 ~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DS-------------GP--------QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cc-------------cc--------ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 00 00 0000003456666777766665433 555555444444433 346
Q ss_pred HHHHHHHHHHhhccCCCCCCH-HHHHHHH---HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010458 401 EKVLECFKKAIGSVRKWVPDH-RLITAAY---NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465 (510)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (510)
+++++.++++.+. .|+. ..+..++ ......|..+++...+.++.+.+|....-|.-+...+
T Consensus 255 ~~el~~~~elle~----~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 255 QSELESCKELQEL----EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh----CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 7888888888854 4553 2222221 1222457788888999999988887666676665544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-07 Score=71.08 Aligned_cols=118 Identities=11% Similarity=-0.040 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHH
Confidence 34556666677777777777777777776532 25667777777777788888888888877753 233466777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.++...|++++|...+++..+..+.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 778888888888888888877777777777777777776664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-07 Score=77.01 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=89.4
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSL-YIKMELP--EK 262 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 262 (510)
...|++++|...+++..+..+.+...+..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356778888888888777766677888888888888888888888888876653 3356677777777 6778887 88
Q ss_pred HHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 263 AATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 263 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
|...+++..+..+. +...+..+...+...|++++|...|+++...
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888877544 5667777888888888888888888888774
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=85.03 Aligned_cols=194 Identities=10% Similarity=0.017 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 010458 243 DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVIS 322 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 322 (510)
+...+..+...+.+.|++++|...|++..+..+. +...|..+..+|...|++++|...+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3445556666666667777777777666665333 556666666667777777777777766655321 13455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
++...|++++|...|+...+..+. +...+...+....+. ..+.. +..........+......+. .+ ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLT-RL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHHHHH
Confidence 667777777777777666653321 111111112111111 11111 11122222233333333332 22 2577777
Q ss_pred HHHHHHHHhhccCCCCCCHHH-HHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 010458 403 VLECFKKAIGSVRKWVPDHRL-ITAAYNKLEEQ-GDIDGAEHLLVTLRN 449 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~ 449 (510)
|++.++++.+. .|+... ...+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG----HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT----TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc----ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 87777777742 454433 33333334443 567778888876654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-07 Score=72.12 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.++. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444444444444444444444444332 223444444444444444444444444444444322 3444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|+..|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44444444444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-08 Score=84.82 Aligned_cols=198 Identities=9% Similarity=-0.066 Sum_probs=137.5
Q ss_pred hcCChHHHHHHHHHHHHccCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHhcCCCCh--------------
Q 010458 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSL-------LSLYTNMGYKDEVLRIWKKMMSLFAKMND-------------- 314 (510)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 314 (510)
..++...|.+.|.++.+..+. ....|..+ ...+...++..+++..+..... +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 567888888888888877554 56667666 4555555555555555544433 22211
Q ss_pred --------hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 010458 315 --------AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC--Y 384 (510)
Q Consensus 315 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 384 (510)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345667788899999999998877543 322255566668888999999999998665431 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
..+..+..++...|++++|++.|+++... ...|. .........++.+.|+.++|..+|+++...+|. ..++..|.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g--~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDS--PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 36777888899999999999999999863 33253 446777788899999999999999999998887 66666553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-07 Score=74.36 Aligned_cols=97 Identities=6% Similarity=-0.050 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSY 150 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 150 (510)
..+..+...+.+.|++++|+..|+.+.+.+ |.++..|..+..++...|++++|+..|+++....|+ +..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 345555556666666666666666666554 555566666666666666666666666666555543 55566666666
Q ss_pred HhCCCHHHHHHHHHHHHhCC
Q 010458 151 VQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~ 170 (510)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666665543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-07 Score=74.36 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 123344444444444444444444444444443222 33344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMS 307 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~ 307 (510)
.|++++|...++++..
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=90.92 Aligned_cols=164 Identities=9% Similarity=0.016 Sum_probs=90.1
Q ss_pred hcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHH
Q 010458 120 IRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQML 198 (510)
Q Consensus 120 ~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 198 (510)
.+++++|...++...+..| +...+..+...+.+.|++++|...|++..+.. |+...+ ..+.+.+ .
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~ 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQK-A 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHH-H
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHH-H
Confidence 4556667766666655444 36778888888999999999999999888765 333100 0000000 0
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q 010458 199 QELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN 278 (510)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 278 (510)
.. -...+|..+..++.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+..+. +
T Consensus 192 ~~------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~ 263 (336)
T 1p5q_A 192 QA------LRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-N 263 (336)
T ss_dssp HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-C
T ss_pred HH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-C
Confidence 00 013445555555555555555555555554442 234455555555555555555555555555554332 4
Q ss_pred hhhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 010458 279 RVAYSSLLSLYTNMGYKDEV-LRIWKKM 305 (510)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 305 (510)
...+..+..++...|+.+++ ...|+.|
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555 3344444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=78.12 Aligned_cols=107 Identities=9% Similarity=-0.008 Sum_probs=76.5
Q ss_pred HhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCCh
Q 010458 131 ENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDV 209 (510)
Q Consensus 131 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 209 (510)
+++....| +...+..+...+.+.|++++|...|+...+... .+...|..+..++...|++++|+..|++..+..+.+.
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 33444444 356677777777788888888888887777652 2566777777777777777777777777777666677
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKT 238 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 238 (510)
..|..+..++...|++++|...|++..+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777777777664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6.2e-07 Score=72.89 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 395 (510)
.+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+... .+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34555555666666666666666665433 22445555566666666666666666666655432 24455555666666
Q ss_pred hcCCHHHHHHHHHHHhhccCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 010458 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLI--TAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
..|++++|...|+++.+. .+.+...+ ...+..+...|++++|...++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666542 11223333 22222345556666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-07 Score=71.03 Aligned_cols=92 Identities=15% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010458 180 HMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMEL 259 (510)
Q Consensus 180 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 259 (510)
.+...+...|++++|...|++..+..+.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 333333334444444444443333322333334444444444444444444444433321 1223333334444444444
Q ss_pred hHHHHHHHHHHHH
Q 010458 260 PEKAATTLKEMEK 272 (510)
Q Consensus 260 ~~~A~~~~~~~~~ 272 (510)
+++|.+.|++..+
T Consensus 100 ~~~A~~~~~~~~~ 112 (133)
T 2lni_A 100 YTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-07 Score=78.21 Aligned_cols=23 Identities=17% Similarity=-0.025 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLV 376 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~ 376 (510)
.+...+...|++++|...+++..
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444444444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.5e-07 Score=76.59 Aligned_cols=63 Identities=8% Similarity=-0.050 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGS 413 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 413 (510)
.+..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.++++.+.
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345555566666666666666665543100 011 223566777777888888888888877764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=92.54 Aligned_cols=141 Identities=9% Similarity=-0.084 Sum_probs=86.9
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCCh----------------hhHHHHHH
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGP----------------DTCSALLH 148 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~~~l~~ 148 (510)
+++++|++.++...+.. |.....+..+...+.+.|++++|+..|++.....|+. .+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44555666665544432 3456677788888888888888888888887765543 55666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETA 228 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 228 (510)
+|.+.|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+..+.+..++..+..++...|+.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665431 14445555555555666666666666555555444555555555555555555555
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-07 Score=68.78 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+..+. +..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 33444444444444444444444443322 123334444444444444444444444444443221 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|...++++..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=74.65 Aligned_cols=99 Identities=11% Similarity=-0.136 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|+..|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44555555566666666666666666655443 234555556666666666666666666666655433 4555556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 010458 288 LYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~ 308 (510)
+|...|++++|...|++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=75.46 Aligned_cols=102 Identities=14% Similarity=0.003 Sum_probs=67.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...+..+...+...|++++|...|++....++. +...|..+..++...|++++|+..|++++.. .+.+...+..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHH
Confidence 344555666667777777777777777665432 5666666777777777777777777777653 123456666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.++...|++++|...|++..+..+.+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 77777777777777777776665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-06 Score=66.65 Aligned_cols=111 Identities=12% Similarity=-0.014 Sum_probs=80.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
..+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 3456667777778888888888887776532 25667777777788888888888888887763 2335677777788
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
++...|++++|...+++..+.++.++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888888777776666655544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.6e-07 Score=68.10 Aligned_cols=110 Identities=12% Similarity=0.023 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 430 (510)
.+..+...+...|++++|...|++..+..+. +...|..+..++.+.|++++|+..++++++. .+.+...+..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 4455566666777777777777777665422 5566777777777777777777777777753 23345666777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHH
Q 010458 431 LEEQGDIDGAEHLLVTLRNAG------HVSTEIYNSLLRT 464 (510)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~ 464 (510)
+...|++++|...|++..+.+ +.+..++..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 777777777777777776666 4455555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-07 Score=70.09 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 33344444444444444444444443321 123334444444444444444444444444443221 3334444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|...+++...
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=80.42 Aligned_cols=171 Identities=7% Similarity=-0.039 Sum_probs=78.3
Q ss_pred HHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcC
Q 010458 114 LDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLD 192 (510)
Q Consensus 114 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 192 (510)
+......|+++.+.+.|+...+..+ ....+..+...+...|++++|...|++..+.. |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 3344455677777766665443322 24566777778888888888888888887643 221100000
Q ss_pred cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
.....-..+ ...++..+..++...|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+
T Consensus 78 ~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 78 ILLDKKKNI------EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHH------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 000000000 12344455555555555555555555554432 23444555555555555666666655555555
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHH
Q 010458 273 RTCRKNRVAYSSLLSLYTNMGYKDEVL-RIWKKM 305 (510)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~ 305 (510)
..+. +...+..+..++...++.+++. ..+..+
T Consensus 151 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 LNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 4445555555555554444444 333333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=79.68 Aligned_cols=128 Identities=13% Similarity=-0.014 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIK-P--------------CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK 416 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 416 (510)
+..+...+...|++++|...|++..+.... | ....+..+..+|...|++++|+..++++++.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 117 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--- 117 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 344444555555555555555555543211 0 0256777888888888888888888888863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChH-HHHHHHHhC
Q 010458 417 WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPL-IIVERMQKD 482 (510)
Q Consensus 417 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~-~~~~~m~~~ 482 (510)
.+.+...+..+..++...|++++|...|++..+..+.+..++..+..++...++ ++. ..+..|...
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344677888888888888889999888888888888888888888888877766 333 445555433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3e-05 Score=69.92 Aligned_cols=138 Identities=7% Similarity=-0.038 Sum_probs=87.7
Q ss_pred HhccChH-HHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC----------hhhHHHHHHhcccCCC-ChhhHHHHHHH
Q 010458 82 RKLKRYK-HALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG----------LSSAENFFENLPDKMR-GPDTCSALLHS 149 (510)
Q Consensus 82 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 149 (510)
.+.|.+. +|+++++.+...+ |.+..+|+.--.++...++ +++++.+++.+....| +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445544 6888888888765 5555666655554444443 5667777777766655 45666666666
Q ss_pred HHhCC--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC-cCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 150 YVQNK--KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQ-LDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 150 ~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
+...+ .+++++.+++.+.+.... |..+|+.-.-.+...|. ++++++.+.++.+..+.|..+|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 66666 367777777777776533 66667666666666666 36777777777766666777776666555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-06 Score=71.01 Aligned_cols=115 Identities=8% Similarity=-0.040 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHH-HHHhcCh--hhHHHH
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDL-ISKIRGL--SSAENF 129 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~ 129 (510)
++|...+++..+.. +.+...|..+...+...|++++|+..|+.+.+.. |.++..+..+..+ +...|++ ++|...
T Consensus 27 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 27 EAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 67777777776654 5567778888888888888888888888887764 5567777777777 6677887 888888
Q ss_pred HHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010458 130 FENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 130 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (510)
++.+....|+ ...+..+...+...|++++|...|+...+..
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8887777664 6777778888888888888888888887765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-06 Score=67.65 Aligned_cols=113 Identities=14% Similarity=-0.039 Sum_probs=87.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRL 423 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~ 423 (510)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|+..++++.+. .+.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 3455667777788888888888888888875 344 567777888888888899998888888863 2335777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTY 465 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 465 (510)
+..+..++...|++++|...|++..+..+.+...+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888889999999999988888877777776665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.8e-07 Score=70.36 Aligned_cols=99 Identities=12% Similarity=-0.067 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34444455555556666666666666655443 234555555666666666666666666666555433 4455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 010458 288 LYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~ 308 (510)
++...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=69.25 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+..+...+...|++++|...|+++...++. +...|..+..++...|++++|+..|++++.. .+.+...+..+..++
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHH
Confidence 344455555666666666666666554322 4555555666666666666666666666542 122344555566666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
...|++++|...|++..+..|.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-07 Score=68.27 Aligned_cols=103 Identities=10% Similarity=-0.037 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--------hhhH
Q 010458 72 YELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--------PDTC 143 (510)
Q Consensus 72 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~ 143 (510)
.++..+...+.+.|++++|++.|++..+.. |.++..|..+..++...|++++|++.+++..+..|+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456677788888888888888888888775 667778888888888888888888888887665432 2356
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchH
Q 010458 144 SALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPY 178 (510)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 178 (510)
..+..++...|++++|++.|++..+.. ||+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHH
Confidence 667777788888888888888776643 554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=70.67 Aligned_cols=102 Identities=15% Similarity=-0.049 Sum_probs=67.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
..+..+...+...|++++|...|++.++.... +...|..+..+|...|++++|+..|+++++. .+.+...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 34555666666777777777777776665322 5566667777777777777777777777653 2234666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCH
Q 010458 430 KLEEQGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
++...|++++|...|++..+..+.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCch
Confidence 77777777777777777776666543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=64.50 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=68.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC--CHHHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP--DHRLIT 425 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p--~~~~~~ 425 (510)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+. .+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHH
Confidence 345566666677777777777777777766532 25566667777777777777777777777753 222 466677
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhCCCC
Q 010458 426 AAYNKLEEQ-GDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 426 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 453 (510)
.+..++... |++++|.+.++++....+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777777 7777777777777766654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-06 Score=66.71 Aligned_cols=95 Identities=16% Similarity=0.040 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT 290 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (510)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+..+. +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34444444555555555555555544432 223444555555555555555555555555544332 3444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010458 291 NMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (510)
..|++++|...|++...
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-06 Score=66.50 Aligned_cols=101 Identities=15% Similarity=-0.005 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 010458 348 DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAA 427 (510)
Q Consensus 348 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 427 (510)
+...+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|...++++++. .+.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHHHH
Confidence 3444555556666666666666666666554322 4555666666666666666666666666642 12245556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
..++...|++++|...|+++.+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 6666666666666666666654433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-05 Score=74.33 Aligned_cols=195 Identities=9% Similarity=-0.043 Sum_probs=97.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCc----------------chHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCCC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSECGFLKCP----------------LPYNHMLNLYISNGQLDKVPQMLQELKKN--TSPD 208 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~ 208 (510)
...+...|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+... ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888775432211 02455566666666666666666655443 1111
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC-
Q 010458 209 V----VTYNLWLAACASQNDKETAEKAFLELKK----TKIDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKN- 278 (510)
Q Consensus 209 ~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 278 (510)
. .+.+.+...+...|+++.+..+++.... .+..+. ..++..+...|...|++++|..+++++...-...+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1222233333344556666666555421 221222 33445555666666666666666655544311111
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 279 ----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMN----DAEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 279 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
..++..++..|...|++++|..++++..... ...+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2345555555556666666666555544321 1101 1223333444445555555555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.4e-06 Score=64.46 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 247 YSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 247 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555555555555544332 444455555555555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-06 Score=63.84 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3344444444444444444444443322 123344444444444444444444444444443222 33444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMS 307 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~ 307 (510)
.|++++|...+++...
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=65.33 Aligned_cols=99 Identities=11% Similarity=-0.009 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC---hhhHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG---PDTCSAL 146 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l 146 (510)
+...|..+...+...|++++|+..|+...+.. |.+...+..+...+...|++++|...+++..+..|+ ...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34455566666667777777777777766653 445566666666666677777777776666665443 5566666
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHhCC
Q 010458 147 LHSYVQN-KKSAEAEALMEKMSECG 170 (510)
Q Consensus 147 ~~~~~~~-~~~~~A~~~~~~~~~~~ 170 (510)
...+... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6666666 66677766666666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=67.91 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--------hhh
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--------PDT 142 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~ 142 (510)
...|..+...+...|++++|+..|+...+.. |.++..+..+...+...|++++|...++.+....|+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467778888888999999999999988764 667788888888888999999999998887665432 667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 184 (510)
+..+...+...|++++|.+.|+...+.. |+...+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 7788888888899999999988888754 555555444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-05 Score=76.54 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=89.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CCh
Q 010458 217 AACASQNDKETAEKAFLELKKTKIDPDW----------------ISYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KNR 279 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 279 (510)
..+.+.|++++|.+.|.++.+....... ..+..++..|...|++++|.+.+.++...-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4455666777777777666554321110 12445556666666666666666555443111 111
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC--
Q 010458 280 ----VAYSSLLSLYTNMGYKDEVLRIWKKMMSL----FAKMN-DAEYTCVISSLVKLGEFEKAENIYDEWESISGTGD-- 348 (510)
Q Consensus 280 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 348 (510)
.+.+.+...+...|+++++..+++..... +..+. ..++..+...+...|++++|..+++.+...-...+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11222223333445556666555554332 11111 12344555555555555555555555443211111
Q ss_pred ---cchHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 349 ---PRVPNILLAAYINRNQLEMAESFYNRLVTK--GI-KPC---YTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 349 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
..++..++..|...|++++|..++++.... .. .|. ...+..+...+...+++++|...|.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223444555555555555555555554421 01 110 1233334444445555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6.8e-06 Score=63.37 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITAA 427 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~l 427 (510)
+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++++........++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44455555555666666666665555432 244555555556666666666666666655431111112 4455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 428 YNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
..++...|++++|...|+++.+..+ ++..+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 6666666666666666666665544 344443333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=64.90 Aligned_cols=98 Identities=11% Similarity=-0.023 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKL 431 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 431 (510)
+..+...+.+.|++++|...|++.++..+. +...|..+..++...|++++|+..|+++++. -+-+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 445556666777777777777777765432 5666667777777777777777777777753 122455666777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
...|++++|...++++.+.+|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 7777777777777777666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=66.50 Aligned_cols=96 Identities=10% Similarity=-0.159 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYV 151 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 151 (510)
.+..+...+.+.|++++|+..|+...+.. |.++..+..+..++...|++++|+..|++..+..| ++..+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35556677778888888888888888765 66778888888888888888888888888877766 4677788888888
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 010458 152 QNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~ 170 (510)
..|++++|+..|++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888877653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-06 Score=66.59 Aligned_cols=98 Identities=12% Similarity=-0.084 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccC---hhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLV---SGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSA 145 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 145 (510)
+...+..+...+...|++++|+..|+...+.. |.+ ...+..+...+...|++++|+..+++.....| +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44555555555566666666666666655442 222 34455555555555555555555555544433 2444555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 146 LLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=61.93 Aligned_cols=100 Identities=9% Similarity=0.010 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCC----HHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCY---TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPD----HRLITA 426 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~----~~~~~~ 426 (510)
.+...+...|++++|...|+++.+..+. +. ..+..+..++...|++++|...|+++++. .|+ ...+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR----YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----CCCCcccHHHHHH
Confidence 3455566666777777766666654322 22 35556666666777777777777776653 222 455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 010458 427 AYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458 (510)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 458 (510)
+..++...|++++|...|+++.+..|.++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 66677777777777777777766665554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=65.51 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666666666677777777776665543 235566666666677777777777777766665433 4566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 010458 288 LYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~ 308 (510)
+|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 677777777777777666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.9e-06 Score=65.02 Aligned_cols=100 Identities=14% Similarity=-0.025 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 146 (510)
+.+...|..+...+...|++++|+..|+...+.. |.++..+..+..++...|++++|...++.+....|+ +..+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3456677777777888888888888888777764 556777777777777888888888887777766553 6677777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
..++...|++++|...|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777778888887777776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.8e-06 Score=63.41 Aligned_cols=92 Identities=15% Similarity=0.063 Sum_probs=49.0
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccCh---hhHHHHHHHHHHhcChhhHHHHHHhcccCCCC----hhhHHHHHH
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVS---GDYAVHLDLISKIRGLSSAENFFENLPDKMRG----PDTCSALLH 148 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~ 148 (510)
.+...+...|++++|+..|+.+.+.. |.++ ..+..+..++...|++++|...|+.+....|+ +.++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555566666666666555542 2233 34555555555556666665555555544432 344455555
Q ss_pred HHHhCCCHHHHHHHHHHHHhC
Q 010458 149 SYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~ 169 (510)
++...|++++|...|+.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=84.62 Aligned_cols=159 Identities=9% Similarity=-0.030 Sum_probs=89.0
Q ss_pred HhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHH
Q 010458 119 KIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQM 197 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 197 (510)
..+++++|...|+......| ....|..+...+.+.|++++|...|++..+.. |+...+. ++ .
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~------------~~---~ 308 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLS------------EK---E 308 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCC------------HH---H
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCC------------hH---H
Confidence 33456666666665554433 35678888888999999999999999888753 3321100 00 0
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC
Q 010458 198 LQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK 277 (510)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 277 (510)
-..... -...+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+..+.
T Consensus 309 ~~~~~~---~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~- 383 (457)
T 1kt0_A 309 SKASES---FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ- 383 (457)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 000000 023455555666666666666666666655543 234555566666666666666666666666655333
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 010458 278 NRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
+...+..+..++...++.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=4e-06 Score=67.88 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH-HHHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST-EIYNSLL 462 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~ 462 (510)
...|..+..+|.+.|++++|+..++++++. .+.+...|..+..++...|++++|...|++..+.+|.++ .+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356777788888888888888888888863 234567788888888888888888888888888877765 3343333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=64.90 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCC---CCHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGI-KPC----YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWV---PDHR 422 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---p~~~ 422 (510)
++..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|.+.++++.+...... ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344455555555555555555555443110 001 23455566666667777777777666654210110 1133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 423 LITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
.+..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666677777777777777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=63.83 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR-KN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555554433110 01 12444455555555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8e-05 Score=73.29 Aligned_cols=170 Identities=7% Similarity=-0.006 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGE----------FEKAENIYDEWESISGTGDPRVPNILLAAYINRN- 363 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 363 (510)
.++|++.++++...++. +...|+.--.++...|+ ++++.+.++.+.+..++ +..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34567777777664221 23345554445555555 78888888888876543 6667777777777788
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc-------
Q 010458 364 -QLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG-QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ------- 434 (510)
Q Consensus 364 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 434 (510)
+++++...++++.+.+++ |...|+.-...+.+.| .+++++++++++++. .+-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhccccccc
Confidence 668899999998887655 7788888888888888 888899999888863 344677787777776663
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 435 -------GDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 435 -------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
+.++++.+.++++...+|.+...|+.+...+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 567999999999999999999999999888888776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.23 E-value=9.7e-06 Score=77.96 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
..+..+...+.+.|++++|...|++..+........ . -+... +... .....|..+..+|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-~------------~~~~~----~~~~----~~~~~~~nla~~~ 327 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-S------------EKESK----ASES----FLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-C------------HHHHH----HHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-C------------hHHHH----HHHH----HHHHHHHHHHHHH
Confidence 446666666777777777777777766543221100 0 00000 0000 0023444455555
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.+.|++++|+..++++++. .+.+...+..+..+|...|++++|...|+++.+..+.+..++..+..++.+.|+
T Consensus 328 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 5555555555555555542 122344555555555555555555555555555555444455555555554444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-06 Score=62.97 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010458 362 RNQLEMAESFYNRLVTKGI--KPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 439 (510)
.|++++|+..|++.++.+. +.+...+..+...|...|++++|+..|+++++. .+-+..++..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4556666666666665431 112345566666666666666666666666652 22345566666666666677777
Q ss_pred HHHHHHHHHhCCCCCH
Q 010458 440 AEHLLVTLRNAGHVST 455 (510)
Q Consensus 440 A~~~~~~~~~~~~~~~ 455 (510)
|...+++.....+.++
T Consensus 80 A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 80 GVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhCCCcH
Confidence 7776666666655544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-05 Score=78.10 Aligned_cols=119 Identities=12% Similarity=0.041 Sum_probs=55.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010458 323 SLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK 402 (510)
Q Consensus 323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 402 (510)
.+.+.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++|...+++..+.... +...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555432 123445555555555555555555555555554322 34455555555555555555
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 010458 403 VLECFKKAIGSVRKWVPDHRLITAAYNK--LEEQGDIDGAEHLLVT 446 (510)
Q Consensus 403 a~~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 446 (510)
|.+.|+++++. .+.+...+..+..+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 55555555542 01112223333322 4455555555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-05 Score=63.30 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcc------C----------cccChhhHHHHHHHHHHhcChhhHHHHHHhcc
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQY------D----------IKLVSGDYAVHLDLISKIRGLSSAENFFENLP 134 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 134 (510)
...+......+.+.|++++|+..|+...+.- . .|.....|..+..++.+.|++++|+..++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456777888999999999999999987750 0 12334566677777777777777777777777
Q ss_pred cCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010458 135 DKMR-GPDTCSALLHSYVQNKKSAEAEALMEKMSECG 170 (510)
Q Consensus 135 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (510)
...| ++..|..+..+|...|++++|...|+...+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 6655 36677777777777777777777777777654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.8e-06 Score=63.70 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=82.0
Q ss_pred hcCCHHHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--C
Q 010458 396 KKGQMEKVLECFKKAIGSVRK--WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--M 471 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 471 (510)
..|++++|+..|+++++. + -+.+...+..+..+|...|++++|...|+++.+.+|.++.++..+..++...|+ +
T Consensus 2 ~~g~~~~A~~~~~~al~~--~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS--GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 468899999999999964 2 233467889999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHhhcCCcccccc
Q 010458 472 PLIIVERMQKD-NVQMDAETQKVLKITSEMPVSEVS 506 (510)
Q Consensus 472 a~~~~~~m~~~-~~~pd~~t~~~l~~~~~~~~~~~~ 506 (510)
|...+++..+. .-.|+...+...+..+....++.+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~~~ 115 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYADKLDETW 115 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988764 333444445555555544444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=6.6e-06 Score=79.49 Aligned_cols=118 Identities=7% Similarity=-0.061 Sum_probs=74.4
Q ss_pred HHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010458 184 LYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKA 263 (510)
Q Consensus 184 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 263 (510)
.+.+.|++++|.+.|++..+..+.+..+|..+..++.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456666666666666666555566677777777777777777777777776653 33566677777777777777777
Q ss_pred HHHHHHHHHccCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010458 264 ATTLKEMEKRTCRKNRVAYSSLLSL--YTNMGYKDEVLRIWK 303 (510)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 303 (510)
.+.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777765433 44455555554 666677777777776
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7e-05 Score=73.70 Aligned_cols=134 Identities=7% Similarity=-0.051 Sum_probs=91.7
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC----------hhhHHHHHHhcccCCC-ChhhHHHHHHHHHhC
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG----------LSSAENFFENLPDKMR-GPDTCSALLHSYVQN 153 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 153 (510)
...++|++.++.+...+ |....+|+.-..++...|+ ++++++.++.+.+..| +..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34467788888888875 6677777777777777776 7777777777776655 356666666666677
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010458 154 K--KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG-QLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 221 (510)
Q Consensus 154 ~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (510)
+ +++++++.++++.+.+.. +..+|+.-...+.+.| .++++++.++++.+..+.|..+|+....++.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 7 567777777777776533 5666766666666666 66667777776666666666666666655544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.1e-05 Score=71.94 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLL 462 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 462 (510)
+...|..+..+|.+.|++++|++.++++++. .+.+...+..+..+|...|++++|...|+++.+..+.+...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456777777777888888888888888753 2335667777777888888888888888888877777777777777
Q ss_pred HHHHHcCC
Q 010458 463 RTYAKAGK 470 (510)
Q Consensus 463 ~~~~~~g~ 470 (510)
..+...++
T Consensus 349 ~~~~~~~~ 356 (370)
T 1ihg_A 349 KVKQKIKA 356 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.3e-06 Score=74.99 Aligned_cols=145 Identities=11% Similarity=0.012 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010458 315 AEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGY 394 (510)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 394 (510)
..+..+...+.+.|++++|...|++..+.. |+.. .+...|+.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345566666777777888888777766532 2211 1112222333222111 13677788888
Q ss_pred HhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---C
Q 010458 395 LKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK---M 471 (510)
Q Consensus 395 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~ 471 (510)
.+.|++++|+..++++++. .+.+...+..+..+|...|++++|...|+++.+..+.+..++..+......... .
T Consensus 241 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888863 234677888888888888888888888888888777777777776666444333 5
Q ss_pred hHHHHHHHHh
Q 010458 472 PLIIVERMQK 481 (510)
Q Consensus 472 a~~~~~~m~~ 481 (510)
+...|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 6667777754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=5.7e-05 Score=59.55 Aligned_cols=96 Identities=13% Similarity=-0.031 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCccc-------Ch-----hhHHHHHHHHHHhcChhhHHHHHHhcccC--
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKL-------VS-----GDYAVHLDLISKIRGLSSAENFFENLPDK-- 136 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 136 (510)
...+......+.+.|++++|+..|+...+.. |. +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 3446667777888999999999999988864 22 11 26666677777777777777777766665
Q ss_pred -----CCC-hhhH----HHHHHHHHhCCCHHHHHHHHHHHHh
Q 010458 137 -----MRG-PDTC----SALLHSYVQNKKSAEAEALMEKMSE 168 (510)
Q Consensus 137 -----~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (510)
.|+ ...| .....++...|++++|+..|++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 554 4555 6666667777777777777766654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-05 Score=71.86 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+..+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34555556666666666666666666655543 234555555666666666666666666666555332 4444444444
Q ss_pred HHHhcCCHHHH
Q 010458 288 LYTNMGYKDEV 298 (510)
Q Consensus 288 ~~~~~~~~~~a 298 (510)
++...++.+++
T Consensus 350 ~~~~~~~~~~a 360 (370)
T 1ihg_A 350 VKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.99 E-value=8.1e-05 Score=52.97 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
...+..+...+...|++++|+..++++++. .+.+...+..+..++.+.|++++|...+++..+..+.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456667777788888888888888888763 23456777888888888888888888888888887777778877777
Q ss_pred HHHHcC
Q 010458 464 TYAKAG 469 (510)
Q Consensus 464 ~~~~~g 469 (510)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=73.03 Aligned_cols=148 Identities=9% Similarity=-0.008 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010458 140 PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAAC 219 (510)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 219 (510)
...+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+ ....|..+..++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---------~~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---------HHHHHHHHHHHH
Confidence 3445666666777777777777777766543 33221 01111111111111 012455555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHH-HHhcCCHHHH
Q 010458 220 ASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSL-YTNMGYKDEV 298 (510)
Q Consensus 220 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 298 (510)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655442 234555555666666666666666666665544322 33334444333 2233445555
Q ss_pred HHHHHHHHH
Q 010458 299 LRIWKKMMS 307 (510)
Q Consensus 299 ~~~~~~~~~ 307 (510)
..+|+.|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 556655544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00017 Score=56.85 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------c
Q 010458 213 NLWLAACASQNDKETAEKAFLELKKTKIDP------D-----WISYSTLTSLYIKMELPEKAATTLKEMEKR-------T 274 (510)
Q Consensus 213 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 274 (510)
......+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++..+. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555544332110 1 114445555555555555555555555443 2
Q ss_pred CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 275 CRKNRVAY----SSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 275 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+. +...| .....++...|++++|+..|++..+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 22 33344 4444444455555555555544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.3e-05 Score=57.54 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------HH
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS------TE 456 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~ 456 (510)
+...+..+...+...|++++|++.|+++++. .+.+...+..+..++.+.|++++|...+++..+..+.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3455666666777777777777777777653 23356666777777777777777777777777776665 55
Q ss_pred HHHHHHHHHHHcCC
Q 010458 457 IYNSLLRTYAKAGK 470 (510)
Q Consensus 457 ~~~~l~~~~~~~g~ 470 (510)
.+..+..++...|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 80 LQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666666555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-05 Score=60.20 Aligned_cols=99 Identities=9% Similarity=0.025 Sum_probs=74.2
Q ss_pred HHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcCh----------hhHHHHHHhcccCCCC-hhhHHHHHHH
Q 010458 81 LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGL----------SSAENFFENLPDKMRG-PDTCSALLHS 149 (510)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~-~~~~~~l~~~ 149 (510)
..+.+.+++|+..++...+.+ |.++..|..+..++...+++ ++|+..|++..+..|+ ..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345677888888888888875 77888888888888887765 4888888888887774 6778888888
Q ss_pred HHhCC-----------CHHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 010458 150 YVQNK-----------KSAEAEALMEKMSECGFLKCPLPYNHMLN 183 (510)
Q Consensus 150 ~~~~~-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 183 (510)
|...| ++++|++.|++..+.+ |+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 87664 7888888888877754 66655544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00016 Score=54.20 Aligned_cols=81 Identities=6% Similarity=-0.052 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 192 DKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
++|++.|++..+..+.+...+..+..++...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356666666666655566777777777777777777777777766543 2345666677777777777777777777766
Q ss_pred Hc
Q 010458 272 KR 273 (510)
Q Consensus 272 ~~ 273 (510)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.5e-06 Score=61.52 Aligned_cols=67 Identities=10% Similarity=-0.021 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
...|..+...+...|++++|+..|+...+.. |.++..+..+..++...|++++|+..+++.....|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3455556666666666666666666666553 445556666666666666666666666666555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00073 Score=52.58 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010458 329 EFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVL 404 (510)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 404 (510)
++++|.+.|++..+.+ ++... +...|...+.+++|..+|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666554 22222 5555555566666777777666653 45566666666665 66777777
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEE----QGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 452 (510)
++|+++.+. -++..+..+...|.. .++.++|.++|++..+.|.
T Consensus 82 ~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL-----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC-----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 777777653 345666666666666 6677777777777766653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0001 Score=55.36 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 368 AESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 368 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
|...|++..+..+ .+...+..+...+...|++++|+..|+++++. .+.+...+..+..++...|++++|...|++.
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555544332 14445555555555555555555555555542 1223445555555555555555555555555
Q ss_pred HhC
Q 010458 448 RNA 450 (510)
Q Consensus 448 ~~~ 450 (510)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.73 E-value=7.9e-05 Score=71.53 Aligned_cols=97 Identities=8% Similarity=-0.034 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCC-CCC-cchHHHHHHHHHhCCCcCcHHHHHHHHHhC-------CC
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSE-----CGF-LKC-PLPYNHMLNLYISNGQLDKVPQMLQELKKN-------TS 206 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~ 206 (510)
.+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|...|...|++++|..++++..+. ..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444455555555555444444332 110 111 123444555555555555555555443321 11
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 207 P-DVVTYNLWLAACASQNDKETAEKAFLELKK 237 (510)
Q Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 237 (510)
| ...+.+.+..++...+.+++|+.+|.++++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 123344555566666667777777766654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00092 Score=52.02 Aligned_cols=12 Identities=25% Similarity=0.025 Sum_probs=4.5
Q ss_pred ChHHHHHHHHHH
Q 010458 259 LPEKAATTLKEM 270 (510)
Q Consensus 259 ~~~~A~~~~~~~ 270 (510)
++++|.+.|++.
T Consensus 76 d~~~A~~~~~~A 87 (138)
T 1klx_A 76 DLRKAAQYYSKA 87 (138)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 333333333333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00019 Score=50.93 Aligned_cols=79 Identities=9% Similarity=-0.041 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHH
Q 010458 71 KYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHS 149 (510)
Q Consensus 71 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~ 149 (510)
...+..+...+...|++++|+..|+...+.. |.++..+..+..++...|++++|...+++..+..|+ +..+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445556666666666666666666666553 445555666666666666666666666665555442 4444444444
Q ss_pred HH
Q 010458 150 YV 151 (510)
Q Consensus 150 ~~ 151 (510)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00029 Score=67.65 Aligned_cols=61 Identities=11% Similarity=-0.079 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----cCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKR-----TCR-K-NRVAYSSLLSLYTNMGYKDEVLRIWKKM 305 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 305 (510)
.+++.|...|...|++++|..++++..+. |.. | ...+++.|...|...|++++|..++++.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555555555555555555555554332 111 1 1234455555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00019 Score=56.44 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhccCCCCC-CHHHHHHHHHH
Q 010458 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ----------MEKVLECFKKAIGSVRKWVP-DHRLITAAYNK 430 (510)
Q Consensus 362 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 430 (510)
.+.+++|...++...+.++. +...|..+..++...++ +++|+..|+++++. .| +..+|..+..+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l----dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh----CcCcHHHHHHHHHH
Confidence 34455555555555554322 44445444444444443 34666666666642 33 34566666666
Q ss_pred HHHcC-----------CHHHHHHHHHHHHhCCCCCH
Q 010458 431 LEEQG-----------DIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 431 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~ 455 (510)
|...| ++++|.+.|+++.+.+|.+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 66553 67777777777777766553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00059 Score=49.61 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
...+..+..+|...|++++|...|++..+.++. +...|..+..+|...|++++|++.|++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444455555555555555555555544322 33344445555555555555555555444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00049 Score=50.05 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccC
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDK 136 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 136 (510)
+-+...+..+...+.+.|++++|+..|+...+.. |.++..|..+..++...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456667777777777777777777777777764 556667777777777777777777777765543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0099 Score=53.84 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHH
Q 010458 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLIT 425 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 425 (510)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL----~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL----RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcChHH
Confidence 3345555555555555677777777777766653 56556666666666677777777777766643 56665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.025 Score=51.21 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=42.8
Q ss_pred CCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010458 173 KCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISY 247 (510)
Q Consensus 173 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 247 (510)
.++.+|..+...+...|++++|...+++..... |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 344555555555555566666666666666553 55555656666666666777766666665554 3444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0046 Score=44.44 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=30.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Q 010458 393 GYLKKGQMEKVLECFKKAIGSVRKWVPDHR-LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 393 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
.+...|++++|+..|+++++. .+.+.. .+..+..++...|++++|...|++..+.++.+...
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 344455555555555555532 122334 45555555555555555555555555555544333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0022 Score=60.40 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccC-----CCC----hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDK-----MRG----PDTCSALLHSYVQNKKSAEAEALMEKM 166 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (510)
+++.++.+|...|++++|+.++++..+. |++ ..+++.|...|...|++++|+.++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444444444445555444444443321 221 233444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0053 Score=43.64 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=29.4
Q ss_pred cChhhHHHHHHHHHHhcC---hhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 105 LVSGDYAVHLDLISKIRG---LSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 105 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
.++..+..+..++...++ .++|..++++....+|+ +.....+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432222 34445555444444432 344444444444555555555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0026 Score=45.77 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 010458 252 SLYIKMELPEKAATTLKEMEKRTCRKNRV-AYSSLLSLYTNMGYKDEVLRIWKKMMSL 308 (510)
Q Consensus 252 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 308 (510)
..+.+.|++++|...|++..+..+. +.. .+..+..++...|++++|...|++....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555544322 334 4555555555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0061 Score=57.53 Aligned_cols=84 Identities=7% Similarity=-0.071 Sum_probs=40.3
Q ss_pred HhcChhhHHHHHHhcccC-----CCC----hhhHHHHHHHHHhCCCHHHHHHHHHHHHh-----CC-CCCC-cchHHHHH
Q 010458 119 KIRGLSSAENFFENLPDK-----MRG----PDTCSALLHSYVQNKKSAEAEALMEKMSE-----CG-FLKC-PLPYNHML 182 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~ 182 (510)
..|++++|+.++++..+. +++ ..+++.+..+|...|++++|+.++++... .| ..|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445555555555544322 221 34455555555555555555555554432 11 0111 12355555
Q ss_pred HHHHhCCCcCcHHHHHHHHH
Q 010458 183 NLYISNGQLDKVPQMLQELK 202 (510)
Q Consensus 183 ~~~~~~g~~~~a~~~~~~~~ 202 (510)
..|...|++++|..++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55555666555555555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.011 Score=43.10 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Q 010458 383 CYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK----WVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIY 458 (510)
Q Consensus 383 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 458 (510)
+..-+-.|...+...|++..|..+|+.+++.... -.+...++..+..++.+.|+++.|...++++.+..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445556777777788888888888777764111 123456777888888888888888888888888777766554
Q ss_pred HHH
Q 010458 459 NSL 461 (510)
Q Consensus 459 ~~l 461 (510)
+.+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.02 Score=44.47 Aligned_cols=89 Identities=9% Similarity=0.024 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHcCCHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKG---QMEKVLECFKKAIGSVRKWVP--DHRLITAAYNKLEEQGDIDG 439 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 439 (510)
+..+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+|+...+. . .| +...+..+.-++.+.|++++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CccchHHHHHHHHHHHHHccCHHH
Confidence 4456666666666554 57777778888888887 556888888888874 2 24 35566777778888899999
Q ss_pred HHHHHHHHHhCCCCCHHH
Q 010458 440 AEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 440 A~~~~~~~~~~~~~~~~~ 457 (510)
|++.++.+.+..|.+...
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999988888876443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0065 Score=43.18 Aligned_cols=70 Identities=11% Similarity=-0.080 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhccC---hHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 68 TVHKYELNRIVRELRKLKR---YKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
+.++..+..+..++...++ .++|..++++..+.+ |.++.....+...+...|++++|+..|+.+.+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888887765444 688999999988876 778888888888888999999999999998888766
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.047 Score=47.38 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhc-CCH
Q 010458 225 KETAEKAFLELKKTKIDPD---WISYSTLTSLYIKM-----ELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNM-GYK 295 (510)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 295 (510)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777665 344 45677788888873 88888888888888875543467777778887774 888
Q ss_pred HHHHHHHHHHHHhcCC
Q 010458 296 DEVLRIWKKMMSLFAK 311 (510)
Q Consensus 296 ~~a~~~~~~~~~~~~~ 311 (510)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888876555
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.027 Score=58.33 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=23.9
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 235 (510)
...|++++|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555554322 24455555556666666666666555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.13 Score=38.39 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=34.0
Q ss_pred chHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 176 LPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
......+......|+-++..+++..+....+|++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444445555555555555555554444455555555555555555555555555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.16 Score=44.17 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=65.6
Q ss_pred hHHHHHHhcccCCCChhhHHHHHH-HHHhC--CC------HHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHh-----
Q 010458 125 SAENFFENLPDKMRGPDTCSALLH-SYVQN--KK------SAEAEALMEKMSECGFLKC---PLPYNHMLNLYIS----- 187 (510)
Q Consensus 125 ~A~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~------~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----- 187 (510)
.-.+.+.+..+..+....|..++. .++.. |+ ...|...+++..+.. |+ ...|..+...|.+
T Consensus 139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~ 216 (301)
T 3u64_A 139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESF 216 (301)
T ss_dssp HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTT
T ss_pred hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCcc
Confidence 333444444433334556665554 23332 22 355666666666644 44 3466667766766
Q ss_pred CCCcCcHHHHHHHHHhCCCC-ChhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 010458 188 NGQLDKVPQMLQELKKNTSP-DVVTYNLWLAACASQ-NDKETAEKAFLELKKTKID 241 (510)
Q Consensus 188 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~ 241 (510)
.|+.++|.+.|++..+..+. +..++......++.. |+.+.+.+.+++.......
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 36777777777776665443 366666666666663 6677777777776665544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0072 Score=56.98 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----cC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKR-----TC-RKN-RVAYSSLLSLYTNMGYKDEVLRIWKKMM 306 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (510)
.+++.|...|...|++++|+.++++..+. |. .|+ ..+++.|...|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34455555555555555555555554432 11 111 2234555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.54 E-value=3.2e-06 Score=77.77 Aligned_cols=265 Identities=9% Similarity=0.070 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHS 149 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 149 (510)
.+..|..|.++....++..+|++.|=+ ..|+..|..++....+.|++++-.+++....+...++.+=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 345688888888888888888766522 2477788888999999999999999988888776777777888999
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 010458 150 YVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAE 229 (510)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 229 (510)
|++.++..+-.+++ . .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|+++.|.
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN--------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC--------CTTTSSSSSSCSGGGSST
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHH
Confidence 99988865543332 2 27777778888888888888888877775432 233444455555555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 010458 230 KAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309 (510)
Q Consensus 230 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (510)
+.-++ ..++.||..+-.+|...+.+.-|.-.--.+.- .......++..|-..|-+++-+.+++.....
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl- 258 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL- 258 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 32211 22445666666666666666555443333332 1112233445555666666666666554421
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCC------CCcchHHHHHHHHHhcCCHHHHH
Q 010458 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESI-SGT------GDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
-+.....|+-|.-.|++- ++++..+.++..... +++ -....|..++..|++-.+++.|.
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 222334455555444432 334433333322210 110 12334555666666555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.16 Score=37.96 Aligned_cols=140 Identities=18% Similarity=0.102 Sum_probs=91.9
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHH
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
...|..++..++..+..... +..-|+.+|.-....-+-+-..++++.+-+ -.|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHH
Confidence 34677788888877776542 445567776666666666666666665543 22221 234444333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 370 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
..+-.+- .+.......+..+..+|.-++..+++...+. +.+|++.....+..+|.+.|+..+|.+++.++.+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~---n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc---cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3332221 1445566677778888888888888888654 5578888888888899999999999999988888
Q ss_pred CCCC
Q 010458 450 AGHV 453 (510)
Q Consensus 450 ~~~~ 453 (510)
.|.+
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.018 Score=54.23 Aligned_cols=88 Identities=13% Similarity=-0.019 Sum_probs=43.8
Q ss_pred HHhcCChHHHHHHHHHHHHcc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCC----hhhHHH
Q 010458 254 YIKMELPEKAATTLKEMEKRT---CRKN----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSL---FAKMN----DAEYTC 319 (510)
Q Consensus 254 ~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~ 319 (510)
+.+.|++++|+..+++..+.. ..|+ ..+++.+..+|...|++++|+.+++++... -..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344555566666555554330 1111 234555555666666666666655555432 01111 133555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010458 320 VISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 320 l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
+...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5556666666666666655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.30 E-value=1.2 Score=45.74 Aligned_cols=259 Identities=13% Similarity=0.053 Sum_probs=132.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC-------CCChhhHHHHHH
Q 010458 217 AACASQNDKETAEKAFLELKKTK--IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTC-------RKNRVAYSSLLS 287 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~ 287 (510)
-+....|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566778888877776654321 112233334455556666766677777776655321 011112223333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 010458 288 LYTNMGY-KDEVLRIWKKMMSLFAKMNDA--EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQ 364 (510)
Q Consensus 288 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (510)
+++-.|. -+++.+.+..+..... +... .-..+...+...|+.+....++..+.+.. .-+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 2455666666554311 1111 11223334456688888888887766532 1112222333344556788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010458 365 LEMAESFYNRLVTKGIKPCYTTW--ELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEH 442 (510)
Q Consensus 365 ~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 442 (510)
.+.+..+++.+.... .|....- ..+..+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 888888888887641 2222211 23445677788887777788888763 22233333333334455677666666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCC---ChHHHHHHHHh
Q 010458 443 LLVTLRNAGHVSTEIYNSLLRTYAKAGK---MPLIIVERMQK 481 (510)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~a~~~~~~m~~ 481 (510)
+++.+.+.+-+...--..+.-+....|+ .++.++..+..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6665555432222222223333333333 56666666653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.054 Score=42.01 Aligned_cols=80 Identities=14% Similarity=0.024 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHccCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRK--NRVAYSSLLSLYTNMGYKDEVLR 300 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 300 (510)
..+.+-|.+..+.|. ++..+...+..++++++ +.++++.+|++..+.. .| ....+..+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 444555555444443 55555556666666666 4456677777666653 12 34455556666677777777777
Q ss_pred HHHHHHH
Q 010458 301 IWKKMMS 307 (510)
Q Consensus 301 ~~~~~~~ 307 (510)
+++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777666
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.05 Score=56.34 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=86.3
Q ss_pred HhccChHHHHH-HHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHH
Q 010458 82 RKLKRYKHALE-VCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAE 160 (510)
Q Consensus 82 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 160 (510)
...+++++|.+ ++..+. +......++..+.+.|..++|.++.+.. ..-.......|+++.|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHH
Confidence 45677777765 442211 0223356666667777777777655321 11123345567777777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010458 161 ALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKI 240 (510)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 240 (510)
++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-+.....|-
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 764332 3556777777777777777777777776642 33444445556666655555555444431
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 241 DPDWISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 241 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
++....+|.+.|++++|.+++.++.
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2333444555666666666665554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.09 Score=41.91 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=52.1
Q ss_pred HHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcH
Q 010458 115 DLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKV 194 (510)
Q Consensus 115 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 194 (510)
......|+++.|.++.+.+. +...|..|.+.....|+++-|.+.|..... +..+.-.|.-.|+.++.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455566666666655441 455666666666666666666666655443 33444444455555444
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 195 PQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
.++-+.....+ -++....++...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g-----~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE-----DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT-----CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc-----cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43333322221 133334444455666666666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.14 Score=38.20 Aligned_cols=97 Identities=7% Similarity=0.008 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhccCCCCC--CHHHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEK---VLECFKKAIGSVRKWVP--DHRLITAAYNKL 431 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~ 431 (510)
........+..+.+-|.+....|. |+..+--.+.+++.+.++... ++.+++..... + .| .......+.-++
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--S-CHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CcchHHHHHHHHHHHH
Confidence 333344455566666766666554 677777788888888887665 88888888763 2 23 334556677788
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHH
Q 010458 432 EEQGDIDGAEHLLVTLRNAGHVSTEI 457 (510)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~~~~~ 457 (510)
.+.|++++|++.++.+.+..|.+..+
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999988876443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.077 Score=40.61 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 010458 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAK 467 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (510)
.++.++|.++|+.+++.-+++ ..+|......-.++|+.+.|++++.+....++.+.....+.+.-+-.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNL 140 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhc
Confidence 367888888888887642233 67777777777889999999999999999988888888887776543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.081 Score=38.32 Aligned_cols=64 Identities=9% Similarity=-0.140 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTK------IDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..+..+...+.+.++++.|...|+...+.. -.+....+..|..++.+.|+++.|...++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455555566666666666665543310 1123445555666666666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.42 Score=38.08 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 010458 280 VAYSSLLSLYTNMGYKDEVLRIWK 303 (510)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~ 303 (510)
..|..|.......|+++-|...|.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 344444444444444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.28 Score=37.57 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010458 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIK 381 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 381 (510)
+|+++|.++|+.+.+.+-. -...|-.....-.++|++..|.+++...+..+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4555555555555443111 1333444444444556666666666666555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.25 E-value=4.7e-06 Score=76.65 Aligned_cols=265 Identities=8% Similarity=0.080 Sum_probs=178.3
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 185 (510)
.+.+|..++.+....+++.+|++.|-+.. |+..|..++.+..+.|.++.-.+.+.-.++.. .++..=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 56778888888888888888877665543 67788888888889999988888877665543 3555557888899
Q ss_pred HhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAAT 265 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 265 (510)
++.++..+..+++ ..||..-...+..-|...|.++.|.-+|..+. .|.-|..++.+.|++..|.+
T Consensus 127 Ak~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 127 AKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTT
T ss_pred HhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHH
Confidence 9988877654332 34676667778888888888888887775442 24456666777888877765
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 010458 266 TLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISG 345 (510)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 345 (510)
.-++. .++.||..+-.+|...+.+.-|.-.--.+.- .......++..|-..|.+++-+.+++......
T Consensus 192 aArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 192 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp TTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 43322 3778999999999999998876554433332 22224446667788899999888888776321
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 010458 346 TGDPRVPNILLAAYINRNQLEMAESFYNRLVTK-GIK------PCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
....-+|+.|.-.|++- +.++..+.++..-.+ +++ -....|.-++-.|.+-.+++.|.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 34556788888777765 445544444332221 111 02234666666666666666543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=3.2 Score=40.90 Aligned_cols=116 Identities=8% Similarity=0.001 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 293 GYKDEVLRIWKKMMSLFAKMNDAEY----TCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
.+.+.|...+....... ..+.... ..+.......+...++...+...... ..+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888776543 2233222 22222223334244555555554432 23333333444445567888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
...|+.|...... ...-.--+..++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888877653211 222233455567778888888888888764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.58 Score=43.35 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH-----hCCCCCCHHHHHHHHh
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ-----KDNVQMDAETQKVLKI 496 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~-----~~~~~pd~~t~~~l~~ 496 (510)
...++..+...|++++|...+..+....|.+...|..++.++.+.|+ +|++.|++.. +.|+.|+..+-...-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44566777888999999999999988888888899999999999999 8888887764 3599999888655544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.24 E-value=3.7 Score=38.68 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCcCcHHHHHHHHHhC-CCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC--HHHH
Q 010458 180 HMLNLYISNGQLDKVPQMLQELKKN-TSP-D----VVTYNLWLAACASQNDKETAEKAFLELK----KTKIDPD--WISY 247 (510)
Q Consensus 180 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~--~~~~ 247 (510)
.|...+...|++.+|.+++..+... ... + ...+...++.|...+|+..|..++.++. .....|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444555555555555555555433 111 1 2344445556666666666666665542 1111121 1223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
...+..+...+++.+|-+.|.++.+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455555556666666655555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.80 E-value=4.5 Score=38.10 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHH----hcC
Q 010458 223 NDKETAEKAFLELKK-----TKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYT----NMG 293 (510)
Q Consensus 223 ~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 293 (510)
++++.|.+.+-.+.+ .+..........++..|...|+++...+.+..+.+..-. -......+++.+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 667777776655532 223445666777788888888888777766665543111 1122223333222 122
Q ss_pred CHHHHHHHHHHHHHhcCCCChh---------hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-----cchHHHHHHHH
Q 010458 294 YKDEVLRIWKKMMSLFAKMNDA---------EYTCVISSLVKLGEFEKAENIYDEWESISGTGD-----PRVPNILLAAY 359 (510)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 359 (510)
..+.... ...+.......+.. ....+...+...|++.+|.+++..+...-...+ ...+...++.|
T Consensus 109 ~~d~~~~-~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTR-ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHH-HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2221111 01110000000111 123455556666666666666666653211111 22344455566
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 360 INRNQLEMAESFYNRLVT----KGIKPCY--TTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 360 ~~~g~~~~A~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
...+++..|..+++++.. ....|+. ..+...+..+...+++.+|.+.|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666666666666665432 1111111 1344455555566666666666666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.71 E-value=7.3 Score=40.19 Aligned_cols=346 Identities=9% Similarity=-0.011 Sum_probs=177.8
Q ss_pred HHHHHHHHhcChhhH-HHH-HHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHh
Q 010458 112 VHLDLISKIRGLSSA-ENF-FENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCP--LPYNHMLNLYIS 187 (510)
Q Consensus 112 ~l~~~~~~~g~~~~A-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 187 (510)
.+..++...|-..+. ... .+++.+..+....-....-+....|+.++++.+++.....+-..+. ..-..+.-+...
T Consensus 344 ~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ 423 (963)
T 4ady_A 344 SVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY 423 (963)
T ss_dssp HHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc
Confidence 455666666643322 221 2233332112233333344566778888887777665542101122 222333444555
Q ss_pred CCCcCcHHHHHHHHHhCCC--------CChhHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHH
Q 010458 188 NGQLDKVPQMLQELKKNTS--------PDVVTYNLWL--AACASQNDKETAEKAFLELKKTKIDPDWISYS--TLTSLYI 255 (510)
Q Consensus 188 ~g~~~~a~~~~~~~~~~~~--------~~~~~~~~l~--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~ 255 (510)
.|..+++..++........ +....-..+. .++.-.++ +++.+.+..+.... .+...... +|...+.
T Consensus 424 ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~v 501 (963)
T 4ady_A 424 AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhc
Confidence 6655567776666554311 1111122222 22233344 34455555544322 11111122 3344455
Q ss_pred hcCChHHHHHHHHHHHHccCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHH
Q 010458 256 KMELPEKAATTLKEMEKRTCRKNRVAYSSL--LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAE--YTCVISSLVKLGEFE 331 (510)
Q Consensus 256 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 331 (510)
-.|+.+....++..+.+.. +......+ .-++...|+.+.+..+.+.+... ..|.... -..+..+|+..|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 6677777777777766531 22333333 33444678888888888877653 2222111 123345677788887
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 010458 332 KAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM-EKVLECFKKA 410 (510)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 410 (510)
...+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+..+....|.. .++++.+..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 7777888877532 2233333344445555677777777777666543 34444444444555545443 5788888888
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHcCC
Q 010458 411 IGSVRKWVPDHRLITAAYNKLEEQG---------DIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKAGK 470 (510)
Q Consensus 411 ~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 470 (510)
... +|..+-...+.++...| +....++.+.......-. +...-..+..+....|.
T Consensus 656 ~~D-----~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 656 TKD-----PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HTC-----SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred ccC-----CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 753 55555544444444332 456666655555543333 34555666777777776
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.64 Score=34.60 Aligned_cols=84 Identities=10% Similarity=-0.082 Sum_probs=47.2
Q ss_pred cChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhh---HHHHHHhcccCC-C--ChhhHHHHHHHHHhCCCHHH
Q 010458 85 KRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSS---AENFFENLPDKM-R--GPDTCSALLHSYVQNKKSAE 158 (510)
Q Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~ 158 (510)
.....+.+-|......+ +++..+-..+..++.+..+... ++.+++.+...+ | .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34444555555544443 3555555556666665554444 666666666554 3 13344445556667777777
Q ss_pred HHHHHHHHHhCC
Q 010458 159 AEALMEKMSECG 170 (510)
Q Consensus 159 A~~~~~~~~~~~ 170 (510)
|.+.++.+.+..
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 777777766643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.29 E-value=1.4 Score=30.95 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
+.-+..+-++.+... .+.|++.+..+.+++|.+.+++..|.++++-++..--....+|..++.-
T Consensus 25 D~~e~rrglN~l~~~--DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGY--DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTS--SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 455677777777766 7888999998889999999999999999888876544444567666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.06 E-value=2.7 Score=45.19 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 010458 111 AVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKM 166 (510)
Q Consensus 111 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (510)
..++..+...+..+.+.++...... ++...-.+..++...|++++|.+.|.+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455556666666666665544432 3333344555666677777777777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.24 E-value=2.8 Score=31.40 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 010458 379 GIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 379 ~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
+..|+..+--.+.+++.+..+. .+++.+++...+. +-.-....+..+.-++.+.|++++|++..+.+.+..|.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3456666666677777776654 3677777777754 2111344556666778888888888888888888777653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.78 E-value=6.8 Score=34.89 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH----HHHHhCCCCCCcchHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM----EKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~p~~~~~~~l~~~ 184 (510)
.|..+..-|.+.+++++|++++-.- ...+.+.|+...|-++- +-+.+.++++|......++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555666777777777765442 22244455554444332 444455666666555555555
Q ss_pred HHhCCCcCcH-HHHHHHHHh-----C--CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 185 YISNGQLDKV-PQMLQELKK-----N--TSPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 185 ~~~~g~~~~a-~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
+.....-+-. .++.+.+.+ . ..-|......+...|.+.+++.+|...|
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4443321100 111111111 0 1114455555566666666666665555
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.02 E-value=3.1 Score=31.08 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
+.-+..+-++.+... .+.|++.+....+++|.+.+++..|.++|+-++.+--....+|..++.-
T Consensus 68 D~wElrrglN~l~~~--DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGY--DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTS--SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 444666777777766 7889999999999999999999999999998876654445567776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.94 E-value=14 Score=39.68 Aligned_cols=171 Identities=9% Similarity=0.007 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010458 141 DTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACA 220 (510)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (510)
.....++..+...+..+.+.++..... .++..--.+..++...|++++|.+.|++.......+....
T Consensus 813 ~~~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-------- 879 (1139)
T 4fhn_B 813 DLVTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-------- 879 (1139)
T ss_dssp CHHHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC--------
T ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh--------
Confidence 344457777888888888776554322 2444444567788899999999999987654311110000
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCh----hhHHHHHHHHHhcCCHH
Q 010458 221 SQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNR----VAYSSLLSLYTNMGYKD 296 (510)
Q Consensus 221 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 296 (510)
........+...... ...-..-|..++..+-+.+.++.+.++-+...+.....+. ..|..+.+.+...|+++
T Consensus 880 --~~~~~~~~~~~~~~~--~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 --AVLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp --SSHHHHHHHHHTTTS--CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred --hhhcccccccccccc--cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 000010011100000 0112233555666666666666666666555543211111 14666677777777777
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 010458 297 EVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEF 330 (510)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 330 (510)
+|...+-.+..... -...+..++..+|..|..
T Consensus 956 ~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 956 AAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 77666655543221 223455555555554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.88 E-value=2.9 Score=42.13 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=34.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010458 392 WGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTL 447 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (510)
.-+...|+++-|+++-++++.. .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3345567777777777777642 2334667777777777777777777666655
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.86 E-value=1.2 Score=44.86 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=73.5
Q ss_pred hcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcc----CCCCCC-----------HHH
Q 010458 361 NRNQ-LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ-MEKVLECFKKAIGSV----RKWVPD-----------HRL 423 (510)
Q Consensus 361 ~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~----~~~~p~-----------~~~ 423 (510)
..++ ++.|..+|+++.+..+.-+......++..+...++ --+|.+++.+.++.. ....+. ...
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3444 57788888887776322111112223333333332 225555555554310 011111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHH
Q 010458 424 ITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERM 479 (510)
Q Consensus 424 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m 479 (510)
...=.+.|...|+++.|+++-++....-|..-.+|..|..+|...|+ .|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 22224556788999999999999999999999999999999999999 787777776
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.58 E-value=1.5 Score=34.32 Aligned_cols=118 Identities=5% Similarity=-0.066 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH-H
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESI-SGTGDP-------RVPNILLAAYINRNQLEMAESFYNRLVTKG-IKPCYT-T 386 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~-~ 386 (510)
+..-+..+...+.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.+... .-+... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444455666677777777666664432 123332 134556666667777777777777654311 111111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010458 387 WELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRN 449 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (510)
...+. .....+. .. ...++...-.-+..+|.+.|++++|+.+++.+..
T Consensus 103 ~~~~~---~~ss~p~----------s~--~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTG---NSASTPQ----------SQ--CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc---ccCCCcc----------cc--cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10010 0000000 00 2233455666688899999999999999887643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.88 E-value=2.4 Score=31.75 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=34.5
Q ss_pred CCCcchHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 346 TGDPRVPNILLAAYINRNQ---LEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.|++.+--.+..++++..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444555555443 334555555555543211233444555566666666666666666663
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=1.6 Score=40.36 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----cCCCChhhH
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR-----TCRKNRVAY 282 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~ 282 (510)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+. |+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666777788888877777765543 446667778888888888888888877776542 777766543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.16 E-value=7.1 Score=29.64 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 010458 381 KPCYTTWELLTWGYLKKGQME---KVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
.|+..+--.+.+++.++.+.+ +++.+++..... +-.-.......+.-++.+.|++++|++..+.+.+..|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 567777667777777776544 677788777753 2111334555666788888888888888888888888763
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.04 E-value=2.1 Score=33.50 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMEL 99 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 99 (510)
++..+.+++...|++..|...|++..+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456778899999999999999999654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.30 E-value=2 Score=36.77 Aligned_cols=58 Identities=9% Similarity=-0.060 Sum_probs=35.7
Q ss_pred HHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC
Q 010458 80 ELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG 139 (510)
Q Consensus 80 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 139 (510)
.+.+.|++++|++....-.+.. |.+......+++.+|-.|+++.|.+-++...+..|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4455666666666666655553 556666666666666666666666666665555443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.30 E-value=6.7 Score=27.43 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=58.4
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
....++|..+-+++...+ ....+-..-+..+...|++++|..+.+... .||...|.+|-. .+.|-.+++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---QDEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 347788999998888764 122233333456778999999999888877 578888877655 3678888888888
Q ss_pred HHHHhCC
Q 010458 164 EKMSECG 170 (510)
Q Consensus 164 ~~~~~~~ 170 (510)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7887765
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.09 E-value=7 Score=27.40 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 010458 84 LKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALM 163 (510)
Q Consensus 84 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (510)
....++|..+-+++...+ ....+-..-+..+...|++++|..+.+... .||...|.+|-.. +.|-.+++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 347788888888888764 122223333456778899999999988877 5788888777654 568888888878
Q ss_pred HHHHhCC
Q 010458 164 EKMSECG 170 (510)
Q Consensus 164 ~~~~~~~ 170 (510)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7777765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.07 E-value=11 Score=35.24 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CChhhHH----
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCR--KNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAK-MNDAEYT---- 318 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~---- 318 (510)
+...+...|.+.|+++.|.+.|.++...-.. .-...+-.+++.+...+++..+...+.++...-.. ++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455677777777777777777777664222 12345566677777777777777777776543111 1211111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 010458 319 CVISSLVKLGEFEKAENIYDEWES 342 (510)
Q Consensus 319 ~l~~~~~~~~~~~~a~~~~~~~~~ 342 (510)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123356778777777766554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.18 E-value=8.9 Score=27.01 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 226 ETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 226 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
=+..+-++.+....+.|++....+.+++|.+.+++.-|.++|+.++.+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555555555566666666666666666666666666666666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=36 Score=33.46 Aligned_cols=49 Identities=4% Similarity=-0.193 Sum_probs=26.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010458 391 TWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLL 444 (510)
Q Consensus 391 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (510)
+..+...|....|...+...... .+......+.......|.++.+....
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-----~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-----KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34455667777777777666542 22333334444455566666655444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.14 E-value=28 Score=31.94 Aligned_cols=93 Identities=10% Similarity=-0.062 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc--CCCChhhH----
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKN-----RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF--AKMNDAEY---- 317 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~---- 317 (510)
-++..|...|++.+|.+++.++.+.-...| ...|..-++.|...+++.++...+....... +.+++...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777777777777777777665411112 2234455666777777777777776664431 22333221
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHH
Q 010458 318 TCVISSLV-KLGEFEKAENIYDEWE 341 (510)
Q Consensus 318 ~~l~~~~~-~~~~~~~a~~~~~~~~ 341 (510)
..-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11122344 5677777776665553
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.87 E-value=11 Score=35.23 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=68.9
Q ss_pred chHHHHHHHHHhCCCcCcHHHHHHHHHhC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHH--
Q 010458 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN-TSP--DVVTYNLWLAACASQNDKETAEKAFLELKK---TKIDPDWISY-- 247 (510)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~-- 247 (510)
.++..+...|.+.|++++|.+.|.++... ..+ -...+-..++.+...+++..+...+.+... .+..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36788999999999999999999999876 222 456777888899999999999999888642 3323332211
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 248 STLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 248 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
..-+..+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122234568888888887776554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.26 E-value=28 Score=30.68 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHH----HHHHHhCCCCCCcchHHHHHHH
Q 010458 109 DYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEAL----MEKMSECGFLKCPLPYNHMLNL 184 (510)
Q Consensus 109 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~l~~~ 184 (510)
.|..+..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34445555666677777776655422 224455665554443 4445556666666666666665
Q ss_pred HHhCCCcC-cHHHHHHHHHh----C-C--CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010458 185 YISNGQLD-KVPQMLQELKK----N-T--SPDVVTYNLWLAACASQNDKETAEKAF 232 (510)
Q Consensus 185 ~~~~g~~~-~a~~~~~~~~~----~-~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 232 (510)
+.....-+ .=.++++.+.+ . . .-++.....+...|.+.+++.+|...|
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 55433222 12233333322 1 1 126667777777777888887777766
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.89 E-value=7.9 Score=33.11 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 357 AAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
....+.|++++|+.....-++..+. |...-..++..+|-.|++++|.+-++...+......|....|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 3455778888888888887777543 67777788888888888888888888777542222333334444443
|
| >1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E | Back alignment and structure |
|---|
Probab=80.01 E-value=17 Score=28.75 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHhc-cChHHHHHHHHHHH
Q 010458 68 TVHKYELNRIVRELRKL-KRYKHALEVCEWME 98 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~ 98 (510)
..+...+..++..+... ........+|+.+-
T Consensus 35 ~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D 66 (183)
T 1s6c_A 35 VVNEETFKQIYAQFFPHGDASTYAHYLFNAFD 66 (183)
T ss_dssp EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhC
Confidence 34444444444444322 22334445555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 510 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 8e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 6/214 (2%)
Query: 127 ENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYI 186
+ + + + S L + + A EK Y ++ N+
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLK 214
Query: 187 SNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPD-WI 245
D+ + V + Q + A + + ++ P
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPD 272
Query: 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKM 305
+Y L + + +A + + L ++ G +E +R+++K
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRKA 331
Query: 306 MSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDE 339
+ +F + A ++ + S L + G+ ++A Y E
Sbjct: 332 LEVFPEFAAA-HSNLASVLQQQGKLQEALMHYKE 364
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 35/295 (11%), Positives = 82/295 (27%), Gaps = 18/295 (6%)
Query: 183 NLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242
+ G + + +L + + L + + + K +P
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA--IKQNP 64
Query: 243 DWI-SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRI 301
+YS L ++Y + ++A + + + +L + V
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 302 WKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYIN 361
+ + + E KA + + L +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNA 181
Query: 362 RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDH 421
+ ++ +A + + VT + P + Y+ G + K F +A+ + + +
Sbjct: 182 QGEIWLAIHHFEKAVT--LDPNFL------DAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 422 RLITAAYNKL----EEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGKMP 472
+ L EQG ID A + Y +L + G +
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 33/245 (13%), Positives = 57/245 (23%), Gaps = 3/245 (1%)
Query: 190 QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYST 249
L ++ Q+L S + A F + I PD
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS--QALAIRPDMPEVFN 75
Query: 250 LTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF 309
+Y+ AA + A+ + G
Sbjct: 76 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 135
Query: 310 AKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAE 369
++ KL E + E + +E I+ L
Sbjct: 136 PNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 194
Query: 370 SFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429
T + T L YL G ++ FK A+ + +HR +
Sbjct: 195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELS 254
Query: 430 KLEEQ 434
L +
Sbjct: 255 LLGQD 259
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.28 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.22 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.99 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.55 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.45 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.39 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.38 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.33 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.0 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.89 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.86 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.7 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.64 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.26 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.35 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.0 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.96 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.96 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.76 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.01 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.4 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.31 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.7e-25 Score=206.15 Aligned_cols=383 Identities=13% Similarity=0.057 Sum_probs=328.1
Q ss_pred HHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCC
Q 010458 77 IVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKK 155 (510)
Q Consensus 77 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 155 (510)
+...+.+.|++++|++.|+++.+.. |.++..+..++.++...|++++|+..++++.+..|+ +.+|..+...|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 4567788999999999999999875 778889999999999999999999999999888774 7889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 156 SAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLEL 235 (510)
Q Consensus 156 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 235 (510)
+++|...+....+... .+...+..........+....+............................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 9999999999988653 244455566666667777888887777776666666777777777888889999999888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChh
Q 010458 236 KKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDA 315 (510)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (510)
.... +.+...+..+...+...|++++|...+++..+..+. +...|..+...+...|++++|...+++....+. .+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHH
Confidence 6653 345778888999999999999999999999887554 677899999999999999999999999888643 3566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010458 316 EYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYL 395 (510)
Q Consensus 316 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 395 (510)
.+..+..++.+.|++++|...|++..+..+ .+..++..+...+...|++++|...++...... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 788888999999999999999999987653 356788899999999999999999999988864 347788899999999
Q ss_pred hcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 396 KKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 396 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
..|++++|++.|+++++. .+-+..++..+..+|.+.|++++|...|+++.+.+|.++..|..+..+|.+.|+
T Consensus 317 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999863 233577889999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.2e-22 Score=186.17 Aligned_cols=371 Identities=14% Similarity=0.087 Sum_probs=310.1
Q ss_pred CcHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHh
Q 010458 53 RSAAITMRKWKEEGHTVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFEN 132 (510)
Q Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 132 (510)
++|.+.++++.+.. |-++..+..+...+.+.|++++|+..|+.+.+.+ |.++..+..++.++...|++++|+..+..
T Consensus 16 ~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 92 (388)
T d1w3ba_ 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcccccccccccc
Confidence 88999999988765 5578889999999999999999999999999875 77888999999999999999999999999
Q ss_pred cccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhH
Q 010458 133 LPDKMRG-PDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVT 211 (510)
Q Consensus 133 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 211 (510)
.....+. ...+..........+....+............ ................+....+...+.......+.+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (388)
T d1w3ba_ 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhccCcchhHH
Confidence 8877553 44555555555566666666666655554432 345556666667777888888888888887777778889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTN 291 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (510)
+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...+++....+.. +...+..+...+..
T Consensus 172 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 249 (388)
T d1w3ba_ 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHH
Confidence 9999999999999999999999987754 346778899999999999999999999999987554 67788889999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 010458 292 MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESF 371 (510)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 371 (510)
.|++++|...|+++.+... -+..++..+..++...|++++|.+.++...... +.+...+..+...+...|++++|...
T Consensus 250 ~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 327 (388)
T d1w3ba_ 250 QGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHH
Confidence 9999999999999988532 245678889999999999999999999988654 45677888999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHcCC
Q 010458 372 YNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEEQGD 436 (510)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 436 (510)
|++..+..+. +..++..+...|.+.|++++|...|+++++. .| +...+..+..+|.+.||
T Consensus 328 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 328 YRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC
Confidence 9999987433 5678899999999999999999999999953 55 47789999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=9.1e-15 Score=132.77 Aligned_cols=270 Identities=11% Similarity=-0.042 Sum_probs=159.9
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCC-ChhhHHHHHHHHHhCC
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMR-GPDTCSALLHSYVQNK 154 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 154 (510)
.....+.+.|++++|+..|+.+.+.+ |.++..|..++.++...|++++|...|+++.+..| +...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 45666788999999999999998875 77888999999999999999999999999888766 4778888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 155 KSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLE 234 (510)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 234 (510)
++++|.+.++...... |+.............. .+.......+..+...+.+.++...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG------------------AGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhh------------------cccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 9999999999888754 3322110000000000 0000001111122233444555555555
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 010458 235 LKKTKI-DPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN 313 (510)
Q Consensus 235 m~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (510)
..+... ..+...+..+...+...|++++|...|++.....+. +...|..+..+|...|++++|.+.|++..+... -+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh-cc
Confidence 433221 223445555556666666666666666666555333 455566666666666666666666666555321 13
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc----------CCCCcchHHHHHHHHHhcCCHHHHH
Q 010458 314 DAEYTCVISSLVKLGEFEKAENIYDEWESIS----------GTGDPRVPNILLAAYINRNQLEMAE 369 (510)
Q Consensus 314 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~ 369 (510)
...+..+..+|.+.|++++|+..|++.++.. .......|..+-.++...|+.+.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3445556666666666666666666554311 0112223445555555556555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.3e-14 Score=128.23 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010458 182 LNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPE 261 (510)
Q Consensus 182 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 261 (510)
...+.+.|++++|+..|+++.+..+.+..+|..+..++...|++++|...|++..+.. +-+...|..++.+|...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence 3334444555555555555444444444455555555555555555555555544332 123444444555555555555
Q ss_pred HHHHHHHHHHH
Q 010458 262 KAATTLKEMEK 272 (510)
Q Consensus 262 ~A~~~~~~~~~ 272 (510)
+|.+.+++...
T Consensus 105 ~A~~~~~~~~~ 115 (323)
T d1fcha_ 105 QACEILRDWLR 115 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred ccccchhhHHH
Confidence 55555555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.8e-11 Score=105.34 Aligned_cols=146 Identities=8% Similarity=-0.005 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcC-hhhHHHHHHhcccCCCC-hhhHHHHHHHH
Q 010458 73 ELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRG-LSSAENFFENLPDKMRG-PDTCSALLHSY 150 (510)
Q Consensus 73 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 150 (510)
+++.+...+.+.+++++|++.++.+.+.+ |.+...|+....++...|+ +++|+..++.+.+..|+ ..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 34444444555555555555555555553 4444555555555554442 45555555555444442 44555555555
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACAS 221 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (510)
.+.|++++|+..++++.+.... +...|..+...+.+.|++++|++.++++.+..+.+..+|+.+..++.+
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence 5555555555555555544321 344555555555555555555555555555444455555544444333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.1e-10 Score=104.44 Aligned_cols=216 Identities=10% Similarity=0.044 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 010458 245 ISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMG-YKDEVLRIWKKMMSLFAKMNDAEYTCVISS 323 (510)
Q Consensus 245 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (510)
..++.+...+.+.+..++|++.++++.+.++. +...|+....++...| ++++|+..++........ +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 34555556666677777777777777776544 5566666666666654 467777777777664322 44566666667
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 010458 324 LVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQ---- 399 (510)
Q Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 399 (510)
+.+.|++++|+..++++.+..+ .+...|..+...+...|++++|...++++++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 7777777777777777776542 25666777777777777777777777777776433 55566666555555443
Q ss_pred --HHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHc
Q 010458 400 --MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV--STEIYNSLLRTYAKA 468 (510)
Q Consensus 400 --~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 468 (510)
+++|++.+.++++. .+.+...|..+...+.. ...+++.+.++...+..+. +...+..++..|...
T Consensus 200 ~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 56777777777753 23355666666555443 3456777777777665554 456666666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=2.4e-09 Score=97.37 Aligned_cols=128 Identities=10% Similarity=-0.017 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc------chHHHHHHHHHhCCCcCcHHHHHHHHHhC--CCC----Chh
Q 010458 143 CSALLHSYVQNKKSAEAEALMEKMSECGFLKCP------LPYNHMLNLYISNGQLDKVPQMLQELKKN--TSP----DVV 210 (510)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~ 210 (510)
.......+...|++++|++++++..+.. |+. .++..+..++...|++++|...|++..+. ..+ ...
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3334455666677777777777666543 221 23444555555666666666666655432 111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 211 TYNLWLAACASQNDKETAEKAFLELKK----TKIDPD---WISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 211 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
++..+...+...|++..+...+.+... .+.... ...+..+...+...|+++.+...+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 161 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 334444445555555555555544321 111110 11233344444555555555555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3e-09 Score=96.78 Aligned_cols=166 Identities=10% Similarity=-0.014 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC------hhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CC----c
Q 010458 107 SGDYAVHLDLISKIRGLSSAENFFENLPDKMRG------PDTCSALLHSYVQNKKSAEAEALMEKMSECGFL-KC----P 175 (510)
Q Consensus 107 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~ 175 (510)
+.........+...|++++|++++++..+..|+ ..++..+...+...|++++|...|++..+.... ++ .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 344444566667778888888887776665443 235566677777788888888887776542211 11 1
Q ss_pred chHHHHHHHHHhCCCcCcHHHHHHHHHhC----CCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 010458 176 LPYNHMLNLYISNGQLDKVPQMLQELKKN----TSP----DVVTYNLWLAACASQNDKETAEKAFLELKKT----KIDPD 243 (510)
Q Consensus 176 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~ 243 (510)
.++..+...+...|++..+...+...... ..+ ....+..+...+...|+++.+...+...... +....
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 23455556677777888887777765432 111 1234555666777778888887777775432 12222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010458 244 WISYSTLTSLYIKMELPEKAATTLKEMEK 272 (510)
Q Consensus 244 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 272 (510)
...+..+...+...++...+...+.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 200 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLEN 200 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445555566666777766666665544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=9.5e-10 Score=98.07 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 295 KDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNR 374 (510)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 374 (510)
.++|..+|++..+...+.+...+...+......|+++.|..+|+.+.+..+.....+|...+....+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555556555543222233344555555556666666666666665433222223455555666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 010458 375 LVTKGIKPCYTTWELLTWG-YLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHV 453 (510)
Q Consensus 375 ~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 453 (510)
+.+.++. +...|...... +...|+.+.|..+|+.++. ..+.+...|...+..+.+.|+++.|+.+|++..+..+.
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~---~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 6554332 22333322222 2234566666666666664 23334555666666666666666666666666554432
Q ss_pred C----HHHHHHHHHHHHHcCC--ChHHHHHHHHh
Q 010458 454 S----TEIYNSLLRTYAKAGK--MPLIIVERMQK 481 (510)
Q Consensus 454 ~----~~~~~~l~~~~~~~g~--~a~~~~~~m~~ 481 (510)
+ ...|...+.--...|+ .+..+++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2356666655555666 45555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.2e-09 Score=97.35 Aligned_cols=189 Identities=11% Similarity=0.011 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010458 261 EKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEW 340 (510)
Q Consensus 261 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 340 (510)
++|..+|+...+..++.+...|...+..+...|+++.|..+|+.+...........|...+..+.+.|+.+.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555555432222344445555555555555555555555554322222234555555555555666666666655
Q ss_pred HhccCCCCcchHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC
Q 010458 341 ESISGTGDPRVPNILLAA-YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP 419 (510)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p 419 (510)
.+.++. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++++... +..|
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-~~~~ 237 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPP 237 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh
Confidence 543322 22233222222 223456666666666666542 2245566666666666666666666666666531 1222
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010458 420 D--HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 420 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 452 (510)
+ ...|...+..-...|+.+.+..+++++.+.-+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2 34566666666666777777776666655443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.4e-09 Score=94.32 Aligned_cols=200 Identities=13% Similarity=-0.002 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV 325 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (510)
+|..+..+|.+.|++++|...|++..+..+. +..+|..+..+|...|++++|+..|+++.+..+. +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 4455566666666666666666666665443 5566666666666666666666666666664221 3345556666666
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH----
Q 010458 326 KLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQME---- 401 (510)
Q Consensus 326 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~---- 401 (510)
..|++++|.+.|+...+..+ .+......+..++.+.+..+.+..+......... +...+. ++..+.......
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--hhhhhh-HHHHHHHHHHHHHHHH
Confidence 66666666666666665432 2333333333344444444444444444443321 111121 122222211111
Q ss_pred HHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Q 010458 402 KVLECFKKAIGSVRKWVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVST 455 (510)
Q Consensus 402 ~a~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 455 (510)
.+...+..... ..|+ ..++..+...+...|++++|...|++....+|.+.
T Consensus 193 ~~~~~~~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 193 RLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHCCSHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHhhh----cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 11111111111 1122 23566677778888888888888888887777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=3.6e-11 Score=109.03 Aligned_cols=263 Identities=7% Similarity=-0.050 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCC----------CcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 154 KKSAEAEALMEKMSECGFLKCPL-PYNHMLNLYISNG----------QLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
+..++|+++++...+.. |+.. .|+..-..+...+ ++++|+.+++...+..+.+...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 33467777777776654 4433 3433332222211 134455555555444444444554444444443
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010458 223 N--DKETAEKAFLELKKTKIDPDWISYS-TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVL 299 (510)
Q Consensus 223 ~--~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 299 (510)
+ +++++...++++.+.. +++...+. .....+...+.+++|+..++.+.+.++. +...|+.+..++...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHH
Confidence 3 2455555555544432 12233322 2233444445555555555555544333 4444555555555555554444
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 300 RIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKG 379 (510)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 379 (510)
..++...... |. .. .+...+...+..+++...+.......
T Consensus 199 ~~~~~~~~~~--~~---~~-----------------------------------~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 199 PQGRLPENVL--LK---EL-----------------------------------ELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp SCCSSCHHHH--HH---HH-----------------------------------HHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHhHHhH--HH---HH-----------------------------------HHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 3333322210 00 01 11122223333444444444444432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 380 IKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
. ++...+..+...+...+++++|...+.+.... .+.+..++..+..++...|++++|.+.++++.+.+|.....|+
T Consensus 239 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 239 A-EPLFRCELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp C-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred c-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 1 12233334444444445555555555555431 1122334445555555555555555555555555554444455
Q ss_pred HHHHH
Q 010458 460 SLLRT 464 (510)
Q Consensus 460 ~l~~~ 464 (510)
.|...
T Consensus 315 ~L~~~ 319 (334)
T d1dcea1 315 DLRSK 319 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.6e-10 Score=100.40 Aligned_cols=217 Identities=12% Similarity=0.005 Sum_probs=117.2
Q ss_pred ChHHHHHHHHHHHHccCcc--cChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCCCHHHHHHH
Q 010458 86 RYKHALEVCEWMELQYDIK--LVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNKKSAEAEAL 162 (510)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 162 (510)
+.+.++..++++....... .....+..++.++.+.|++++|++.|++..+..|+ +.+|+.+..++.+.|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555555432111 12235556667777777777777777777766653 66777777777777777777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010458 163 MEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDP 242 (510)
Q Consensus 163 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 242 (510)
|++..+.... +..+|..+..++...|++++|.+.|+...+..+.+......+..++.+.+..+....+..........+
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 7777765422 455666777777777777777777777766655555544444444455555554444444443332111
Q ss_pred CHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 243 DWISYSTLTSLYIKMEL----PEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 243 ~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
..++ ++..+..... .+.+...+......... ...+|..+...|...|++++|...|++...
T Consensus 173 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 173 --WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp --THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1121 1222211111 11111111111111000 123455566666667777777777776665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=6.9e-11 Score=107.11 Aligned_cols=251 Identities=7% Similarity=-0.070 Sum_probs=161.2
Q ss_pred HhcChhhHHHHHHhcccCCCC-hhhHHHHHHH---HHhC-------CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 010458 119 KIRGLSSAENFFENLPDKMRG-PDTCSALLHS---YVQN-------KKSAEAEALMEKMSECGFLKCPLPYNHMLNLYIS 187 (510)
Q Consensus 119 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~---~~~~-------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 187 (510)
..+..++|+++++++.+..|+ ...|+..-.. +... |++++|+..++...+... .+...|..+..++..
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSR 119 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHH
Confidence 334458999999999988776 4566554443 3333 337889999999888652 266678888888777
Q ss_pred CCC--cCcHHHHHHHHHhCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010458 188 NGQ--LDKVPQMLQELKKNTSPDVVTYNL-WLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264 (510)
Q Consensus 188 ~g~--~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 264 (510)
.++ +++|...+++.....+++...+.. ....+...+.++.|...++.+.+.. +-+...|+.+...+.+.|++++|.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 665 679999999998887777777654 4567778899999999999988875 357888999999999999999887
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
..++...+.. |+. ......+...+..+++...+....... +++...+..+...+...++.++|...+.+..+..
T Consensus 199 ~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENVL--LKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHHH--HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHhH--HHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7776555431 111 112233344455555555555554432 1223334444444455555555555555554332
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010458 345 GTGDPRVPNILLAAYINRNQLEMAESFYNRLVTK 378 (510)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 378 (510)
+ .+...+..+..++...|+.++|...++++.+.
T Consensus 273 p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 273 K-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp H-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 13344444555555555555555555555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.99 E-value=2.3e-08 Score=88.00 Aligned_cols=198 Identities=8% Similarity=0.057 Sum_probs=94.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcc----C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-----hhhHHHH
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRT----C-RKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMN-----DAEYTCV 320 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l 320 (510)
...|...|++++|.+.|.+..+.. - ..-..+|..+..+|.+.|++++|...+++........+ ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 344556666666666666554421 0 01123556666666666666666666665544211111 1223444
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHhccCC----C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHH
Q 010458 321 ISSLV-KLGEFEKAENIYDEWESISGT----G-DPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCY------TTWE 388 (510)
Q Consensus 321 ~~~~~-~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~ 388 (510)
...|. ..|++++|...+++..+.... + ...++..+...+...|++++|...|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 44443 346666666666655431100 0 1223555666666677777777777666653221110 1223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 010458 389 LLTWGYLKKGQMEKVLECFKKAIGSVRKWVP--DHRLITAAYNKLEE--QGDIDGAEHLLVTLR 448 (510)
Q Consensus 389 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 448 (510)
..+..+...|+++.|...++++.+..+.+.. .......++.++.. .+.+++|...|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3444555566777777777766643111100 11233444444433 233556655555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.4e-07 Score=69.86 Aligned_cols=106 Identities=12% Similarity=0.008 Sum_probs=83.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHc
Q 010458 355 LLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQ 434 (510)
Q Consensus 355 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 434 (510)
-...+...|++++|+..|++.++..+. +...|..+..+|...|++++|+..+.++++. .+.+...|..+..++...
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHh---ccchhhHHHHHHHHHHHc
Confidence 456677888888888888888876543 6677888888888888888888888888863 345677888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 435 GDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
|++++|...|++..+..|.++..+..+-..
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888888877777666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=6.1e-07 Score=78.58 Aligned_cols=200 Identities=9% Similarity=-0.028 Sum_probs=135.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-----Chhh
Q 010458 212 YNLWLAACASQNDKETAEKAFLELKKT----KIDP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRK-----NRVA 281 (510)
Q Consensus 212 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~ 281 (510)
|......|...+++++|.+.|.+..+. +-.+ ...+|..+..+|.+.|++++|.+.+++..+..... ...+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 333466788888899999888886432 2112 23568888999999999999999998876542111 1345
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhc----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc-----
Q 010458 282 YSSLLSLYTN-MGYKDEVLRIWKKMMSLF----AKM-NDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR----- 350 (510)
Q Consensus 282 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 350 (510)
+..+...|.. .|++++|+..+++..... ..+ ...++..+...+...|++++|...|+++..........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6666777744 699999999998876531 111 12457778889999999999999999988654332221
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHh
Q 010458 351 -VPNILLAAYINRNQLEMAESFYNRLVTKGIK-PC---YTTWELLTWGYLK--KGQMEKVLECFKKAI 411 (510)
Q Consensus 351 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 411 (510)
.+...+..+...|+++.|...+++..+..+. ++ ......++.++.. .+.+++|+..|+++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2334555677889999999999998875322 11 2244566666655 345788888887655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=4.7e-07 Score=73.60 Aligned_cols=124 Identities=19% Similarity=0.107 Sum_probs=83.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCH
Q 010458 216 LAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYK 295 (510)
Q Consensus 216 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (510)
...+...|+++.|++.|.++ .+|+..+|..+..+|...|++++|++.|++..+.++. +...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 44556778888888777654 2456677777888888888888888888888777655 667777788888888888
Q ss_pred HHHHHHHHHHHHhcCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 010458 296 DEVLRIWKKMMSLFAKMN---------------DAEYTCVISSLVKLGEFEKAENIYDEWESIS 344 (510)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 344 (510)
++|+..|++......... ..++..+..++.+.|++++|.+.+....+..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888777765311100 1233445556666677777777666666443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.9e-07 Score=74.89 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=56.7
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010458 151 VQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEK 230 (510)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 230 (510)
...|+++.|++.|+++. +|++.+|..+..+|...|++++|++.|++..+..+.+...|..+..++.+.|++++|.+
T Consensus 16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 33444444444443321 13333444444444444444444444444444434444444444444444444444444
Q ss_pred HHHHHHhCC------------C--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHccC
Q 010458 231 AFLELKKTK------------I--DP-DWISYSTLTSLYIKMELPEKAATTLKEMEKRTC 275 (510)
Q Consensus 231 ~~~~m~~~~------------~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 275 (510)
.|++..... . .. ...++..+..++.+.|++++|.+.++...+..+
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 444432210 0 00 123344556666777777777777766665533
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=8e-07 Score=69.85 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=70.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC
Q 010458 356 LAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG 435 (510)
Q Consensus 356 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 435 (510)
...|.+.|++++|...|++.++.++. +...|..+..+|...|++++|+..|+++++. .+-+..+|..++.++...|
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHHHHcC
Confidence 44566777777777777777766433 5666777777777777777777777777753 2334566777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 436 DIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 436 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
++++|...+++.....|.++..+..+..+
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 77777777777777766666665555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=6.7e-07 Score=66.02 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=41.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHH
Q 010458 217 AACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKD 296 (510)
Q Consensus 217 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (510)
..+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.++. +...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHH
Confidence 33444444444444444444332 223444444444444444444444444444444332 4444444444444444444
Q ss_pred HHHHHHHHHHH
Q 010458 297 EVLRIWKKMMS 307 (510)
Q Consensus 297 ~a~~~~~~~~~ 307 (510)
+|+..|++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.58 E-value=4.6e-05 Score=65.17 Aligned_cols=224 Identities=14% Similarity=0.058 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHH----hcChhhHHHHHHhcccCCCChhhHHH
Q 010458 70 HKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISK----IRGLSSAENFFENLPDKMRGPDTCSA 145 (510)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 145 (510)
|+..+..|...+...+++++|++.|++..+.+ +...+..+..++.. ..+...|...++.....+ ++.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccchhhc
Confidence 45667777777778888888888888887765 55666667777665 457777888777766553 3444444
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC----CcCcHHHHHHHHHhCCCCChhHHHHHHH
Q 010458 146 LLHSYVQ----NKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNG----QLDKVPQMLQELKKNTSPDVVTYNLWLA 217 (510)
Q Consensus 146 l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 217 (510)
+...+.. ..+.+.|...++...+.|. ......+...+.... ....+...+.... ...+...+..+..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~L~~ 150 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC--DLNDGDGCTILGS 150 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhh--cccccchhhhhhh
Confidence 4444432 4677888888887777652 223333333333322 2223333333322 2345556666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHHHHHHHH
Q 010458 218 ACAS----QNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSSLLSLY 289 (510)
Q Consensus 218 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (510)
.+.. ..+...+...++...+.| +......+...|.. ..++++|...|++..+.| ++..+..|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 6654 345666666666665544 34455555555554 456777777777766654 344555566655
Q ss_pred Hh----cCCHHHHHHHHHHHHHhc
Q 010458 290 TN----MGYKDEVLRIWKKMMSLF 309 (510)
Q Consensus 290 ~~----~~~~~~a~~~~~~~~~~~ 309 (510)
.. ..+.++|.++|++....|
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCccCHHHHHHHHHHHHHCc
Confidence 54 335666777777666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=5.1e-07 Score=74.23 Aligned_cols=100 Identities=14% Similarity=-0.025 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHH
Q 010458 68 TVHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSAL 146 (510)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 146 (510)
.|+...+......+.+.|++++|+..|+.+.+.. |.++..|..++.+|.+.|++++|+..|+.+.+..|+ +.+|..+
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 3667777777888889999999999999888875 778888888899999999999999999998888774 7788888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC
Q 010458 147 LHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
..+|...|++++|+..|+...+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 88999999999999888887653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=2.1e-07 Score=76.67 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=72.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010458 312 MNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLT 391 (510)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 391 (510)
|+...+......+.+.|++++|+..|++.++.. +.++..|..+..+|.+.|++++|+..|++.++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 455566667777778888888888887777654 335667777777888888888888888887765432 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 010458 392 WGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 392 ~~~~~~~~~~~a~~~~~~~~~ 412 (510)
.+|...|++++|+..|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888877765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.3e-06 Score=68.63 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=36.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHH
Q 010458 218 ACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDE 297 (510)
Q Consensus 218 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (510)
.|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+..+. +..+|..++.++...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444443332 223334444444444444444444444444443222 33344444444444444444
Q ss_pred HHHHHHHHHH
Q 010458 298 VLRIWKKMMS 307 (510)
Q Consensus 298 a~~~~~~~~~ 307 (510)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=0.00023 Score=60.63 Aligned_cols=224 Identities=15% Similarity=0.017 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCChhhHHH
Q 010458 209 VVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIK----MELPEKAATTLKEMEKRTCRKNRVAYSS 284 (510)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 284 (510)
+..+..+...+.+.+|+++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455555666666677777777777766654 34445455555554 456666666666665543 2233333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHhccCCCCcchHHHHH
Q 010458 285 LLSLYTN----MGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLV----KLGEFEKAENIYDEWESISGTGDPRVPNILL 356 (510)
Q Consensus 285 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (510)
+...+.. ..+.+.|...++.....|.. .....+...+. .......+...+..... ..+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhh
Confidence 3333332 34556666666666554321 11222222222 12344455555554443 22444555555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 357 AAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 357 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
..|.. ..+...+..+++...+.| +......+...|.. ..++++|+.+|.++.+. + ++..+..|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g---~~~a~~~LG 221 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E---NGGGCFNLG 221 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc--c---CHHHHHHHH
Confidence 55554 234556666666665543 44444444444443 45666677777666654 3 344555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCC
Q 010458 429 NKLEE----QGDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 429 ~~~~~----~g~~~~A~~~~~~~~~~~~ 452 (510)
..|.+ ..+.++|.++|++..+.|.
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 55543 2356666666666665553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.7e-06 Score=63.99 Aligned_cols=105 Identities=9% Similarity=0.011 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhccCCCCCC-HHHHHHHH
Q 010458 353 NILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQM---EKVLECFKKAIGSVRKWVPD-HRLITAAY 428 (510)
Q Consensus 353 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~-~~~~~~l~ 428 (510)
..++..+...+++++|.+.|++.+..++. +..++..+..++.+.++. ++|+.+|++++.. .-.|+ ..++..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc--cCCchHHHHHHHHH
Confidence 35667777888888888888888886543 667777888888765544 4688888888754 22222 23677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHH
Q 010458 429 NKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNS 460 (510)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 460 (510)
.+|.+.|++++|.+.|+++.+.+|.+......
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 88888888888888888888888877655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=0.00041 Score=60.48 Aligned_cols=135 Identities=10% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHH
Q 010458 69 VHKYELNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLH 148 (510)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 148 (510)
||..-...+.+.|.+.|.++.|..+|..+. .|..++..+.+.++++.|.+++.+.. ++.+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~----~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC----CHHHHHHHHH
Confidence 344444455555666666666666665432 23455556666666666666655432 4556666666
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQ 222 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 222 (510)
.+.+......+. +.......++.....++..|-..|.+++...+++.......++...++.++..|++.
T Consensus 78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 666555554331 112222234444455666666666666666666655444444555566666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=4.4e-06 Score=66.16 Aligned_cols=130 Identities=12% Similarity=-0.019 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010458 317 YTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK 396 (510)
Q Consensus 317 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (510)
+......+.+.|++++|+..|.+.++......... . .-......+ ...+|+.+..+|.+
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~-~-------------~~~~~~~~~-------~~~~~~nla~~y~k 74 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS-N-------------EEAQKAQAL-------RLASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC-S-------------HHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc-h-------------HHHhhhchh-------HHHHHHHHHHHHHh
Confidence 44555667777888888887777765321111100 0 000000010 12356677888889
Q ss_pred cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 010458 397 KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK 470 (510)
Q Consensus 397 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 470 (510)
.|++++|+..+++++.. -+.++.++..+..+|...|++++|...|+++.+.+|.++.+...+.....+.+.
T Consensus 75 ~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 75 LQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhc---cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998864 233778888888999999999999999999999888888777777666555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.38 E-value=2.1e-06 Score=62.61 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 010458 354 ILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE 433 (510)
Q Consensus 354 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 433 (510)
.+...+.+.|++++|...|++.++.++. +...|..+..++.+.|++++|+..|+++++. .+.+..++..+..+|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHH
Confidence 3455666677777777777777665433 5666677777777777777777777777652 23346666777777777
Q ss_pred cCCHHHHHHHHHHH
Q 010458 434 QGDIDGAEHLLVTL 447 (510)
Q Consensus 434 ~g~~~~A~~~~~~~ 447 (510)
.|++++|.+.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 77777777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.38 E-value=9.5e-07 Score=64.55 Aligned_cols=89 Identities=11% Similarity=-0.141 Sum_probs=64.8
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC-hhhHHHHHHHHHhCC
Q 010458 76 RIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG-PDTCSALLHSYVQNK 154 (510)
Q Consensus 76 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 154 (510)
.+...+.+.|++++|+..|++..+.. |.++..|..++.++.+.|++++|+..|++..+..|+ ..+|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 34555667777777777777777764 566777777777777777777777777777776663 677777777777777
Q ss_pred CHHHHHHHHHHH
Q 010458 155 KSAEAEALMEKM 166 (510)
Q Consensus 155 ~~~~A~~~~~~~ 166 (510)
++++|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.34 E-value=0.00066 Score=59.14 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=91.3
Q ss_pred ChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 010458 106 VSGDYAVHLDLISKIRGLSSAENFFENLPDKMRGPDTCSALLHSYVQNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLY 185 (510)
Q Consensus 106 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 185 (510)
+......+++.|.+.|.++.|..++..+ .-|..++..+.+.++++.|.+++.+. -+..+|..+...+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~-------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp ----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhC-------CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 4445556777777888888888888754 34667777778888888877766543 2555777777777
Q ss_pred HhCCCcCcHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010458 186 ISNGQLDKVPQMLQELKKN-TSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAA 264 (510)
Q Consensus 186 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 264 (510)
.+.....-+ .+... ...+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k-- 150 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK-- 150 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH--
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH--
Confidence 766543222 11111 2234455566777777778888887777766433 2455666777777777653 222
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010458 265 TTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKK 304 (510)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (510)
+.+.+.... +..-...++..|.+.+-+.++.-++.+
T Consensus 151 -l~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 151 -MREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDK 186 (336)
T ss_dssp -HHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -HHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHh
Confidence 333333321 122233445555555555555444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.6e-06 Score=62.96 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=78.5
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc---ChhhHHHHHHhcccCCCCh---hhHHHHHH
Q 010458 75 NRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR---GLSSAENFFENLPDKMRGP---DTCSALLH 148 (510)
Q Consensus 75 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~---~~~~~l~~ 148 (510)
..+++.+...+++++|.+.|+.....+ |.++.++..+..++.+.+ ++++|+.+++++...+|++ .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 457778888899999999999998876 778888888888887644 5557999999988776543 46778888
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCcc
Q 010458 149 SYVQNKKSAEAEALMEKMSECGFLKCPL 176 (510)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 176 (510)
+|.+.|++++|++.|+++.+.. |+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~--P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE--PQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhC--cCCH
Confidence 8999999999999999998865 5544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=5.9e-07 Score=85.10 Aligned_cols=96 Identities=10% Similarity=-0.030 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHH
Q 010458 208 DVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLS 287 (510)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 287 (510)
+...+..+...+.+.|+.+.|...+....... | ..++..+...+...|++++|...|++..+..+. +...|+.+..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHH
Confidence 33344444444444444444444443332210 0 123334444444455555555555554444322 3344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 010458 288 LYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~ 307 (510)
.+...|+..+|...|.+...
T Consensus 195 ~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555544444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.24 E-value=3.4e-05 Score=59.60 Aligned_cols=78 Identities=14% Similarity=-0.027 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
.+|..+..+|.+.|++++|++.++++++. .+.+..+|..+..++...|++++|...|++..+.+|.+..+.+.+-.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~---~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc---cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46777888999999999999999999863 345778999999999999999999999999999998888777666544
Q ss_pred H
Q 010458 465 Y 465 (510)
Q Consensus 465 ~ 465 (510)
.
T Consensus 145 ~ 145 (153)
T d2fbna1 145 V 145 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=6.6e-05 Score=59.10 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 010458 279 RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAA 358 (510)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (510)
...+......+.+.|++++|+..|.+.+.......... ..-......+. ..+|+.+..+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~~~-------~~~~~nla~~ 71 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQALR-------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhchhH-------HHHHHHHHHH
Confidence 34566677889999999999999999887522111100 00011111111 1256678888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHH
Q 010458 359 YINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVP-DHRLITAAYNKLEE 433 (510)
Q Consensus 359 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 433 (510)
|.+.|++++|+..++..++.++. +...|..+..+|...|++++|+..|+++++. .| +..+...+..+..+
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l----~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL----YPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH
Confidence 89999999999999999887543 7788888999999999999999999999864 45 44454444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.13 E-value=4.3e-05 Score=60.09 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 385 TTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
..|..+..+|.+.|++++|+..++++++. .+.+...|..+..++...|++++|...|+++.+.+|.++.++..+-..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhc---ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34666778888899999999999998863 355678888888899999999999999999999888888777776666
Q ss_pred HHHcCC
Q 010458 465 YAKAGK 470 (510)
Q Consensus 465 ~~~~g~ 470 (510)
..+.+.
T Consensus 142 ~~~~~~ 147 (168)
T d1kt1a1 142 QKKAKE 147 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.4e-06 Score=82.43 Aligned_cols=228 Identities=14% Similarity=0.020 Sum_probs=125.7
Q ss_pred cHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010458 193 KVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTKIDPDW-ISYSTLTSLYIKMELPEKAATTLKEME 271 (510)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 271 (510)
+|.+.|++..+..+....++..+..++...+++++| |+++... .|+. ..++.. ...-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE--QDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH--HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH--HHHHHHHHHHHHHHHHHhc
Confidence 577788877665444556667777888888888766 6665543 2221 111111 1111112455666777766
Q ss_pred HccCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCc
Q 010458 272 KRTCRKNRVAYSSLLSLY--TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDP 349 (510)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 349 (510)
+....++..-.......+ ...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+....+..+ .
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---Q 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH---H
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---H
Confidence 554444433332222222 22344555555544443321 22345567777788888899888888777664321 2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 010458 350 RVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYN 429 (510)
Q Consensus 350 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~ 429 (510)
.++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|+..|.+++. -.+|-..++..|..
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~---~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIA---VKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS---SSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHH
Confidence 46777888899999999999999999987533 567899999999999999999999999986 34677788888887
Q ss_pred HHHHcC
Q 010458 430 KLEEQG 435 (510)
Q Consensus 430 ~~~~~g 435 (510)
.+.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 776554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.4e-05 Score=59.63 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhcChhhHHHHHHhcccCCCC--------hhhHHH
Q 010458 74 LNRIVRELRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIRGLSSAENFFENLPDKMRG--------PDTCSA 145 (510)
Q Consensus 74 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~ 145 (510)
+..+...+.+.|++++|+..|+...+.+ |.++..+..+..++...|++++|++.++.+.+..|+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4456677888899999999999988875 677888888899999999999999998887765432 245666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 010458 146 LLHSYVQNKKSAEAEALMEKMSEC 169 (510)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~ 169 (510)
+...+...+++++|++.|+.....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 777778888888888888877654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=2e-05 Score=58.76 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=32.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 249 TLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 249 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
.+...+.+.|++++|+..|++..+.++. +...+..+..+|.+.|++++|+..+++++.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 4455555555555555555555555433 455555555555555555555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=7e-05 Score=59.30 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHHH-----hCCCCCCHHHHHH
Q 010458 421 HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERMQ-----KDNVQMDAETQKV 493 (510)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m~-----~~~~~pd~~t~~~ 493 (510)
...+..+..++.+.|++++|...++++.+.+|.+...|..++.+|.+.|+ +|++.|+++. +.|+.|+..|-..
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 35677788899999999999999999999999999999999999999999 8999998874 4699999877444
Q ss_pred HH
Q 010458 494 LK 495 (510)
Q Consensus 494 l~ 495 (510)
.-
T Consensus 147 ~~ 148 (179)
T d2ff4a2 147 NE 148 (179)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=0.00012 Score=56.34 Aligned_cols=61 Identities=21% Similarity=0.068 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 246 SYSTLTSLYIKMELPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 246 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
+|+.+..+|.+.|++++|++.+++..+..+. +..+|..+..++...|++++|+..|++..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555666666666666666666655433 555666666666666666666666666555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=6.6e-05 Score=59.07 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLR 463 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 463 (510)
...|..+..++.+.|++++|+..+.++++. -+.+...|..+..++...|++++|...|+++.+..|.+..++..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~ 153 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhh---hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 446677788888999999999999999863 34467788889999999999999999999999988888877777666
Q ss_pred HHHH
Q 010458 464 TYAK 467 (510)
Q Consensus 464 ~~~~ 467 (510)
+..+
T Consensus 154 ~~~~ 157 (169)
T d1ihga1 154 VKQK 157 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.89 E-value=0.00047 Score=53.87 Aligned_cols=81 Identities=9% Similarity=-0.047 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 010458 351 VPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNK 430 (510)
Q Consensus 351 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~ 430 (510)
+|+.+..+|.+.|++++|+..+++.++.++ .+...|..+..++...|++++|...|.+++.. .+.+..+...+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l---~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 456677888899999999999999888654 37778888889999999999999999998853 23344444444444
Q ss_pred HHHcC
Q 010458 431 LEEQG 435 (510)
Q Consensus 431 ~~~~g 435 (510)
..+.+
T Consensus 142 ~~~~~ 146 (168)
T d1kt1a1 142 QKKAK 146 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=0.00012 Score=57.46 Aligned_cols=80 Identities=10% Similarity=-0.064 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010458 349 PRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAY 428 (510)
Q Consensus 349 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~ 428 (510)
...+..+..++.+.|++++|+..++++++..+. +...|..+..++...|++++|+..|+++++. .+.+..+...+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l---~p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 445677788899999999999999999987643 7778899999999999999999999999864 223445555554
Q ss_pred HHHH
Q 010458 429 NKLE 432 (510)
Q Consensus 429 ~~~~ 432 (510)
.+..
T Consensus 153 ~~~~ 156 (169)
T d1ihga1 153 KVKQ 156 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.70 E-value=0.00027 Score=55.80 Aligned_cols=71 Identities=7% Similarity=-0.041 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----ccCCCChhh
Q 010458 210 VTYNLWLAACASQNDKETAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEK-----RTCRKNRVA 281 (510)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 281 (510)
..+..+..++...|++++|...++++.+.. +-+...|..++.++.+.|+.++|++.|+++.+ .|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 445555666666666666666666665543 34555666666666666666666666665533 366665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=9.6e-05 Score=56.28 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=51.0
Q ss_pred HHhccChHHHHHHHHHHHHccCcccChhhHHHHHHHHHHhc----------ChhhHHHHHHhcccCCCC-hhhHHHHHHH
Q 010458 81 LRKLKRYKHALEVCEWMELQYDIKLVSGDYAVHLDLISKIR----------GLSSAENFFENLPDKMRG-PDTCSALLHS 149 (510)
Q Consensus 81 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~-~~~~~~l~~~ 149 (510)
|-+.+.+++|+..|+...+.. |.++..+..+..++...+ .+++|+..|+++.+..|+ +.+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence 456677889999999988876 788888888888877544 345677777776666553 5666666666
Q ss_pred HHhCC
Q 010458 150 YVQNK 154 (510)
Q Consensus 150 ~~~~~ 154 (510)
|...|
T Consensus 85 y~~~g 89 (145)
T d1zu2a1 85 YTSFA 89 (145)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 65443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.65 E-value=0.00024 Score=53.96 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhCCCCCHHHHHHH
Q 010458 400 MEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQG-----------DIDGAEHLLVTLRNAGHVSTEIYNSL 461 (510)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l 461 (510)
+++|+..|+++++. -+.+..+|..+..+|...| .+++|.+.|++..+..|.+...+..|
T Consensus 57 ~~~Ai~~~~kAl~l---~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L 126 (145)
T d1zu2a1 57 IQEAITKFEEALLI---DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 126 (145)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHH
Confidence 34455555555532 1223445555555544433 24566666666666666554444333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00032 Score=48.70 Aligned_cols=80 Identities=14% Similarity=-0.002 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Q 010458 384 YTTWELLTWGYLKKGQMEKVLECFKKAIGSVRK---WVPD-HRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYN 459 (510)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 459 (510)
...+-.+...+.+.|++++|+..|+++++.... ..++ ..++..+..++.+.|++++|...++++.+.+|.++.+++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344456777888888999998888888764211 1122 567888999999999999999999999999988888877
Q ss_pred HHHH
Q 010458 460 SLLR 463 (510)
Q Consensus 460 ~l~~ 463 (510)
.+..
T Consensus 85 Nl~~ 88 (95)
T d1tjca_ 85 NLKY 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.62 E-value=2.3e-05 Score=66.46 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=76.5
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010458 325 VKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVL 404 (510)
Q Consensus 325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 404 (510)
.+.|++++|+..+++.++.. +.+...+..+...|+..|++++|...++...+..+. +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 45688888888888888765 336777888888888888888888888888876322 2334444443333333332222
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 010458 405 ECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVS 454 (510)
Q Consensus 405 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (510)
.-....... +-+++...+......+...|+.++|.+.++++.+..+..
T Consensus 85 ~~~~~~~~~--~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 85 QGAATAKVL--GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp TSCCCEECC--CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHhhhhhcc--cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 211111100 111222334445566778899999999998888776653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.61 E-value=4.4e-05 Score=64.71 Aligned_cols=121 Identities=9% Similarity=0.011 Sum_probs=58.6
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010458 152 QNKKSAEAEALMEKMSECGFLKCPLPYNHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKA 231 (510)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 231 (510)
+.|++++|+..+++..+... -|...+..+...++..|++++|.+.|+...+..+.+...+..+...+...+..+++..-
T Consensus 8 ~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence 44566666666666555442 14455555666666666666666666655554333444444444443333322222211
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 232 FLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 232 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111222333334455566667777777777766665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.26 E-value=0.0016 Score=49.99 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=47.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCC-CC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCh
Q 010458 251 TSLYIKMELPEKAATTLKEMEKRTCR-KN----------RVAYSSLLSLYTNMGYKDEVLRIWKKMMSLF-----AKMND 314 (510)
Q Consensus 251 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 314 (510)
...+.+.|++++|+..|++..+.... |+ ...|+.+..+|...|++++|...+++..... ..++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777766654211 11 2345666666666666666666666654421 01110
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010458 315 -----AEYTCVISSLVKLGEFEKAENIYDEWE 341 (510)
Q Consensus 315 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 341 (510)
..+..+..+|...|++++|...|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 123344455555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.19 E-value=0.0018 Score=49.65 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 352 PNILLAAYINRNQLEMAESFYNRLVTK-----GIKPC-----YTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 352 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
|+.+..+|...|++++|...+++.++. ...++ ...+..+..+|...|++++|+..|+++++
T Consensus 58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555544321 01111 11344455666666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0026 Score=43.86 Aligned_cols=60 Identities=12% Similarity=-0.092 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 214 LWLAACASQNDKETAEKAFLELKKTK-----IDPD-WISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 214 ~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
.+...+.+.|++++|...|++..+.. ..++ ..+++.+..++.+.|++++|+..++++.+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 44445555555555555555432210 0111 234445555555555555555555555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.23 Score=44.97 Aligned_cols=115 Identities=9% Similarity=-0.017 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCChhhHHHHH----HHHHhcCCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHH
Q 010458 293 GYKDEVLRIWKKMMSLFAKMNDAEYTCVI----SSLVKLGEFEKAENIYDEWESISGTGDPRVPNILLAAYINRNQLEMA 368 (510)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 368 (510)
.+.+.+..++......... +......+- ......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 3556666666665443221 221111111 11122344555555555544322 2223333344444455666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010458 369 ESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAI 411 (510)
Q Consensus 369 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 411 (510)
...++.|.... .....-.--+..++...|+.+.|...|..+.
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 66666554321 1112222334455666666666666666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.35 E-value=0.091 Score=38.27 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH----c
Q 010458 363 NQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEE----Q 434 (510)
Q Consensus 363 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 434 (510)
.+.++|..++++..+.| +......|...|.. ..+.++|.++|+++.+. + ++.....|...|.. .
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g---~~~a~~~Lg~~y~~G~gv~ 108 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N---DQDGCLILGYKQYAGKGVV 108 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--C---cchHHHHHHHHHHcCCccC
Confidence 45556666666665554 33344444444433 34566677777766654 2 34444445555544 3
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 010458 435 GDIDGAEHLLVTLRNAGH 452 (510)
Q Consensus 435 g~~~~A~~~~~~~~~~~~ 452 (510)
.+.++|.++|++..+.|.
T Consensus 109 ~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 109 KNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 456677777776666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.00 E-value=0.086 Score=38.39 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 010458 328 GEFEKAENIYDEWESISGTGDPRVPNILLAAYIN----RNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLK----KGQ 399 (510)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 399 (510)
.+.++|.+++++..+.+ ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555433 23333444444433 235666677777666654 33444444444443 346
Q ss_pred HHHHHHHHHHHhhc
Q 010458 400 MEKVLECFKKAIGS 413 (510)
Q Consensus 400 ~~~a~~~~~~~~~~ 413 (510)
.++|.++|+++.+.
T Consensus 111 ~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 111 EKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 66777777766654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.96 E-value=0.15 Score=35.81 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=86.1
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCHH
Q 010458 290 TNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEKAENIYDEWESISGTGDPR---VPNILLAAYINRNQLE 366 (510)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 366 (510)
...|..++..+++.+..... +..-|+.++.-....-+-+...+.++.+-+ ..|.. -...++.++...+.
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDls~C~Nlk~vv~C~~~~n~-- 84 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNT-- 84 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTC--
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhh---hcCchhhhcHHHHHHHHHHhcc--
Confidence 44577777777777766542 445566666666666666666666666543 11211 12223333333222
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010458 367 MAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVT 446 (510)
Q Consensus 367 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (510)
+...+...+.....+|+-++..++++...+ +-+|++.....+..+|.+.|...++.+++.+
T Consensus 85 ----------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~k---n~~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 85 ----------------LNEHVNKALDILVIQGKRDKLEEIGREILK---NNEVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp ----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 334555666677778888888788777665 4567788888888888888888888888888
Q ss_pred HHhCCCC
Q 010458 447 LRNAGHV 453 (510)
Q Consensus 447 ~~~~~~~ 453 (510)
+.+.|..
T Consensus 146 ACe~G~K 152 (161)
T d1wy6a1 146 ACKKGEK 152 (161)
T ss_dssp HHHTTCH
T ss_pred HHHHhHH
Confidence 8877754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.96 E-value=0.15 Score=35.80 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010458 179 NHMLNLYISNGQLDKVPQMLQELKKNTSPDVVTYNLWLAACASQNDKETAEKAFLELKKTK 239 (510)
Q Consensus 179 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 239 (510)
...++...+.|+-++..++++.+.+...+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3334444444444444444444444444444444444455555555555555555444444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.33 Score=34.18 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Q 010458 381 KPCYTTWELLTWGYLKKGQ---MEKVLECFKKAIGSVRKWVPDH-RLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTE 456 (510)
Q Consensus 381 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 456 (510)
.|...|--....++.++.+ .++++.++++..+. .+.+. ..+..+..+|.+.|++++|.+.++.+.+..|.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 4555565566666666543 45778888877753 22233 46667777788888888888888888888777644
Q ss_pred H
Q 010458 457 I 457 (510)
Q Consensus 457 ~ 457 (510)
.
T Consensus 109 A 109 (124)
T d2pqrb1 109 V 109 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.76 E-value=0.52 Score=31.16 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010458 399 QMEKVLECFKKAIGSVRKWVPDHRLITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRT 464 (510)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 464 (510)
+.-++.+-+..+... .+.|++.+..+.+++|.+.+++..|.++++-++...-.+...|..++.-
T Consensus 21 D~we~rrgmN~l~~~--DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGY--DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTS--SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc--ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 455677777777766 7889999999999999999999999999998876544445566666544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=2.9 Score=37.28 Aligned_cols=203 Identities=10% Similarity=-0.027 Sum_probs=114.1
Q ss_pred cCChHHHHHHHHHHHHccCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 010458 257 MELPEKAATTLKEMEKRTCRKNRVAYSSL----LSLYTNMGYKDEVLRIWKKMMSLFAKMNDAEYTCVISSLVKLGEFEK 332 (510)
Q Consensus 257 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 332 (510)
..+.+.|...+......... +...+..+ .......+..+.+...+......+ .+.......+......+++..
T Consensus 227 ~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred ccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHH
Confidence 35788888888887765333 22222222 222334566777877777665543 344444555555667889999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010458 333 AENIYDEWESISGTGDPRVPNILLAAYINRNQLEMAESFYNRLVTKGIKPCYTTWELLTWGYLKKGQMEKVLECFKKAIG 412 (510)
Q Consensus 333 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 412 (510)
+...+..+.... .....-.--+..++...|+.+.|...|..+... ++ -|..|... +.|..-. + -..
T Consensus 304 ~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~---~---~~~ 369 (450)
T d1qsaa1 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYE---L---KID 369 (450)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCC---C---CCC
T ss_pred HHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCC---C---CcC
Confidence 998888765321 222333456788889999999999999988752 33 34333322 1221100 0 000
Q ss_pred ccCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--ChHHHHHHH
Q 010458 413 SVRKWVPDHR----LITAAYNKLEEQGDIDGAEHLLVTLRNAGHVSTEIYNSLLRTYAKAGK--MPLIIVERM 479 (510)
Q Consensus 413 ~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~~~~m 479 (510)
. ....+... .-..-+..+...|+...|...|..+.... ++.....+.....+.|. .|+....+.
T Consensus 370 ~-~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 370 K-APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp C-CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred C-CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0 00000000 01123455667788888888887776532 45556667777777777 555444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.40 E-value=1.2 Score=31.27 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010458 242 PDWISYSTLTSLYIKME---LPEKAATTLKEMEKRTCRKNRVAYSSLLSLYTNMGYKDEVLRIWKKMMS 307 (510)
Q Consensus 242 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (510)
++..+--...-++.++. +.++++.+++++.+.++.-....+..|.-+|.+.|++++|..+++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33334333444444433 2345555666555442221123445555556666666666666666655
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.31 E-value=4.4 Score=26.64 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010458 227 TAEKAFLELKKTKIDPDWISYSTLTSLYIKMELPEKAATTLKEMEKR 273 (510)
Q Consensus 227 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 273 (510)
+..+-++.+....+.|++....+.+++|.+.+++.-|.++|+.++.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444555555555666666666666666666666666666655543
|