Citrus Sinensis ID: 010459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MESVVSLHLHNNNNTHCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF
Secondary Structure (PSIPRED)
cHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccHHHHHHHHHHHHHcccccccEEEcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHcccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHcc
Coil and Loop (DISEMBL)
MESVVSLhlhnnnnthCKVRlnknkknklthDRVFFAKTLirkpisccclssapsldyhstkhTTLLVESYHEHQALNALIQRLNkkvscplqilqhdgdwtkDHFWAVIRFLKnssrsrqipqVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMegfalkpslEIYNSIIHGYSKIGKFNEALLFLNEmkemnlspqsdtyDGLIQAYGKYKMYDEIDMCLKmmkldgcspdhiTYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSelptrhvkpdiVTIGILYdarrigfdgtGALEMWKRIGFLFKtveintdplVLAVYGKGHFLRYCEEVYsslepysrekkrWTYQNLIDLVIKhngknldgtf
Flexible Loop (DISEMBL)
MESVVSlhlhnnnnthckvrlnknkknkltHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLknssrsrqipqVFDMWKNIEKsrinefnsqKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLnsrtplkedlVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLlselptrhvkpdiVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSslepysrekKRWTYQNLIDLvikhngknldgtf
Low Complexity Region (SEG)
MESVVSLHLHNNNNTHCKVRLnknkknkLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF
Disordered region (IsUnstruct)
**************THCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKH*********
Disordered Region (DISOPRED)
MESVVSLHLHNNNNTHCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF
Disordered Region (DISEMBL)
MESVVSLHLHNNNNTHCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF
Disordered Region (DISPRO)
MESVVSLHLHNNNNTHCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNG*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESVVSLHLHNNNNTHCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDGTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
O23278	501	Pentatricopeptide repeat-	yes	no	0.909	0.926	0.555	1e-143
Q9M2A1	415	Pentatricopeptide repeat-	no	no	0.694	0.853	0.265	1e-21
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.660	0.411	0.223	8e-18
P0C894	761	Putative pentatricopeptid	no	no	0.498	0.333	0.246	4e-17
Q940A6	838	Pentatricopeptide repeat-	no	no	0.305	0.186	0.314	2e-16
Q9FKC3	508	Pentatricopeptide repeat-	no	no	0.5	0.501	0.230	6e-16
Q9SIC9	918	Pentatricopeptide repeat-	no	no	0.590	0.327	0.238	6e-15
Q9LFC5	729	Pentatricopeptide repeat-	no	no	0.660	0.462	0.223	8e-15
Q9S7Q2	862	Pentatricopeptide repeat-	no	no	0.452	0.267	0.258	8e-14
O81028	799	Pentatricopeptide repeat-	no	no	0.517	0.330	0.255	1e-13

>sp|O23278|PP310_ARATH Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2

 Score =  510 bits (1313), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/472 (55%), Positives = 336/472 (71%), Gaps = 8/472 (1%)

Query: 35  FFAKTLIRKPISCCCLSSAP-SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQ 93
           F   T    P       S P S++  +T+ T+LL    H H+ L++L +RL+   SCPL+
Sbjct: 30  FLTSTSYSIPRPSSLRRSLPLSINGDATQPTSLL----HHHRFLSSLTRRLSLSGSCPLR 85

Query: 94  ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153
           +LQ DGDW+KDHFWAVIRFL+ SSR  +I  VFD WKN+E SRI+E N ++II  LCEE 
Sbjct: 86  LLQEDGDWSKDHFWAVIRFLRQSSRLHEILPVFDTWKNLEPSRISENNYERIIRFLCEEK 145

Query: 154 LMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            M EA+RAF+ M +   L PSLEIYNSIIH Y+  GKF EA+ +LN MKE  L P ++TY
Sbjct: 146 SMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETY 205

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           DGLI+AYGK+KMYDEI +CLK M+ DGC  DH+TYNLLI+EF+  GLLKRME  Y+S+++
Sbjct: 206 DGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMS 265

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           ++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI+N MFSR
Sbjct: 266 RKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSR 325

Query: 333 LDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
           LDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A+V WN T ANI LL
Sbjct: 326 LDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALL 385

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
           AY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDGTG    WK+IGFL K V
Sbjct: 386 AYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPV 445

Query: 452 EINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIKHN 502
           E+ TDPLV A +GKG FLR CEEV + SL     E K WTYQ L++LV+K+ 
Sbjct: 446 EMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVKNQ 497

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2A1|PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 173/391 (44%), Gaps = 37/391 (9%)

Query: 130 KNIEKSRINEFNSQKI--------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
           K I++S+++   SQKI        +  L +  L + A   F + +   L P+     +++
Sbjct: 30  KLIKESKLSRDFSQKIQIVDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALM 89

Query: 182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
             +++ G    A    +E+      P       LI AY ++  +DE+    K +      
Sbjct: 90  LCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSK 149

Query: 242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
              +  +L I  F   G L+ MEG  + M +K + L + T   I+  Y  FG LDKMEK 
Sbjct: 150 LLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKA 209

Query: 302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSH 358
           Y R+      ++E+ +R +   Y+K   F RL +   D+   +GR  L   +W   LLS+
Sbjct: 210 YGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSY 267

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           A     + +      M  A    ++TT NI  LA+ +M  F  L + L  +   ++ PD+
Sbjct: 268 AADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDL 327

Query: 419 VTIGILYDA---RRIGFDGTGALEMWKRIGFLFKTVEIN------TDPLVLAVYGKGHFL 469
           VT G + DA   +R+           + + F++  + ++      TDPL   V GKG F 
Sbjct: 328 VTFGCVVDAYMDKRLA----------RNLEFVYNRMNLDDSPLVLTDPLAFEVLGKGDFH 377

Query: 470 RYCEEVYSSLEPYSREKKRWTYQNLIDLVIK 500
              E V     P    +K WTY+ LI + +K
Sbjct: 378 LSSEAVL-EFSP----RKNWTYRKLIGVYLK 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 21/358 (5%)

Query: 101 WTKDHFWAVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAV 159
           + K  + A++     S R ++  +V  +M  N     I  +NS  +I     +G+++EA+
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS--LISAYARDGMLDEAM 369

Query: 160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
               +M     KP +  Y +++ G+ + GK   A+    EM+     P   T++  I+ Y
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 220 GK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           G         K++DEI++C       G SPD +T+N L+  F   G+   + G +K M  
Sbjct: 430 GNRGKFTEMMKIFDEINVC-------GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
                   T   ++ AY   G  ++    Y+R+L++           +     +  M+ +
Sbjct: 483 AGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542

Query: 333 LDDLGDDLA-SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
            + +  ++   R    EL +C  L ++A       + S+  E+ S  +         ++L
Sbjct: 543 SEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVL 602

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGF 446
              K           SEL  R   PDI T+  +   Y  R++     G L+  K  GF
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660

Arabidopsis thaliana (taxid: 3702)

>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 34/288 (11%)

Query: 135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL 194
           +R   F    +I  +C+EG +E A   F+EM+   L P    YNS+I G+ K+G+ ++ +
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317

Query: 195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF 254
            F  EMK+M   P   TY+ LI  + K+          + MK +G  P+ ++Y+ L+  F
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377

Query: 255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE 314
              G++++    Y  M    +     T  +++DA    G L    +           L  
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR-----------LGN 426

Query: 315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREM 374
           ++++   E  +  Y  + +D L D  A R+   E                     +  +M
Sbjct: 427 EMLQVGVEWNVVTYT-ALIDGLCD--AERMKEAE--------------------ELFGKM 463

Query: 375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
           ++A V  N+ + N ++  ++K K+      LL+EL  R +KPD++  G
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511

Arabidopsis thaliana (taxid: 3702)

>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%)

Query: 146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
           I   C+ G +EEAV+ F +ME   + P++  +N++I G    G+++EA +F  +M E  +
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339

Query: 206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG 265
            P   TY  L++   + K   +    LK M   G  P+ I YN LI  F  AG L +   
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399

Query: 266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN 307
               M++K + L SST   ++  Y   G  D  E+  K +L+
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 127/269 (47%), Gaps = 14/269 (5%)

Query: 171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM 230
           +P +  Y+ +I  + ++  F++    L++M+   + P + TY+ LI AYGK KM+ E++ 
Sbjct: 218 QPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMES 277

Query: 231 CL-KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY 289
            L +M+  D C PD  T N  ++ F   G ++ ME  Y+   +  +     T   +LD+Y
Sbjct: 278 TLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSY 337

Query: 290 MNFG-------MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS 342
              G       +++ M+K++         +  D   +  ++    Y+F  +       + 
Sbjct: 338 GKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQ------SE 391

Query: 343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL 402
           RI  + +  C  + ++        I  V+R +E++ +R ++   N ++ AY +M+ F  +
Sbjct: 392 RIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEM 451

Query: 403 RVLLSELPTRHVKPDIVTIGILYDARRIG 431
           + +L  +  +  KPD +T   +  A RI 
Sbjct: 452 KGVLELMEKKGFKPDKITYRTMVKAYRIS 480

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 26/327 (7%)

Query: 142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           +  +I  L   G +  A R F+         ++  ++++I  Y + G   EA+   N MK
Sbjct: 236 ASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMK 295

Query: 202 EMNLSPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL 260
           E  L P   TY+ +I A GK  M + ++      M+ +G  PD IT+N L+   +  GL 
Sbjct: 296 EYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLW 355

Query: 261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL 320
           +     +  M  +R+     +   +LDA    G +D   +   ++     P+K    R +
Sbjct: 356 EAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM-----PVK----RIM 406

Query: 321 AEVYIKNYMFSRLDDLG--DDLASRIGRTE-LVWCLRLLSHACLLS--------HRGIDS 369
             V   + +       G  D+  +  G    L   L  +S+  LLS           +D 
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALD- 465

Query: 370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR 429
           ++REM S  ++ +V T N +L  Y K   +  ++ + +E+   HV P+++T   L D   
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS 525

Query: 430 IGFDGTGALEMWKRIGFLFKTVEINTD 456
            G     A+E+++     FK+  +  D
Sbjct: 526 KGGLYKEAMEIFRE----FKSAGLRAD 548

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 145/349 (41%), Gaps = 12/349 (3%)

Query: 128 MWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
           +++ I +S   IN +    ++  LC++G ME+      +++   + P +  YN++I  YS
Sbjct: 222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYS 281

Query: 186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
             G   EA   +N M     SP   TY+ +I    K+  Y+        M   G SPD  
Sbjct: 282 SKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 341

Query: 246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
           TY  L+ E    G +   E  +  M ++ +        +++  +   G LDK   ++  +
Sbjct: 342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401

Query: 306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365
             +       +   L + Y +  M S   +L +++  +    ++V    +L   C     
Sbjct: 402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461

Query: 366 G-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
           G  D +  EM    +  +  T  I++  + K+ + ++   L  ++  + ++ D+VT   L
Sbjct: 462 GEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521

Query: 425 YDARRIGFDGTGALEMWKRIGFLFKTVEINTDP-----LVLAVYGKGHF 468
            D    GF   G ++  K I     + EI   P     LV A+  KGH 
Sbjct: 522 LD----GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHL 566

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           +I +  E G  +E V  F +M    ++P +E Y  II    K G   +A   L  M   +
Sbjct: 393 LIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAND 452

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME 264
           + P S  Y G+I+A+G+  +Y+E  +    M   G +P   T++ L+  FA  GL+K  E
Sbjct: 453 IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESE 512

Query: 265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY 324
                ++   +     T  A ++AY   G  ++  K Y  +  SR     D   +  E  
Sbjct: 513 AILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRC----DPDERTLEAV 568

Query: 325 IKNYMFSRLDD-----LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           +  Y F+RL D       +  AS I  + + +C+ L  +        ++ ++ EM S +V
Sbjct: 569 LSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRV 628

Involved in plastid gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
           G +EEA    QEM+   + P +  Y ++I GY   GK  +AL  ++EM    +SP   TY
Sbjct: 402 GRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITY 461

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           + L+    +    +E+    + MK +G  P+ +T +++I+    A  +K  E  + S+  
Sbjct: 462 NVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-AEVYIKNYMFS 331
           K    ++S     +  Y   G+  K  K + RL     PL++ +  KL   + I+ Y+  
Sbjct: 522 KCPENKAS----FVKGYCEAGLSKKAYKAFVRL---EYPLRKSVYIKLFFSLCIEGYLEK 574

Query: 332 RLDDLGDDLASRI--GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVTTANI 388
             D L    A R+  GR+    C +++   C L++ R    +   M    +  ++ T  I
Sbjct: 575 AHDVLKKMSAYRVEPGRS---MCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTI 631

Query: 389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
           ++  Y ++ + +    L  ++  R +KPD+VT  +L D
Sbjct: 632 MIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
356569072	509	PREDICTED: pentatricopeptide repeat-cont	0.956	0.958	0.594	1e-174
255550708	502	pentatricopeptide repeat-containing prot	0.901	0.916	0.632	1e-172
356540106	506	PREDICTED: pentatricopeptide repeat-cont	0.950	0.958	0.585	1e-169
225463331	581	PREDICTED: pentatricopeptide repeat-cont	0.852	0.748	0.648	1e-169
224131534	419	predicted protein [Populus trichocarpa]	0.788	0.959	0.649	1e-158
147862853	1697	hypothetical protein VITISV_017362 [Viti	0.717	0.215	0.644	1e-143
79474381	501	pentatricopeptide repeat-containing prot	0.909	0.926	0.555	1e-142
297800842	502	binding protein [Arabidopsis lyrata subs	0.872	0.886	0.552	1e-139
2244775	561	salt-inducible protein homolog [Arabidop	0.796	0.723	0.573	1e-131
255685506	177	At4g14190-like protein [Arabidopsis thal	0.345	0.994	0.553	8e-47

>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190, chloroplastic-like [Glycine max]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 298/501 (59%), Positives = 386/501 (77%), Gaps = 13/501 (2%)

Query: 11  NNNNTHCKVRL---NKNKKNKLTHDRVFFAKTLI--RKPISCCCLSSAPSLDYH---STK 62
           ++N +H  V L   N N +   + +   F K  +  R   +  C SS     YH    TK
Sbjct: 6   SHNQSHFLVVLLNSNSNCRGSKSGNNTVFRKPFVKFRTLTTQICHSS-----YHRFADTK 60

Query: 63  HTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQI 122
           HTTLLVE+YH H +L AL+ +L K+   PL +L  DGDW+KDHFWAV+RFLK++SR  QI
Sbjct: 61  HTTLLVETYHLHDSLRALLAKLQKEDCNPLHVLAEDGDWSKDHFWAVVRFLKSASRFTQI 120

Query: 123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH 182
            QVFDMWKNIEKSRI+EFN  KIIG+LCE G ME+A+ A ++M+   +KPSL+ YN IIH
Sbjct: 121 LQVFDMWKNIEKSRISEFNYNKIIGLLCEGGKMEDALSALRDMKVQGIKPSLDTYNPIIH 180

Query: 183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP 242
           G S+ GKF++AL F++EMKE  L   S+TYDGL+ AYGK++MYDE+  C+K M+L+GCSP
Sbjct: 181 GLSREGKFSDALRFIDEMKESGLELDSETYDGLLGAYGKFQMYDEMGECVKKMELEGCSP 240

Query: 243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY 302
           DHITYN+LIQE+A AGLL+RME  Y+ M++KRMH++SST+VA+L+AY  FGM++KME FY
Sbjct: 241 DHITYNILIQEYARAGLLQRMEKLYQRMVSKRMHVQSSTLVAMLEAYTTFGMVEKMENFY 300

Query: 303 KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL 362
           +++L+S+T L++DL+RK+AEVYIKNYMFSRL+DL  DL    G + LVWCLRLLS+AC L
Sbjct: 301 RKILSSKTCLEDDLIRKVAEVYIKNYMFSRLEDLALDLCPAFGESNLVWCLRLLSYACPL 360

Query: 363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG 422
           S +G+D VVREM  AKV WNVT ANII+LAY+KMKDF+HL++LLS+LP   V+PDI+TIG
Sbjct: 361 SKKGMDIVVREMRDAKVNWNVTVANIIMLAYVKMKDFRHLKILLSQLPIYRVQPDIITIG 420

Query: 423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPY 482
           IL+DA RIGFDG+GALE W+R+G+L++ VEI TD LVL  +GKGHFL+ CEEVYSSL P 
Sbjct: 421 ILFDATRIGFDGSGALETWRRMGYLYRVVEIKTDSLVLTAFGKGHFLKSCEEVYSSLHPE 480

Query: 483 SREKKRWTYQNLIDLVIKHNG 503
            R++K WTY +LI L+ KH G
Sbjct: 481 DRKRKTWTYHDLIALLSKHTG 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550708|ref|XP_002516403.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544501|gb|EEF46020.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 294/465 (63%), Positives = 368/465 (79%), Gaps = 5/465 (1%)

Query: 48  CCLSSAP----SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTK 103
           C   SAP    S D +S KH TLLVESYHEHQ L AL+ RLNKK SCPLQ+LQ D DW+K
Sbjct: 39  CFRRSAPLHAISQD-NSIKHNTLLVESYHEHQRLKALLARLNKKGSCPLQMLQDDADWSK 97

Query: 104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQ 163
           DHFWAVIRFL++SSRS +I QVFDMWK+IEKSRINEFN +K+I +L EEGL+E+A  AF 
Sbjct: 98  DHFWAVIRFLRHSSRSDEILQVFDMWKDIEKSRINEFNYEKVIEILGEEGLIEDAYSAFI 157

Query: 164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK 223
           EM+   L PSL++YNS+IHGY++ GKF++A+ +LN +KE+NLSP SDTY+GLIQAYGKYK
Sbjct: 158 EMKTLCLSPSLQVYNSLIHGYARNGKFDDAVFYLNHLKEINLSPVSDTYNGLIQAYGKYK 217

Query: 224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV 283
           MYDE+ MCLK M+++GCSPDH+TYNLLIQE A AGLL RME  Y++    RM L+S+T+ 
Sbjct: 218 MYDEMGMCLKKMEMEGCSPDHVTYNLLIQELAEAGLLTRMEKVYQTTRMNRMDLKSTTLT 277

Query: 284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR 343
           A+L+AY NFG+++KME   KR  NS+  LKEDL++K+A VYI+N+MFSRL+ LG  L+ R
Sbjct: 278 AMLEAYANFGIVEKMELILKRTRNSKALLKEDLIKKIALVYIENFMFSRLEKLGHYLSKR 337

Query: 344 IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLR 403
            G+ ++VWCL LLS+AC+LS +G+DSVVREM+ AKV WNVT  NIILLAYLKMKD   L 
Sbjct: 338 SGQNDMVWCLLLLSNACMLSQKGMDSVVREMKVAKVSWNVTFINIILLAYLKMKDSMRLG 397

Query: 404 VLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVY 463
           +LLS L    VKPDIVT+G+L+DA  IGF G G LE W+R G L++ VE  TDPLVLA +
Sbjct: 398 ILLSTLTNHIVKPDIVTVGVLFDANNIGFHGNGILETWRRTGILYRCVETETDPLVLAAF 457

Query: 464 GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLDG 508
           GKG FL+ CEE YSSLEP +R+K++WTY NLIDLV  ++G  ++G
Sbjct: 458 GKGQFLKKCEEAYSSLEPVARQKEKWTYCNLIDLVATYDGSVVNG 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540106|ref|XP_003538531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190, chloroplastic-like [Glycine max]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 284/485 (58%), Positives = 370/485 (76%)

Query: 19  VRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKHTTLLVESYHEHQALN 78
           V LN N +   +     F K   +       +  A    +  TKHTTLLVE+YH H +L 
Sbjct: 15  VLLNSNCRGSKSSSNTVFRKPFAKFSSLTTKICHASYHRFADTKHTTLLVETYHLHHSLR 74

Query: 79  ALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN 138
           AL+ +L  + S PL +L  D DW+KDHFWAV+RFLK+SS    I QVFDMWKNIEKSRI+
Sbjct: 75  ALLAKLENEYSNPLHMLAEDADWSKDHFWAVVRFLKSSSNFTHILQVFDMWKNIEKSRIS 134

Query: 139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLN 198
           EFN  KIIG+LCE G M++A+ A Q+M+   +KPSL+ YN IIHG S+ GKF++AL F++
Sbjct: 135 EFNYNKIIGLLCEGGKMKDALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFID 194

Query: 199 EMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 258
           EMKE  L   S+TYDGLI AYGK++MYDE+  C+K M+L+GCSPD ITYN+LIQE+A  G
Sbjct: 195 EMKESGLELDSETYDGLIGAYGKFQMYDEMGECVKKMELEGCSPDPITYNILIQEYAGGG 254

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LL+RME  Y+ ML+KRMH++SST+VA+L+AY  FGM++KMEKFY+++LNS+T +++DL+R
Sbjct: 255 LLQRMEKLYQRMLSKRMHVKSSTLVAMLEAYTTFGMVEKMEKFYRKILNSKTCIEDDLIR 314

Query: 319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK 378
           K+AEVYI N+MFSRL+DL  DL    G + L WC RLLS+ACLLS +G+D VV+EM+ AK
Sbjct: 315 KVAEVYINNFMFSRLEDLALDLCPAFGESNLEWCFRLLSYACLLSKKGMDIVVQEMQDAK 374

Query: 379 VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL 438
           V WNVT ANII+LAY+KMK+F+HLR+LLS+LP   V+PDI+TIGIL+DA RIGFDG+GAL
Sbjct: 375 VSWNVTVANIIMLAYVKMKEFRHLRILLSQLPIYRVQPDIITIGILFDATRIGFDGSGAL 434

Query: 439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLV 498
           E W+R+G+L++ VE+ TD LVL  +GKGHFL+ CEEVYSSL P  R++K  TY +LI L+
Sbjct: 435 ETWRRMGYLYRVVEMKTDSLVLTAFGKGHFLKSCEEVYSSLHPEDRKRKTCTYHDLIPLL 494

Query: 499 IKHNG 503
            KH G
Sbjct: 495 SKHTG 499

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463331|ref|XP_002268109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190, chloroplastic-like [Vitis vinifera]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/435 (64%), Positives = 357/435 (82%)

Query: 59  HSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSR 118
           + TKHTTLLVE+ HE++ L  LIQ+L+ K S PLQ+L+ DGDW K HFWAVIRFLK++SR
Sbjct: 85  NPTKHTTLLVETLHENERLGVLIQKLSNKASSPLQLLRDDGDWNKQHFWAVIRFLKDASR 144

Query: 119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN 178
           S +I  VF +WK+++KSRINEFN  KIIG+L +E L EE+V A + M+   LKPSLEIYN
Sbjct: 145 SSEILPVFHLWKDMDKSRINEFNYAKIIGLLSQEDLAEESVLALEGMKTHGLKPSLEIYN 204

Query: 179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD 238
            +IH +++ G+F+ AL FLNE+K  NL   ++TYDGLIQ+YGKYKMYDE+D C+K M+ D
Sbjct: 205 LVIHCFARKGEFDRALYFLNELKANNLIADTETYDGLIQSYGKYKMYDELDECVKKMESD 264

Query: 239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM 298
           GC PDHITYNLLIQEF+  GLLKRME  ++++L+K+M L+SST+V +L+AY NFG+++KM
Sbjct: 265 GCLPDHITYNLLIQEFSRGGLLKRMERVFQTVLSKKMGLQSSTLVVMLEAYANFGIIEKM 324

Query: 299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH 358
           E  Y+R+LNS+T LK+DL+RKLAEVYI+NY FSRL D+G +LAS   RT+LVWCLRLLSH
Sbjct: 325 ENAYRRVLNSKTSLKDDLIRKLAEVYIENYKFSRLADMGLNLASVTSRTDLVWCLRLLSH 384

Query: 359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
           ACLLS +G+DS+V+EME+  V WN T AN ILLAYLKMKDF  LR+LL EL TRHVKPDI
Sbjct: 385 ACLLSRKGLDSIVKEMEAKNVPWNATVANTILLAYLKMKDFTRLRILLLELSTRHVKPDI 444

Query: 419 VTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS 478
           VT+GIL+DA RIGF+GT AL  W+R GFL + VE+NTDPLVL+ +GKG+FL+ CEE+YSS
Sbjct: 445 VTVGILFDANRIGFNGTMALNTWRRTGFLDEAVEMNTDPLVLSAFGKGNFLQSCEEMYSS 504

Query: 479 LEPYSREKKRWTYQN 493
           LEP +R+KK WTYQN
Sbjct: 505 LEPEARKKKIWTYQN 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131534|ref|XP_002321108.1| predicted protein [Populus trichocarpa] gi|222861881|gb|EEE99423.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/419 (64%), Positives = 330/419 (78%), Gaps = 17/419 (4%)

Query: 97  HDGDWTKDHFWAVIRFLKNSSRSRQIPQV-----------------FDMWKNIEKSRINE 139
            DGDW+KD FW+VI+FLK S+RS QI QV                 F MW+++EK+RINE
Sbjct: 1   QDGDWSKDDFWSVIKFLKLSARSNQILQVHSLAHLFFLAARKIEFVFHMWRDVEKTRINE 60

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNE 199
           FN +KIIG+L EEGLME+AV AF EM+ F L  SLE+YNSIIHGY++ GKF++AL +LN+
Sbjct: 61  FNYEKIIGLLGEEGLMEDAVTAFMEMKSFGLCLSLEVYNSIIHGYARNGKFDDALFYLNQ 120

Query: 200 MKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL 259
           M EMNLSP+SDTYDGLI+AYG Y+MYDE+ MCLK M+LDGCSPD  TYNLLIQ+FA  GL
Sbjct: 121 MNEMNLSPESDTYDGLIEAYGTYRMYDEMAMCLKKMELDGCSPDRYTYNLLIQKFAQGGL 180

Query: 260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK 319
           L RME  Y+SM TKRM L+SST++++L+AY NFG+++KMEK  +   NS+  +KEDLVRK
Sbjct: 181 LTRMERVYQSMRTKRMKLQSSTLISMLEAYANFGIVEKMEKILRWAWNSKITVKEDLVRK 240

Query: 320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV 379
           LA VYI NYMFSRL DL  DL S  GRT++VWCL LLSHACLLS RG+D+VVREME AK 
Sbjct: 241 LAGVYIANYMFSRLHDLAVDLTSITGRTDIVWCLHLLSHACLLSRRGMDAVVREMEDAKA 300

Query: 380 RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
            WN+T ANIILLAYLKMKDF  LR+LLS+LP   V+PDIVT GIL+DA  IGFDG   LE
Sbjct: 301 CWNITVANIILLAYLKMKDFTRLRILLSKLPEIRVEPDIVTFGILFDAEEIGFDGKECLE 360

Query: 440 MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLV 498
           MW+++G L++ VE+NTDPL L+ +GKG FLR CEE YSSLEP +REKKRWTY + I+LV
Sbjct: 361 MWRKMGLLYRRVEMNTDPLALSAFGKGSFLRSCEEGYSSLEPNAREKKRWTYVDFINLV 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862853|emb|CAN80932.1| hypothetical protein VITISV_017362 [Vitis vinifera]

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/366 (64%), Positives = 298/366 (81%)

Query: 67   LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF 126
            LVE+ HE++ L  LIQ+L+ K S PLQ+L+ DGDW K HFWAVIRFLK++SRS +I  VF
Sbjct: 1332 LVETLHENERLGVLIQKLSNKASSPLQLLRDDGDWNKQHFWAVIRFLKDASRSSEILPVF 1391

Query: 127  DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
             +WK+++KSRINEFN  KIIG+L +E L EE+V A + M+   LKPSLEIYN +IH +++
Sbjct: 1392 HLWKDMDKSRINEFNYAKIIGLLSQEDLAEESVLALEXMKTHGLKPSLEIYNLVIHCFAR 1451

Query: 187  IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT 246
             G+F+ AL FLNE+K  NL   ++TYDGLIQ+YGKYKMYDE+D C+K M+ DGC PDHIT
Sbjct: 1452 KGEFDRALYFLNELKXNNLIADTETYDGLIQSYGKYKMYDELDECVKKMESDGCLPDHIT 1511

Query: 247  YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL 306
            YNLLIQEF+  GLLKRME  ++++L+K+M L+SST+V +L+AY NFG+++KME  Y+R+L
Sbjct: 1512 YNLLIQEFSRGGLLKRMERVFQTVLSKKMGLQSSTLVVMLEAYANFGIIEKMENAYRRVL 1571

Query: 307  NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG 366
            NS+T LK+DL+RKLAEVYI+NY FSRL D+G DLAS   RT+LVWCLRLLSHACLLS +G
Sbjct: 1572 NSKTSLKDDLIRKLAEVYIENYKFSRLADMGLDLASVTSRTDLVWCLRLLSHACLLSRKG 1631

Query: 367  IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
            +DS+V+EME+  V WN T AN ILLAYLKMKDF  LR+LL EL TRHVKPDIVT+GIL+D
Sbjct: 1632 LDSIVKEMEAKNVPWNATVANTILLAYLKMKDFTRLRILLLELSTRHVKPDIVTVGILFD 1691

Query: 427  ARRIGF 432
            A RI F
Sbjct: 1692 ANRIEF 1697

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79474381|ref|NP_193155.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635638|sp|O23278.2|PP310_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14190, chloroplastic; Flags: Precursor gi|332657991|gb|AEE83391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/472 (55%), Positives = 336/472 (71%), Gaps = 8/472 (1%)

Query: 35  FFAKTLIRKPISCCCLSSAP-SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQ 93
           F   T    P       S P S++  +T+ T+LL    H H+ L++L +RL+   SCPL+
Sbjct: 30  FLTSTSYSIPRPSSLRRSLPLSINGDATQPTSLL----HHHRFLSSLTRRLSLSGSCPLR 85

Query: 94  ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153
           +LQ DGDW+KDHFWAVIRFL+ SSR  +I  VFD WKN+E SRI+E N ++II  LCEE 
Sbjct: 86  LLQEDGDWSKDHFWAVIRFLRQSSRLHEILPVFDTWKNLEPSRISENNYERIIRFLCEEK 145

Query: 154 LMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
            M EA+RAF+ M +   L PSLEIYNSIIH Y+  GKF EA+ +LN MKE  L P ++TY
Sbjct: 146 SMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETY 205

Query: 213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
           DGLI+AYGK+KMYDEI +CLK M+ DGC  DH+TYNLLI+EF+  GLLKRME  Y+S+++
Sbjct: 206 DGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMS 265

Query: 273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
           ++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI+N MFSR
Sbjct: 266 RKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSR 325

Query: 333 LDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
           LDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A+V WN T ANI LL
Sbjct: 326 LDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALL 385

Query: 392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
           AY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDGTG    WK+IGFL K V
Sbjct: 386 AYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPV 445

Query: 452 EINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIKHN 502
           E+ TDPLV A +GKG FLR CEEV + SL     E K WTYQ L++LV+K+ 
Sbjct: 446 EMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVKNQ 497

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800842|ref|XP_002868305.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297314141|gb|EFH44564.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/451 (55%), Positives = 335/451 (74%), Gaps = 6/451 (1%)

Query: 55  SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLK 114
           S++  +++ T+L+   +H H+ L++L +RL    SCPL++LQ  GDW+KDHFWAVIRFL+
Sbjct: 51  SINGDASQSTSLI---HHHHRFLSSLPRRLELPGSCPLRLLQEYGDWSKDHFWAVIRFLR 107

Query: 115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGFALKPS 173
           +SSR  +I  VFD WKN+E+SRI+E N +++I +LCEE  M EA+RAF+ M +   L PS
Sbjct: 108 HSSRLHEILPVFDAWKNLERSRISEANYERVIRLLCEEKSMNEAIRAFRGMIDDHELSPS 167

Query: 174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK 233
           LEIYNSIIHGY+  GKF EA+ +LN MKE  L P ++TYDGLI+AYGK+KMYDEI +CLK
Sbjct: 168 LEIYNSIIHGYADEGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIVLCLK 227

Query: 234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG 293
            M+ +GC  DH+TYNLLI+EF+  GLLKRME  Y+S+++++M L  ST++++L+AY  FG
Sbjct: 228 RMESEGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYAEFG 287

Query: 294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWC 352
           +++KME+   +++     L E LVRKLA VYI N MFSRLDDLG  + +SR  RT+L WC
Sbjct: 288 LIEKMEETCNKIIRFGISLDEGLVRKLANVYIDNLMFSRLDDLGRGISSSRTRRTDLAWC 347

Query: 353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR 412
           LRLL HA L+S +G+D V++EM+ A+V WN T ANI LLAY KM DFK + +LLSEL T+
Sbjct: 348 LRLLCHARLVSRKGLDYVIKEMKEARVPWNTTFANITLLAYSKMGDFKSIELLLSELRTK 407

Query: 413 HVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC 472
           HVK D+VT+GI++D    GFD TG    WK+IGFL K VE+ TDPLV A +GKG FL+ C
Sbjct: 408 HVKLDLVTVGIIFDLSEAGFDVTGVFMTWKKIGFLDKPVEMKTDPLVHAAFGKGKFLKSC 467

Query: 473 EEVYS-SLEPYSREKKRWTYQNLIDLVIKHN 502
           EEV + SL     E K WTYQ L+++V+K+ 
Sbjct: 468 EEVKNQSLGMRGEESKAWTYQYLMEVVVKNQ 498

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2244775|emb|CAB10198.1| salt-inducible protein homolog [Arabidopsis thaliana] gi|7268124|emb|CAB78461.1| salt-inducible protein homolog [Arabidopsis thaliana]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/422 (57%), Positives = 304/422 (72%), Gaps = 16/422 (3%)

Query: 97  HDGDWTKDHFWAVIRFLKNSSRSRQI-P------------QVFDMWKNIEKSRINEFNSQ 143
            DGDW+KDHFWAVIRFL+ SSR  +I P            QVFD WKN+E SRI+E N +
Sbjct: 136 EDGDWSKDHFWAVIRFLRQSSRLHEILPNMKMTFCFFFQLQVFDTWKNLEPSRISENNYE 195

Query: 144 KIIGMLCEEGLMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE 202
           +II  LCEE  M EA+RAF+ M +   L PSLEIYNSIIH Y+  GKF EA+ +LN MKE
Sbjct: 196 RIIRFLCEEKSMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKE 255

Query: 203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR 262
             L P ++TYDGLI+AYGK+KMYDEI +CLK M+ DGC  DH+TYNLLI+EF+  GLLKR
Sbjct: 256 NGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKR 315

Query: 263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE 322
           ME  Y+S+++++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA 
Sbjct: 316 MEQMYQSLMSRKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLAN 375

Query: 323 VYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW 381
           VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A+V W
Sbjct: 376 VYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPW 435

Query: 382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMW 441
           N T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDGTG    W
Sbjct: 436 NTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTW 495

Query: 442 KRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIK 500
           K+IGFL K VE+ TDPLV A +GKG FLR CEEV + SL     E K WTYQ L++LV+K
Sbjct: 496 KKIGFLDKPVEMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVK 555

Query: 501 HN 502
           + 
Sbjct: 556 NQ 557

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255685506|gb|ACU28242.1| At4g14190-like protein [Arabidopsis thaliana]

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR 318
           LLKRME  Y+S+++++M L  ST++++L+AY+ FG+++KME+   +++     L E LVR
Sbjct: 1   LLKRMEQMYQSLMSRKMTLEPSTLLSMLEAYVEFGLIEKMEETCNKIIRFGISLDEGLVR 60

Query: 319 KLAEVYIKNYMFSRLDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA 377
           KLA VYI+N MFSRLDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A
Sbjct: 61  KLANVYIENLMFSRLDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEA 120

Query: 378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG 434
           +V WN T ANI LLAY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDG
Sbjct: 121 RVPWNTTFANIALLAYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDG 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2129475	501	AT4G14190 "AT4G14190" [Arabido	0.907	0.924	0.556	1e-132
TAIR|locus:2096544	415	AT3G42630 [Arabidopsis thalian	0.703	0.865	0.282	3.7e-22
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.658	0.410	0.228	2e-16
TAIR|locus:2150024	729	AT5G01110 [Arabidopsis thalian	0.692	0.484	0.220	7.3e-15
TAIR|locus:2157732	723	EMB1006 "embryo defective 1006	0.580	0.409	0.216	1.5e-14
TAIR|locus:2195047	621	AT1G12620 [Arabidopsis thalian	0.688	0.565	0.238	2.5e-14
TAIR|locus:2039558	799	AT2G26790 [Arabidopsis thalian	0.525	0.335	0.251	5e-14
TAIR|locus:2019085	763	AT1G74580 "AT1G74580" [Arabido	0.6	0.401	0.25	6e-14
TAIR|locus:2168078	907	AT5G59900 "AT5G59900" [Arabido	0.821	0.461	0.240	2.2e-13
TAIR|locus:2827701	874	AT2G17140 [Arabidopsis thalian	0.623	0.363	0.257	3.4e-13

TAIR|locus:2129475 AT4G14190 "AT4G14190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
 Identities = 262/471 (55%), Positives = 336/471 (71%)

Query:    35 FFAKTLIRKPISCCCLSSAP-SLDYHSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQ 93
             F   T    P       S P S++  +T+ T+LL    H H+ L++L +RL+   SCPL+
Sbjct:    30 FLTSTSYSIPRPSSLRRSLPLSINGDATQPTSLL----HHHRFLSSLTRRLSLSGSCPLR 85

Query:    94 ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG 153
             +LQ DGDW+KDHFWAVIRFL+ SSR  +I  VFD WKN+E SRI+E N ++II  LCEE 
Sbjct:    86 LLQEDGDWSKDHFWAVIRFLRQSSRLHEILPVFDTWKNLEPSRISENNYERIIRFLCEEK 145

Query:   154 LMEEAVRAFQEM-EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY 212
              M EA+RAF+ M +   L PSLEIYNSIIH Y+  GKF EA+ +LN MKE  L P ++TY
Sbjct:   146 SMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETY 205

Query:   213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT 272
             DGLI+AYGK+KMYDEI +CLK M+ DGC  DH+TYNLLI+EF+  GLLKRME  Y+S+++
Sbjct:   206 DGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMS 265

Query:   273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR 332
             ++M L  ST++++L+AY  FG+++KME+   +++     L E LVRKLA VYI+N MFSR
Sbjct:   266 RKMTLEPSTLLSMLEAYAEFGLIEKMEETCNKIIRFGISLDEGLVRKLANVYIENLMFSR 325

Query:   333 LDDLGDDL-ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL 391
             LDDLG  + ASR  RTEL WCLRLL HA L+S +G+D VV+EME A+V WN T ANI LL
Sbjct:   326 LDDLGRGISASRTRRTELAWCLRLLCHARLVSRKGLDYVVKEMEEARVPWNTTFANIALL 385

Query:   392 AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV 451
             AY KM DF  + +LLSEL  +HVK D+VT+GI++D     FDGTG    WK+IGFL K V
Sbjct:   386 AYSKMGDFTSIELLLSELRIKHVKLDLVTVGIVFDLSEARFDGTGVFMTWKKIGFLDKPV 445

Query:   452 EINTDPLVLAVYGKGHFLRYCEEVYS-SLEPYSREKKRWTYQNLIDLVIKH 501
             E+ TDPLV A +GKG FLR CEEV + SL     E K WTYQ L++LV+K+
Sbjct:   446 EMKTDPLVHAAFGKGQFLRSCEEVKNQSLGTRDGESKSWTYQYLMELVVKN 496

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2096544 AT3G42630 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 109/386 (28%), Positives = 178/386 (46%)

Query:   130 KNIEKSRINEFNSQKI--------IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII 181
             K I++S+++   SQKI        +  L +  L + A   F + +   L P+     +++
Sbjct:    30 KLIKESKLSRDFSQKIQIVDYAPLVQTLSQRRLPDVAHEIFLQTKSVNLLPNYRTLCALM 89

Query:   182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS 241
               +++ G    A    +E+      P       LI AY ++  +DE+    K +      
Sbjct:    90 LCFAENGFVLRARTIWDEIINSCFVPDVFVVSKLISAYEQFGCFDEVAKITKDVAARHSK 149

Query:   242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF 301
                +  +L I  F   G L+ MEG  + M +K + L + T   I+  Y  FG LDKMEK 
Sbjct:   150 LLPVVSSLAISCFGKNGQLELMEGVIEEMDSKGVLLEAETANVIVRYYSFFGSLDKMEKA 209

Query:   302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL---VWCLRLLSH 358
             Y R+      ++E+ +R +   Y+K   F RL +   D+   +GR  L   +W   LLS+
Sbjct:   210 YGRVKKFGIVIEEEEIRAVVLAYLKQRKFYRLREFLSDVG--LGRRNLGNMLWNSVLLSY 267

Query:   359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI 418
             A     + +      M  A    ++TT NI  LA+ +M  F  L + L  +   ++ PD+
Sbjct:   268 AADFKMKSLQREFIGMLDAGFSPDLTTFNIRALAFSRMALFWDLHLTLEHMRRLNIVPDL 327

Query:   419 VTIGILYDA---RRIGFDGTGALE-MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEE 474
             VT G + DA   +R+  +    LE ++ R+  L  +  + TDPL   V GKG F    E 
Sbjct:   328 VTFGCVVDAYMDKRLARN----LEFVYNRMN-LDDSPLVLTDPLAFEVLGKGDFHLSSEA 382

Query:   475 VYSSLEPYSREKKRWTYQNLIDLVIK 500
             V   LE +S  +K WTY+ LI + +K
Sbjct:   383 V---LE-FS-PRKNWTYRKLIGVYLK 403

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 79/345 (22%), Positives = 144/345 (41%)

Query:   108 AVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEME 166
             A++     S R ++  +V  +M  N     I  +NS  +I     +G+++EA+    +M 
Sbjct:   319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS--LISAYARDGMLDEAMELKNQMA 376

Query:   167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD 226
                 KP +  Y +++ G+ + GK   A+    EM+     P   T++  I+ YG    + 
Sbjct:   377 EKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFT 436

Query:   227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL 286
             E+      + + G SPD +T+N L+  F   G+   + G +K M          T   ++
Sbjct:   437 EMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496

Query:   287 DAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS-RI 344
              AY   G  ++    Y+R+L++  TP        LA +  +  M+ + + +  ++   R 
Sbjct:   497 SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL-ARGGMWEQSEKVLAEMEDGRC 555

Query:   345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV 404
                EL +C  L ++A       + S+  E+ S  +         ++L   K         
Sbjct:   556 KPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAER 615

Query:   405 LLSELPTRHVKPDIVTIGIL---YDARRIGFDGTGALEMWKRIGF 446
               SEL  R   PDI T+  +   Y  R++     G L+  K  GF
Sbjct:   616 AFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 80/363 (22%), Positives = 154/363 (42%)

Query:   128 MWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS 185
             +++ I +S   IN +    ++  LC++G ME+      +++   + P +  YN++I  YS
Sbjct:   222 VYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYS 281

Query:   186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI 245
               G   EA   +N M     SP   TY+ +I    K+  Y+        M   G SPD  
Sbjct:   282 SKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 341

Query:   246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL 305
             TY  L+ E    G +   E  +  M ++ +        +++  +   G LDK   ++  +
Sbjct:   342 TYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 401

Query:   306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHR 365
               +       +   L + Y +  M S   +L +++  +    ++V    +L   C     
Sbjct:   402 KEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461

Query:   366 G-IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL 424
             G  D +  EM    +  +  T  I++  + K+ + ++   L  ++  + ++ D+VT   L
Sbjct:   462 GEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521

Query:   425 YDA-RRIGFDGTGALEMWK-RIGFLFKTVEINTDPLVLAVYGKGHF---LRYCEEVYS-S 478
              D   ++G D   A E+W   +        I+   LV A+  KGH     R  +E+ S +
Sbjct:   522 LDGFGKVG-DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKN 580

Query:   479 LEP 481
             ++P
Sbjct:   581 IKP 583

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 66/305 (21%), Positives = 142/305 (46%)

Query:   101 WTKDHFWAVIR-FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAV 159
             W++D F  +++ F     +   +    +M K   +S    +N+  ++    +   +EE  
Sbjct:   342 WSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNT--LMDAYNKSNHIEEVE 399

Query:   160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY 219
               F EM    LKPS   YN ++  Y++  + +     L EM+++ L P   +Y  LI AY
Sbjct:   400 GLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAY 459

Query:   220 GKYKMYDEI--DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL 277
             G+ K   ++  D  L+M K+ G  P   +Y  LI  ++ +G  ++   +++ M  + +  
Sbjct:   460 GRTKKMSDMAADAFLRMKKV-GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKP 518

Query:   278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG 337
                T  ++LDA+   G   K+ + +K +L  +          L + + K  ++    D+ 
Sbjct:   519 SVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVV 578

Query:   338 DDLASRIGRTELVWCLRLLSHACLLSHRG--IDSVVREMESAKVRWNVTTANIILLAYLK 395
              +  S++G    V    +L +A     +   +  +++EM +  ++ +  T + ++ A+++
Sbjct:   579 SEF-SKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637

Query:   396 MKDFK 400
             ++DFK
Sbjct:   638 VRDFK 642

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 89/373 (23%), Positives = 160/373 (42%)

Query:    67 LVESYHEHQ--ALNALIQRL--NKKVSCPLQILQH---DGDWTKDHFWAVIRFLKNSSRS 119
             +VE  H+     LNAL+  L  N KVS  + ++      G    +  +  +  LK   +S
Sbjct:   168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPV--LKVMCKS 225

Query:   120 RQIPQVFDMWKNIEKSRINEFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI 176
              Q     ++ + +E+ +I + ++ K   II  LC++G ++ A   F EME    K  + I
Sbjct:   226 GQTALAMELLRKMEERKI-KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIII 284

Query:   177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK 236
             Y ++I G+   G++++    L +M +  ++P    +  LI  + K     E +   K M 
Sbjct:   285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMI 344

Query:   237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD 296
               G SPD +TY  LI  F     L +       M++K       T   +++ Y    ++D
Sbjct:   345 QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLID 404

Query:   297 K-MEKFYKRLLNSRTPLKEDLV--RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL 353
               +E F K  L     +  D V    L + + +        +L  ++ SR  R ++V   
Sbjct:   405 DGLELFRKMSLRG---VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYK 461

Query:   354 RLLSHACLLSH--RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT 411
              LL   C      + ++ +  ++E +K+  ++   NII+              L   LP 
Sbjct:   462 ILLDGLCDNGEPEKALE-IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520

Query:   412 RHVKPDIVTIGIL 424
             + VKPD+ T  I+
Sbjct:   521 KGVKPDVKTYNIM 533

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039558 AT2G26790 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 5.0e-14, P = 5.0e-14
 Identities = 71/282 (25%), Positives = 132/282 (46%)

Query:   149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ 208
             L + G +EEA    QEM+   + P +  Y ++I GY   GK  +AL  ++EM    +SP 
Sbjct:   398 LSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPD 457

Query:   209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK 268
               TY+ L+    +    +E+    + MK +G  P+ +T +++I+    A  +K  E  + 
Sbjct:   458 LITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFS 517

Query:   269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKN 327
             S+  K    ++S     +  Y   G+    +K YK  +    PL++ +  KL   + I+ 
Sbjct:   518 SLEQKCPENKAS----FVKGYCEAGL---SKKAYKAFVRLEYPLRKSVYIKLFFSLCIEG 570

Query:   328 YMFSRLDDLGDDLASRI--GRTELVWCLRLLSHACLLSH-RGIDSVVREMESAKVRWNVT 384
             Y+    D L    A R+  GR+    C +++   C L++ R    +   M    +  ++ 
Sbjct:   571 YLEKAHDVLKKMSAYRVEPGRS---MCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLF 627

Query:   385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD 426
             T  I++  Y ++ + +    L  ++  R +KPD+VT  +L D
Sbjct:   628 TYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 80/320 (25%), Positives = 141/320 (44%)

Query:   138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFL 197
             ++F  + +I  LC EG    A+  F E  G  +KP++ +YN++I G S  G   EA    
Sbjct:   355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLA 414

Query:   198 NEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA 257
             NEM E  L P+  T++ L+    K     + D  +K+M   G  PD  T+N+LI  ++  
Sbjct:   415 NEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQ 474

Query:   258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV 317
               ++        ML   +     T  ++L+        + + + YK ++           
Sbjct:   475 LKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTF 534

Query:   318 RKLAEVYIKNYMFSRLDD-LG--DDLASRIGRTELVWCLRLLSHACLLSHR-GIDSVVRE 373
               L E   +   + +LD+ LG  +++ ++    + V    L+   C      G  ++ R+
Sbjct:   535 NILLESLCR---YRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591

Query:   374 MESA-KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF 432
             ME A KV  +  T NII+ A+ +  +      L  E+  R + PD  T  ++ D    GF
Sbjct:   592 MEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVD----GF 647

Query:   433 DGTGALEMWKRIGFLFKTVE 452
               TG + +  +  FL + +E
Sbjct:   648 CKTGNVNLGYK--FLLEMME 665

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 105/437 (24%), Positives = 175/437 (40%)

Query:    76 ALNALIQRLNK--KVSCPLQILQHDGDW-TKDHFW---AVIRFLKNSSRSRQIPQVFDMW 129
             A+++L++ L K  K+   L +++   D+    + +   A+I  L    +  +   +FD  
Sbjct:   334 AVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM 393

Query:   130 KNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK 189
               I   R N+     +I M C  G ++ A+    EM    LK S+  YNS+I+G+ K G 
Sbjct:   394 GKIGL-RPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGD 452

Query:   190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYN 248
              + A  F+ EM    L P   TY  L+  Y  K K+   + +  +M    G +P   T+ 
Sbjct:   453 ISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG-KGIAPSIYTFT 511

Query:   249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS 308
              L+     AGL++     +  M    +     T   +++ Y   G + K  +F K +   
Sbjct:   512 TLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK 571

Query:   309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL-VWCLRLLSHACLLSHRGI 367
                      R L          S      D L    G  EL   C   L H      +  
Sbjct:   572 GIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK--GNCELNEICYTGLLHGFCREGKLE 629

Query:   368 D--SVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY 425
             +  SV +EM    V  ++    +++   LK KD K    LL E+  R +KPD V    + 
Sbjct:   630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689

Query:   426 DARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG--KGHFLRYCEEVYSSLEPYS 483
             DA+    D   A  +W  +  + +    N       + G  K  F+   E + S ++P S
Sbjct:   690 DAKSKTGDFKEAFGIWDLM--INEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVS 747

Query:   484 REKKRWTYQNLIDLVIK 500
                 + TY   +D++ K
Sbjct:   748 SVPNQVTYGCFLDILTK 764

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 90/350 (25%), Positives = 159/350 (45%)

Query:   106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKS-RINEFNSQKIIGMLCEEGLMEEAVRAFQE 164
             F  +IR L +SS      ++FD     EK  + NEF    ++   C+ GL ++ +     
Sbjct:   150 FNLLIRALCDSSCVDAARELFDEMP--EKGCKPNEFTFGILVRGYCKAGLTDKGLELLNA 207

Query:   165 MEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
             ME F + P+  IYN+I+  + + G+ +++   + +M+E  L P   T++  I A  K   
Sbjct:   208 MESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGK 267

Query:   225 YDEIDMCLKMMKLD---GCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSS 280
               +       M+LD   G   P+ ITYNL+++ F   GLL+  +  ++S       +R +
Sbjct:   268 VLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES-------IREN 320

Query:   281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYIKNYMFSRLDDLG-- 337
               +A L +Y N  +   +   + + + + T LK+   + +   +Y  N +   L  LG  
Sbjct:   321 DDLASLQSY-NIWLQGLVR--HGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGML 377

Query:   338 DDLASRIGRTELVW-CLRLLSHACLL----SHRGID---SVVREMESAKVRWNVTTANII 389
              D  + +G  +    C   +++ CLL    S   +D   S+++EM       N  T NI+
Sbjct:   378 SDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNIL 437

Query:   390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE 439
             L +  KM        LL ++  +    D VT  I+ D    G  G+G L+
Sbjct:   438 LHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVD----GLCGSGELD 483

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23278	PP310_ARATH	No assigned EC number	0.5550	0.9098	0.9261	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-05
pfam01535	31	pfam01535, PPR, PPR repeat	7e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           P +  YN++I GY K GK  EAL   NEMK+  + P   TY  LI    K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN 204
           ++G        ++A+  +++++   L+P++   N++I    +  +  +AL  L+EMK + 
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749

Query: 205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI----QEF--ACAG 258
           L P + TY  L+ A  +    D     L   K DG  P+ +    +     + F  ACA 
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK 186
           +N+  +I   C++G +EEA++ F EM+   +KP++  Y+ +I G  K
Sbjct: 6   YNT--LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP 207
            YN++I G  K G+  EAL    EMKE  + P
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS 209
              G ++ A   +Q +  + +K + E+Y   ++  S+ G ++ AL   ++MK+  + P  
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649

Query: 210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS 269
             +  L+   G     D+    L+  +  G     ++Y+ L+   + A   K+    Y+ 
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709

Query: 270 MLTKRMHLRS--STMVAILDA 288
           +  K + LR   STM A++ A
Sbjct: 710 I--KSIKLRPTVSTMNALITA 728

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNL 205
            YNS+I GY K GK  EAL    EMKE  +
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 162 FQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK 221
           F EM    ++ ++  + ++I G ++ G+  +A      M+  N+ P    ++ LI A G+
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 222 YKMYDEIDMCLKMMKLDG--CSPDHITYNLLIQEFACAGLLKRMEGTYKSM 270
               D     L  MK +     PDHIT   L++  A AG + R +  Y+ +
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 11/161 (6%)

Query: 147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS 206
            +L +E L  E +  +    GFA+  S  + NS+I  Y  +G + EA    + M+  +  
Sbjct: 299 ELLGDERLGRE-MHGYVVKTGFAVDVS--VCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

Query: 207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT 266
               ++  +I  Y K  + D+      +M+ D  SPD IT   ++   AC G L    G 
Sbjct: 356 ----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV--GV 409

Query: 267 YKSMLTKRMHLRSSTMVA--ILDAYMNFGMLDKMEKFYKRL 305
               L +R  L S  +VA  +++ Y     +DK  + +  +
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.7 bits (89), Expect = 3e-04
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK 201
           LKP +  YN++I G  + G+ +EA+  L+EM+
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD 243
           TY+ LI    K    +E     K MK  G  PD
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.84
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.8
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.8
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.76
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.74
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.74
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.68
PRK14574	822	hmsH outer membrane protein; Provisional	99.67
PRK14574	822	hmsH outer membrane protein; Provisional	99.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.57
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.57
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.53
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.5
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.5
PF13041	50	PPR_2: PPR repeat family	99.47
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.45
KOG2076	895	consensus RNA polymerase III transcription factor	99.45
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.44
KOG2003	840	consensus TPR repeat-containing protein [General f	99.43
PF13041	50	PPR_2: PPR repeat family	99.43
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.42
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.36
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.33
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
KOG1126	638	consensus DNA-binding cell division cycle control	99.32
KOG1126	638	consensus DNA-binding cell division cycle control	99.32
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.29
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.28
KOG2076	895	consensus RNA polymerase III transcription factor	99.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.28
KOG2003	840	consensus TPR repeat-containing protein [General f	99.28
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.25
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.25
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.24
PRK12370	553	invasion protein regulator; Provisional	99.24
PRK12370	553	invasion protein regulator; Provisional	99.24
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.24
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.14
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.05
KOG1129	478	consensus TPR repeat-containing protein [General f	99.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.02
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.0
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.99
KOG1129	478	consensus TPR repeat-containing protein [General f	98.96
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.93
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.92
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.9
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.89
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.87
PRK11189	296	lipoprotein NlpI; Provisional	98.87
PF12854	34	PPR_1: PPR repeat	98.86
PF12854	34	PPR_1: PPR repeat	98.86
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.83
PRK11189	296	lipoprotein NlpI; Provisional	98.82
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.8
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.73
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.72
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.71
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.65
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.63
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.59
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.57
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.57
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.57
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.5
PLN02789	320	farnesyltranstransferase	98.49
PRK04841	903	transcriptional regulator MalT; Provisional	98.47
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.46
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.42
PRK04841	903	transcriptional regulator MalT; Provisional	98.4
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.39
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.39
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.37
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.35
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.33
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.32
PLN02789	320	farnesyltranstransferase	98.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.31
KOG1125	579	consensus TPR repeat-containing protein [General f	98.28
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.28
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.24
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.22
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.22
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.22
KOG1125	579	consensus TPR repeat-containing protein [General f	98.19
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.17
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.16
PRK15359	144	type III secretion system chaperone protein SscB;	98.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.15
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.12
PRK15359	144	type III secretion system chaperone protein SscB;	98.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.09
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.07
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.02
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.98
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.97
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.96
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.93
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.92
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.92
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.91
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.91
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.9
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.9
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.87
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.87
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.85
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.85
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.84
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.84
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.82
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.82
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.77
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.77
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.61
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.61
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.57
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.56
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.52
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.46
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.46
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.43
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.4
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.38
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.27
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.26
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.23
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.18
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.14
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.01
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.97
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.94
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.94
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.94
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.89
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.84
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.79
PF12688	120	TPR_5: Tetratrico peptide repeat	96.78
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.71
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.71
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.69
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.68
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.67
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.64
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.62
PF12688	120	TPR_5: Tetratrico peptide repeat	96.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.58
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.48
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.46
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.33
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.33
KOG3941	406	consensus Intermediate in Toll signal transduction	96.33
KOG3941	406	consensus Intermediate in Toll signal transduction	96.21
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.21
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.18
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.18
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.06
KOG0553	304	consensus TPR repeat-containing protein [General f	96.04
PRK10803	263	tol-pal system protein YbgF; Provisional	95.92
KOG0553	304	consensus TPR repeat-containing protein [General f	95.84
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.84
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.8
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.74
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.74
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.61
PRK10803	263	tol-pal system protein YbgF; Provisional	95.59
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.58
PF13371	73	TPR_9: Tetratricopeptide repeat	95.49
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.46
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.4
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.35
PF13371	73	TPR_9: Tetratricopeptide repeat	95.3
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.26
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.13
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.7
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.69
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.62
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.42
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.33
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.22
PRK15331	165	chaperone protein SicA; Provisional	94.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.04
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.94
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.83
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.72
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.54
PRK15331	165	chaperone protein SicA; Provisional	93.48
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.42
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.35
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.34
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.01
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.99
KOG2041	1189	consensus WD40 repeat protein [General function pr	92.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.96
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.73
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.72
KOG4555	175	consensus TPR repeat-containing protein [Function	92.5
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.4
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	92.22
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.08
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.99
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	91.93
COG4700	251	Uncharacterized protein conserved in bacteria cont	91.86
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.33
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.32
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.12
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.87
PRK11906	458	transcriptional regulator; Provisional	90.73
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.64
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	90.61
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.46
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.39
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.11
PF13428	44	TPR_14: Tetratricopeptide repeat	89.95
PRK11906	458	transcriptional regulator; Provisional	89.85
PF13512	142	TPR_18: Tetratricopeptide repeat	89.7
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.03
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	88.65
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.53
PF13512	142	TPR_18: Tetratricopeptide repeat	88.35
PF13428	44	TPR_14: Tetratricopeptide repeat	88.33
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	88.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	88.09
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.02
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	87.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	87.88
PF13762	145	MNE1: Mitochondrial splicing apparatus component	87.78
PF13929	292	mRNA_stabil: mRNA stabilisation	87.77
KOG2610	491	consensus Uncharacterized conserved protein [Funct	87.73
COG3947	361	Response regulator containing CheY-like receiver a	87.64
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	87.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	87.04
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.66
PF13762	145	MNE1: Mitochondrial splicing apparatus component	86.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.56
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.49
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	86.42
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.15
PF13929	292	mRNA_stabil: mRNA stabilisation	86.1
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	85.89
KOG1941	518	consensus Acetylcholine receptor-associated protei	85.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	85.25
KOG4555	175	consensus TPR repeat-containing protein [Function	85.11
COG3118	304	Thioredoxin domain-containing protein [Posttransla	84.25
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	84.12
PHA02875	413	ankyrin repeat protein; Provisional	84.02
COG0457	291	NrfG FOG: TPR repeat [General function prediction	83.97
KOG1258	577	consensus mRNA processing protein [RNA processing	83.86
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	83.83
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	83.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	83.09
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.84
PF13431	34	TPR_17: Tetratricopeptide repeat	82.82
PHA02875	413	ankyrin repeat protein; Provisional	82.32
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.2
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	81.79
KOG1585	308	consensus Protein required for fusion of vesicles	81.67
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	81.66
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.84
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	80.4
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	80.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.04

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.2e-68  Score=564.87  Aligned_cols=463  Identities=14%  Similarity=0.138  Sum_probs=393.5

Q ss_pred             cchHHHHHHhhhccccccccCCCccccccchh----------hhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCC
Q 010459           31 HDRVFFAKTLIRKPISCCCLSSAPSLDYHSTK----------HTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGD  100 (510)
Q Consensus        31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  100 (510)
                      +++......+++.+.++|.+.++..+ |+.|.          .++.++.+|.+.+.+.++++.+.       .|.    .
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~L-fd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-------~M~----~  434 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDL-LEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-------LIR----N  434 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-------HcC----C
Confidence            34456666778888888888888877 65552          23456667888888888887665       332    3


Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      ||..+|+.+|++|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+.|+.||..+|++|
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL  513 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL  513 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            8888999999999999999999999998887 888899999999999999999999999999999988888999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcC
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL--DGCSPDHITYNLLIQEFACAG  258 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g  258 (510)
                      |.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|..  .|+.||.++|++||.+|++.|
T Consensus       514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G  593 (1060)
T PLN03218        514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG  593 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence            999999999999999999998889999999999999999999999999999999876  578889999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHH
Q 010459          259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD  338 (510)
Q Consensus       259 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  338 (510)
                      ++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++|+++|++.|++++|.+++.
T Consensus       594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~  673 (1060)
T PLN03218        594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ  673 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999998898899999999999999999999999999999988999999999999999999999999998888


Q ss_pred             HHHhhc-CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC
Q 010459          339 DLASRI-GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD  417 (510)
Q Consensus       339 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  417 (510)
                      .+.... .++..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus       674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd  753 (1060)
T PLN03218        674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN  753 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            887554 5778889999999999999999999999998888889999999999999999999999999999988889999


Q ss_pred             HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhh----ccC-------------------chhHHHH
Q 010459          418 IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG----KGH-------------------FLRYCEE  474 (510)
Q Consensus       418 ~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-------------------~~~~A~~  474 (510)
                      ..||++++.+|++.|++++|.+++++|...+..|+..++++++++|.    +++                   ..+.|..
T Consensus       754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~  833 (1060)
T PLN03218        754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM  833 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence            99999999999999999999999999988888888888888887643    222                   2356888


Q ss_pred             HHhhcCCCCCCCCcccHHHHHHHHHhcCCCCC
Q 010459          475 VYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL  506 (510)
Q Consensus       475 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  506 (510)
                      +|++|.+.|+.||..||+.+|.++++.+..++
T Consensus       834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~  865 (1060)
T PLN03218        834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATL  865 (1060)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhcccccHHH
Confidence            88999988999999999988877766665543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.1e-68  Score=559.49  Aligned_cols=472  Identities=16%  Similarity=0.109  Sum_probs=441.6

Q ss_pred             eeccccccccCcchHHHHHHhhhccccccccCCCccccc-----cchhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhh
Q 010459           20 RLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDY-----HSTKHTTLLVESYHEHQALNALIQRLNKKVSCPLQI   94 (510)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   94 (510)
                      ++....+.+..++.....+.+++.+.+.|....+..+ |     ++..+|+.++.+|++.+.++.+++.+.       .|
T Consensus       392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~l-f~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~-------~M  463 (1060)
T PLN03218        392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF-AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR-------LV  463 (1060)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHH-HHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH-------HH
Confidence            3344455555667777778888888888887777654 4     455789999999999999999999998       99


Q ss_pred             hhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010459           95 LQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL  174 (510)
Q Consensus        95 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~  174 (510)
                      .+.|..||..+|+++|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||.
T Consensus       464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~  542 (1060)
T PLN03218        464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR  542 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence            9999999999999999999999999999999999998 899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKE--MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      .+||.||.+|++.|++++|.++|++|..  .|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..+|+++|.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~  622 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN  622 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            9999999999999999999999999976  68999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH
Q 010459          253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR  332 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  332 (510)
                      +|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++|++|.+.|+.|+..+|++||.+|+++|++++
T Consensus       623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee  702 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK  702 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-cCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          333 LDDLGDDLASR-IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       333 a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      |.+++..+... ..++..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+
T Consensus       703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999988744 57889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhhhh----c-------------------CccchHHHHHHHcCCccccccccChhHHHHHhhccCc
Q 010459          412 RHVKPDIVTIGILYDARRI----G-------------------FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHF  468 (510)
Q Consensus       412 ~g~~p~~~t~~~li~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  468 (510)
                      .|+.||..+|++++..|.+    .                   +..++|+.+|++|...+..|+..+|+.++..+.+.+.
T Consensus       783 ~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~  862 (1060)
T PLN03218        783 DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD  862 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence            9999999999999976542    1                   1236799999999999999999999999988889999


Q ss_pred             hhHHHHHHhhcCCCCCCCCcccHHHHHHHHHh
Q 010459          469 LRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK  500 (510)
Q Consensus       469 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  500 (510)
                      .+.+.++++.|...+..|+..+|++||+++.+
T Consensus       863 ~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~  894 (1060)
T PLN03218        863 ATLRNRLIENLGISADSQKQSNLSTLVDGFGE  894 (1060)
T ss_pred             HHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence            99999999999998999999999999999854

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.4e-68  Score=570.96  Aligned_cols=459  Identities=16%  Similarity=0.122  Sum_probs=364.9

Q ss_pred             cCcchHHHHHHhhhccccccccCCCccccccch-----hhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCCh
Q 010459           29 LTHDRVFFAKTLIRKPISCCCLSSAPSLDYHST-----KHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTK  103 (510)
Q Consensus        29 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  103 (510)
                      ...+.+.+.|+||++|.+||....+..+ |+.|     ++||.+|.+|++.|.++++++.|.       .|...|..||.
T Consensus       116 ~~~~~~~~~n~li~~~~~~g~~~~A~~~-f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~-------~M~~~g~~Pd~  187 (857)
T PLN03077        116 HPSLGVRLGNAMLSMFVRFGELVHAWYV-FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYH-------RMLWAGVRPDV  187 (857)
T ss_pred             CCCCCchHHHHHHHHHHhCCChHHHHHH-HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHH-------HHHHcCCCCCh
Confidence            3456778899999999999999999887 7555     679999999999999999999888       55555555555


Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCC-------------------------------CHHHHHHHHHHHHhc
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-------------------------------NEFNSQKIIGMLCEE  152 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------------------------~~~~~~~li~~~~~~  152 (510)
                      .||+++|++|++.++++.+.+++..|.+ .|+.|                               |..+||++|.+|++.
T Consensus       188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~  266 (857)
T PLN03077        188 YTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN  266 (857)
T ss_pred             hHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhC
Confidence            5555555544444444444444444444 44444                               555555555555555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010459          153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCL  232 (510)
Q Consensus       153 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~  232 (510)
                      |++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|
T Consensus       267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf  346 (857)
T PLN03077        267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF  346 (857)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence            55555555555555555666666666666666666666666666666666666677777788888888888888888888


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 010459          233 KMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL  312 (510)
Q Consensus       233 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~  312 (510)
                      ++|.    .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|
T Consensus       347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  422 (857)
T PLN03077        347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS  422 (857)
T ss_pred             hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence            8887    688899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcC----------
Q 010459          313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN----------  382 (510)
Q Consensus       313 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------  382 (510)
                      +..++++||++|+++|++++|.+++..+   ..++.++|+++|.+|...|+.++|.++|++|.. ++.||          
T Consensus       423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a  498 (857)
T PLN03077        423 YVVVANALIEMYSKCKCIDKALEVFHNI---PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA  498 (857)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence            9999999999999999999999997655   567899999999999999999999999999975 35554          


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHHcCCChhHHHHHHH
Q 010459          383 -------------------------------------------------------VTTANIILLAYLKMKDFKHLRVLLS  407 (510)
Q Consensus       383 -------------------------------------------------------~~~~~~li~~~~~~g~~~~A~~~~~  407 (510)
                                                                             ..+||+||.+|++.|+.++|.++|+
T Consensus       499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~  578 (857)
T PLN03077        499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN  578 (857)
T ss_pred             HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence                                                                   4557777777888888888888888


Q ss_pred             hhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcC-CccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCC
Q 010459          408 ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG-FLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREK  486 (510)
Q Consensus       408 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  486 (510)
                      +|.+.|+.||..||++++.+|++.|.+++|.++|++|. ..+..|+..+|++++++|++.|++++|.+++++|.   ++|
T Consensus       579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~p  655 (857)
T PLN03077        579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITP  655 (857)
T ss_pred             HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCC
Confidence            88888888888888888888888888888888888886 66777888888888888888888888888888885   678


Q ss_pred             CcccHHHHHHHHHhcCCCCCC
Q 010459          487 KRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       487 ~~~~~~~li~~~~~~g~~~~a  507 (510)
                      |..+|++|+.+|..+|+.+++
T Consensus       656 d~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        656 DPAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             CHHHHHHHHHHHHHcCChHHH
Confidence            888888888888888877654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.3e-67  Score=561.15  Aligned_cols=460  Identities=15%  Similarity=0.075  Sum_probs=401.8

Q ss_pred             cccccCcchHHHHHHhhhccccccccCCCccccccch-----hhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccC
Q 010459           25 KKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHST-----KHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDG   99 (510)
Q Consensus        25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   99 (510)
                      +.+.+..+.++..|+||++|.+||....|..+ |+.|     ++||++|.+|++.|.+.+++..|.       .|...|.
T Consensus       213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l-f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~-------~M~~~g~  284 (857)
T PLN03077        213 VVRFGFELDVDVVNALITMYVKCGDVVSARLV-FDRMPRRDCISWNAMISGYFENGECLEGLELFF-------TMRELSV  284 (857)
T ss_pred             HHHcCCCcccchHhHHHHHHhcCCCHHHHHHH-HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHH-------HHHHcCC
Confidence            34446677888999999999999999999887 7544     689999999999999999999999       8999999


Q ss_pred             CCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNS  179 (510)
Q Consensus       100 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  179 (510)
                      .||..||+++|.+|++.|+.+.|.+++..|.+ .|+.||..+||+||.+|+++|++++|.++|++|.    .||.++||+
T Consensus       285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~  359 (857)
T PLN03077        285 DPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA  359 (857)
T ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence            99999999999999999999999999999988 8999999999999999999999999999999987    688888999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----------------
Q 010459          180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP-----------------  242 (510)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----------------  242 (510)
                      ||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++++.|.+.|+.|                 
T Consensus       360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~  439 (857)
T PLN03077        360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC  439 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence            999999999999999999988888888887777666666555555555555555555555544                 


Q ss_pred             --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          243 --------------DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       243 --------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                                    |.++||++|.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.+.+++..+.+.
T Consensus       440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~  518 (857)
T PLN03077        440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT  518 (857)
T ss_pred             HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence                          445555555555555555555566666654 58899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHH
Q 010459          309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI  388 (510)
Q Consensus       309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  388 (510)
                      |+.+|..++++||++|+++|++++|.+++..+    .++..+||++|.+|+.+|+.++|.++|++|.+.|+.||..||++
T Consensus       519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~  594 (857)
T PLN03077        519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS  594 (857)
T ss_pred             CCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence            99999999999999999999999999997665    78999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCChhHHHHHHHhhh-hCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccC
Q 010459          389 ILLAYLKMKDFKHLRVLLSELP-TRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH  467 (510)
Q Consensus       389 li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  467 (510)
                      +|.+|++.|++++|.++|++|. +.|+.|+..||+++++++++.|++++|.+++++|.   ..|+..+|++++.+|..+|
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~  671 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHR  671 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999 78999999999999999999999999999999995   4588999999999999999


Q ss_pred             chhHHHHHHhhcCCCCCCCC-cccHHHHHHHHHhcCCCCCC
Q 010459          468 FLRYCEEVYSSLEPYSREKK-RWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       468 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a  507 (510)
                      +.+.++.+.+++.+  ++|+ ...|..|.+.|+..|+|+.|
T Consensus       672 ~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a  710 (857)
T PLN03077        672 HVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV  710 (857)
T ss_pred             ChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence            99999999988887  4555 45677788999999999865

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.1e-65  Score=536.91  Aligned_cols=424  Identities=14%  Similarity=0.128  Sum_probs=389.3

Q ss_pred             hhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhcc-CCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH
Q 010459           61 TKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHD-GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE  139 (510)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  139 (510)
                      ..+|+.+|.+|.+.|++.++++.|.       .|...+ ..||..+|++++.+|++.++++.|.+++..|.+ .|+.||.
T Consensus        87 ~~~~~~~i~~l~~~g~~~~Al~~f~-------~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~  158 (697)
T PLN03081         87 GVSLCSQIEKLVACGRHREALELFE-------ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQ  158 (697)
T ss_pred             ceeHHHHHHHHHcCCCHHHHHHHHH-------HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcch
Confidence            3478999999999999999999887       565543 568888999999999999999999999998887 7888999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD---------  210 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---------  210 (510)
                      .+||.||.+|+++|++++|.++|++|.    .||.++||+||.+|++.|++++|+++|++|.+.|+.||..         
T Consensus       159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~  234 (697)
T PLN03081        159 YMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS  234 (697)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence            999999999999999999999999997    6889999999999999999999999999987777666554         


Q ss_pred             --------------------------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459          211 --------------------------TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       211 --------------------------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  264 (510)
                                                +||+||++|+++|++++|.++|++|.    ++|.++||+||.+|++.|++++|+
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~  310 (697)
T PLN03081        235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEAL  310 (697)
T ss_pred             hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHH
Confidence                                      45788999999999999999999998    789999999999999999999999


Q ss_pred             HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459          265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI  344 (510)
Q Consensus       265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  344 (510)
                      ++|++|.+.|+.||..||++++++|++.|++++|.++|..|.+.|+.||..++++|+++|+++|++++|.++|..+   .
T Consensus       311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m---~  387 (697)
T PLN03081        311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM---P  387 (697)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC---C
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999997665   4


Q ss_pred             CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh-CCCCCCHHHHHH
Q 010459          345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT-RHVKPDIVTIGI  423 (510)
Q Consensus       345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~  423 (510)
                      .++..+||+||.+|+++|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++
T Consensus       388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~  467 (697)
T PLN03081        388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC  467 (697)
T ss_pred             CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence            5799999999999999999999999999999999999999999999999999999999999999985 799999999999


Q ss_pred             HHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCC-cccHHHHHHHHHhcC
Q 010459          424 LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKK-RWTYQNLIDLVIKHN  502 (510)
Q Consensus       424 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g  502 (510)
                      +++++++.|++++|.+++++|..   .|+..+|+.++.+|.+.|+++.|+++++++.+  ..|+ ..+|+.|++.|++.|
T Consensus       468 li~~l~r~G~~~eA~~~~~~~~~---~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G  542 (697)
T PLN03081        468 MIELLGREGLLDEAYAMIRRAPF---KPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSG  542 (697)
T ss_pred             HHHHHHhcCCHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCC
Confidence            99999999999999999999854   48888999999999999999999999999976  5664 679999999999999


Q ss_pred             CCCCCC
Q 010459          503 GKNLDG  508 (510)
Q Consensus       503 ~~~~a~  508 (510)
                      +++.|.
T Consensus       543 ~~~~A~  548 (697)
T PLN03081        543 RQAEAA  548 (697)
T ss_pred             CHHHHH
Confidence            998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=6.2e-59  Score=488.09  Aligned_cols=443  Identities=11%  Similarity=0.067  Sum_probs=394.2

Q ss_pred             eeccccccccCcchHHHHHHhhhccccccccCCCcccc--------ccchhhhhHHHHHhhhhhHHHHHHHHHcccCCCc
Q 010459           20 RLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLD--------YHSTKHTTLLVESYHEHQALNALIQRLNKKVSCP   91 (510)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   91 (510)
                      ++..+.......+..+..+.+++.+.+.+....+..+.        .++..+|+.+++.|++.|.++.+.+.|++     
T Consensus       109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~-----  183 (697)
T PLN03081        109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE-----  183 (697)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc-----
Confidence            33444444445567777788999988887776554330        14556789999999999999999988873     


Q ss_pred             hhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010459           92 LQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK  171 (510)
Q Consensus        92 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  171 (510)
                        |    ..||..+||++|.+|++.|++++|.++|+.|.+ .|..||..+|+.++.+|++.|+.+.+.+++..+.+.|+.
T Consensus       184 --m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~  256 (697)
T PLN03081        184 --M----PERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV  256 (697)
T ss_pred             --C----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence              3    357889999999999999999999999999988 899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI  251 (510)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  251 (510)
                      ||..+||+||++|++.|++++|.++|++|.    .+|.++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll  332 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI  332 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            999999999999999999999999999995    4688999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchh
Q 010459          252 QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFS  331 (510)
Q Consensus       252 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  331 (510)
                      .+|++.|++++|.+++.+|.+.|+.||..+|++||++|++.|++++|.++|++|.    .||..+||+||.+|++.|+.+
T Consensus       333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~  408 (697)
T PLN03081        333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGT  408 (697)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999999999999885    378899999999999999999


Q ss_pred             HHHHHHHHHHh-hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH-CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459          332 RLDDLGDDLAS-RIGRTELVWCLRLLSHACLLSHRGIDSVVREMES-AKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL  409 (510)
Q Consensus       332 ~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  409 (510)
                      +|.++++++.. ...++..+|++++.+|...|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus       409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~  488 (697)
T PLN03081        409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA  488 (697)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence            99999998874 4578899999999999999999999999999986 699999999999999999999999999999877


Q ss_pred             hhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCC
Q 010459          410 PTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREK  486 (510)
Q Consensus       410 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  486 (510)
                         ++.|+..+|++|+.+|...|+.+.|.+.++++.... +.+...|..++++|++.|++++|.++++.|.+.|+.+
T Consensus       489 ---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k  561 (697)
T PLN03081        489 ---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM  561 (697)
T ss_pred             ---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence               478999999999999999999999999999885432 2356789999999999999999999999999988753

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=5.5e-24  Score=232.73  Aligned_cols=391  Identities=12%  Similarity=0.001  Sum_probs=249.4

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      .+..+...+...|++++|.+.++.+..  ..+.+..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...|
T Consensus       501 ~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  577 (899)
T TIGR02917       501 AAANLARIDIQEGNPDDAIQRFEKVLT--IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY  577 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence            444455555555555555555555543  223344555555556666666666666666555443 23445555566666


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  264 (510)
                      .+.|++++|.++++.+.+.. ..+..+|..+...|.+.|++++|...|+++.+.. +.+...|..+...|.+.|++++|.
T Consensus       578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  655 (899)
T TIGR02917       578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI  655 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666665432 2345566666666666666666666666665543 234555666666666666666666


Q ss_pred             HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459          265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI  344 (510)
Q Consensus       265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  344 (510)
                      ..|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...+.......
T Consensus       656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  733 (899)
T TIGR02917       656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA  733 (899)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            6666665542 2245566666666666666666666666666554 3455556666666667777777777666665544


Q ss_pred             CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHH
Q 010459          345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGIL  424 (510)
Q Consensus       345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  424 (510)
                      +.+ .++..+...+...|+.++|.+.++++.+..+. +...++.+...|.+.|++++|.++|+++.+.. .++...+..+
T Consensus       734 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l  810 (899)
T TIGR02917       734 PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL  810 (899)
T ss_pred             CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            433 55555666677777777777777776665433 66777777777777888888888888877643 3455667777


Q ss_pred             HHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCC
Q 010459          425 YDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGK  504 (510)
Q Consensus       425 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  504 (510)
                      ...+...|+ .+|++.++++.... +.+...+..+...|.+.|++++|.+.++++.+.+.. +..++..+..++.+.|+.
T Consensus       811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~  887 (899)
T TIGR02917       811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK  887 (899)
T ss_pred             HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence            777777777 77888877764332 123334556677788899999999999999985433 778999999999999998


Q ss_pred             CCCC
Q 010459          505 NLDG  508 (510)
Q Consensus       505 ~~a~  508 (510)
                      +.|.
T Consensus       888 ~~A~  891 (899)
T TIGR02917       888 AEAR  891 (899)
T ss_pred             HHHH
Confidence            8763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=9.9e-24  Score=230.71  Aligned_cols=384  Identities=11%  Similarity=0.007  Sum_probs=252.5

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI  187 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  187 (510)
                      .++..+.+.|++++|.++++.+..  ..+++..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+...
T Consensus       436 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~  512 (899)
T TIGR02917       436 LLILSYLRSGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE  512 (899)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC
Confidence            344445555555555555555542  334455566666666666666666666666665543 22445566666666666


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459          188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY  267 (510)
Q Consensus       188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  267 (510)
                      |++++|.+.|+++.+.+. .+..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...|.+.|++++|.+++
T Consensus       513 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  590 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL  590 (899)
T ss_pred             CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence            666666666666655432 255566666666666677777777776665543 345556666677777777777777777


Q ss_pred             HHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459          268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT  347 (510)
Q Consensus       268 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  347 (510)
                      +.+.... +.+..+|..+..++...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...+.......+.+
T Consensus       591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  668 (899)
T TIGR02917       591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN  668 (899)
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            7766543 3355667777777777777777777777776543 3345566677777777777777777777777766777


Q ss_pred             hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459          348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA  427 (510)
Q Consensus       348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~  427 (510)
                      ..+|..+...+...|+.++|.++++.+.+..+. +...+..+...+.+.|++++|.+.|+.+.+.  .|+..++..+..+
T Consensus       669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  745 (899)
T TIGR02917       669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRA  745 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHH
Confidence            777777777777777777777777777766533 5566677777777777788887777777764  3555666667777


Q ss_pred             hhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCC
Q 010459          428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNG  503 (510)
Q Consensus       428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  503 (510)
                      +.+.|+.++|.+.++++... .+.+...+..+...|.+.|+.++|.+.|+++.+. .+++...++.+...+...|+
T Consensus       746 ~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       746 LLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc
Confidence            77777888887777776433 2234445566667777888888888888887764 23455677777777777776

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=5.1e-20  Score=181.54  Aligned_cols=310  Identities=11%  Similarity=0.013  Sum_probs=177.2

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGK  189 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~  189 (510)
                      +...|++++|.+.|..+.+  ..+.+..++..+...|.+.|++++|..+++.+.+.+..++   ...|..+...|.+.|+
T Consensus        45 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            3455666666666666653  1223344566666666666666666666666655321111   2345566666666666


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 010459          190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD----HITYNLLIQEFACAGLLKRMEG  265 (510)
Q Consensus       190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~  265 (510)
                      +++|.++|+++.+.. .++..+++.++..|.+.|++++|.+.++.+.+.+..+.    ...|..+...+.+.|++++|.+
T Consensus       123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            666666666665542 23455666666666666666666666666655432211    1123445555566666666666


Q ss_pred             HHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459          266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG  345 (510)
Q Consensus       266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  345 (510)
                      .|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+                             
T Consensus       202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----------------------------  251 (389)
T PRK11788        202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV-----------------------------  251 (389)
T ss_pred             HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH-----------------------------
Confidence            666665442 11334555555666666666666666666654321111223                             


Q ss_pred             CchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHH
Q 010459          346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY  425 (510)
Q Consensus       346 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li  425 (510)
                           ++.++.+|...|+.++|.+.++++.+..  |+...+..+...+.+.|++++|..+++++.+.  .|+..++..++
T Consensus       252 -----~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~  322 (389)
T PRK11788        252 -----LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL  322 (389)
T ss_pred             -----HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence                 3444444555555566666666666653  44455567777777888888888888777754  57777777777


Q ss_pred             Hhhhh---cCccchHHHHHHHcCCccccccccChhHHHHHhhccCchh
Q 010459          426 DARRI---GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLR  470 (510)
Q Consensus       426 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  470 (510)
                      ..+..   .|+.++++..++++......++..      ..|.+||...
T Consensus       323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~  364 (389)
T PRK11788        323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTA  364 (389)
T ss_pred             HHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCC
Confidence            65443   446777777777775544444443      2366666554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=8.9e-20  Score=179.80  Aligned_cols=277  Identities=13%  Similarity=0.075  Sum_probs=224.4

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN  178 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  178 (510)
                      +..++..+...+...|++++|.++++.+.. .+..++   ...+..+...|.+.|++++|..+|+++.+.. +++..+++
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~  145 (389)
T PRK11788         68 TVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ  145 (389)
T ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence            456788899999999999999999999876 322221   3568889999999999999999999998753 45788999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF  254 (510)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  254 (510)
                      .++..+.+.|++++|.+.++.+.+.+..++.    ..+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...|
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  224 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA  224 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence            9999999999999999999999887644332    245677888899999999999999998764 34567888889999


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459          255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD  334 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  334 (510)
                      .+.|++++|.++|+++.+.+......++..+..+|...|++++|.+.++.+.+..  |+...+..+...+.+.|++++  
T Consensus       225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~--  300 (389)
T PRK11788        225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEA--  300 (389)
T ss_pred             HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHH--
Confidence            9999999999999999976433335678899999999999999999999998764  555556667777777666654  


Q ss_pred             HHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHc---CCChhHHHHHHHhhhh
Q 010459          335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLK---MKDFKHLRVLLSELPT  411 (510)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~  411 (510)
                                                      |..+++++.+.  .|+..+++.++..+..   .|+.++++.++++|.+
T Consensus       301 --------------------------------A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        301 --------------------------------AQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             --------------------------------HHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence                                            45556666554  5788888888887664   5688899999999998


Q ss_pred             CCCCCCHH
Q 010459          412 RHVKPDIV  419 (510)
Q Consensus       412 ~g~~p~~~  419 (510)
                      .++.|++.
T Consensus       347 ~~~~~~p~  354 (389)
T PRK11788        347 EQLKRKPR  354 (389)
T ss_pred             HHHhCCCC
Confidence            88888777

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.84  E-value=9.2e-17  Score=166.58  Aligned_cols=331  Identities=6%  Similarity=-0.119  Sum_probs=268.5

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459          107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK  186 (510)
Q Consensus       107 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  186 (510)
                      --++..+.+.|++++|..+++....  ..+-+...+..+.......|++++|...|+++.+.. +.+...|..+...+.+
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~  122 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK  122 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            3567788899999999999998875  333344455556677778999999999999999874 3356788899999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010459          187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT  266 (510)
Q Consensus       187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  266 (510)
                      .|++++|.+.|++..+... .+...+..+...+...|+.++|...++.+..... .+...+..+ ..+.+.|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence            9999999999999988532 2567888899999999999999999998876542 233344333 348889999999999


Q ss_pred             HHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH----HHHHHHHHHh
Q 010459          267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR----LDDLGDDLAS  342 (510)
Q Consensus       267 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~  342 (510)
                      ++.+.+....++...+..+..++...|++++|.+.++...+.. +.+...+..+...|...|++++    |...++....
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            9998876544455556666788899999999999999998765 4467788889999999999986    7888888888


Q ss_pred             hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHH-
Q 010459          343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTI-  421 (510)
Q Consensus       343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-  421 (510)
                      ..+.+...+..+...+...|+.++|...+++..+..+. +...+..+..+|.+.|++++|...|+.+.+.  .|+...+ 
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~  355 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN  355 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence            88889999999999999999999999999999987554 5667778888999999999999999999864  4665443 


Q ss_pred             HHHHHhhhhcCccchHHHHHHHcCCc
Q 010459          422 GILYDARRIGFDGTGALEMWKRIGFL  447 (510)
Q Consensus       422 ~~li~~~~~~~~~~~a~~~~~~~~~~  447 (510)
                      ..+..++...|+.++|++.+++....
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            33445688899999999999987443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=7.6e-16  Score=159.77  Aligned_cols=331  Identities=9%  Similarity=-0.022  Sum_probs=264.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHH
Q 010459           66 LLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI  145 (510)
Q Consensus        66 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  145 (510)
                      .++-...+.|+..+++..+.       ..+...+.... .+..+..++...|++++|.+.++.+..  -.+.+...+..+
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~-------~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~~a~~~l  116 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLS-------DRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLA--VNVCQPEDVLLV  116 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhH-------HHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence            45566677778777777776       44444444433 344555666779999999999999975  334456778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010459          146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY  225 (510)
Q Consensus       146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  225 (510)
                      ...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.++.+......+ ...+..+ ..+.+.|++
T Consensus       117 a~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~  193 (656)
T PRK15174        117 ASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRL  193 (656)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCH
Confidence            999999999999999999998763 3357889999999999999999999999987754332 3333333 347889999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH----HHHH
Q 010459          226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK----MEKF  301 (510)
Q Consensus       226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~  301 (510)
                      ++|...++.+.+....++...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++    |...
T Consensus       194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~  272 (656)
T PRK15174        194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEH  272 (656)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence            999999999876643344555566678899999999999999999976532 56788889999999999986    8999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459          302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW  381 (510)
Q Consensus       302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  381 (510)
                      ++...+.. +.+...+..+...+.+.|++++|...++......+.+...+..+...+...|+.++|.+.|+++.+.... 
T Consensus       273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-  350 (656)
T PRK15174        273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-  350 (656)
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence            99998764 4467788999999999999999999999999988889999999999999999999999999999886433 


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHhhhhC
Q 010459          382 NVTTANIILLAYLKMKDFKHLRVLLSELPTR  412 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  412 (510)
                      +...+..+..++...|+.++|...|++..+.
T Consensus       351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            2233444567889999999999999998754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=1.1e-15  Score=158.88  Aligned_cols=365  Identities=10%  Similarity=-0.021  Sum_probs=264.0

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS  185 (510)
Q Consensus       106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  185 (510)
                      +...-..+.+.|++++|.+.|+....   ..|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+-.+|.
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            34556678889999999999998764   46788889999999999999999999999998764 235678999999999


Q ss_pred             hcCChHHHHHHHHHHHHCC-C---------------------------CC----CHHHHHHH------------------
Q 010459          186 KIGKFNEALLFLNEMKEMN-L---------------------------SP----QSDTYDGL------------------  215 (510)
Q Consensus       186 ~~g~~~~a~~~~~~m~~~g-~---------------------------~p----~~~t~~~l------------------  215 (510)
                      ..|++++|+.-|......+ .                           .|    ........                  
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            9999999987665443211 0                           00    00000000                  


Q ss_pred             ---------HHHH------HccCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 010459          216 ---------IQAY------GKYKMYDEIDMCLKMMKLDG-C-SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR  278 (510)
Q Consensus       216 ---------i~~~------~~~g~~~~a~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  278 (510)
                               +..+      ...+++++|.+.|+...+.+ . +.+...|+.+...+...|++++|+..|++..+..  |+
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~  363 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PR  363 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC
Confidence                     0000      11246778888888887654 1 2345567777778888888999998888887653  33


Q ss_pred             -HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHH
Q 010459          279 -SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS  357 (510)
Q Consensus       279 -~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  357 (510)
                       ..+|..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...+.......+.+...|..+...
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence             5577778888888888999998888887654 34567788888888888888888888888888888888888888888


Q ss_pred             hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH--H------HHHHHHHhhh
Q 010459          358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI--V------TIGILYDARR  429 (510)
Q Consensus       358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~------t~~~li~~~~  429 (510)
                      +...|+.++|+..|++..+..+. +...|+.+...+...|++++|.+.|++..+..  |+.  .      .++.....+.
T Consensus       443 ~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~  519 (615)
T TIGR00990       443 QYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQ  519 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHH
Confidence            88888888888888888765432 56778888888888889999988888877532  221  1      1111112233


Q ss_pred             hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      ..|++++|.+++++...... .+...+..+...+.+.|++++|.+.|++..+
T Consensus       520 ~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       520 WKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            45788888888887644321 2223456667788888888888888887765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.80  E-value=2e-15  Score=167.18  Aligned_cols=367  Identities=10%  Similarity=-0.012  Sum_probs=217.0

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhCC
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK------------IIGMLCEEGLMEEAVRAFQEMEGFA  169 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g  169 (510)
                      ++..+..+...+.+.|++++|.+.|+...+.....++...|..            +-..+.+.|++++|+..|++..+..
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4566777777778888888888888776652222222222221            2335567788888888888877663


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--------
Q 010459          170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--------  241 (510)
Q Consensus       170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------  241 (510)
                       +.+...+..+...+.+.|++++|++.|++..+.... +...+..+...|. .++.++|...++.+......        
T Consensus       382 -P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~  458 (1157)
T PRK11447        382 -NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS  458 (1157)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             235566777777788888888888888877764321 3344444444442 23344444444333211000        


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH---
Q 010459          242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR---  318 (510)
Q Consensus       242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---  318 (510)
                      .....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|...++++.+.. +.+...+.   
T Consensus       459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~a  536 (1157)
T PRK11447        459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYG  536 (1157)
T ss_pred             hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            00112223334455556666666666665544221 33444555556666666666666666655432 11222221   


Q ss_pred             -----------------------------------------HHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHH
Q 010459          319 -----------------------------------------KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS  357 (510)
Q Consensus       319 -----------------------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  357 (510)
                                                               .+...+...|++++|..++.    ..+.+...+..+...
T Consensus       537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~  612 (1157)
T PRK11447        537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADW  612 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHH
Confidence                                                     22334455566666655543    334455666777778


Q ss_pred             hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccch
Q 010459          358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTG  436 (510)
Q Consensus       358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~  436 (510)
                      +...|+.++|++.|++..+..+. +...+..+...|...|+.++|.+.++...+.  .|+ ...+..+-.++...|+.++
T Consensus       613 ~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~e  689 (1157)
T PRK11447        613 AQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAA  689 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHH
Confidence            88888888888888888876544 6778888888888888888888888877653  343 3444555556777888888


Q ss_pred             HHHHHHHcCCccccccc-----cChhHHHHHhhccCchhHHHHHHhhcC
Q 010459          437 ALEMWKRIGFLFKTVEI-----NTDPLVLAVYGKGHFLRYCEEVYSSLE  480 (510)
Q Consensus       437 a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~  480 (510)
                      |.++++++.........     ..+..+...+.+.|+.++|.+.|++..
T Consensus       690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888887443221111     122223456777888888888887664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.80  E-value=3.3e-15  Score=165.47  Aligned_cols=421  Identities=12%  Similarity=0.004  Sum_probs=242.0

Q ss_pred             HhhhhhHHHHHHHHHcccCCCchhhhhccCCCChh-hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 010459           70 SYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKD-HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGM  148 (510)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  148 (510)
                      .+...|.+++++..+.       ..+... +|+.. ............|+.++|.+.++.+.+  ..+-+...+..+...
T Consensus       121 ll~~~g~~~eA~~~~~-------~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~--~~P~~~~~~~~LA~l  190 (1157)
T PRK11447        121 LLATTGRTEEALASYD-------KLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA--DYPGNTGLRNTLALL  190 (1157)
T ss_pred             HHHhCCCHHHHHHHHH-------HHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            3566778888888777       333322 22221 111111112245778888888888774  234455667777788


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCC------------------CCC-HHHHH-------------------------------
Q 010459          149 LCEEGLMEEAVRAFQEMEGFAL------------------KPS-LEIYN-------------------------------  178 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~------------------~~~-~~~~~-------------------------------  178 (510)
                      +...|+.++|+..|+++.+...                  .+. ...+.                               
T Consensus       191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~  270 (1157)
T PRK11447        191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF  270 (1157)
T ss_pred             HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence            8888888888888887754210                  000 00000                               


Q ss_pred             ---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHH----
Q 010459          179 ---SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-PDHITYNLL----  250 (510)
Q Consensus       179 ---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~l----  250 (510)
                         .....+...|++++|+..|++..+.... +..++..|...|.+.|++++|...|++..+.... ++...|..+    
T Consensus       271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        271 RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence               1123455678888888888888775422 6777888888888888888888888887765321 111222222    


Q ss_pred             --------HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH--
Q 010459          251 --------IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL--  320 (510)
Q Consensus       251 --------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--  320 (510)
                              -..+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..+  
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~  427 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN  427 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence                    2346677888888888888876632 245666777788888888888888888877643 1222222222  


Q ss_pred             ----------------------------------------HHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhh
Q 010459          321 ----------------------------------------AEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC  360 (510)
Q Consensus       321 ----------------------------------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  360 (510)
                                                              ...+...|++++|...++......+.+...+..+...|..
T Consensus       428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                                    2334456777777777777777777777777777777777


Q ss_pred             hcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCC-------------------------
Q 010459          361 LLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK-------------------------  415 (510)
Q Consensus       361 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------------------  415 (510)
                      .|+.++|...++++.+.... +...+..+...+.+.|+.++|+..++.+......                         
T Consensus       508 ~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            78888888887777664332 3333333333344455555555555544321111                         


Q ss_pred             --------------CCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          416 --------------PDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       416 --------------p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                                    ++...+..+-..+.+.|+.++|++.+++..... +.+...+..+...|...|+.++|++.++...+
T Consensus       587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence                          122223333334455555555555555553321 12233344445555566666666666665554


Q ss_pred             CCCCCCc-ccHHHHHHHHHhcCCCCCC
Q 010459          482 YSREKKR-WTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       482 ~g~~p~~-~~~~~li~~~~~~g~~~~a  507 (510)
                        ..|+. ..+..+..++.+.|+.+.|
T Consensus       666 --~~p~~~~~~~~la~~~~~~g~~~eA  690 (1157)
T PRK11447        666 --TANDSLNTQRRVALAWAALGDTAAA  690 (1157)
T ss_pred             --cCCCChHHHHHHHHHHHhCCCHHHH
Confidence              22221 2334445555555555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.78  E-value=4.7e-15  Score=154.23  Aligned_cols=357  Identities=8%  Similarity=-0.037  Sum_probs=276.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      +...-..|.+.|++++|+..|++..+.  .|+...|..+..+|.+.|++++|++.++...+.... +..+|..+-.+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence            445667888999999999999998875  678889999999999999999999999999886422 56788889999999


Q ss_pred             cCCHHHHHHHHHHHHhCCC-----------------------------CCCHHHHHHH----------------------
Q 010459          222 YKMYDEIDMCLKMMKLDGC-----------------------------SPDHITYNLL----------------------  250 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~~g~-----------------------------~~~~~~~~~l----------------------  250 (510)
                      .|++++|..-|......+-                             +++...+..+                      
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL  286 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence            9999999876654322110                             0111111110                      


Q ss_pred             --------HHHH------HHcCCHHHHHHHHHHHHHCC-Ccc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 010459          251 --------IQEF------ACAGLLKRMEGTYKSMLTKR-MHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE  314 (510)
Q Consensus       251 --------i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~  314 (510)
                              +..+      ...+++++|.+.|+.....+ ..| +...+..+...+...|++++|...++..++.. +...
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~  365 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT  365 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence                    0000      11257889999999988765 334 34567778888889999999999999998764 2345


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010459          315 DLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL  394 (510)
Q Consensus       315 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  394 (510)
                      ..+..+...+...|++++|...+.......+.+...|..+...+...|+.++|...|++..+..+. +...+..+...+.
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~  444 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence            678888899999999999999999998888889999999999999999999999999999987544 6777888888999


Q ss_pred             cCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChh------HHHHHhhccC
Q 010459          395 KMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP------LVLAVYGKGH  467 (510)
Q Consensus       395 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~li~~~~~~g  467 (510)
                      +.|++++|+..|++..+.  .|+ ...+..+-..+...|++++|++.+++.............+      .....+...|
T Consensus       445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~  522 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ  522 (615)
T ss_pred             HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence            999999999999998863  454 5778888888999999999999999874443221111111      1122334469


Q ss_pred             chhHHHHHHhhcCCCCCCCCc-ccHHHHHHHHHhcCCCCCC
Q 010459          468 FLRYCEEVYSSLEPYSREKKR-WTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       468 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a  507 (510)
                      ++++|.+++++..+  +.|+. ..+..+...+.+.|+.+.|
T Consensus       523 ~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eA  561 (615)
T TIGR00990       523 DFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEA  561 (615)
T ss_pred             hHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHH
Confidence            99999999998776  34544 4688899999999998766

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=1.4e-14  Score=132.33  Aligned_cols=379  Identities=9%  Similarity=0.004  Sum_probs=255.1

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--h---------------------------cCCH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC--E---------------------------EGLM  155 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~---------------------------~g~~  155 (510)
                      +=|.+++. ...|.++++.-+|+.|++ .++..+..+--.|+..-+  .                           .|++
T Consensus       118 ~E~nL~km-IS~~EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v  195 (625)
T KOG4422|consen  118 TENNLLKM-ISSREVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV  195 (625)
T ss_pred             chhHHHHH-HhhcccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence            44555553 355777888888888877 777766665544443211  1                           2222


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010459          156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM  235 (510)
Q Consensus       156 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m  235 (510)
                      .+  -+|+..     +.+..||..||.|+|+-...++|.+++++-.+...+.+..+||.+|.+-+-..    ..++..+|
T Consensus       196 Ad--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM  264 (625)
T KOG4422|consen  196 AD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEM  264 (625)
T ss_pred             HH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence            22  222222     45778999999999999999999999999988888889999999987654332    37888999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH-HHHHHHHHHh---
Q 010459          236 KLDGCSPDHITYNLLIQEFACAGLLKR----MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLN---  307 (510)
Q Consensus       236 ~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~~---  307 (510)
                      .+..+.||..|+|+++++.++.|+++.    |++++.+|++.|+.|...+|..+|.-+++.++..+ +..+..++..   
T Consensus       265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt  344 (625)
T KOG4422|consen  265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT  344 (625)
T ss_pred             HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence            998899999999999999999998765    46778889999999999999999999998888754 4444444432   


Q ss_pred             -cCCCC----CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC-----c---hHHHHHHHHHhhhhcccccHHHHHHHH
Q 010459          308 -SRTPL----KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR-----T---ELVWCLRLLSHACLLSHRGIDSVVREM  374 (510)
Q Consensus       308 -~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~---~~~~~~li~~~~~~~~~~~a~~~~~~m  374 (510)
                       ..+.|    |...|..-+..|.+..+.+.|.++..-+......     +   ..-|..+....+.....+.-...++.|
T Consensus       345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l  424 (625)
T KOG4422|consen  345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL  424 (625)
T ss_pred             cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             22333    3345566777777777777777776555533221     1   222333455556666677788889999


Q ss_pred             HHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcC-cc--------ch-----HHHH
Q 010459          375 ESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGF-DG--------TG-----ALEM  440 (510)
Q Consensus       375 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~--------~~-----a~~~  440 (510)
                      ...-+-|+..+..-++.|..-.|+++-.-+++..|+..|-.-+...-.-++..+++.. ..        ..     |..+
T Consensus       425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~  504 (625)
T KOG4422|consen  425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI  504 (625)
T ss_pred             ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence            9888889999999999999999999999999999988774333333333333333222 11        00     1111


Q ss_pred             HHHc-----CCccccccccChhHHHHHhhccCchhHHHHHHhhcCC-CCCCCCcccHHHHHH
Q 010459          441 WKRI-----GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP-YSREKKRWTYQNLID  496 (510)
Q Consensus       441 ~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~  496 (510)
                      ++..     ............+.+.-.+.|.|+.++|.+++..+.. ...-|..-..|+|+.
T Consensus       505 ~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E  566 (625)
T KOG4422|consen  505 KEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE  566 (625)
T ss_pred             HHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence            1111     0111222333455566678899999999999998854 334455555565544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.74  E-value=8.7e-14  Score=147.56  Aligned_cols=371  Identities=12%  Similarity=0.004  Sum_probs=224.4

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      .+..+...+...|++++|.++|+...+  ..+.+...+..+...+.+.|++++|+..+++..+.. +.+.. |..+...+
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l  126 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVY  126 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHH
Confidence            466666667777777777777776653  223345555666666777777777777777766552 22344 66666667


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH---
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH------ITYNLLIQEFA---  255 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~---  255 (510)
                      ...|+.++|+..+++..+.... +...+..+...+.+.+..++|.+.++....   .|+.      .....++..+.   
T Consensus       127 ~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~  202 (765)
T PRK10049        127 KRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT  202 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc
Confidence            7777777777777777664322 344445566666666677777766665543   2221      01111122111   


Q ss_pred             --HcCCH---HHHHHHHHHHHHC-CCccCHH-HH----HHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHH
Q 010459          256 --CAGLL---KRMEGTYKSMLTK-RMHLRSS-TM----VAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEV  323 (510)
Q Consensus       256 --~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~----~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~  323 (510)
                        ..+++   ++|++.++.+.+. ...|+.. .+    ...+.++...|++++|+..|+.+.+.+-. |+. ....+...
T Consensus       203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~  281 (765)
T PRK10049        203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA  281 (765)
T ss_pred             cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence              11223   5677777777643 2222221 11    11133455668888888888888776522 221 22234667


Q ss_pred             HHhhcchhHHHHHHHHHHhhcCCc----hHHHHHHHHHhhhhcccccHHHHHHHHHHCCC-----------CcC---HHH
Q 010459          324 YIKNYMFSRLDDLGDDLASRIGRT----ELVWCLRLLSHACLLSHRGIDSVVREMESAKV-----------RWN---VTT  385 (510)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~---~~~  385 (510)
                      |...|++++|...++.+....+.+    ......+..++...|+.++|.++++.+.+..+           .|+   ...
T Consensus       282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a  361 (765)
T PRK10049        282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG  361 (765)
T ss_pred             HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence            888888888888877766544333    23455566677788888888888888776532           123   123


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhh
Q 010459          386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG  464 (510)
Q Consensus       386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  464 (510)
                      +..+...+...|+.++|+++++++...  .|+ ...+..+...+...|++++|++.+++..... |.+...+-.....+.
T Consensus       362 ~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al  438 (765)
T PRK10049        362 QSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHH
Confidence            455666777888888888888888753  343 4556666667778888888888888774432 222333444455677


Q ss_pred             ccCchhHHHHHHhhcCCCCCCCCcc
Q 010459          465 KGHFLRYCEEVYSSLEPYSREKKRW  489 (510)
Q Consensus       465 ~~g~~~~A~~~~~~m~~~g~~p~~~  489 (510)
                      +.|++++|+++++++.+  ..|+..
T Consensus       439 ~~~~~~~A~~~~~~ll~--~~Pd~~  461 (765)
T PRK10049        439 DLQEWRQMDVLTDDVVA--REPQDP  461 (765)
T ss_pred             HhCCHHHHHHHHHHHHH--hCCCCH
Confidence            78888888888888876  455543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.74  E-value=7.5e-15  Score=139.89  Aligned_cols=363  Identities=14%  Similarity=0.085  Sum_probs=271.9

Q ss_pred             hhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHH
Q 010459           64 TTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ  143 (510)
Q Consensus        64 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  143 (510)
                      |.-+-+.+...|.+.+++..+.       .+++..+ -..+.|-.+..++...|+.+.|.+.|....+   +.|+.....
T Consensus       119 ysn~aN~~kerg~~~~al~~y~-------~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~  187 (966)
T KOG4626|consen  119 YSNLANILKERGQLQDALALYR-------AAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCAR  187 (966)
T ss_pred             HHHHHHHHHHhchHHHHHHHHH-------HHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhh
Confidence            4445555566666777776665       3322211 1234666777777788888888887776643   456665554


Q ss_pred             HHHHHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 010459          144 KIIGMLCE-EGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYG  220 (510)
Q Consensus       144 ~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~  220 (510)
                      +-+.-+.| .|++.+|...+-+..+.  .|. .+.|+.|-..+-..|+..+|+.-|++.+..  .|+ ...|-.|-..|.
T Consensus       188 s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k  263 (966)
T KOG4626|consen  188 SDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK  263 (966)
T ss_pred             cchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH
Confidence            44444433 57788887777776654  343 467888888888888888888888888764  343 347777888888


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHH
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKME  299 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~  299 (510)
                      ..+.++.|...+.+..... +-..+.+..|...|-..|++|.|+..|++..+.  .|+ ...|+.|..++-..|++.+|.
T Consensus       264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~  340 (966)
T KOG4626|consen  264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAV  340 (966)
T ss_pred             HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHH
Confidence            8888888888888776553 235677777888888899999999999988865  343 568999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCC
Q 010459          300 KFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV  379 (510)
Q Consensus       300 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  379 (510)
                      +.+....... +--....+.|...|...|.+++|.+++.......+.-...++.+...|-+.|+.++|+..+++..+.  
T Consensus       341 ~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--  417 (966)
T KOG4626|consen  341 DCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--  417 (966)
T ss_pred             HHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--
Confidence            9998887654 2335567888899999999999999988888888888888999999999999999999999988875  


Q ss_pred             CcC-HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcCCccc
Q 010459          380 RWN-VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMWKRIGFLFK  449 (510)
Q Consensus       380 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~  449 (510)
                      .|+ ...|+.+-..|-..|+++.|.+.+.+.+.  +.|.. ..++.|-..+..+|+..+|+.-+++..+..+
T Consensus       418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            444 56788888889999999999999888876  45654 5677888889999999999999988755433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=5.8e-15  Score=140.65  Aligned_cols=381  Identities=13%  Similarity=0.022  Sum_probs=307.6

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN-SIIH  182 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~  182 (510)
                      ++|..+.+.+...|++.+|+..++.+.+  .-+-....|..+..++...|+.+.|.+.|.+..+.  .|+..... .+-.
T Consensus       117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn  192 (966)
T KOG4626|consen  117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence            5888899999999999999999998874  22335678888999999999999999999888865  55554433 3444


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459          183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  262 (510)
                      ..-..|++++|...|.+..+.... =.+.|+.|-..+-..|++..|.+-|++..+.. +--...|-.|-..|...+.++.
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchH
Confidence            455689999999999888774321 34678889989999999999999999998653 2235678888888999999999


Q ss_pred             HHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459          263 MEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA  341 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  341 (510)
                      |...|......  .|+ ...+..+...|-..|.+|-|+..+++.++.. +--+..|+.|..++-..|++.++.+.+....
T Consensus       271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            99998887654  444 5678888888999999999999999998754 2235689999999999999999999999999


Q ss_pred             hhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HH
Q 010459          342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VT  420 (510)
Q Consensus       342 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t  420 (510)
                      ...+....+.+.+...|...|..+.|..+|....+--+. =...+|.|...|-+.|++++|+..+++.++  |+|+. ..
T Consensus       348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda  424 (966)
T KOG4626|consen  348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA  424 (966)
T ss_pred             HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence            999999999999999999999999999999988775322 346788999999999999999999999886  77875 67


Q ss_pred             HHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCc-ccHHHHHHHHH
Q 010459          421 IGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKR-WTYQNLIDLVI  499 (510)
Q Consensus       421 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~  499 (510)
                      |+.+-..|...|+.+.|+..+.+.....+ .-.+.++.|.+.|...|++.+|.+-+++..+  ++||. ..|.-++.++-
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence            88888889999999999999988743311 1224467788899999999999999998887  55553 25555555543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=7.2e-14  Score=127.76  Aligned_cols=244  Identities=16%  Similarity=0.151  Sum_probs=185.5

Q ss_pred             hhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010459           94 ILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS  173 (510)
Q Consensus        94 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~  173 (510)
                      ++-...+-++.+|.++|.++++-...+.|.+++..... ...+.+..+||.+|.+-.-..+    .++..+|....+.||
T Consensus       198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn  272 (625)
T KOG4422|consen  198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN  272 (625)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence            33334455778899999999998889999999988877 6778888999998876543322    778888988888999


Q ss_pred             HHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHh----CCCC---
Q 010459          174 LEIYNSIIHGYSKIGKFNE----ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMCLKMMKL----DGCS---  241 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~---  241 (510)
                      ..|+|+++++.++.|+++.    |++++.+|++-|+.|...+|..+|..+++-++..+ |..++.++..    ..++   
T Consensus       273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~  352 (625)
T KOG4422|consen  273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT  352 (625)
T ss_pred             hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence            9999999999999997654    56788889999999999999999998888877644 4445554432    2222   


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CccC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459          242 -PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR----MHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK  313 (510)
Q Consensus       242 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~  313 (510)
                       .|...|..-++.|.+..+.+.|.++..-+....    +.|+   .+-|..+....|+....+.-...|+.|+-+-+-|.
T Consensus       353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~  432 (625)
T KOG4422|consen  353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH  432 (625)
T ss_pred             CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence             355667778888888888888888876665421    3333   24466777888888888888888988887777788


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459          314 EDLVRKLAEVYIKNYMFSRLDDLGDDLAS  342 (510)
Q Consensus       314 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~  342 (510)
                      ..+..-++.+..-.+.++-..+++.+...
T Consensus       433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~  461 (625)
T KOG4422|consen  433 SQTMIHLLRALDVANRLEVIPRIWKDSKE  461 (625)
T ss_pred             chhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence            88888888888888888888887766553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.68  E-value=1.2e-12  Score=138.97  Aligned_cols=357  Identities=9%  Similarity=-0.049  Sum_probs=258.8

Q ss_pred             hhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 010459           71 YHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLC  150 (510)
Q Consensus        71 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  150 (510)
                      +...+.+.+++..+.       ..+.. .+.++..+..+...+...|++++|...++...+  ..+.+.. +..+...+.
T Consensus        59 ~~~~g~~~~A~~~~~-------~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~--~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         59 YRNLKQWQNSLTLWQ-------KALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS--GAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH-HHHHHHHHH
Confidence            345556666666665       43333 233466677888889999999999999999985  3444556 888999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHc---
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS------DTYDGLIQAYGK---  221 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~~---  221 (510)
                      ..|+.++|+..+++..+... .+...+..+...+.+.+..+.|++.++....   .|+.      .....++..+..   
T Consensus       128 ~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~  203 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR  203 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999998743 3566777788889899999999999987653   2331      122223333322   


Q ss_pred             --cCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHH
Q 010459          222 --YKMY---DEIDMCLKMMKLD-GCSPDHI-TY----NLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAY  289 (510)
Q Consensus       222 --~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~  289 (510)
                        .+++   ++|...++.+.+. ...|+.. .+    ...+..+...|++++|...|+.+.+.+.+ |+. .-..+..+|
T Consensus       204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y  282 (765)
T PRK10049        204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY  282 (765)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence              2234   6788888888754 2223321 11    11134556779999999999999987632 332 222257789


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc---------------hHHH
Q 010459          290 MNFGMLDKMEKFYKRLLNSRTPL---KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT---------------ELVW  351 (510)
Q Consensus       290 ~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~  351 (510)
                      ...|++++|+..++.+.+..-..   .......|..++.+.+++++|...+..+....+..               ...+
T Consensus       283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~  362 (765)
T PRK10049        283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ  362 (765)
T ss_pred             HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence            99999999999999987643111   13456667778899999999999988887664421               2244


Q ss_pred             HHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhh
Q 010459          352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRI  430 (510)
Q Consensus       352 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~  430 (510)
                      ......+...|+.++|+++++++....+. +...+..+...+...|++++|++.+++..+.  .|+. ..+......+..
T Consensus       363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        363 SLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence            56677888899999999999999887554 6888999999999999999999999998874  4764 444455557788


Q ss_pred             cCccchHHHHHHHcCC
Q 010459          431 GFDGTGALEMWKRIGF  446 (510)
Q Consensus       431 ~~~~~~a~~~~~~~~~  446 (510)
                      .+++++|...++++..
T Consensus       440 ~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        440 LQEWRQMDVLTDDVVA  455 (765)
T ss_pred             hCCHHHHHHHHHHHHH
Confidence            8899999999998843

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.67  E-value=3e-12  Score=133.71  Aligned_cols=183  Identities=9%  Similarity=0.014  Sum_probs=132.5

Q ss_pred             hhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 010459           72 HEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE  151 (510)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  151 (510)
                      .+.|....++..+.       +.++..+.-.+..+ .++..+...|+.++|+..+++..  .....+......+...|..
T Consensus        45 ~r~Gd~~~Al~~L~-------qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         45 ARAGDTAPVLDYLQ-------EESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRN  114 (822)
T ss_pred             HhCCCHHHHHHHHH-------HHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHH
Confidence            46667778888877       44433332222333 78888889999999999999775  2222333444444668888


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC  231 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~  231 (510)
                      .|++++|+++|+++.+.... |...+..++..+.+.++.++|++.++++...  .|+...+..++..+...++..+|...
T Consensus       115 ~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence            89999999999999988533 5677788889999999999999999999775  46666665555555556667679999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459          232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  268 (510)
                      ++++.+.. +-+...+..++.+..+.|-...|+++..
T Consensus       192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            99998875 3456667777778888877777766554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.62  E-value=6.2e-12  Score=131.39  Aligned_cols=380  Identities=10%  Similarity=0.011  Sum_probs=232.0

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH--HHHHHHHhc
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP-SLEIYN--SIIHGYSKI  187 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~--~li~~~~~~  187 (510)
                      ..+.|++..|++.|+...+   ..|+.  .++ .++..+...|+.++|+..+++..    .| +...+.  .+...|...
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~  115 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE  115 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence            4589999999999998864   34443  244 88899999999999999999998    34 233333  335688889


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459          188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY  267 (510)
Q Consensus       188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  267 (510)
                      |++++|+++|+++.+.... +...+..++..|...++.++|++.++++...  .|+...+-.++..+...++..+|++.+
T Consensus       116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~  192 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS  192 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence            9999999999999987644 5677778899999999999999999999876  566666644444444466676799999


Q ss_pred             HHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH------HHHHHHHHH-----HhhcchhHHHHH
Q 010459          268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED------LVRKLAEVY-----IKNYMFSRLDDL  336 (510)
Q Consensus       268 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~-----~~~~~~~~a~~~  336 (510)
                      +++.+.... +...+..+..+..+.|-...|.++.++-... +.+...      ....+|..-     .....+..+.+.
T Consensus       193 ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a  270 (822)
T PRK14574        193 SEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA  270 (822)
T ss_pred             HHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            999987422 5677788888888888888877766542211 000000      000011000     011222222222


Q ss_pred             HH---HHHhhcCCch---HHHH----HHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHH
Q 010459          337 GD---DLASRIGRTE---LVWC----LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL  406 (510)
Q Consensus       337 ~~---~~~~~~~~~~---~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  406 (510)
                      +.   .+....++++   ..|.    -.+.++...++..++.+.|+.+...+.+....+-..+.++|...+++++|..+|
T Consensus       271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~  350 (822)
T PRK14574        271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL  350 (822)
T ss_pred             HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            22   2222111111   1111    134455666666777777777776664434456666677777777777777777


Q ss_pred             HhhhhCC-----CCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccc-----------cccccC---hhHHHHHhhccC
Q 010459          407 SELPTRH-----VKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFK-----------TVEINT---DPLVLAVYGKGH  467 (510)
Q Consensus       407 ~~m~~~g-----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~---~~~li~~~~~~g  467 (510)
                      +......     ..++......|..++...+++++|..+++++....+           .|+..-   ....+..+...|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g  430 (822)
T PRK14574        351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN  430 (822)
T ss_pred             HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            7765321     112333345666667777777777777766643211           011000   112344556667


Q ss_pred             chhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCC
Q 010459          468 FLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL  506 (510)
Q Consensus       468 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  506 (510)
                      ++.+|++.++++... -+-|......+-+.+...|+.+.
T Consensus       431 dl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~  468 (822)
T PRK14574        431 DLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRK  468 (822)
T ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH
Confidence            777777777666542 22244455555555555555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.57  E-value=2.4e-14  Score=133.95  Aligned_cols=261  Identities=13%  Similarity=0.039  Sum_probs=88.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY  222 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  222 (510)
                      .+...+.+.|++++|++++++..... ...|...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            34556666677777777775433322 1234445555555666667777777777777665433 44456666655 566


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHhcCChhHHHHH
Q 010459          223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSSTMVAILDAYMNFGMLDKMEKF  301 (510)
Q Consensus       223 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~  301 (510)
                      +++++|.+++...-+.  .++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777776665443  3455566667777777777777777777765432 334556666666777777777777777


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459          302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW  381 (510)
Q Consensus       302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  381 (510)
                      +++..+.. +-|....+.++..+...|+.+++..++.......+.++..|..+..++...|+.++|+..|++..+.... 
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-  246 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-  246 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence            77776654 2245566667777777777777666666666555666666777777777777777777777777664333 


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          382 NVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      |......+..++.+.|+.++|.++.++..
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -HHHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            66666677777777777777777766554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.57  E-value=9.3e-11  Score=125.24  Aligned_cols=104  Identities=7%  Similarity=0.031  Sum_probs=71.6

Q ss_pred             ChhhHHHH-HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          102 TKDHFWAV-IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE-EGLMEEAVRAFQEMEGFALKPSLEIYNS  179 (510)
Q Consensus       102 ~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~  179 (510)
                      .+.+.... .+.|.+.|++++|.+++..+.+ .+ +.+..-...|-..|.+ .++ +++..++...    ++.+...+..
T Consensus       180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k-~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~a  252 (987)
T PRK09782        180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQ-QN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRIT  252 (987)
T ss_pred             CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHH
Confidence            34444444 7888889999999999998876 32 3344446666667777 366 7777775542    2457888888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHH
Q 010459          180 IIHGYSKIGKFNEALLFLNEMKEMNLS-PQSDTY  212 (510)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~  212 (510)
                      +...|.+.|+.++|.++++++...-.. |+..+|
T Consensus       253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~  286 (987)
T PRK09782        253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSW  286 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence            888888888888888888887654322 444444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.55  E-value=2.7e-11  Score=118.77  Aligned_cols=281  Identities=12%  Similarity=0.058  Sum_probs=148.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSLEI-YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD--GLIQAYGKYKMYDEI  228 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~a  228 (510)
                      .|+++.|++......+..  ++... |-....+..+.|+++.|.+.|.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            356666665555544321  11222 222223335556666666666665542  23332221  224455556666666


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCChhHHHHH
Q 010459          229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-------STMVAILDAYMNFGMLDKMEKF  301 (510)
Q Consensus       229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~  301 (510)
                      ...++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66666665544 334555555556666666666666666666655433211       1222223322233333444444


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459          302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW  381 (510)
Q Consensus       302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  381 (510)
                      ++.+.+. .+.++.....+...+...|+.++|.+........ ++++..  .++.+....++.+++++..+...+..+. 
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-  326 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-  326 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence            4433221 1234455555555666666666665555544442 222211  1222333345666677777777666444 


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      |...+..+-..|.+.|++++|.+.|+...+.  .|+..++..+-..+.+.|+.++|.+++++-
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5566667777777777777777777777753  577777777777777777777777777754

>TIGR00540 hemY_coli hemY protein

Probab=99.53  E-value=4.3e-11  Score=117.96  Aligned_cols=289  Identities=10%  Similarity=0.003  Sum_probs=162.9

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSL-EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEID  229 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~  229 (510)
                      ..|+++.|.+.+....+.  .|+. ..+-....++.+.|+.+.|.+.+.+..+....++....-.....+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            346677776666665554  2332 2223334555566677777777766654332222223333455666667777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHH-HHHHHH---HhcCChhHHHHHHHHH
Q 010459          230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV-AILDAY---MNFGMLDKMEKFYKRL  305 (510)
Q Consensus       230 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~---~~~g~~~~a~~~~~~m  305 (510)
                      ..++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.++. +...+. .-..++   ...+..+++.+.+..+
T Consensus       174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            7777666654 335555666666677777777777777766666543 222221 111111   1222222223333333


Q ss_pred             HhcCC---CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHH--HHHHHHhhhhcccccHHHHHHHHHHCCCC
Q 010459          306 LNSRT---PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW--CLRLLSHACLLSHRGIDSVVREMESAKVR  380 (510)
Q Consensus       306 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~  380 (510)
                      .+...   +.+...+..+...+...|+.++|.+......+..+.+....  ..........++.+.+.+.++...+..+.
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~  331 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD  331 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence            33211   12555666666666666666666666666655544443211  11112222234556667777776665332


Q ss_pred             cCH--HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          381 WNV--TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       381 p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                       |.  ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus       332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             33  5556777788888888888888885444445688888888888888888888888888764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.53  E-value=4.7e-11  Score=117.05  Aligned_cols=283  Identities=11%  Similarity=0.014  Sum_probs=221.9

Q ss_pred             cCCCCcHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHH
Q 010459          116 SSRSRQIPQVFDMWKNIEKSRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN--SIIHGYSKIGKFNE  192 (510)
Q Consensus       116 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~  192 (510)
                      .|+++.|.+......+   ..+++.. |-.......+.|+++.|.+.|.++.+.  .|+.....  .....+...|+++.
T Consensus        97 eGd~~~A~k~l~~~~~---~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNAD---HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence            6999999988876543   2222333 333344557899999999999999875  55554333  34678889999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHH
Q 010459          193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH-------ITYNLLIQEFACAGLLKRMEG  265 (510)
Q Consensus       193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~  265 (510)
                      |.+.++++.+.... +......+...|.+.|++++|..++..+.+.+..++.       .+|..++.......+.+...+
T Consensus       172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999887643 6778899999999999999999999999987654322       234444554555566677777


Q ss_pred             HHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459          266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG  345 (510)
Q Consensus       266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  345 (510)
                      +++.+.+. .+.+......+..++...|+.++|.+++....+.  .++....  ++.+....++.+++.+..+...+..+
T Consensus       251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P  325 (398)
T PRK10747        251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG  325 (398)
T ss_pred             HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence            77776433 2347778889999999999999999999999874  4555322  33344455899999999999999999


Q ss_pred             CchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          346 RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       346 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      .++....++...+...+++++|.+.|+...+.  .|+..++..+...+.+.|+.++|.+++++-..
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999986  58889989999999999999999999997653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.51  E-value=1.8e-13  Score=128.09  Aligned_cols=262  Identities=15%  Similarity=0.100  Sum_probs=116.9

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK  186 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  186 (510)
                      .+...+.+.|++++|+++++.... .. .+.|...|..+...+...++++.|++.++++...+.. +...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence            457778899999999999965442 22 2345555666777777889999999999999987644 66678888877 79


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010459          187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEG  265 (510)
Q Consensus       187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~  265 (510)
                      .+++++|.+++...-+..  ++...+..++..+.+.++++++..+++.+... ..+.+...|..+...+.+.|+.++|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999998875543  56677888999999999999999999998754 235678889999999999999999999


Q ss_pred             HHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459          266 TYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG  345 (510)
Q Consensus       266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  345 (510)
                      .+++..+.... |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|...+.......+
T Consensus       168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence            99999877422 57788889999999999999999999888764 55666788999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459          346 RTELVWCLRLLSHACLLSHRGIDSVVREMES  376 (510)
Q Consensus       346 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  376 (510)
                      .|+.....+...+...|+.++|.++..+..+
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999998877543

>TIGR00540 hemY_coli hemY protein

Probab=99.50  E-value=7.3e-11  Score=116.33  Aligned_cols=297  Identities=9%  Similarity=-0.002  Sum_probs=218.5

Q ss_pred             HHHHHHH--HhcCCCCcHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          107 WAVIRFL--KNSSRSRQIPQVFDMWKNIEKSRINEF-NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       107 ~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      ..+.++.  ...|+++.|.+.+....+   ..|+.. .+-....++.+.|+.+.|.+.+.+..+....++....-.....
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l  162 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence            3445544  357999999999987653   345533 3444567788889999999999998765322223344445788


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCC
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-LLIQEF---ACAGL  259 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~  259 (510)
                      +.+.|+++.|.+.++.+.+.... +..++..+...|.+.|++++|.+++..+.+.++. +...+. .-..++   ...+.
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~  240 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM  240 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999987633 6678889999999999999999999999988754 333332 112222   33333


Q ss_pred             HHHHHHHHHHHHHCCC---ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHH--HhhcchhHH
Q 010459          260 LKRMEGTYKSMLTKRM---HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV-RKLAEVY--IKNYMFSRL  333 (510)
Q Consensus       260 ~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~--~~~~~~~~a  333 (510)
                      .+++.+.+..+.+...   +.+...+..+...+...|+.++|.+++++..+..  ||.... ..++..+  ...++.+.+
T Consensus       241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~  318 (409)
T TIGR00540       241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKL  318 (409)
T ss_pred             HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHH
Confidence            3444445555554422   1377888889999999999999999999998864  333211 0123332  334677788


Q ss_pred             HHHHHHHHhhcCCch--HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          334 DDLGDDLASRIGRTE--LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       334 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      .+.++......+.++  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus       319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888888888888  77888999999999999999999965554556888888899999999999999999999753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.50  E-value=1.2e-10  Score=124.42  Aligned_cols=321  Identities=8%  Similarity=-0.047  Sum_probs=205.7

Q ss_pred             HHhcCCCCcHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhcCC---HHHHHHH------------HHH----------HH
Q 010459          113 LKNSSRSRQIPQVFDMWKNI-EKSRINEFNSQKIIGMLCEEGL---MEEAVRA------------FQE----------ME  166 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~---~~~A~~~------------~~~----------m~  166 (510)
                      ..+.|+.++|.++++..... ..-.++...-+-++..|.+.+.   ..++..+            ..+          ..
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            34677778888877766541 1122344455567777777665   2222222            111          11


Q ss_pred             hC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 010459          167 GF-AL-KP--SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSP  242 (510)
Q Consensus       167 ~~-g~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  242 (510)
                      .. +. ++  +...|..+..++.. ++.++|...|.+....  .|+......+...+...|++++|...|+++...  +|
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p  540 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM  540 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence            00 11 23  56667777776665 6777788877776654  355544444444556788888888888877544  34


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010459          243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE  322 (510)
Q Consensus       243 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  322 (510)
                      +...+..+...+.+.|+.++|...+++..+... ++...+..+.......|++++|...+++..+..  |+...+..+..
T Consensus       541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~  617 (987)
T PRK09782        541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARAT  617 (987)
T ss_pred             CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence            455566666777888888888888888776541 122333333344445688888888888877654  56777777888


Q ss_pred             HHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHH
Q 010459          323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL  402 (510)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  402 (510)
                      .+.+.|++++|...+.......+.+...++.+...+...|+.++|++.|++..+..+. +...+..+..++.+.|++++|
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence            8888888888888888888888888888888888888888888888888887776544 667777788888888888888


Q ss_pred             HHHHHhhhhCCCCCCHHH-HHHHHHhhhhcCccchHHHHHHHc
Q 010459          403 RVLLSELPTRHVKPDIVT-IGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       403 ~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      +..|++..+.  .|+... .-..-....+..+++.+.+-+++.
T Consensus       697 ~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        697 QHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             HHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888888753  354422 112222233334455555544443

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=1.7e-13  Score=90.68  Aligned_cols=50  Identities=46%  Similarity=0.764  Sum_probs=32.5

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      ||+++||++|++|++.|++++|+++|++|++.|++||..||++||++|+|
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56666666666666666666666666666666666666666666666654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.45  E-value=2.9e-10  Score=114.60  Aligned_cols=114  Identities=11%  Similarity=-0.011  Sum_probs=54.1

Q ss_pred             ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      ++|+++|.+..+..+. |...-|-+--.++..|++.+|..+|.+.++... -+..+|.-+-.+|...|++..|+++|+..
T Consensus       629 ~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~  706 (1018)
T KOG2002|consen  629 EKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC  706 (1018)
T ss_pred             HHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555544433 444444444455555555555555555554321 12233444444455555555555555543


Q ss_pred             -CCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459          445 -GFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE  480 (510)
Q Consensus       445 -~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  480 (510)
                       .......+......|..++-++|.+.+|.+......
T Consensus       707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             112222333444444555555555555555544433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.45  E-value=1.3e-09  Score=109.33  Aligned_cols=328  Identities=14%  Similarity=0.107  Sum_probs=236.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  228 (510)
                      ....|++++|.+++.+..+.. +.+...|-+|-..|-+.|+.++++..+--.-.... -|..-|..+-....+.|.++.|
T Consensus       149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHH
Confidence            333499999999999988775 45778899999999999999998887766544432 2678888888888889999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 010459          229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS----STMVAILDAYMNFGMLDKMEKFYKR  304 (510)
Q Consensus       229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~  304 (510)
                      .-.|.+..+.. +++....--=+..|-+.|+...|.+.|.++.+...+.|.    .+--.+++.+...++.+.|.+.+..
T Consensus       227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999988775 445444445567788889999999999998876432222    2333456667777777888888877


Q ss_pred             HHh-cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhh-cCCchHHH--------------------------HHHHH
Q 010459          305 LLN-SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-IGRTELVW--------------------------CLRLL  356 (510)
Q Consensus       305 m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--------------------------~~li~  356 (510)
                      ... .+-..+...++.+...|.+...++.+.........+ ..+++.-|                          .-++.
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i  385 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI  385 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence            765 333456677888888888888888888776555541 11111111                          11223


Q ss_pred             HhhhhcccccHHHHHHHHHHCCCCc--CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCcc
Q 010459          357 SHACLLSHRGIDSVVREMESAKVRW--NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG  434 (510)
Q Consensus       357 ~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~  434 (510)
                      +.......+...-+.....+..+.|  +...|.-+..+|.+.|++.+|+.+|..+......-+...|--+-.+|...|..
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~  465 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY  465 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence            3333444444555555555555333  56678888999999999999999999999765555677888888899999999


Q ss_pred             chHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459          435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE  480 (510)
Q Consensus       435 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  480 (510)
                      ++|++.+++.... .|.+...--.|-..+-+.|+.++|.+.++.+.
T Consensus       466 e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  466 EEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999988443 12233344456678889999999999999976

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.44  E-value=3.3e-10  Score=114.24  Aligned_cols=392  Identities=11%  Similarity=0.021  Sum_probs=253.3

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      |.-+-++|-..|++++|...|-...   +..||.++  +--|..+|.+.|+++.+...|+...+.. +-+..+.-.|-..
T Consensus       310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~---k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  310 FYQLGRSYHAQGDFEKAFKYYMESL---KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHH---ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence            4445566666677777766665443   23344333  3345666777777777777777666552 2234555555555


Q ss_pred             HHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHH
Q 010459          184 YSKIG----KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM----MKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       184 ~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~~~~~~~~~li~~~~  255 (510)
                      |+..+    ..+.|..++....+.- ..|...|-.+-..|-...-+ .++.+|..    +...+-.+-....|.+-.-+.
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf  463 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHF  463 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence            55553    3455555555554443 23566666666665544333 33554443    334444566777888888888


Q ss_pred             HcCCHHHHHHHHHHHHHC---CCccCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010459          256 CAGLLKRMEGTYKSMLTK---RMHLRS------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK  326 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~~---g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  326 (510)
                      ..|.+++|...|......   -..+|.      .+--.+....-..++.+.|.++|..+.+.. +.-+..|--+..+-..
T Consensus       464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~  542 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARD  542 (1018)
T ss_pred             HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHh
Confidence            888888888888876643   112222      222234455556678888888888888754 2222333333333333


Q ss_pred             hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC-CCcCHHHHHHHHHHHHc----------
Q 010459          327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRWNVTTANIILLAYLK----------  395 (510)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~----------  395 (510)
                      .+...+|...+.........++..|+.+...|.....+..|.+-|......- ..+|..+..+|-+.|.+          
T Consensus       543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e  622 (1018)
T KOG2002|consen  543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE  622 (1018)
T ss_pred             ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence            4667888888888889999999999999999999999988888777766543 23566666666554432          


Q ss_pred             --CCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHH
Q 010459          396 --MKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYC  472 (510)
Q Consensus       396 --~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  472 (510)
                        .+..++|+++|.+..+.  .| |...-+-+--.++..|++.+|..+|.+...... ....+|--+.+.|..+|.+..|
T Consensus       623 k~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A  699 (1018)
T KOG2002|consen  623 KEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA  699 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence              24567788888888764  34 444444444457788999999999999854422 2345677778899999999999


Q ss_pred             HHHHhhcCC-CCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459          473 EEVYSSLEP-YSREKKRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       473 ~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a  507 (510)
                      .++|+.... .+..-++...+.|-+++.+.|++.+|
T Consensus       700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea  735 (1018)
T KOG2002|consen  700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA  735 (1018)
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence            999987665 44455666778899999998876554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=1.1e-10  Score=107.80  Aligned_cols=419  Identities=13%  Similarity=0.024  Sum_probs=236.7

Q ss_pred             HHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHH-HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH----HHH
Q 010459           68 VESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFW-AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE----FNS  142 (510)
Q Consensus        68 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~  142 (510)
                      ...|..+....+++..++       .+++...-|+....- .+-..+.+...+.+|+++++.... .-...+-    ...
T Consensus       208 aqqy~~ndm~~ealntye-------iivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald-qvpsink~~rikil  279 (840)
T KOG2003|consen  208 AQQYEANDMTAEALNTYE-------IIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD-QVPSINKDMRIKIL  279 (840)
T ss_pred             HHHhhhhHHHHHHhhhhh-------hhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh-hccccchhhHHHHH
Confidence            355777777778887776       333333334333221 233445667778888888876553 2111222    233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------HH
Q 010459          143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY--------DG  214 (510)
Q Consensus       143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------~~  214 (510)
                      +.+--.+.+.|++++|+.-|+...+.  .||..+--.|+-++...|+-++..+.|..|..-...||..-|        ..
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~  357 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN  357 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence            44444567889999999999988766  688776555555666788999999999999765444443333        12


Q ss_pred             HHHHHHccC--------CHHHHHHHH---HHHHhCCCCCCHH---------------------HHHHHHHHHHHcCCHHH
Q 010459          215 LIQAYGKYK--------MYDEIDMCL---KMMKLDGCSPDHI---------------------TYNLLIQEFACAGLLKR  262 (510)
Q Consensus       215 li~~~~~~g--------~~~~a~~~~---~~m~~~g~~~~~~---------------------~~~~li~~~~~~g~~~~  262 (510)
                      |+.--.+..        +-..|++..   -.+..--+.||-.                     .--.-...|.++|+++.
T Consensus       358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~  437 (840)
T KOG2003|consen  358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG  437 (840)
T ss_pred             HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence            222211111        011111111   1111101111100                     00011235677777777


Q ss_pred             HHHHHHHHHHCCCccCHHH-------------------------------HHHHH-----HHHHhcCChhHHHHHHHHHH
Q 010459          263 MEGTYKSMLTKRMHLRSST-------------------------------MVAIL-----DAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~~~t-------------------------------~~~ll-----~~~~~~g~~~~a~~~~~~m~  306 (510)
                      |.++++-..+..-+.-+..                               |+.-.     ......|++++|.+.+++.+
T Consensus       438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal  517 (840)
T KOG2003|consen  438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL  517 (840)
T ss_pred             HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence            7777766654322111110                               11000     00112477888888888887


Q ss_pred             hcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHH
Q 010459          307 NSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA  386 (510)
Q Consensus       307 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  386 (510)
                      ...-......||.=+ .+-+.|++++|...|-.+......+..+...+...|-...+..+|.+++-+.... ++-|....
T Consensus       518 ~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il  595 (840)
T KOG2003|consen  518 NNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL  595 (840)
T ss_pred             cCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence            665444444444322 3556678888888888888777777777777777777777777777777554433 33366777


Q ss_pred             HHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhh-c
Q 010459          387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYG-K  465 (510)
Q Consensus       387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~  465 (510)
                      +-|...|-+.|+-..|++.+-+--+. +.-+..|..-|-.-|....-+++++.+|++...  ..|+..-|..++..|. +
T Consensus       596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr  672 (840)
T KOG2003|consen  596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR  672 (840)
T ss_pred             HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence            77777788888777777765443322 233556655555555556566777777776522  2355566666665443 4


Q ss_pred             cCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcC
Q 010459          466 GHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHN  502 (510)
Q Consensus       466 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  502 (510)
                      .|++..|..+++..... ++-|..-..-|++-+...|
T Consensus       673 sgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  673 SGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             cccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence            67777777777666542 3334444445555554444

>PF13041 PPR_2: PPR repeat family

Probab=99.43  E-value=4.1e-13  Score=88.83  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=35.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459          242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN  291 (510)
Q Consensus       242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  291 (510)
                      ||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56677777777777777777777777777777777777777777776653

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.42  E-value=7e-12  Score=124.57  Aligned_cols=91  Identities=20%  Similarity=0.243  Sum_probs=65.1

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459          160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG  239 (510)
Q Consensus       160 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  239 (510)
                      .++-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|+-.....+...|+.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            35556677777777777777777777777777777 7777766666667777777777777777766654          


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHH
Q 010459          240 CSPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       240 ~~~~~~~~~~li~~~~~~g~~~~  262 (510)
                       .|...+|+.|..+|.+.||...
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH
Confidence             5666777777777777777665

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.39  E-value=5.3e-11  Score=118.44  Aligned_cols=265  Identities=14%  Similarity=0.113  Sum_probs=138.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010459          133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY  212 (510)
Q Consensus       133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  212 (510)
                      .|+.|+..||.++|.-||..|+++.|- +|.-|.-.....+...++.++.+..+.++.+.+.           .|-..||
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty   86 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY   86 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence            566666666666666666666666666 6666655555555666666666666666655444           4555666


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHh
Q 010459          213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMN  291 (510)
Q Consensus       213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~  291 (510)
                      +.|..+|...||+..    |+...+        -.-.++..+..+|-...-..++..+. ..+.-||..+   ++.-...
T Consensus        87 t~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~  151 (1088)
T KOG4318|consen   87 TNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVL  151 (1088)
T ss_pred             HHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHH
Confidence            666666666666544    111111        01112222233332222222222211 1112222221   1111122


Q ss_pred             cCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh-hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHH
Q 010459          292 FGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYIK-NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS  369 (510)
Q Consensus       292 ~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  369 (510)
                      .|-++.+.+++..+.... ..|...    .+.-... +..+++....-+...+  .++..++.+.+..-...|+.+.|..
T Consensus       152 eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~  225 (1088)
T KOG4318|consen  152 EGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN  225 (1088)
T ss_pred             HHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence            222333333332221100 000000    0110000 0011111111111111  3455555555556666667788888


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCc
Q 010459          370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFD  433 (510)
Q Consensus       370 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~  433 (510)
                      ++.+|.+.|++.+.+-|..||-+   .+...-+..+.+.|.+.|+.|+..|+.--+-.+...|.
T Consensus       226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            89999999998888888888766   78888899999999999999999999888877766544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.36  E-value=4.5e-09  Score=96.39  Aligned_cols=285  Identities=11%  Similarity=0.014  Sum_probs=166.3

Q ss_pred             cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010459          116 SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL  195 (510)
Q Consensus       116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  195 (510)
                      .|++.+|.+....-.+ .+ .-....|..-..+--+.|+.+.+-+.+.+..+.--.++...+-+........|+.+.|.+
T Consensus        97 eG~~~qAEkl~~rnae-~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAE-HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhh-cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            5777777777766543 22 222334555556666667777777777777765334556666666677777777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 010459          196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH-------ITYNLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       196 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~  268 (510)
                      -++++.+.+.. .........++|.+.|++.....++..|.+.|+-.|.       .+|+.++.-....+..+.-...++
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            77777776544 4556677777777777777777777777777654443       345656655555555555444554


Q ss_pred             HHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459          269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE  348 (510)
Q Consensus       269 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  348 (510)
                      ..... .+-+...-.+++.-+.+.|+.++|.++..+..+++..|....   + -...+-++.....+..+.-....+.++
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p  328 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDP  328 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence            44322 222444555666677777777777777777777666555111   1 112233444444444444444445555


Q ss_pred             HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       349 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      ..+.++...|.+++.+.+|.+.|+...+  ..|+..+|+-+-.++.+.|+..+|.+.+++-.
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            5555555555555555555555553333  24455555555555555555555555555443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=6.3e-09  Score=96.95  Aligned_cols=312  Identities=10%  Similarity=-0.014  Sum_probs=222.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCC
Q 010459          182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLLIQEFACAGL  259 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~  259 (510)
                      .++-.....++++.=.+.....|+.-+...-+....+.....+++.|+.+|+++.+...-  -|..+|+.++  |+++..
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence            445555567777777777777776545444444445555677888888888888876211  2566777665  344433


Q ss_pred             HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459          260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD  339 (510)
Q Consensus       260 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  339 (510)
                      ..-+.---.-..-...+|  .|...+.+-|+-.++.++|...|++..+.+ +.....++.+-.-|....+...|....+.
T Consensus       313 skLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  313 SKLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             HHHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            222211111111222333  366667778888889999999999998876 34556778888889999999999999999


Q ss_pred             HHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH
Q 010459          340 LASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV  419 (510)
Q Consensus       340 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  419 (510)
                      .....+.|-..|..+..+|...+-+.-|+-.|++..+..+. |...|.+|-..|.+.++.++|++.|......| ..+..
T Consensus       390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~  467 (559)
T KOG1155|consen  390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS  467 (559)
T ss_pred             HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence            99999999999999999999999999999999998886554 88999999999999999999999999998765 23667


Q ss_pred             HHHHHHHhhhhcCccchHHHHHHHcCCc----ccccc--ccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHH
Q 010459          420 TIGILYDARRIGFDGTGALEMWKRIGFL----FKTVE--INTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQN  493 (510)
Q Consensus       420 t~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  493 (510)
                      .+..|-+.+.+-++.++|...+++....    +...+  ...-..|-.-+.+++++++|..........  .+...-=++
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~  545 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKA  545 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHH
Confidence            8889999999999999998888765221    11111  111122345677889999988766665542  444444467


Q ss_pred             HHHHHHhcC
Q 010459          494 LIDLVIKHN  502 (510)
Q Consensus       494 li~~~~~~g  502 (510)
                      |++.+.+..
T Consensus       546 LlReir~~~  554 (559)
T KOG1155|consen  546 LLREIRKIQ  554 (559)
T ss_pred             HHHHHHHhc
Confidence            777776654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=3e-08  Score=91.12  Aligned_cols=291  Identities=11%  Similarity=0.028  Sum_probs=212.9

Q ss_pred             HHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459          145 IIGMLCE--EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY  222 (510)
Q Consensus       145 li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  222 (510)
                      +..+..+  .|++..|++...+-.+.+-. ....|-.-..+.-+.|+.+.+-.++.+.-+.--.++...+-+........
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            4444444  59999999999988777643 45566677778888999999999999998765567777888888888999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCCh
Q 010459          223 KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-------STMVAILDAYMNFGML  295 (510)
Q Consensus       223 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~  295 (510)
                      |+.+.|..-.+++.+.+ +.+.........+|.+.|++.....+...|.+.|.--|+       .+|..+++-+...+..
T Consensus       167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~  245 (400)
T COG3071         167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS  245 (400)
T ss_pred             CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999988776 557788889999999999999999999999998865443       5788888877777777


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHH
Q 010459          296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREME  375 (510)
Q Consensus       296 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  375 (510)
                      +.-...++...+. ..-++....+++.-+..+|..++|.++..+..+....+.   -.....+..-++.+.-.+..++..
T Consensus       246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l  321 (400)
T COG3071         246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWL  321 (400)
T ss_pred             hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHH
Confidence            7666666665432 244566777788888888888888888766655443333   122234444555555555555544


Q ss_pred             HCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          376 SAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       376 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      +.... +.-.+.+|-..|.+++.|.+|...|+...+  ..|+..+|+-+-+++.+.|+..+|.+..++.
T Consensus       322 ~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         322 KQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             HhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            43222 336667777778888888888888886655  3578888888888888888877777777654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=6.3e-10  Score=108.17  Aligned_cols=279  Identities=10%  Similarity=0.024  Sum_probs=196.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHH-HHH
Q 010459          154 LMEEAVRAFQEMEGFALKPSL-EIYNSIIHGYSKIGKFNEALLFLNEMKEMN--LSPQSDTYDGLIQAYGKYKMYD-EID  229 (510)
Q Consensus       154 ~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~-~a~  229 (510)
                      +..+|...|...+..  .+|. .+..-+-.+|...+++++|.++|+..++..  ..-+...|.+.+-.+-+.-.+. .|.
T Consensus       334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq  411 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ  411 (638)
T ss_pred             HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence            567888888886654  3343 455567788888889999999998887643  1226778888776543322111 122


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       230 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      .+.+..     +-...+|.++-.+|.-.++.+.|++.|++..+.+.. ..++|+.+-.-+.....+|.|...|+..+   
T Consensus       412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al---  482 (638)
T KOG1126|consen  412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL---  482 (638)
T ss_pred             HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence            232222     346788999999999999999999999888876322 56788888777888888888888887664   


Q ss_pred             CCCCHHHHHH---HHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHH
Q 010459          310 TPLKEDLVRK---LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA  386 (510)
Q Consensus       310 ~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  386 (510)
                       ..|+..|++   |.-.|.|.++++.|+-.++......+.+.+....+...+-+.|+.++|++++++....... |...-
T Consensus       483 -~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~  560 (638)
T KOG1126|consen  483 -GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK  560 (638)
T ss_pred             -cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence             455666665   4556788888888888888888888888888888888888888888888888887776655 44443


Q ss_pred             HHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHH-HHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459          387 NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-IGILYDARRIGFDGTGALEMWKRIGFL  447 (510)
Q Consensus       387 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~~~~~~~~~  447 (510)
                      --....+...++.++|+..++++++  +.|+..+ |..+...|.+-|+.+.|+.-|-.+...
T Consensus       561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            3445556667888888888888876  4566544 555555777778888887777766444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=8.9e-10  Score=107.13  Aligned_cols=285  Identities=11%  Similarity=0.056  Sum_probs=224.8

Q ss_pred             CCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCh-HHHH
Q 010459          118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL--KPSLEIYNSIIHGYSKIGKF-NEAL  194 (510)
Q Consensus       118 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~-~~a~  194 (510)
                      +.++|...|.....  ...-..++..-+-.+|-..+++++|.++|+...+...  ..+...|.+.+-.+-+.=.+ -.|.
T Consensus       334 ~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq  411 (638)
T KOG1126|consen  334 NCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ  411 (638)
T ss_pred             HHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence            56788888887442  3333346777888999999999999999999987631  23677888888655332111 1222


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       195 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      ++.+.+     +-.+.||.++-++|+-+++.+.|.+.|++..+.. +....+|+.+-.-+.....+|.|...|+......
T Consensus       412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            233222     2356899999999999999999999999998764 3378899888888999999999999999877542


Q ss_pred             CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHH
Q 010459          275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR  354 (510)
Q Consensus       275 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  354 (510)
                      .+ +-..|..+-..|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|..++|.++++......+.++..-.-.
T Consensus       486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            11 23455567788999999999999999988765 44666777888889999999999999999999999999888888


Q ss_pred             HHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC
Q 010459          355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH  413 (510)
Q Consensus       355 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  413 (510)
                      +..+...++.++|+..++++++.-++ +...|-.+...|-+.|+.+.|+.-|--+.+..
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            88999999999999999999986443 66778888889999999999999999888743

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.29  E-value=3.6e-07  Score=88.97  Aligned_cols=391  Identities=6%  Similarity=-0.072  Sum_probs=267.0

Q ss_pred             ccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010459           97 HDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL  174 (510)
Q Consensus        97 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~  174 (510)
                      .|...+...|-.=...|-..|..--+..+...... -|+.  --..+|+.-...|.+.+.++-|+.+|....+-- +.+.
T Consensus       473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~  550 (913)
T KOG0495|consen  473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKK  550 (913)
T ss_pred             cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchh
Confidence            34455555555555566666666666555555543 2322  122466667777777777777777777766542 3356


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF  254 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  254 (510)
                      ..|......=-..|..++-..+|++....-. -...-|-....-+...|++..|..++.+.-+... -+...|-+-+..-
T Consensus       551 slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle  628 (913)
T KOG0495|consen  551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLE  628 (913)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHh
Confidence            6777777766677777888888888776532 2455566666667777888888888888877652 3777888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459          255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD  334 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  334 (510)
                      ..+..++.|..+|.+....  .|+...|.--+..-.-.+..++|.+++++.++.- +.-...|-.+-..+-+.++++.+.
T Consensus       629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHH
Confidence            8888888888888877654  4566666665666666788888888888877653 223445666777777778888888


Q ss_pred             HHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC
Q 010459          335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV  414 (510)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  414 (510)
                      ..+..=....+...-.|-.+...--..|..-.|..++++-+-+++. |...|-..|..=.+.|..+.|..+..+..+. .
T Consensus       706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c  783 (913)
T KOG0495|consen  706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-C  783 (913)
T ss_pred             HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence            7766666666777888888888888888888888898888887766 7888888888888999999888887777653 2


Q ss_pred             CCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCc-ccHHH
Q 010459          415 KPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKR-WTYQN  493 (510)
Q Consensus       415 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~  493 (510)
                      .-+...|..-|....+.++-......+++...     +....-.+...|-....++.|.+.|++..+  +.||. -+|.-
T Consensus       784 p~sg~LWaEaI~le~~~~rkTks~DALkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~  856 (913)
T KOG0495|consen  784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAW  856 (913)
T ss_pred             CccchhHHHHHHhccCcccchHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHH
Confidence            23445666666666666666666666555422     222333334455556677788888877766  34443 26666


Q ss_pred             HHHHHHhcCC
Q 010459          494 LIDLVIKHNG  503 (510)
Q Consensus       494 li~~~~~~g~  503 (510)
                      +..-+.++|.
T Consensus       857 fykfel~hG~  866 (913)
T KOG0495|consen  857 FYKFELRHGT  866 (913)
T ss_pred             HHHHHHHhCC
Confidence            7777777774

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.29  E-value=3.3e-09  Score=96.17  Aligned_cols=198  Identities=10%  Similarity=0.026  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      ..+..+...+...|++++|.+.++...+  ..+.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALE--HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            3445555666666666666666665543  122334555556666666666666666666665543 2244555556666


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  262 (510)
                      +...|++++|.+.|++.......| ....+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            666666666666666665432111 23344455555666666666666666655442 2234455555566666666666


Q ss_pred             HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      |.+.+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            66666665544 22234444455555555666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=2e-08  Score=89.60  Aligned_cols=224  Identities=13%  Similarity=0.110  Sum_probs=149.0

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHH
Q 010459          106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL------EIYNS  179 (510)
Q Consensus       106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~  179 (510)
                      |..=++.+. ..+.++|.++|-.|.+  .-+-...+--+|-+.|-+.|.+|.|+++...+.++   ||.      ...-.
T Consensus        39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q  112 (389)
T COG2956          39 YVKGLNFLL-SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ  112 (389)
T ss_pred             HHhHHHHHh-hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence            333334333 3578888888888874  33334445556777888888888888888887753   442      23445


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 010459          180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD----HITYNLLIQEFA  255 (510)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~  255 (510)
                      |-.-|...|-+|+|..+|..+.+.|.- -......|+..|-+..+|++|..+-+++.+.+-.+.    ...|.-+...+.
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~  191 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence            666677788888888888888765432 345667788888888888888888888876654433    223445555555


Q ss_pred             HcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHH
Q 010459          256 CAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD  335 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  335 (510)
                      ...+.+.|..++.+..+.+.+ .+..--.+-+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...
T Consensus       192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            667788888888877766422 2223334556677788888888888888877655555666777777777777666555


Q ss_pred             HH
Q 010459          336 LG  337 (510)
Q Consensus       336 ~~  337 (510)
                      .+
T Consensus       271 fL  272 (389)
T COG2956         271 FL  272 (389)
T ss_pred             HH
Confidence            53

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.28  E-value=6.1e-08  Score=97.62  Aligned_cols=352  Identities=9%  Similarity=0.043  Sum_probs=258.2

Q ss_pred             hHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 010459           75 QALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL  154 (510)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  154 (510)
                      |+.+++.+.+.       .+.+.. +.+...|.++-..|-+.|+.+++...+-...  +-.+-|...|-.+-+...+.|+
T Consensus       153 g~~eeA~~i~~-------EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~  222 (895)
T KOG2076|consen  153 GDLEEAEEILM-------EVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGN  222 (895)
T ss_pred             CCHHHHHHHHH-------HHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhccc
Confidence            67777777766       333332 3355688999999999999999988776554  4556677899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHHHHHH
Q 010459          155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQAYGKYKMYDEIDM  230 (510)
Q Consensus       155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----~li~~~~~~g~~~~a~~  230 (510)
                      ++.|.-.|.+..+.. +++...+---+..|-+.|+...|.+.|.++.......|..-+.    ..+..+...++-+.|.+
T Consensus       223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999875 3355555556678899999999999999998865432333333    34556777788899999


Q ss_pred             HHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------ccCHHHH
Q 010459          231 CLKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM---------------------------HLRSSTM  282 (510)
Q Consensus       231 ~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~~t~  282 (510)
                      .++..... +-..+...++.++..|.+...++.|......+.....                           .++... 
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-  380 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-  380 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence            99887762 2245667788999999999999999999888866211                           122222 


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC-CchHHHHHHHHHhh
Q 010459          283 VAILDAYMNFGMLDKMEKFYKRLLNSRT--PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG-RTELVWCLRLLSHA  359 (510)
Q Consensus       283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~  359 (510)
                      --+.-++.+....+...-+...+.+..+  .-+...|.-+.++|...|.+.+|.+++..+.+.++ .+...|.-+...|.
T Consensus       381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM  460 (895)
T ss_pred             HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence            1223334455666666666666666663  34567888999999999999999999988886654 45788999999999


Q ss_pred             hhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh--------CCCCCCHHHHHHHHHhhhhc
Q 010459          360 CLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT--------RHVKPDIVTIGILYDARRIG  431 (510)
Q Consensus       360 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~li~~~~~~  431 (510)
                      ..|..+.|.+.|+......+. +...-..|-..+-+.|+.++|.+.+..|..        .+..|+.....-..+.+.+.
T Consensus       461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            999999999999999887544 555666677788999999999999999752        22344444333344455666


Q ss_pred             CccchHHH
Q 010459          432 FDGTGALE  439 (510)
Q Consensus       432 ~~~~~a~~  439 (510)
                      |+.++=+.
T Consensus       540 gk~E~fi~  547 (895)
T KOG2076|consen  540 GKREEFIN  547 (895)
T ss_pred             hhHHHHHH
Confidence            66655433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.28  E-value=1.1e-08  Score=92.64  Aligned_cols=200  Identities=11%  Similarity=0.039  Sum_probs=156.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459          136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL  215 (510)
Q Consensus       136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  215 (510)
                      ......+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~  105 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNY  105 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence            3445678888899999999999999999988764 33577888899999999999999999999887653 356678888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          216 IQAYGKYKMYDEIDMCLKMMKLDGC-SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       216 i~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                      ...+...|++++|.+.|++..+... ......+..+...+...|++++|...+++....... +...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence            8899999999999999999886422 223456777788889999999999999998875422 45677888888999999


Q ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459          295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD  339 (510)
Q Consensus       295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  339 (510)
                      +++|.+.+++..+. .+.+...+..+...+...|+.+.+......
T Consensus       185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999988776 344556666666777777777666655433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=2e-09  Score=99.78  Aligned_cols=389  Identities=12%  Similarity=0.060  Sum_probs=236.9

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHH
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS-QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL------EIYNSI  180 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~l  180 (510)
                      .+.+-|.......+|+..++.+.+ ...-|+.-.. -.+-+.+.+...+..|+..++.....  .|++      -..|.+
T Consensus       206 nlaqqy~~ndm~~ealntyeiivk-nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~ni  282 (840)
T KOG2003|consen  206 NLAQQYEANDMTAEALNTYEIIVK-NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNI  282 (840)
T ss_pred             HHHHHhhhhHHHHHHhhhhhhhhc-ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhc
Confidence            445556666777889999988877 5555655332 22345567788899999998877655  3332      234555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC------------CCHHHHH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS------------PDHITYN  248 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~  248 (510)
                      --.+.+.|.++.|+..|+...+.  .|+-.+--.|+-++...|+-++..+.|..|......            |+....|
T Consensus       283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~  360 (840)
T KOG2003|consen  283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN  360 (840)
T ss_pred             CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence            55688999999999999998775  478777767777788889999999999999753222            3333333


Q ss_pred             HHHH-----HHHHcC--CHHHHHHHHHHHHHCCCccCHHH-------------HH--------HHHHHHHhcCChhHHHH
Q 010459          249 LLIQ-----EFACAG--LLKRMEGTYKSMLTKRMHLRSST-------------MV--------AILDAYMNFGMLDKMEK  300 (510)
Q Consensus       249 ~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t-------------~~--------~ll~~~~~~g~~~~a~~  300 (510)
                      --|.     -.-+.+  +.++++-.-..++.--+.|+-..             +.        .-...+.+.|+++.|.+
T Consensus       361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie  440 (840)
T KOG2003|consen  361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE  440 (840)
T ss_pred             HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence            3222     111111  12222222222222223333100             00        11234678899999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHh------------------------------------hcchhHHHHHHHHHHhhc
Q 010459          301 FYKRLLNSRTPLKEDLVRKLAEVYIK------------------------------------NYMFSRLDDLGDDLASRI  344 (510)
Q Consensus       301 ~~~~m~~~~~~~~~~~~~~li~~~~~------------------------------------~~~~~~a~~~~~~~~~~~  344 (510)
                      +++-+.+..-......-+.|-..+.-                                    +|++++|...++......
T Consensus       441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd  520 (840)
T KOG2003|consen  441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND  520 (840)
T ss_pred             HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence            99988765433322222222222211                                    244444444444333222


Q ss_pred             CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHH
Q 010459          345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGI  423 (510)
Q Consensus       345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~  423 (510)
                      ..-......+...+-..|+.++|++.|-++...-. -+......+.+.|.-..+...|++++.+...  +.| |+...+-
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilsk  597 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSK  597 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHH
Confidence            22222222233345556666777776665543211 2555555666667667777777777655443  344 6677777


Q ss_pred             HHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHH-hcC
Q 010459          424 LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVI-KHN  502 (510)
Q Consensus       424 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g  502 (510)
                      |-..|-+.|+-.+|.+..-.- ....+.+..+..-+..-|....-++.|...|++..-  +.|+..-|-.||..|. +.|
T Consensus       598 l~dlydqegdksqafq~~yds-yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg  674 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDS-YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG  674 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhc-ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence            888888999888888875443 122344555555666778888899999999988765  7999999999997665 556


Q ss_pred             CCCCC
Q 010459          503 GKNLD  507 (510)
Q Consensus       503 ~~~~a  507 (510)
                      ++.+|
T Consensus       675 nyqka  679 (840)
T KOG2003|consen  675 NYQKA  679 (840)
T ss_pred             cHHHH
Confidence            65443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.25  E-value=1.3e-07  Score=91.86  Aligned_cols=362  Identities=9%  Similarity=-0.083  Sum_probs=290.2

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      .||..-...|.+.+.++-|+.+|....  .-++.+...|...+..=-..|..++-..+|.+....- +.....|-....-
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~al--qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake  593 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHAL--QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE  593 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHH--hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence            477788888888889999999998877  4566777888888777777899999999999998763 3466778888888


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM  263 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  263 (510)
                      +...|++..|..++.+.-+.... +...|-+-+..-....+++.|..+|.+....  .|+...|.--+..--..+..++|
T Consensus       594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA  670 (913)
T KOG0495|consen  594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA  670 (913)
T ss_pred             HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence            89999999999999998876544 7788999999999999999999999998875  57888888777777788999999


Q ss_pred             HHHHHHHHHCCCccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459          264 EGTYKSMLTKRMHLRS-STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS  342 (510)
Q Consensus       264 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  342 (510)
                      ++++++..+.  -|+- -.|..+-+.+-+.++++.|++.|..-.+. ++-.+..+-.|.+.=-+.|.+-.|+.++....-
T Consensus       671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            9999888765  3453 45666677788888889888888665443 344567788888888888999999999999999


Q ss_pred             hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHH
Q 010459          343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIG  422 (510)
Q Consensus       343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  422 (510)
                      .++.+...|-..|..-.+.|..+.|..+..+..+.-+. +...|.--|....+.++--.....+++-.     -|+....
T Consensus       748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVll  821 (913)
T KOG0495|consen  748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLL  821 (913)
T ss_pred             cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHH
Confidence            99999999999999999999999999988887776433 67788888887777777555555444333     3666666


Q ss_pred             HHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       423 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      ++-..+-....++.|.+.|.+....+. ..-..|..+...+.++|.-++-.+++.....
T Consensus       822 aia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  822 AIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            666677777789999999998754433 2345677888888999988888888887776

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=4.1e-07  Score=85.31  Aligned_cols=374  Identities=12%  Similarity=0.045  Sum_probs=250.6

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      .|-..+.+=.++..+..|+.+|++...  -++.--..|--.+.+=-..|++..|.++|+.-.+.  +|+...|++.|+-=
T Consensus       109 LWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fE  184 (677)
T KOG1915|consen  109 LWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFE  184 (677)
T ss_pred             HHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Confidence            444566666777888888888887763  22322345556666666778888888888887765  78888888888888


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GC-SPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~  262 (510)
                      .+-+..+.|.+++++.+-  +.|++.+|--....=-++|.+..|.++|+...+. |- .-+...+++...-=.++..++.
T Consensus       185 lRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER  262 (677)
T KOG1915|consen  185 LRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER  262 (677)
T ss_pred             HHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888766  4588888877777777778887777777766542 10 0122233333222223333333


Q ss_pred             HHHHHHH--------------------------------------------HHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459          263 MEGTYKS--------------------------------------------MLTKRMHLRSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       263 A~~~~~~--------------------------------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      |.-+|+-                                            +... -+.|-.+|-..++.-...|+.+..
T Consensus       263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~I  341 (677)
T KOG1915|consen  263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRI  341 (677)
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHH
Confidence            3333321                                            1111 123556677777777788999999


Q ss_pred             HHHHHHHHhcCCCCCH--HHHHHHHHH--------HHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhh----hhccc
Q 010459          299 EKFYKRLLNSRTPLKE--DLVRKLAEV--------YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA----CLLSH  364 (510)
Q Consensus       299 ~~~~~~m~~~~~~~~~--~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~  364 (510)
                      +++|++.+..- +|-.  ..+.-.|-.        =....+++...++++......+....++.-+=..|+    ++.+.
T Consensus       342 re~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l  420 (677)
T KOG1915|consen  342 RETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL  420 (677)
T ss_pred             HHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc
Confidence            99999988643 4421  111111111        123467778888888877777777666655544444    55677


Q ss_pred             ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHH
Q 010459          365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKR  443 (510)
Q Consensus       365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~  443 (510)
                      ..|.+++....  |..|-..+|-..|..=.+.+.+|....+++..++.+  | |-.+|.-.-..-...|+.+.|..+|.-
T Consensus       421 ~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifel  496 (677)
T KOG1915|consen  421 TGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAIFEL  496 (677)
T ss_pred             HHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            88888888765  556788899999998899999999999999999863  5 446666665555667899999999987


Q ss_pred             cCCccccccccChhHHHHHh----hccCchhHHHHHHhhcCCCCCCCCcccHHHHH
Q 010459          444 IGFLFKTVEINTDPLVLAVY----GKGHFLRYCEEVYSSLEPYSREKKRWTYQNLI  495 (510)
Q Consensus       444 ~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  495 (510)
                      ....   |....-..|+.+|    ...|.++.|..+++++++.  .+-..+|-++.
T Consensus       497 Ai~q---p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA  547 (677)
T KOG1915|consen  497 AISQ---PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA  547 (677)
T ss_pred             HhcC---cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence            7544   3344444555555    4689999999999999984  33333555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=1.7e-08  Score=90.00  Aligned_cols=222  Identities=10%  Similarity=0.016  Sum_probs=114.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHH
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ---SDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a  228 (510)
                      +.+.++|.+.|-+|.+... -+..+--+|-+.|-+.|..++|+++.+.+.+..--+.   ....-.|-.-|.+.|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            3566777777777775321 1333445666777777777777777777655421111   11223444556666777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 010459          229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS----STMVAILDAYMNFGMLDKMEKFYKR  304 (510)
Q Consensus       229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~  304 (510)
                      +.+|..+.+.+ .--.....-|+..|-...+|++|+++-+++.+.+-.+..    .-|--+...+....+++.|..++++
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            77777776544 233445566677777777777777777766665544332    2233344444445566666666666


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC-chHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459          305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR-TELVWCLRLLSHACLLSHRGIDSVVREMES  376 (510)
Q Consensus       305 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  376 (510)
                      ..+.+ +-.+..-..+-+.+...|++..|.+.++.+...++. -..+...+..+|...|+.++....+.++.+
T Consensus       206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            65543 112222233444444445444444443333322211 123333333444444444444444443333

>PRK12370 invasion protein regulator; Provisional

Probab=99.24  E-value=6.4e-09  Score=106.57  Aligned_cols=178  Identities=13%  Similarity=0.024  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459          155 MEEAVRAFQEMEGFALKP-SLEIYNSIIHGYS---------KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM  224 (510)
Q Consensus       155 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  224 (510)
                      +++|...|++..+.  .| +...|..+..+|.         ..++.++|...+++..+.+.. +..++..+-..+...|+
T Consensus       277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence            45556666655544  22 2333433333322         112345555555555554322 44455555555555555


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459          225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR  304 (510)
Q Consensus       225 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  304 (510)
                      +++|...|++..+.. +.+...|..+...+...|++++|...+++..+.... +...+..++..+...|++++|.+.+++
T Consensus       354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            666666665555443 223444555555555556666666665555544322 111122223334445555555555555


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH
Q 010459          305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG  337 (510)
Q Consensus       305 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  337 (510)
                      ..+...+-++..+..+...|...|++++|...+
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~  464 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLT  464 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            543321112223333444444444444444443

>PRK12370 invasion protein regulator; Provisional

Probab=99.24  E-value=1.6e-08  Score=103.70  Aligned_cols=226  Identities=8%  Similarity=-0.111  Sum_probs=160.5

Q ss_pred             CChhhHHHHHHHHHhc-----CCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNS-----SRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCE---------EGLMEEAVRAFQEM  165 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m  165 (510)
                      .+...|...+++-...     +..++|.+.|+...+   ..| +...|..+..+|..         .+++++|...+++.
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            4556666676664322     335688889988764   344 34556555554442         34589999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H
Q 010459          166 EGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD-H  244 (510)
Q Consensus       166 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~  244 (510)
                      .+.+ +-+...|..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+..  |+ .
T Consensus       331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~  406 (553)
T PRK12370        331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRA  406 (553)
T ss_pred             HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCh
Confidence            9875 337788888988999999999999999999886532 56678889999999999999999999998774  43 3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010459          245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY  324 (510)
Q Consensus       245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  324 (510)
                      ..+..+...+...|++++|...+++......+-+...+..+..++...|+.++|.+.+.++.... +.+....+.+...|
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~  485 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY  485 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence            33344455577789999999999998765322234456667788889999999999998875542 22233344555555


Q ss_pred             HhhcchhHHHHH
Q 010459          325 IKNYMFSRLDDL  336 (510)
Q Consensus       325 ~~~~~~~~a~~~  336 (510)
                      ...|  +.+...
T Consensus       486 ~~~g--~~a~~~  495 (553)
T PRK12370        486 CQNS--ERALPT  495 (553)
T ss_pred             hccH--HHHHHH
Confidence            6555  244443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=4e-08  Score=91.73  Aligned_cols=254  Identities=11%  Similarity=0.009  Sum_probs=139.1

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK--PSLEIYNSIIHGYSKIGK  189 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~  189 (510)
                      ++......+++.+-.+.... .|++-+...-+-...+.-...|++.|+.+|+++.+...-  -|..+|..++..--...+
T Consensus       236 a~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            34444445555554444443 444444443333444444556666666666666655311  144555555433222111


Q ss_pred             hH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459          190 FN-EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       190 ~~-~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  268 (510)
                      +. .|..++.   -...+  +.|...+.+-|+-.++.++|...|++..+.+ +.....|+.|-.-|...++...|.+-++
T Consensus       315 Ls~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  315 LSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             HHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            11 1111111   11122  2355666666666667777777777766554 3355666666667777777777777776


Q ss_pred             HHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459          269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE  348 (510)
Q Consensus       269 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  348 (510)
                      ...+-... |-..|-.+-++|.-.+.+.-|+-.|++..+.. +-|...+.+|-+.|.+.++.++|.+.+...........
T Consensus       389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence            66654322 55666667777777777666666666665543 34566666666666666666666666655554444445


Q ss_pred             HHHHHHHHHhhhhcccccHHHHHHHH
Q 010459          349 LVWCLRLLSHACLLSHRGIDSVVREM  374 (510)
Q Consensus       349 ~~~~~li~~~~~~~~~~~a~~~~~~m  374 (510)
                      ..+..+...|-..++.++|...|++-
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~  492 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKY  492 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            55555555666666655555555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=4.8e-07  Score=84.90  Aligned_cols=364  Identities=12%  Similarity=0.049  Sum_probs=250.7

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-EIYNSIIHG  183 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~  183 (510)
                      .|-....-=-..+++..|+.+|++..  .+-..+...|--.+.+=.++..+..|..+|++....  -|-+ ..|---+..
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERAL--dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERAL--DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHH--hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence            44444444455778889999999887  455778889999999999999999999999998765  3333 456666666


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM  263 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  263 (510)
                      =-..|++..|.++|++-.+  ..||...|++.|+.=.+-+.++.|..++++..--  .|++.+|--....=.++|....|
T Consensus       151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a  226 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA  226 (677)
T ss_pred             HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence            6678999999999998766  6799999999999999999999999999998754  69999999998888999999999


Q ss_pred             HHHHHHHHHC-CC-ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhhcchhHHHHHH--
Q 010459          264 EGTYKSMLTK-RM-HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK--EDLVRKLAEVYIKNYMFSRLDDLG--  337 (510)
Q Consensus       264 ~~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~--  337 (510)
                      ..+|....+. |- ..+...|.+...-=.....++.|.-+|+..+++- +.+  ...|..+...=-+-|+.....+..  
T Consensus       227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            9999887643 21 1133445555555556778899999999888653 222  445555555555556544443332  


Q ss_pred             ------HHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc-CH-HHHH--------HHHHHHHcCCChhH
Q 010459          338 ------DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW-NV-TTAN--------IILLAYLKMKDFKH  401 (510)
Q Consensus       338 ------~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~-~~~~--------~li~~~~~~g~~~~  401 (510)
                            ....+..+-+-.+|--.+..--..|+.+...++|++.... ++| .. ..|.        -.+-.=....+++.
T Consensus       306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er  384 (677)
T KOG1915|consen  306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER  384 (677)
T ss_pred             hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence                  3344667778888888888888889999999999988865 333 21 1111        11111134677888


Q ss_pred             HHHHHHhhhhCCCCCCHHHHHHHHHhh----hhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHh
Q 010459          402 LRVLLSELPTRHVKPDIVTIGILYDAR----RIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYS  477 (510)
Q Consensus       402 A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  477 (510)
                      +.++|+..++. |+...+||.-+=-.|    .++.++..|.+++.....  ..|....+.-.|..=.+.+.++.+.++++
T Consensus       385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            88888777762 333456665443332    345566666666654421  12333444444444445555666666666


Q ss_pred             hcCC
Q 010459          478 SLEP  481 (510)
Q Consensus       478 ~m~~  481 (510)
                      +.++
T Consensus       462 kfle  465 (677)
T KOG1915|consen  462 KFLE  465 (677)
T ss_pred             HHHh
Confidence            5555

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=5.3e-07  Score=84.96  Aligned_cols=364  Identities=10%  Similarity=-0.031  Sum_probs=244.0

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-EIYNSIIHGYS  185 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~  185 (510)
                      ..-+-|.++|++++|.+.+.+...   ..|| +.-|...-.+|...|+|+.+.+--....+.  .|+- -.+.---+++-
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE  194 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence            445568889999999999998864   5677 777888999999999999988877777654  3332 23333334444


Q ss_pred             hcCChHHHH----------------------HHHHH---------HHHC--CCCCCHHHHHHHHHHHHcc----------
Q 010459          186 KIGKFNEAL----------------------LFLNE---------MKEM--NLSPQSDTYDGLIQAYGKY----------  222 (510)
Q Consensus       186 ~~g~~~~a~----------------------~~~~~---------m~~~--g~~p~~~t~~~li~~~~~~----------  222 (510)
                      +.|++++|+                      +++..         |.+.  .+.|......+....+...          
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            555555443                      22211         1111  1334444333333332211          


Q ss_pred             ---------------C---CHHHHHHHHHHHHh---CCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          223 ---------------K---MYDEIDMCLKMMKL---DGCSPD---------HITYNLLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       223 ---------------g---~~~~a~~~~~~m~~---~g~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                                     +   .+.+|...+.+-..   .....+         ..+...--..+.-.|+...|..-|+..+.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                           0   12222222222110   001112         22222222335567999999999999998


Q ss_pred             CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459          273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC  352 (510)
Q Consensus       273 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  352 (510)
                      ....++.. |.-+..+|....+.++....|....+.+ +-++.+|-.--.++.-.+++++|..-|+...+..+.+...+-
T Consensus       355 l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i  432 (606)
T KOG0547|consen  355 LDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI  432 (606)
T ss_pred             cCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence            76554442 6667778999999999999999988765 446667777777777788899999998888888888888888


Q ss_pred             HHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC-----CCCCHHH--HHHHH
Q 010459          353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH-----VKPDIVT--IGILY  425 (510)
Q Consensus       353 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t--~~~li  425 (510)
                      .+..+..+.+.++++...|++..++= +--+..|+.....+...++++.|.+.|+..++..     +..+..+  -..++
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l  511 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL  511 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence            88888888899999999999988763 3356788888889999999999999999987531     1112222  12222


Q ss_pred             HhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          426 DARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      . +.-.+++..|.+++++....+++.+ ..+..|...-.+.|++++|.++|++-..
T Consensus       512 ~-~qwk~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  512 V-LQWKEDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             h-hchhhhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2 2234789999999999876644433 3466677778889999999999987654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=2.7e-08  Score=88.79  Aligned_cols=235  Identities=15%  Similarity=0.114  Sum_probs=133.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 010459          143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY-DGLIQAYGK  221 (510)
Q Consensus       143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~  221 (510)
                      +-+-.+|.+.|.+.+|...|..-.+.  .|-+.||-.|-..|.+..+++.|+.+|.+-++  ..|-.+|| .-+.+.+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence            34445555555555555555555444  44445555555555555555555555555433  23333443 233444444


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHH
Q 010459          222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF  301 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~  301 (510)
                      .++.++|.++++...+.. +-++.....+..+|.-.++++.|+..|+++.+.|+. +...|..+--+|.-.+++|-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            555555555555554432 234444444445555555555555555555555544 444455544444455555555444


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc
Q 010459          302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW  381 (510)
Q Consensus       302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  381 (510)
                      |.+....--.|                                ..-..+|..+.......|+...|.+-|+-....+.. 
T Consensus       381 f~RAlstat~~--------------------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-  427 (478)
T KOG1129|consen  381 FQRALSTATQP--------------------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-  427 (478)
T ss_pred             HHHHHhhccCc--------------------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-
Confidence            44443222111                                223456777777777888888888888887776555 


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH
Q 010459          382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI  418 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  418 (510)
                      +...+|.|.-.-.+.|++++|..++....+  +.|+.
T Consensus       428 h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m  462 (478)
T KOG1129|consen  428 HGEALNNLAVLAARSGDILGARSLLNAAKS--VMPDM  462 (478)
T ss_pred             hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCccc
Confidence            667888888778889999999999888765  34554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.02  E-value=4.5e-07  Score=90.24  Aligned_cols=290  Identities=12%  Similarity=0.064  Sum_probs=200.4

Q ss_pred             HHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc--
Q 010459          111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEI-YNSIIHGYSKI--  187 (510)
Q Consensus       111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~--  187 (510)
                      ..+...|++++|++.++.-.  ..+.............+.+.|+.++|..+|..+.+.+  |+-.. |..+..+....  
T Consensus        12 ~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence            44678899999999997653  2334445566788899999999999999999999885  44444 44555554222  


Q ss_pred             ---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459          188 ---GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY-DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM  263 (510)
Q Consensus       188 ---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  263 (510)
                         .+.+...++|+++...-  |...+...+.-.+..-..+ ..+...+..+...|+++   +|+.+-..|......+-.
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence               25678888999886654  4333333333223222222 23555666677777653   566666667665555666


Q ss_pred             HHHHHHHHHC----C----------CccCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 010459          264 EGTYKSMLTK----R----------MHLRS--STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN  327 (510)
Q Consensus       264 ~~~~~~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  327 (510)
                      .+++......    +          -.|..  .++.-+...|...|++++|.+..+..+++. +..+..|..-...|-+.
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~  241 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence            6666665432    1          12333  244556777888999999999999888875 33367788888888899


Q ss_pred             cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHH------HH--HHHHHHHHcCCCh
Q 010459          328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVT------TA--NIILLAYLKMKDF  399 (510)
Q Consensus       328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~  399 (510)
                      |++.+|.+...........|-..=+-....+.++|+.++|.+++....+.+..|-..      .|  .-...+|.+.|++
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            999999999888888888887777778888889999999999998888776544322      22  3345588899999


Q ss_pred             hHHHHHHHhhh
Q 010459          400 KHLRVLLSELP  410 (510)
Q Consensus       400 ~~A~~~~~~m~  410 (510)
                      ..|++.|....
T Consensus       322 ~~ALk~~~~v~  332 (517)
T PF12569_consen  322 GLALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHHHH
Confidence            88887666553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=8.1e-07  Score=83.76  Aligned_cols=354  Identities=11%  Similarity=0.039  Sum_probs=237.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH----------
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD-TY----------  212 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~----------  212 (510)
                      .-+-|-++|.+++|++.+.+..+.  .|| .+.|...-.+|...|+|+++.+.-...++.  .|+-+ .+          
T Consensus       121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL  196 (606)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence            334577899999999999999876  788 888999999999999999888766665553  33322 22          


Q ss_pred             ------------HHHHHHHHccCCHHHHHHHHHHH---------HhCC--CCCCHHHHHHHHHHHHH-------------
Q 010459          213 ------------DGLIQAYGKYKMYDEIDMCLKMM---------KLDG--CSPDHITYNLLIQEFAC-------------  256 (510)
Q Consensus       213 ------------~~li~~~~~~g~~~~a~~~~~~m---------~~~g--~~~~~~~~~~li~~~~~-------------  256 (510)
                                  .+++.++....-..-+.++++..         .+.+  +-|+....++..+.+-.             
T Consensus       197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks  276 (606)
T KOG0547|consen  197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS  276 (606)
T ss_pred             ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence                        33333333332223344444332         1111  12333332222222110             


Q ss_pred             ------------cC---CHHHHHHHHHHHHH-CCCccC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          257 ------------AG---LLKRMEGTYKSMLT-KRMHLR-----------SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       257 ------------~g---~~~~A~~~~~~m~~-~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                                  .+   .+..|...+.+-.. .-..++           ..+....-..+.-.|+.-.+.+-|+..++..
T Consensus       277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~  356 (606)
T KOG0547|consen  277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD  356 (606)
T ss_pred             hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence                        11   12222222222111 001111           1222222233445799999999999998876


Q ss_pred             CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHH
Q 010459          310 TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII  389 (510)
Q Consensus       310 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  389 (510)
                      ..+ ...|.-+..+|....+-.+....|.......+.++.+|.--...+.-.+++++|..-|++..+..+. +...|..+
T Consensus       357 ~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl  434 (606)
T KOG0547|consen  357 PAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQL  434 (606)
T ss_pred             ccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHH
Confidence            433 3337788888999999999999999999999999999999999999999999999999999887555 67778877


Q ss_pred             HHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccc---cChhHHHH---Hh
Q 010459          390 LLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEI---NTDPLVLA---VY  463 (510)
Q Consensus       390 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~---~~  463 (510)
                      --+.-+.+++++++..|++.+++ +.--...|+..-..+...++++.|.+.++.........+.   ..-+.+-.   .+
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~  513 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL  513 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence            77778999999999999999865 3334678888888999999999999999987444322111   11111111   11


Q ss_pred             hccCchhHHHHHHhhcCCCCCCCCc-ccHHHHHHHHHhcCCCCCC
Q 010459          464 GKGHFLRYCEEVYSSLEPYSREKKR-WTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       464 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a  507 (510)
                      --.+++..|.+++++..+  ++|.. ..|.+|-..-.+.|+.+.|
T Consensus       514 qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eA  556 (606)
T KOG0547|consen  514 QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEA  556 (606)
T ss_pred             chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHH
Confidence            134899999999999988  45543 5788888888888887765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.99  E-value=9.1e-07  Score=88.08  Aligned_cols=289  Identities=13%  Similarity=0.041  Sum_probs=201.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-c--
Q 010459          146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-K--  221 (510)
Q Consensus       146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~--  221 (510)
                      ...+...|++++|++.++.-.+.  .+|.. ........+.+.|+.++|..+|+.+.+.+  ||...|-..+..+. -  
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence            45567889999999999875544  45554 45567788899999999999999999976  56666644444443 2  


Q ss_pred             ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459          222 ---YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL-KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK  297 (510)
Q Consensus       222 ---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  297 (510)
                         ..+.+....+++++.+.-  |.......+.-.+.....+ ..+...+..+...|+++   +|+.|-..|......+-
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~  161 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI  161 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence               235777888899887653  3333333332222222233 34455666777888763   66666666766666666


Q ss_pred             HHHHHHHHHhc----C----------CCCCHH--HHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhh
Q 010459          298 MEKFYKRLLNS----R----------TPLKED--LVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL  361 (510)
Q Consensus       298 a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  361 (510)
                      ..+++......    +          -.|...  ++.-+...|...|++++|...........+..+..|..-...+-..
T Consensus       162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence            66666655432    1          123332  3455677788899999999998888888888888888889999999


Q ss_pred             cccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHH-----HHH---HHHhhhhcCc
Q 010459          362 LSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT-----IGI---LYDARRIGFD  433 (510)
Q Consensus       362 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~---li~~~~~~~~  433 (510)
                      |+.++|.+.++..+..+.. |-..=+-....+.++|++++|.+++....+.+..|-...     ..-   .-.+|.+.|+
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999887665 667777777888999999999999999887665443311     112   2226888888


Q ss_pred             cchHHHHHHHc
Q 010459          434 GTGALEMWKRI  444 (510)
Q Consensus       434 ~~~a~~~~~~~  444 (510)
                      +..|++.|..+
T Consensus       321 ~~~ALk~~~~v  331 (517)
T PF12569_consen  321 YGLALKRFHAV  331 (517)
T ss_pred             HHHHHHHHHHH
Confidence            88888877655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1e-07  Score=85.19  Aligned_cols=229  Identities=13%  Similarity=0.042  Sum_probs=141.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHH
Q 010459          178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN-LLIQEFAC  256 (510)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~  256 (510)
                      +-|-.+|.+.|.+.+|.+.|+.-++.  .|-+.||-.|-..|.+..+.+.|+.+|.+-.+.  .|-.+||- -+...+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence            44566666667777777666666554  234456666666666666677777666665543  34444433 34455555


Q ss_pred             cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459          257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       257 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      .++.++|.++|+...+.. +.+......+...|.-.++++-|...+.++.+.|+. ++..|+                  
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~------------------  362 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFC------------------  362 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHh------------------
Confidence            666666666666665442 114444455555555666666666666666666643 334444                  


Q ss_pred             HHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC
Q 010459          337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWN--VTTANIILLAYLKMKDFKHLRVLLSELPTRHV  414 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  414 (510)
                                      .+...|...++++-++.-|.+....--.|+  ...|-.+-......|++..|.+.|+-....+ 
T Consensus       363 ----------------NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-  425 (478)
T KOG1129|consen  363 ----------------NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-  425 (478)
T ss_pred             ----------------hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-
Confidence                            444444444444555555655554333333  3567777777788999999999999888642 


Q ss_pred             CCCHHHHHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459          415 KPDIVTIGILYDARRIGFDGTGALEMWKRIGFL  447 (510)
Q Consensus       415 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~  447 (510)
                      .-....++.|--.-.+.|++++|..++......
T Consensus       426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            123466777777778999999999999877443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.93  E-value=3.4e-05  Score=75.51  Aligned_cols=430  Identities=9%  Similarity=0.058  Sum_probs=220.3

Q ss_pred             HHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHH
Q 010459           68 VESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKI  145 (510)
Q Consensus        68 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l  145 (510)
                      |.-....++++++-+.+....... ......++.+-..|.-+-...++.-+.-....+=.-|+...+.-+|.  +.|++|
T Consensus       176 ie~L~~~d~~~eaa~~la~vln~d-~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL  254 (835)
T KOG2047|consen  176 IEYLAKSDRLDEAAQRLATVLNQD-EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL  254 (835)
T ss_pred             HHHHHhccchHHHHHHHHHhcCch-hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence            333455666666666665332221 11122222333345544444455444433333333333212233454  568888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------ChHHHHHHHHHHHHC
Q 010459          146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG----------------------KFNEALLFLNEMKEM  203 (510)
Q Consensus       146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~  203 (510)
                      .+.|.+.|.++.|..+|++..+.  ..++.-++.+.++|++-.                      +++-.+.-|+.+.+.
T Consensus       255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r  332 (835)
T KOG2047|consen  255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR  332 (835)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence            88888888888888888876643  223333344444433211                      112222223332222


Q ss_pred             CC-----------CCCH--------------------------------------HHHHHHHHHHHccCCHHHHHHHHHH
Q 010459          204 NL-----------SPQS--------------------------------------DTYDGLIQAYGKYKMYDEIDMCLKM  234 (510)
Q Consensus       204 g~-----------~p~~--------------------------------------~t~~~li~~~~~~g~~~~a~~~~~~  234 (510)
                      +.           .-++                                      ..|..+.+.|-..|+++.|..+|++
T Consensus       333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek  412 (835)
T KOG2047|consen  333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK  412 (835)
T ss_pred             cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            10           0011                                      2335666667777888888888887


Q ss_pred             HHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----------cc-------CHHHHHHHHHHHHhcCC
Q 010459          235 MKLDGCSPD---HITYNLLIQEFACAGLLKRMEGTYKSMLTKRM----------HL-------RSSTMVAILDAYMNFGM  294 (510)
Q Consensus       235 m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p-------~~~t~~~ll~~~~~~g~  294 (510)
                      ..+-..+.-   ..+|......=.+..+++.|+++.+......-          .|       +...|...++.--..|-
T Consensus       413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt  492 (835)
T KOG2047|consen  413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT  492 (835)
T ss_pred             hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            765432211   34565555666667777777777665532111          11       12234444455555677


Q ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc--hHHHHHHHHHhhhh---cccccHHH
Q 010459          295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT--ELVWCLRLLSHACL---LSHRGIDS  369 (510)
Q Consensus       295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~---~~~~~a~~  369 (510)
                      ++....+++.+++..+.....+. ...-.+-.+..++++.++.+.-....+..  -..|++-+.-+...   -..+.|..
T Consensus       493 festk~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd  571 (835)
T KOG2047|consen  493 FESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD  571 (835)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            77788888888776543222222 22222334455666666655444333333  45688766555443   24578899


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHHH--HHcCCChhHHHHHHHhhhhCCCCCCH--HHHHHHHHhhhhcCccchHHHHHHHcC
Q 010459          370 VVREMESAKVRWNVTTANIILLA--YLKMKDFKHLRVLLSELPTRHVKPDI--VTIGILYDARRIGFDGTGALEMWKRIG  445 (510)
Q Consensus       370 ~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~~~  445 (510)
                      +|++..+ |.+|...-+--|+-+  =-+.|....|+.++++... ++.|..  ..|+..|.--...-.+....+++++..
T Consensus       572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI  649 (835)
T KOG2047|consen  572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI  649 (835)
T ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence            9999888 555543322222211  1245888888888888654 355543  457776663222222333344444432


Q ss_pred             CccccccccChhH---HHHHhhccCchhHHHHHHhhcCCC-CCCCCcccHHHHHHHHHhcCCCC
Q 010459          446 FLFKTVEINTDPL---VLAVYGKGHFLRYCEEVYSSLEPY-SREKKRWTYQNLIDLVIKHNGKN  505 (510)
Q Consensus       446 ~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~  505 (510)
                      ..  -|+...-..   ..++=++-|.++.|..++..-.+. ....+..-|.++=.-=.+||+-|
T Consensus       650 e~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  650 ES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             Hh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence            11  022111111   123345678888888888655542 12223335677766667777643

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.93  E-value=2.3e-05  Score=76.17  Aligned_cols=199  Identities=11%  Similarity=-0.041  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      .|..+...+...|+.+.+.+.+....+.....++..- .......+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~   85 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence            4555556666778888887777766543333334322 2223345667899999999999988763 334445553 223


Q ss_pred             HHh----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010459          184 YSK----IGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG  258 (510)
Q Consensus       184 ~~~----~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  258 (510)
                      +..    .+..+.+.+.+..  ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+-..|...|
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence            322    4455555555544  2223333 3344566678889999999999999998875 446677888889999999


Q ss_pred             CHHHHHHHHHHHHHCCC-ccCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          259 LLKRMEGTYKSMLTKRM-HLRS--STMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       259 ~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ++++|...+++...... .|+.  ..|..+...+...|+.++|..+++.....
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            99999999998876532 2332  34667888899999999999999998643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.3e-06  Score=82.21  Aligned_cols=265  Identities=10%  Similarity=-0.022  Sum_probs=191.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      |....-.-.+-+-..+++.+.+++++...+.. ++....+-.=|..+.+.|+-.+-..+=.++.+.- +...++|-++--
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence            33344444555667788888888888887653 3344555566667788887777666667777653 446788888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcch
Q 010459          253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLVRKLAEVYIKNYMF  330 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~  330 (510)
                      -|.-.|..++|.+.|.+-...+.. =...|...-..|+-.|..|+|...+...-+.  |. .-+..|  +---|.+.+++
T Consensus       321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LY--lgmey~~t~n~  396 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLY--LGMEYMRTNNL  396 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHH--HHHHHHHhccH
Confidence            888889999999998876654321 2357777888888888889988888776652  21 112233  23356778888


Q ss_pred             hHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC--CCCc----CHHHHHHHHHHHHcCCChhHHHH
Q 010459          331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA--KVRW----NVTTANIILLAYLKMKDFKHLRV  404 (510)
Q Consensus       331 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~  404 (510)
                      ..|.+.+.+.....+.++...+-+.......+.+.+|...|+.....  .+.+    -.-+++.|-.+|.+.+++++|+.
T Consensus       397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            89999999888999999999888888888888888999888876621  1111    23456777778889999999999


Q ss_pred             HHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          405 LLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       405 ~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      .|++.... .+-+..|+.++--.+...|+++.|++.|.+.
T Consensus       477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa  515 (611)
T KOG1173|consen  477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA  515 (611)
T ss_pred             HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            99888753 1236677777777788888999999988876

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=3.5e-06  Score=81.03  Aligned_cols=285  Identities=14%  Similarity=0.028  Sum_probs=223.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459          134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD  213 (510)
Q Consensus       134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  213 (510)
                      +..-+....-.-.+-+-..+++.+..++++...+.. +++...+..=|.++...|+..+-..+=.+|++.- +-...+|-
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~  316 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF  316 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence            344555666667777778899999999999998764 5667777777888999999888887777887764 33678999


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCccCHHHHHHHHHHHHh
Q 010459          214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMN  291 (510)
Q Consensus       214 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~  291 (510)
                      ++-.-|.-.|+.++|.+.|.+..... +.-...|-..-..|+-.|..|+|+..+...-+.  |.. -+.-|..  --|.+
T Consensus       317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlg--mey~~  392 (611)
T KOG1173|consen  317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLG--MEYMR  392 (611)
T ss_pred             hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHH--HHHHH
Confidence            99999999999999999999877543 234568999999999999999999988766542  321 1233433  34778


Q ss_pred             cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhh-------cCCchHHHHHHHHHhhhhccc
Q 010459          292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR-------IGRTELVWCLRLLSHACLLSH  364 (510)
Q Consensus       292 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~  364 (510)
                      .+..+.|.+.|.+..... +.|+.+.+-+--..-+.+.+.+|...|+.....       ......+|+.+..+|.+.+..
T Consensus       393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            899999999999887543 557778888877777888899999888766511       112355678888899999999


Q ss_pred             ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459          365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR  428 (510)
Q Consensus       365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~  428 (510)
                      ++|+..|++......+ |..++.++.-.|...|.++.|.+.|.+..-  +.||..+...++..+
T Consensus       472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence            9999999998887665 889999999999999999999999998774  679998888887743

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.89  E-value=6.6e-05  Score=73.56  Aligned_cols=368  Identities=9%  Similarity=0.066  Sum_probs=206.4

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA------LKPSLEIYN  178 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~  178 (510)
                      .|.-.+....+.+-++-+..++++..+     .++..-+-.|..+++.+++++|-+.+.......      -+.+...|+
T Consensus       140 IW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~  214 (835)
T KOG2047|consen  140 IWDLYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL  214 (835)
T ss_pred             chHHHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence            344555555556666666666665542     333445666677777777777777776665321      123445566


Q ss_pred             HHHHHHHhcCChH---HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          179 SIIHGYSKIGKFN---EALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       179 ~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      -+-+..+++-+.-   ...++++.+...  -||  ...|++|.+-|.+.|.++.|..+|++..+.  ..++.-|+.+.++
T Consensus       215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~  290 (835)
T KOG2047|consen  215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDA  290 (835)
T ss_pred             HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHH
Confidence            6665555544322   223334443322  233  346788999999999999999999887654  3445555555555


Q ss_pred             HHHcCC----------------------HHHHHHHHHHHHHCCC-----------ccCHHHHHHHHHHHHhcCChhHHHH
Q 010459          254 FACAGL----------------------LKRMEGTYKSMLTKRM-----------HLRSSTMVAILDAYMNFGMLDKMEK  300 (510)
Q Consensus       254 ~~~~g~----------------------~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~g~~~~a~~  300 (510)
                      |++-..                      ++-.+.-|+.+...+.           +-+..+|..-+.  ...|+..+-..
T Consensus       291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~  368 (835)
T KOG2047|consen  291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQIN  368 (835)
T ss_pred             HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHH
Confidence            554221                      1222223333322210           012222322222  22455666666


Q ss_pred             HHHHHHhcCCCC------CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc----hHHHHHHHHHhhhhcccccHHHH
Q 010459          301 FYKRLLNSRTPL------KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT----ELVWCLRLLSHACLLSHRGIDSV  370 (510)
Q Consensus       301 ~~~~m~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~  370 (510)
                      .+.+.++. +.|      -...+..+.+.|-.+|+++.|+.++.+....+-+.    ..+|..-...-.++.+.+.|+++
T Consensus       369 tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l  447 (835)
T KOG2047|consen  369 TYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL  447 (835)
T ss_pred             HHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            66666643 122      12456778888888888888888887776555443    46677777777777778888777


Q ss_pred             HHHHHHCCCC-----------c------CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH--HHHHHHHhhhhc
Q 010459          371 VREMESAKVR-----------W------NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV--TIGILYDARRIG  431 (510)
Q Consensus       371 ~~~m~~~g~~-----------p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~  431 (510)
                      .+......-.           +      ....|...++---..|-++....+++.+.+..+.....  .|..++.   .+
T Consensus       448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---eh  524 (835)
T KOG2047|consen  448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---EH  524 (835)
T ss_pred             HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hh
Confidence            6655432111           1      12345555555556778888888888888755433322  2433333   23


Q ss_pred             CccchHHHHHHHcCCccccc-cccChhHHHHHhhc---cCchhHHHHHHhhcCCCCCCCCc
Q 010459          432 FDGTGALEMWKRIGFLFKTV-EINTDPLVLAVYGK---GHFLRYCEEVYSSLEPYSREKKR  488 (510)
Q Consensus       432 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~  488 (510)
                      .-++++.+.+++=...-..| -...|+.-+.-+.+   .-.++.|..+|++..+ |.+|..
T Consensus       525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~  584 (835)
T KOG2047|consen  525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH  584 (835)
T ss_pred             HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence            34677777777643332222 22334444333322   3467788888888877 566663

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.87  E-value=1.3e-06  Score=86.04  Aligned_cols=240  Identities=14%  Similarity=0.130  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-C
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGF-----AL-KPSLEI-YNSIIHGYSKIGKFNEALLFLNEMKEM-----NL-S  206 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~  206 (510)
                      .+...|..+|...|+++.|+.++....+.     |. .|.+.+ .+.+-..|...+++++|..+|+++..-     |- .
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34445777777777777777777765543     10 122222 223445666667777777777666431     11 1


Q ss_pred             C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 010459          207 P-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGC-SPDH-ITYNLLIQEFACAGLLKRMEGTYKSMLTK---RM  275 (510)
Q Consensus       207 p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~  275 (510)
                      | -..|++.|-..|.+.|++++|...+++..+     .|. .|.+ ..++.+...+...+++++|..+++...+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            1 123445555566777777666665555432     111 1122 12344555566666666666666543321   11


Q ss_pred             ccC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459          276 HLR----SSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT  347 (510)
Q Consensus       276 ~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  347 (510)
                      .++    ..+++.|-..|...|++++|+++|+..++.    +...+..                               .
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~-------------------------------~  408 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG-------------------------------V  408 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh-------------------------------h
Confidence            112    245666666666666666666666665532    1111111                               0


Q ss_pred             hHHHHHHHHHhhhhcccccHHHHHHH----HHHCCC-CcC-HHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          348 ELVWCLRLLSHACLLSHRGIDSVVRE----MESAKV-RWN-VTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       348 ~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      ....+-+...|.+.+..++|.++|.+    |...|+ .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus       409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            12233334444444444555555543    233332 233 4678899999999999999999988765

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.87  E-value=2.9e-06  Score=79.70  Aligned_cols=96  Identities=9%  Similarity=-0.036  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  255 (510)
                      .|..+...|.+.|+.++|...|++..+.... +...|+.+...+...|++++|...|++..+.. +-+..+|..+...+.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3444555555555555555555555553321 34555555555555555555555555555432 123444555555555


Q ss_pred             HcCCHHHHHHHHHHHHHC
Q 010459          256 CAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~~  273 (510)
                      ..|++++|.+.|+...+.
T Consensus       144 ~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            555555555555555543

>PF12854 PPR_1: PPR repeat

Probab=98.86  E-value=3.6e-09  Score=62.78  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=29.7

Q ss_pred             CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          377 AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       377 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      +|+.||..|||+||.+|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4788999999999999999999999999998884

>PF12854 PPR_1: PPR repeat

Probab=98.86  E-value=3.5e-09  Score=62.86  Aligned_cols=30  Identities=40%  Similarity=0.852  Sum_probs=11.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459          171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (510)
                      .||..|||+||++|++.|++++|.++|++|
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            334444444444444444444444443333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.83  E-value=1.9e-06  Score=84.84  Aligned_cols=239  Identities=13%  Similarity=0.094  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhC-----C--CC
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEM-----NL-SPQSDTY-DGLIQAYGKYKMYDEIDMCLKMMKLD-----G--CS  241 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~  241 (510)
                      +...+...|...|+++.|..++++..+.     |. .|...+. +.+-..|...+++++|..+|+++...     |  .+
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3444666666777777777666665443     21 1222222 23445556666666666666665421     1  01


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-ccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCC
Q 010459          242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KRM-HLRS-STMVAILDAYMNFGMLDKMEKFYKRLLNS---RTP  311 (510)
Q Consensus       242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~  311 (510)
                      .-..+++.|-..|.+.|++++|...++...+     .|. .|.. .-++.+...|+..+++++|..++....+.   -..
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            1233444455556666666666555544321     111 1121 23444555555666666666666544321   111


Q ss_pred             CCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC----C--CCc-CHH
Q 010459          312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA----K--VRW-NVT  384 (510)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p-~~~  384 (510)
                      ++.                              .....+++.+...|...|++++|.++|++....    +  ..+ ...
T Consensus       361 ~~~------------------------------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~  410 (508)
T KOG1840|consen  361 EDN------------------------------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK  410 (508)
T ss_pred             ccc------------------------------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence            111                              011233444444455555555555555544322    1  122 245


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHhhhh----CCC-CCCH-HHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          385 TANIILLAYLKMKDFKHLRVLLSELPT----RHV-KPDI-VTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       385 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      .++-|-.+|.+.++.++|.++|.+-..    .|. .|+. .+|..|...|...|++++|.++.+..
T Consensus       411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            677888899999999999999987542    332 2332 56778888899999999998887665

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.82  E-value=5.9e-06  Score=77.68  Aligned_cols=218  Identities=10%  Similarity=-0.021  Sum_probs=152.6

Q ss_pred             CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459          188 GKFNEALLFLNEMKEMN-LSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       188 g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  264 (510)
                      +..+.++.-+.++.... ..|+  ...|..+-..|.+.|+.++|...|++..+.. +.+...|+.+-..+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            45677777777776542 2222  3567788888999999999999999998875 457889999999999999999999


Q ss_pred             HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459          265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI  344 (510)
Q Consensus       265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  344 (510)
                      +.|+...+.... +..+|..+..++...|++++|.+.++...+..  |+..........+...++.++|...+.......
T Consensus       119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            999999876432 46778888888999999999999999998754  433322222223345567888888875544332


Q ss_pred             CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC---C--Cc-CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC
Q 010459          345 GRTELVWCLRLLSHACLLSHRGIDSVVREMESAK---V--RW-NVTTANIILLAYLKMKDFKHLRVLLSELPTRH  413 (510)
Q Consensus       345 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  413 (510)
                      .++  .|.. .......|+...+ +.+..+.+.-   +  .| ....|..+...+.+.|+.++|...|++..+.+
T Consensus       196 ~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        196 DKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             Ccc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            222  2321 2223334555444 3455544321   1  11 23578888889999999999999999998754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=9.9e-05  Score=71.73  Aligned_cols=374  Identities=13%  Similarity=0.066  Sum_probs=192.3

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHH--H
Q 010459          110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI--IHGY--S  185 (510)
Q Consensus       110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--i~~~--~  185 (510)
                      ++.+...|++++|.+.-..+..  +.+-|...+..=+-+..+.+++++|+.+.+.-.      -..+++..  =.+|  -
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEY   90 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHH
Confidence            3445556666666666666652  334445555555666666666666664433211      11122222  2233  3


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC------------------------
Q 010459          186 KIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC------------------------  240 (510)
Q Consensus       186 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------------  240 (510)
                      +.+..++|+..++     |..++ ..+...-...+.+.|++++|..+|+.+.+.+.                        
T Consensus        91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            4566666666665     22222 22444445556666666666666666643321                        


Q ss_pred             ----CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHCC-------------CccCH-HHHHHHHHHHHhcCChhHHH
Q 010459          241 ----SPDHITYNLLI---QEFACAGLLKRMEGTYKSMLTKR-------------MHLRS-STMVAILDAYMNFGMLDKME  299 (510)
Q Consensus       241 ----~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~-~t~~~ll~~~~~~g~~~~a~  299 (510)
                          .| ..+|..+-   -.+...|++.+|+++++.....+             +.-+. ..-.-+.-++-..|+.++|.
T Consensus       166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence                11 22333332   23556788888888887762211             11011 11222344555678888999


Q ss_pred             HHHHHHHhcCCCCCHHH----HHHHHHHHHhhcchh------------------------------------------HH
Q 010459          300 KFYKRLLNSRTPLKEDL----VRKLAEVYIKNYMFS------------------------------------------RL  333 (510)
Q Consensus       300 ~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~------------------------------------------~a  333 (510)
                      +++...++... +|...    .|.|+.+-....-++                                          ..
T Consensus       245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~  323 (652)
T KOG2376|consen  245 SIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM  323 (652)
T ss_pred             HHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            98888877652 33211    122222111111111                                          00


Q ss_pred             HHHHHHHHhhcCCc-hHHHHHHHHHhhhh-c-ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHH---
Q 010459          334 DDLGDDLASRIGRT-ELVWCLRLLSHACL-L-SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS---  407 (510)
Q Consensus       334 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~---  407 (510)
                      ..+.+.....++.. ...+.+++...... . ....+.+++....+....-...+.-.++......|+++.|.+++.   
T Consensus       324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~  403 (652)
T KOG2376|consen  324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL  403 (652)
T ss_pred             HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            00000011112211 23333333322222 2 245566666666555433234455566677788999999999999   


Q ss_pred             -----hhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcC------CccccccccChhHHHHHhhccCchhHHHHHH
Q 010459          408 -----ELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIG------FLFKTVEINTDPLVLAVYGKGHFLRYCEEVY  476 (510)
Q Consensus       408 -----~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  476 (510)
                           ...+.+-.|..+  .+++..+.+.++.+.|..++.+..      ..+...-..++.-....=-++|..++|..++
T Consensus       404 ~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l  481 (652)
T KOG2376|consen  404 ESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL  481 (652)
T ss_pred             hhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence                 566555555544  445555556655555555444331      1111111112222233345679999999999


Q ss_pred             hhcCCCCCCCCcccHHHHHHHHHhc
Q 010459          477 SSLEPYSREKKRWTYQNLIDLVIKH  501 (510)
Q Consensus       477 ~~m~~~g~~p~~~~~~~li~~~~~~  501 (510)
                      +++.+. .++|..+...++.+|++.
T Consensus       482 eel~k~-n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  482 EELVKF-NPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHHHHh-CCchHHHHHHHHHHHHhc
Confidence            999984 355667778899998875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.79  E-value=7.6e-05  Score=73.26  Aligned_cols=360  Identities=13%  Similarity=0.043  Sum_probs=198.4

Q ss_pred             HhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010459          114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA  193 (510)
Q Consensus       114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a  193 (510)
                      ...|+.++|.+..+.-.  .+-..+.+.|..+--.+-...++++|+..|....+.+ +-|...|.-+--.-++.++++..
T Consensus        52 ~~lg~~~ea~~~vr~gl--r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGL--RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             hcccchHHHHHHHHHHh--ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence            34566777776666444  2344556677777666666777788888777777664 33566677666666677777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHH
Q 010459          194 LLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHITYNLLI------QEFACAGLLKRMEGT  266 (510)
Q Consensus       194 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~  266 (510)
                      .....+..+... -....|..+..++.-.|+...|..++++..+.. -.|+...+.-..      .-..++|..++|++.
T Consensus       129 ~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~  207 (700)
T KOG1156|consen  129 LETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH  207 (700)
T ss_pred             HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            776666655432 245566677777777777777777777766543 134444443322      233455666666666


Q ss_pred             HHHHHHCCCccCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhh-cchhHHHHHHHHHHhh
Q 010459          267 YKSMLTKRMHLRSSTM-VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR-KLAEVYIKN-YMFSRLDDLGDDLASR  343 (510)
Q Consensus       267 ~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~-~~~~~a~~~~~~~~~~  343 (510)
                      +..-... + .|...+ .+-...+.+.+++++|..++..++...  ||..-|. -+..++.+- +.......++......
T Consensus       208 L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~  283 (700)
T KOG1156|consen  208 LLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK  283 (700)
T ss_pred             HHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence            5544322 1 122222 223445566677777777777776654  4444443 333333322 1222222333333322


Q ss_pred             cCCc--------------------------------hHHHHHHHHHhhhhcccc----cHHHHHHHHHHCC---------
Q 010459          344 IGRT--------------------------------ELVWCLRLLSHACLLSHR----GIDSVVREMESAK---------  378 (510)
Q Consensus       344 ~~~~--------------------------------~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~g---------  378 (510)
                      .++.                                +.++..+.+.|-.....+    -+.++...+...|         
T Consensus       284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~  363 (700)
T KOG1156|consen  284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK  363 (700)
T ss_pred             CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence            2211                                222222222222211111    0111111121111         


Q ss_pred             -CCcCHHHHH--HHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcCCcccccccc
Q 010459          379 -VRWNVTTAN--IILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEIN  454 (510)
Q Consensus       379 -~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  454 (510)
                       -+|....|+  -++..|-+.|+++.|..+.+...++  .|+. .-|..=-+.+...|++++|..++++....+. ++..
T Consensus       364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~  440 (700)
T KOG1156|consen  364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRA  440 (700)
T ss_pred             cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHH
Confidence             145555554  4566788899999999999988865  4554 3344444567788899999999888744421 2222


Q ss_pred             ChhHHHHHhhccCchhHHHHHHhhcCCCCC
Q 010459          455 TDPLVLAVYGKGHFLRYCEEVYSSLEPYSR  484 (510)
Q Consensus       455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  484 (510)
                      ..+--..-..++.++++|.++....-..|.
T Consensus       441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  441 INSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            221222234468888899888877776554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.73  E-value=2.3e-05  Score=67.24  Aligned_cols=200  Identities=10%  Similarity=-0.034  Sum_probs=144.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      ..-|--.|...|+...|..-+++..+.+ +.+..+|..+...|-+.|+.+.|.+-|++....... +..+.|..-..+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence            4446667888888888888888888774 225677888888888888888888888888775433 56677778888888


Q ss_pred             cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 010459          222 YKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK  300 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~  300 (510)
                      .|++++|...|++....-.- --..+|..+.-+..+.|+.+.|.+.|++-.+.... ...+...+.....+.|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence            88888888888887754111 12456777777778888888888888887766432 34566777788888888888888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC
Q 010459          301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG  345 (510)
Q Consensus       301 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  345 (510)
                      .++.....+. ++..+.-..|..-...|+-+.+.+.-.++....+
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP  238 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP  238 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            8887776664 7777776667766667777666666555544433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=0.00025  Score=66.08  Aligned_cols=304  Identities=9%  Similarity=-0.048  Sum_probs=200.1

Q ss_pred             CCChhhHHHHHHHHHh--cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 010459          100 DWTKDHFWAVIRFLKN--SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-EI  176 (510)
Q Consensus       100 ~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~  176 (510)
                      .|+-.+.+.-+.++++  .++...|.+.+-.......++-|+....++.+.+...|+.++|+..|++....  .|+. ..
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~  268 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA  268 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence            3444444444555544  46666777777666665677888999999999999999999999999988744  2322 22


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010459          177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC  256 (510)
Q Consensus       177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  256 (510)
                      ...-.-.+.+.|+.+....+...+.... +-+...|-.-.......++++.|+.+-++-.+.. +.++..+-.--..+..
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~  346 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA  346 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence            2222334467888888888877775532 1233334333444455678888888888877543 3344444444456778


Q ss_pred             cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-hhcchhHHH
Q 010459          257 AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-EVYI-KNYMFSRLD  334 (510)
Q Consensus       257 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~  334 (510)
                      .|++++|.-.|+..+... +-+...|..|+..|...|...+|.-+-....+. ++-+..+...+- ..+. ....-++|.
T Consensus       347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence            899999999998877542 126789999999999999999987766655432 122333332221 1111 112235566


Q ss_pred             HHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          335 DLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      ++.+.-....+.-....+.+...+...|..+++..+++.-...  .||....+.|-+.+.-.+.+++|+..|.....
T Consensus       425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            6655555555555666666777777778888888888776653  56888888888888888888888888877665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=0.0002  Score=65.36  Aligned_cols=357  Identities=13%  Similarity=0.046  Sum_probs=205.8

Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459          109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG  188 (510)
Q Consensus       109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  188 (510)
                      +...+.+.|++++|...+..+.+  .-.|+...+-.|..++.-.|.+.+|..+-...+     .+...-..|...-.+.+
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence            34556788999999999998874  556777777777777777799999988866543     34444455556666777


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 010459          189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL-IQEFACAGLLKRMEGTY  267 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~  267 (510)
                      +-++-..+-+.+...     ..---+|.......-.+.+|..++.+....  .|+-...|.- .-+|.+..-++-+.+++
T Consensus       136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl  208 (557)
T KOG3785|consen  136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVL  208 (557)
T ss_pred             cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence            777766666665431     122234444444445688899999888765  4555555543 34667777778888887


Q ss_pred             HHHHHCCCccCH-HHHHHHHHHHHh----cCChhHH------------HHHHHHHHhcCC------C------CC-----
Q 010459          268 KSMLTKRMHLRS-STMVAILDAYMN----FGMLDKM------------EKFYKRLLNSRT------P------LK-----  313 (510)
Q Consensus       268 ~~m~~~g~~p~~-~t~~~ll~~~~~----~g~~~~a------------~~~~~~m~~~~~------~------~~-----  313 (510)
                      +-..+.  -||+ ...+  +.+|..    .|+..+.            ....+.+.++++      +      |.     
T Consensus       209 ~vYL~q--~pdStiA~N--Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I  284 (557)
T KOG3785|consen  209 KVYLRQ--FPDSTIAKN--LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI  284 (557)
T ss_pred             HHHHHh--CCCcHHHHH--HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence            766654  2332 2222  223321    1211111            111122222211      0      00     


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc-------ccccHHHHHHHHHHCCCC------
Q 010459          314 EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-------SHRGIDSVVREMESAKVR------  380 (510)
Q Consensus       314 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~------  380 (510)
                      +..--.|+--|.+.+++.+|..+.+++.   +..+.-|-.-...++..|       +.+-|.+.|+-.-+.+..      
T Consensus       285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG  361 (557)
T KOG3785|consen  285 PEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG  361 (557)
T ss_pred             hHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence            1111223444666777777777744433   222222222112222222       222233333333222221      


Q ss_pred             ------------------------------cCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHH-hhh
Q 010459          381 ------------------------------WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD-ARR  429 (510)
Q Consensus       381 ------------------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~-~~~  429 (510)
                                                    -|...+ .+..+++..|.+.+|.++|-+.....+ -|..+|.+++. +|.
T Consensus       362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi  439 (557)
T KOG3785|consen  362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYI  439 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHH
Confidence                                          112222 356678888999999999987765433 35667776665 778


Q ss_pred             hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHH
Q 010459          430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQ  492 (510)
Q Consensus       430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  492 (510)
                      +.+.++.|.+++-++...+.  .......+.+-|-+++.+--|.+.|+.+..  .+|++..|.
T Consensus       440 ~nkkP~lAW~~~lk~~t~~e--~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe  498 (557)
T KOG3785|consen  440 RNKKPQLAWDMMLKTNTPSE--RFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE  498 (557)
T ss_pred             hcCCchHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence            89999999998877633211  111223345678899999999999998887  577766664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=0.00016  Score=67.31  Aligned_cols=299  Identities=11%  Similarity=0.005  Sum_probs=190.5

Q ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 010459          137 INEFNSQKIIGMLCEE--GLMEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD-TY  212 (510)
Q Consensus       137 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~  212 (510)
                      |+..+...-|.+++.+  ++-..|...+-.+... -+.-|+.....+...+...|+.++|...|++.+..  .|+.. ..
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M  269 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM  269 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence            4444445556666655  4444444444333322 24557788888999999999999999999887664  23322 22


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459          213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF  292 (510)
Q Consensus       213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  292 (510)
                      ....-.+.+.|+.+....+...+-... .-+...|-.-....-..++++.|+.+-++-++.... +...|..=-..+...
T Consensus       270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~  347 (564)
T KOG1174|consen  270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL  347 (564)
T ss_pred             HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence            222333456777887777777665332 234444544445555677888898888887765322 334444444667778


Q ss_pred             CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHH-HHhh-hhcccccHHHH
Q 010459          293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRL-LSHA-CLLSHRGIDSV  370 (510)
Q Consensus       293 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~  370 (510)
                      +++++|.--|+..+... +.+...|.-|+..|...|.+.+|.-.........+.+..+.+.+. ..+. ...-.++|..+
T Consensus       348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence            89999988888776543 457788999999999999999888776666555555555544432 1111 11122566666


Q ss_pred             HHHHHHCCCCcCH-HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          371 VREMESAKVRWNV-TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       371 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      ++.-.+.  .|+- ..-+.+...|...|..++++.+++.-..  ..||..--+.|-+.+.....+++|++.|...
T Consensus       427 ~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  427 AEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA  497 (564)
T ss_pred             HHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            6655443  3432 3445555677788888888888887765  3578777777777777777778887777665

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=9.4e-05  Score=75.96  Aligned_cols=205  Identities=11%  Similarity=0.126  Sum_probs=127.4

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      ||+..+..++++...+-+.+-.++++.+.-... +.-+...-|.||-.-.|. +..+..+..+++-..+ .|+      +
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence            444555666777777777777777666553111 111222233333333332 4445555555554332 122      2


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      ...+..++-+++|..+|+..     ..+....+.||.   ..+.++.|.+.-++..      ....|..+..+-.+.|..
T Consensus      1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence            23344556677777777764     234555566665   3455666666555544      345788888888888888


Q ss_pred             HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459          261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      .+|.+-|-+..      |+..|.-+++.+.+.|.+++-...+....+..-+|.+.  +.||-+|++.+++.+.+.+
T Consensus      1121 ~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1121 KDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred             HHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence            88887764322      67788899999999999999888887777766666543  5788889998888777766

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.62  E-value=0.00033  Score=68.99  Aligned_cols=365  Identities=10%  Similarity=0.038  Sum_probs=216.0

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII  181 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  181 (510)
                      +.+.|..+--.+....++++|.+.|.....  --+-|...|--+--.-++.|+++..........+.. ......|....
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~A  150 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFA  150 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHH
Confidence            445666665556667889999999998763  334466677766666677788888887777777553 23567888888


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH------HHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 010459          182 HGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQA------YGKYKMYDEIDMCLKMMKLDGCSPDHITY-NLLIQE  253 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~------~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~  253 (510)
                      .++.-.|+...|.++.++..+.- -.|+...|......      ..+.|..++|.+.+......  ..|-..+ -+-..-
T Consensus       151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l  228 (700)
T KOG1156|consen  151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL  228 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence            88888999999999998886654 34666666433332      23456666666666554422  1222222 234455


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH-hcCChhHHH-HHH-----------------------------
Q 010459          254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM-NFGMLDKME-KFY-----------------------------  302 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~-~~~-----------------------------  302 (510)
                      +.+.+++++|..++..+...  .||..-|.-.+..+. +..+.-++. .+|                             
T Consensus       229 ~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~  306 (700)
T KOG1156|consen  229 LMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI  306 (700)
T ss_pred             HHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence            67777788888887777766  345544444333332 222222222 333                             


Q ss_pred             -----HHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHH---------------hhcCCchHHHHH--HHHHhhh
Q 010459          303 -----KRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA---------------SRIGRTELVWCL--RLLSHAC  360 (510)
Q Consensus       303 -----~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~--li~~~~~  360 (510)
                           ..+.+.|+++   ++..+...|-.....+-..++.-.+.               ...++....|+.  ++.-+-.
T Consensus       307 vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~  383 (700)
T KOG1156|consen  307 VDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK  383 (700)
T ss_pred             HHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence                 3333444433   22333333322111111111111111               112556677766  5677888


Q ss_pred             hcccccHHHHHHHHHHCCCCcCH-HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHH
Q 010459          361 LLSHRGIDSVVREMESAKVRWNV-TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALE  439 (510)
Q Consensus       361 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~  439 (510)
                      .|+.+.|....+....+  .|+. ..|..=...+.+.|..++|...+++..+.. .||...=+--..-..++.+.++|.+
T Consensus       384 ~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~  460 (700)
T KOG1156|consen  384 LGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE  460 (700)
T ss_pred             cccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence            89999999999988875  3433 344444567899999999999999988643 2444332222223445678899988


Q ss_pred             HHHHcCCccc--cccccChhHHH------HHhhccCchhHHHHHHhhc
Q 010459          440 MWKRIGFLFK--TVEINTDPLVL------AVYGKGHFLRYCEEVYSSL  479 (510)
Q Consensus       440 ~~~~~~~~~~--~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m  479 (510)
                      +.......+.  ..+..-..++|      .+|.+.|++..|.+=|..+
T Consensus       461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            8877655433  11112222332      4678888888877655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.59  E-value=6.1e-05  Score=73.21  Aligned_cols=157  Identities=9%  Similarity=0.027  Sum_probs=111.8

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQK---IIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKI  187 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~  187 (510)
                      .+...|++++|.+.++....  ..+.|...+..   +.......+..+.+.+.++..  ....|+ ...+..+...+...
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~  127 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLD--DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA  127 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence            45678999999999998875  33444445542   222222345666666666552  112333 34445666788899


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHH
Q 010459          188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPDH--ITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~  264 (510)
                      |++++|.+.+++..+... .+...+..+...|...|++++|...+++...... .|+.  ..|..+...+...|++++|.
T Consensus       128 G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  206 (355)
T cd05804         128 GQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL  206 (355)
T ss_pred             CCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999988653 3567788899999999999999999999876532 2332  34567888899999999999


Q ss_pred             HHHHHHHHC
Q 010459          265 GTYKSMLTK  273 (510)
Q Consensus       265 ~~~~~m~~~  273 (510)
                      .++++....
T Consensus       207 ~~~~~~~~~  215 (355)
T cd05804         207 AIYDTHIAP  215 (355)
T ss_pred             HHHHHHhcc
Confidence            999998644

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.57  E-value=2.7e-06  Score=78.98  Aligned_cols=248  Identities=14%  Similarity=0.089  Sum_probs=120.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC  231 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~  231 (510)
                      .|++..++.-.+ .....-+.+......+.+++...|+.+.++   .+.... -.|.......+...+....+-+.+..-
T Consensus        14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~   88 (290)
T PF04733_consen   14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEE   88 (290)
T ss_dssp             TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred             hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence            355666554444 221111112334455566666666655433   222222 255555554444444333444444444


Q ss_pred             HHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459          232 LKMMKLDGCSPDHITYN-LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT  310 (510)
Q Consensus       232 ~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  310 (510)
                      +++.......++..++. .....+...|++++|++++..-      .+.......+..|.+.++++.|.+.++.|.+.. 
T Consensus        89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-  161 (290)
T PF04733_consen   89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID-  161 (290)
T ss_dssp             HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence            44433322222222222 2223344567777777766432      244555566677777777777777777776543 


Q ss_pred             CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459          311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL  390 (510)
Q Consensus       311 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  390 (510)
                       .| .+...|..++..                              .+.......+|..+|+++.+. ..++..+.|.+.
T Consensus       162 -eD-~~l~qLa~awv~------------------------------l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A  208 (290)
T PF04733_consen  162 -ED-SILTQLAEAWVN------------------------------LATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA  208 (290)
T ss_dssp             -CC-HHHHHHHHHHHH------------------------------HHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred             -Cc-HHHHHHHHHHHH------------------------------HHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence             22 222223332221                              111112356677777776554 455677777777


Q ss_pred             HHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCcc-chHHHHHHHcC
Q 010459          391 LAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG-TGALEMWKRIG  445 (510)
Q Consensus       391 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~-~~a~~~~~~~~  445 (510)
                      .++...|++++|.+++.+..+.. .-+..|...++-+....|+. +.+.+++.++.
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            77777777777777777765432 11345555555555555555 44555666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.57  E-value=1.8e-06  Score=80.11  Aligned_cols=208  Identities=13%  Similarity=0.010  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAY  219 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~  219 (510)
                      ...-+..+|...|+.+.++   .++.+.. .|.......+...+...++-+.++.-+++....+..+ +..........+
T Consensus        37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~  112 (290)
T PF04733_consen   37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL  112 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            3444566677777766443   3343332 5555555444433333344445555444443333332 222223333455


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCCh
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGML  295 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~  295 (510)
                      ...|++++|+++++.-      .+.......+..|.+.++++.|.+.++.|.+.+  .| .+...+..++..    ...+
T Consensus       113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~  183 (290)
T PF04733_consen  113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY  183 (290)
T ss_dssp             CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred             HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence            5677777777777542      355566667777778888888888888877543  23 333334443333    3357


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc
Q 010459          296 DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL  362 (510)
Q Consensus       296 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  362 (510)
                      .+|.-+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.....+.++.+...++......|
T Consensus       184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g  249 (290)
T PF04733_consen  184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG  249 (290)
T ss_dssp             CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence            7777788776543 35666666666666666666666666544443333333333333333333333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.57  E-value=0.00077  Score=65.10  Aligned_cols=131  Identities=10%  Similarity=-0.021  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHh
Q 010459          280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL-KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH  358 (510)
Q Consensus       280 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  358 (510)
                      .+|...++.-.+..-+..|+.+|.+..+.+..+ ++.+.++++.-||.. +..-|.++|+-=....+.++.--...+.-+
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf~d~p~yv~~YldfL  445 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKFGDSPEYVLKYLDFL  445 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            466777777777778888888888888877666 777888888887754 456677776665666666666667777777


Q ss_pred             hhhcccccHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          359 ACLLSHRGIDSVVREMESAKVRWN--VTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       359 ~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      ...++-..+..+|++....++.||  ...|..+|.-=..-|+...+.++-+++..
T Consensus       446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            777888888888888888866554  36788888888888888888888777753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.57  E-value=9.2e-05  Score=63.66  Aligned_cols=131  Identities=17%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  255 (510)
                      +..-|--+|.+.|+...|..-+++.++.... +..+|..+...|-+.|+.+.|.+.|++..+.. +.+..+.|..-..+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            3444555666666666666666666665432 44566666666666666666666666665543 234455555555566


Q ss_pred             HcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          256 CAGLLKRMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ..|++++|...|++......-| -..||..+.-+..+.|+.+.|++.|++.++.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            6666666666666655432111 2345555555555666666666666665554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.53  E-value=2.5e-05  Score=77.37  Aligned_cols=347  Identities=14%  Similarity=0.076  Sum_probs=202.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHH
Q 010459           66 LLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKI  145 (510)
Q Consensus        66 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  145 (510)
                      ..|--|.....|++++..-+..+.+...-+          -.+.++++...|+-++|-++-..    .|-      --+-
T Consensus       562 ~aigmy~~lhkwde~i~lae~~~~p~~ekl----------k~sy~q~l~dt~qd~ka~elk~s----dgd------~laa  621 (1636)
T KOG3616|consen  562 EAIGMYQELHKWDEAIALAEAKGHPALEKL----------KRSYLQALMDTGQDEKAAELKES----DGD------GLAA  621 (1636)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhcCChHHHHH----------HHHHHHHHHhcCchhhhhhhccc----cCc------cHHH
Confidence            344456666777777777665555543322          23455566666666655444210    111      1234


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------------ChHHHHHHHHHHHHC---------
Q 010459          146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-------------KFNEALLFLNEMKEM---------  203 (510)
Q Consensus       146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~~---------  203 (510)
                      |..|.+.|.+..|.+.-..=..  +..|......+..++.+..             ++++|++.|++=-..         
T Consensus       622 iqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf  699 (1636)
T KOG3616|consen  622 IQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF  699 (1636)
T ss_pred             HHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence            6667777776666544321110  1223333333333333333             333444433321000         


Q ss_pred             CCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 010459          204 NLSPQSDTY-DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM  282 (510)
Q Consensus       204 g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  282 (510)
                      .++..+++. ..--..+...|+++.|..-|-+..         ..-..|.+....+.|.+|+.+++.++....  -+--|
T Consensus       700 afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy  768 (1636)
T KOG3616|consen  700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYY  768 (1636)
T ss_pred             hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccc
Confidence            010011111 111122233455555554443322         123346677788899999999998887643  23357


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc
Q 010459          283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL  362 (510)
Q Consensus       283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  362 (510)
                      .-+.+-|+..|+++.|+++|-+.         ..++--|.+|.++|.+..|.++...+... ......|-+-..-.-.+|
T Consensus       769 ~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~-e~t~~~yiakaedldehg  838 (1636)
T KOG3616|consen  769 GEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP-EATISLYIAKAEDLDEHG  838 (1636)
T ss_pred             hHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc-hhHHHHHHHhHHhHHhhc
Confidence            77889999999999999998543         23566789999999999998886554322 222344444445556677


Q ss_pred             ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH--HHHHHHHHhhhhcCccchHHHH
Q 010459          363 SHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI--VTIGILYDARRIGFDGTGALEM  440 (510)
Q Consensus       363 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~  440 (510)
                      ++.+|.+++-.+..    |+     ..|..|-+.|..++.+++..+--     |+.  .|-..+-.-+...|++..|.+-
T Consensus       839 kf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~  904 (1636)
T KOG3616|consen  839 KFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEH  904 (1636)
T ss_pred             chhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHH
Confidence            77777777655433    44     35778899999988888776543     232  3444455567778899999888


Q ss_pred             HHHcCCccccccccChhHHHHHhhccCchhHHHHHHhh
Q 010459          441 WKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS  478 (510)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  478 (510)
                      |-+.         ..|.+.+++|...+.+++|.++-+.
T Consensus       905 flea---------~d~kaavnmyk~s~lw~dayriakt  933 (1636)
T KOG3616|consen  905 FLEA---------GDFKAAVNMYKASELWEDAYRIAKT  933 (1636)
T ss_pred             HHhh---------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence            7655         4567788999999999999888754

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.50  E-value=0.00096  Score=67.13  Aligned_cols=378  Identities=11%  Similarity=-0.053  Sum_probs=209.4

Q ss_pred             hccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010459           96 QHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE  175 (510)
Q Consensus        96 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  175 (510)
                      .....+++..|..+.-++...|+++.+-+.|+...  .+.--....|+.+-..|..+|.-..|..+.+.-....-.|+..
T Consensus       316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~  393 (799)
T KOG4162|consen  316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI  393 (799)
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence            33445788888888888899999999999999876  4555667788888888888888888888887665443224333


Q ss_pred             HHHHHHH-HHH-hcCChHHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhC
Q 010459          176 IYNSIIH-GYS-KIGKFNEALLFLNEMKEM--N--LSPQSDTYDGLIQAYGKY-----------KMYDEIDMCLKMMKLD  238 (510)
Q Consensus       176 ~~~~li~-~~~-~~g~~~~a~~~~~~m~~~--g--~~p~~~t~~~li~~~~~~-----------g~~~~a~~~~~~m~~~  238 (510)
                      +--.|+. .|. +-+..++++.+-.+....  +  -......|-.+--+|...           ....++.+.+++..+.
T Consensus       394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~  473 (799)
T KOG4162|consen  394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF  473 (799)
T ss_pred             hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence            3222222 222 234445554444443331  1  011223333333333221           1233444455554433


Q ss_pred             C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCC------
Q 010459          239 G-CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN-SRT------  310 (510)
Q Consensus       239 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~------  310 (510)
                      + -.|++..|-++  -|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.... .|.      
T Consensus       474 d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~  551 (799)
T KOG4162|consen  474 DPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD  551 (799)
T ss_pred             CCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence            2 12333222222  2344445555555555555443333444444444444444444444444443321 111      


Q ss_pred             ------------CCCHHHHHHHHHHHH----------h-------------hcchhHHH-------HH------------
Q 010459          311 ------------PLKEDLVRKLAEVYI----------K-------------NYMFSRLD-------DL------------  336 (510)
Q Consensus       311 ------------~~~~~~~~~li~~~~----------~-------------~~~~~~a~-------~~------------  336 (510)
                                  .--..|...++..+-          +             .++..++.       ..            
T Consensus       552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~  631 (799)
T KOG4162|consen  552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL  631 (799)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence                        000011111111111          0             00000000       00            


Q ss_pred             -HHHHHhhcCCc------hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459          337 -GDDLASRIGRT------ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL  409 (510)
Q Consensus       337 -~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  409 (510)
                       ...+...+.++      ...|......+...+..++|...+.+.....+- ....|...-..+...|.+++|.+.|...
T Consensus       632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~A  710 (799)
T KOG4162|consen  632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVA  710 (799)
T ss_pred             ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence             01111111122      345666777788888888888777766655322 4556666666788899999999999888


Q ss_pred             hhCCCCCCH-HHHHHHHHhhhhcCccchHHH--HHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          410 PTRHVKPDI-VTIGILYDARRIGFDGTGALE--MWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       410 ~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      ..  +.|+. ....++-..+.+.|+..-|..  ++..+... .+.+...|-.+...+-+.|+.+.|.+-|....+
T Consensus       711 l~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  711 LA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             Hh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            75  46765 456667778888888877777  77776444 334667788888999999999999998876655

>PLN02789 farnesyltranstransferase

Probab=98.49  E-value=0.00025  Score=66.88  Aligned_cols=222  Identities=10%  Similarity=-0.034  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      +++.+-..+.+.++.++|+.+.+++.+... -+..+|+.--..+...| +++++++.++++.+...+ +..+|+..-..+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l  116 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence            344555555666777777777777765531 13445655555555555 467777777777665443 444565544444


Q ss_pred             HccCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459          220 GKYKMY--DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK  297 (510)
Q Consensus       220 ~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  297 (510)
                      .+.|+.  +++...++++.+.. +.|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+.+... 
T Consensus       117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~-  193 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG-  193 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-
Confidence            455542  45666666666554 346667776666666667777777777777666544 4444444333322221100 


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc----ccccHHHHHHH
Q 010459          298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL----SHRGIDSVVRE  373 (510)
Q Consensus       298 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~  373 (510)
                                 +.                ....++............+.+..+|+.+...+...+    ...+|.+.+.+
T Consensus       194 -----------~~----------------~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~  246 (320)
T PLN02789        194 -----------GL----------------EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE  246 (320)
T ss_pred             -----------cc----------------cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence                       00                001123334444455556677777777766665532    23457777777


Q ss_pred             HHHCCCCcCHHHHHHHHHHHHc
Q 010459          374 MESAKVRWNVTTANIILLAYLK  395 (510)
Q Consensus       374 m~~~g~~p~~~~~~~li~~~~~  395 (510)
                      ....++. +......|++.|+.
T Consensus       247 ~~~~~~~-s~~al~~l~d~~~~  267 (320)
T PLN02789        247 VLSKDSN-HVFALSDLLDLLCE  267 (320)
T ss_pred             hhcccCC-cHHHHHHHHHHHHh
Confidence            6664433 56667777777765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.47  E-value=0.00053  Score=75.62  Aligned_cols=333  Identities=9%  Similarity=-0.030  Sum_probs=197.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C----CCCH--HHHHHHHHHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN--L----SPQS--DTYDGLIQAYG  220 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~p~~--~t~~~li~~~~  220 (510)
                      ....|+++.+...++.++......+..........+...|++++|...+....+.-  .    .|..  .....+-..+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            34457777777777665322111222222334445567889999999988775421  1    1111  12222334456


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-ccCHHHHHHHHHHHHh
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDH----ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RM-HLRSSTMVAILDAYMN  291 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~  291 (510)
                      ..|++++|...+++..+.-...+.    ..++.+-..+...|++++|...+++....    |- .+...++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            789999999999987653111221    23455556677899999999999887642    11 1112345566677888


Q ss_pred             cCChhHHHHHHHHHHh----cCCC--C-CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC---C--chHHHHHHHHHhh
Q 010459          292 FGMLDKMEKFYKRLLN----SRTP--L-KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG---R--TELVWCLRLLSHA  359 (510)
Q Consensus       292 ~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~li~~~~  359 (510)
                      .|++++|.+.+++..+    .+..  + ....+..+...+...|++++|............   +  ....+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            9999999999887664    2221  1 123344556667778999999888766543211   1  1333444556777


Q ss_pred             hhcccccHHHHHHHHHHCCCC-cCHHHH-----HHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH---HHHHHHHhhhh
Q 010459          360 CLLSHRGIDSVVREMESAKVR-WNVTTA-----NIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV---TIGILYDARRI  430 (510)
Q Consensus       360 ~~~~~~~a~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~  430 (510)
                      ..|+.++|.+.+++....... .....+     ...+..+...|+.+.|...+.............   .+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            889999998888877542110 011111     112244556889999999987765422111111   12334446777


Q ss_pred             cCccchHHHHHHHcCCccccccc-----cChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          431 GFDGTGALEMWKRIGFLFKTVEI-----NTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       431 ~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      .|+.++|...+++........+.     .....+..++.+.|+.++|...+.+..+
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88899998888876332111111     1223334567788999999888877765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=5.5e-05  Score=67.28  Aligned_cols=302  Identities=13%  Similarity=0.111  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG-LIQAY  219 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-li~~~  219 (510)
                      -+++.+.-+.+..++.+|++++..-.+.. +.+....+.|-.+|-...++..|-..++++-..  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            35556666667777777777776665542 225666667777777777777777777776442  344444432 22334


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF--ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK  297 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  297 (510)
                      .+.+.+.+|+++...|...   ++...-..-+.+.  -..+++..+..++++....|   +..+.+..--...+.|+++.
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            4566677777777666531   2222211112221  23456666666666554332   22233222223345677777


Q ss_pred             HHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459          298 MEKFYKRLLN-SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES  376 (510)
Q Consensus       298 a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  376 (510)
                      |.+-|....+ .|..| ...||.-+..|. .++.+.|.+....+..+..++-.-++.                   -|..
T Consensus       163 AvqkFqaAlqvsGyqp-llAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgI-------------------Gm~t  221 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQP-LLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGI-------------------GMTT  221 (459)
T ss_pred             HHHHHHHHHhhcCCCc-hhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCc-------------------ccee
Confidence            7777776665 34433 344554444442 334444444443333222211000000                   0000


Q ss_pred             CCCCcC---------------HHHHHHHHHHHHcCCChhHHHHHHHhhh-hCCCCCCHHHHH--HHHHhhhhcCccchHH
Q 010459          377 AKVRWN---------------VTTANIILLAYLKMKDFKHLRVLLSELP-TRHVKPDIVTIG--ILYDARRIGFDGTGAL  438 (510)
Q Consensus       377 ~g~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~--~li~~~~~~~~~~~a~  438 (510)
                      .|  ||               +..+|.-..-+.+.|+.+.|.+-+-.|. +..-..|++|..  ++.++-++.++.-+-+
T Consensus       222 eg--iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KL  299 (459)
T KOG4340|consen  222 EG--IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKL  299 (459)
T ss_pred             cc--CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHH
Confidence            00  11               1122222233456777777777777775 322334444433  3333333233222223


Q ss_pred             HHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhh
Q 010459          439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSS  478 (510)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  478 (510)
                      .++-.+    .|....++..++-.|+|..-++.|..++-+
T Consensus       300 qFLL~~----nPfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  300 QFLLQQ----NPFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHhc----CCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            333222    123445666666677777777777666543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=0.0013  Score=60.11  Aligned_cols=294  Identities=10%  Similarity=0.011  Sum_probs=177.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII-HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY  222 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  222 (510)
                      +|.++.--.-.+++|++++.+....  .|+-...|.-+ -+|.+..-++-+.+++.-.++.- .-+....|.......+.
T Consensus       156 SLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  156 SLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRL  232 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhh
Confidence            3444433445678888888888755  45555555444 35566666777777777765542 22233333333222221


Q ss_pred             --CCH---------------------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459          223 --KMY---------------------------------DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY  267 (510)
Q Consensus       223 --g~~---------------------------------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  267 (510)
                        |+.                                 +.|++++-.+.+.  .|  ..--.++--|.+.++..+|..+.
T Consensus       233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~  308 (557)
T KOG3785|consen  233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLC  308 (557)
T ss_pred             hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHH
Confidence              211                                 1222222222110  11  22233455688899999999988


Q ss_pred             HHHHHCCCccCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhhcchhHHHHHHHHHH
Q 010459          268 KSMLTKRMHLRSSTMVAILDAY-----MNFGMLDKMEKFYKRLLNSRTPLKEDLV-RKLAEVYIKNYMFSRLDDLGDDLA  341 (510)
Q Consensus       268 ~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~  341 (510)
                      +++.-  ..|-.+..-.+..+-     .....+.-|.+.|...-.++...|.... .++...+.-..+++++......+.
T Consensus       309 Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~  386 (557)
T KOG3785|consen  309 KDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE  386 (557)
T ss_pred             hhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77642  233333333333222     1122345577777655555554443322 344455555667888888888888


Q ss_pred             hhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHH-HHHcCCChhHHHHHHHhhhhCCCCCCHHH
Q 010459          342 SRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILL-AYLKMKDFKHLRVLLSELPTRHVKPDIVT  420 (510)
Q Consensus       342 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  420 (510)
                      +....+..--..+..+++..|...+|.++|-++....++ |..+|-+++. .|.++++++.|+.++-.+..   ..+.++
T Consensus       387 sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fs  462 (557)
T KOG3785|consen  387 SYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFS  462 (557)
T ss_pred             HHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHH
Confidence            777777666667888999999999999999988776666 7778776654 88999999999988766653   235555


Q ss_pred             HHHHHH-hhhhcCccchHHHHHHHcCCcccc
Q 010459          421 IGILYD-ARRIGFDGTGALEMWKRIGFLFKT  450 (510)
Q Consensus       421 ~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~  450 (510)
                      ...+|. -|.+.+.+--|-+.|+.+...++.
T Consensus       463 LLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  463 LLQLIANDCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence            555554 577777777777777777554433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.43  E-value=0.00012  Score=77.75  Aligned_cols=182  Identities=8%  Similarity=-0.008  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010459          247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK  326 (510)
Q Consensus       247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  326 (510)
                      |.++++.-..-|.-+...++|++..+..-  ....|..|...|.+.+..++|-++++.|.+.-- -...+|...++.+.+
T Consensus      1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLR 1576 (1710)
T ss_pred             HHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhc
Confidence            44444444444444444444444433210  112344444444444444444444444443211 233344444444444


Q ss_pred             hcchhHHHHHHHHHHhhcCC--chHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHH
Q 010459          327 NYMFSRLDDLGDDLASRIGR--TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV  404 (510)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  404 (510)
                      .+.-+.|..++.......++  ......-.+..-.++|+.+.+..+|+......++ -...|+..|+.=.++|+.+.+..
T Consensus      1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred             ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHH
Confidence            44444444444333332222  2222333334445556666666666666655443 45567777777777777777777


Q ss_pred             HHHhhhhCCCCCCH--HHHHHHHHhhhhcC
Q 010459          405 LLSELPTRHVKPDI--VTIGILYDARRIGF  432 (510)
Q Consensus       405 ~~~~m~~~g~~p~~--~t~~~li~~~~~~~  432 (510)
                      +|++....++.|-.  +.|.-.+..-...|
T Consensus      1656 lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred             HHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence            77777666665543  33444444333333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.42  E-value=0.00018  Score=76.58  Aligned_cols=224  Identities=11%  Similarity=0.021  Sum_probs=175.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY  247 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  247 (510)
                      +...|-.-|.-..+.++.++|.+++++.+.. +.+     -...|.++++.-..-|.-+...++|++..+.-  --...|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence            4577989999999999999999999988653 211     12367778877777788888999999998752  234568


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh
Q 010459          248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEVYIK  326 (510)
Q Consensus       248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~  326 (510)
                      ..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+.++-+.|..++.+..+.--. --.......+.+-.+
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            889999999999999999999998652 235678888999999999999999999988865211 123445666777788


Q ss_pred             hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCChh
Q 010459          327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV--TTANIILLAYLKMKDFK  400 (510)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~  400 (510)
                      +|+-++++.+|+......++....|+..|..-.++|+.+.++.+|++....++.|-.  ..|.-.+.-=-+.|+-.
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            999999999999999999999999999999999999999999999999999887643  33444443333444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.40  E-value=0.0011  Score=73.07  Aligned_cols=332  Identities=11%  Similarity=-0.014  Sum_probs=198.0

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCH--HHHHHHHHHH
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL------KPSL--EIYNSIIHGY  184 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~  184 (510)
                      ....|+.+.+.++++.+.. .....+..........+...|++++|...++.....--      .+..  .....+-..+
T Consensus       384 l~~~g~~~~l~~~l~~lp~-~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        384 LFNQGELSLLEECLNALPW-EVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHhcCChHHHHHHHHhCCH-HHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            3445666665555554321 11111222233444555677999999999887754310      1111  1122223445


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC---SPD--HITYNLLIQEFA  255 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~--~~~~~~li~~~~  255 (510)
                      ...|++++|...+++..+.-...+.    .+.+.+...+...|++++|...+++.....-   .+.  ..++..+...+.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            6789999999999987663211121    3445666677789999999999888764210   111  234455566788


Q ss_pred             HcCCHHHHHHHHHHHHH----CCCc--c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCC--CHHHHHHHHHHH
Q 010459          256 CAGLLKRMEGTYKSMLT----KRMH--L-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPL--KEDLVRKLAEVY  324 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~--~~~~~~~li~~~  324 (510)
                      ..|++++|...+++...    .+..  | ....+..+...+...|++++|...+.+....  ...+  ....+..+...+
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            89999999999887654    2221  1 2233445556677789999999998887642  1112  223344456677


Q ss_pred             HhhcchhHHHHHHHHHHhhcCC--chHHHHH-----HHHHhhhhcccccHHHHHHHHHHCCCCcCH---HHHHHHHHHHH
Q 010459          325 IKNYMFSRLDDLGDDLASRIGR--TELVWCL-----RLLSHACLLSHRGIDSVVREMESAKVRWNV---TTANIILLAYL  394 (510)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~  394 (510)
                      ...|+.+.|.+.+.........  ....|..     .+..+...|+.+.|.+.+............   ..+..+..++.
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            7889999998887766533211  1111111     123344567778888887665542221111   11345566788


Q ss_pred             cCCChhHHHHHHHhhhhC----CCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcC
Q 010459          395 KMKDFKHLRVLLSELPTR----HVKPDI-VTIGILYDARRIGFDGTGALEMWKRIG  445 (510)
Q Consensus       395 ~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~  445 (510)
                      ..|+.++|..++.+....    |..++. .+...+-.++.+.|+.++|.+.+.+..
T Consensus       703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al  758 (903)
T PRK04841        703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL  758 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            899999999999987642    333322 234444446788999999999888773

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.0005  Score=61.33  Aligned_cols=292  Identities=13%  Similarity=0.015  Sum_probs=182.7

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI-IHG  183 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~  183 (510)
                      -+++++..+.+..++++|.+++....+  ..+.+....+.|-.+|-...++..|-..++++...  .|...-|..- ...
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            467788878888999999999886653  33346777888888999999999999999998865  5555555322 244


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY--GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK  261 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  261 (510)
                      +-+.+.+..|+++...|...   |+...-..=+.+.  ...+++..+..+.++....|   +..+.+..--..-+.|+++
T Consensus        88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence            55778888999998888553   2222222222222  23577778888888877543   2222222222345778888


Q ss_pred             HHHHHHHHHHH-CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------------CCHH--------HHHH
Q 010459          262 RMEGTYKSMLT-KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-------------LKED--------LVRK  319 (510)
Q Consensus       262 ~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-------------~~~~--------~~~~  319 (510)
                      .|.+-|+...+ .|.. ....|+..+ +..+.|+.+.|.+...+++++|+.             ||+.        .-++
T Consensus       162 aAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa  239 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA  239 (459)
T ss_pred             HHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence            88888888765 4555 345666555 344667888888888888877653             1211        1133


Q ss_pred             HHHH-------HHhhcchhHHHHHHHHHHhhc--CCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459          320 LAEV-------YIKNYMFSRLDDLGDDLASRI--GRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL  390 (510)
Q Consensus       320 li~~-------~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  390 (510)
                      ++.+       +.+.++++.|.+.+-++..+.  .-++++...+...- ..+++-+..+-+.-+.+..+- ...||..++
T Consensus       240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlL  317 (459)
T KOG4340|consen  240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLL  317 (459)
T ss_pred             HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence            3333       345567777766633332111  12456655443322 233444444555555555554 467888888


Q ss_pred             HHHHcCCChhHHHHHHHhhh
Q 010459          391 LAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       391 ~~~~~~g~~~~A~~~~~~m~  410 (510)
                      -.||++.-++.|-.++-+=.
T Consensus       318 llyCKNeyf~lAADvLAEn~  337 (459)
T KOG4340|consen  318 LLYCKNEYFDLAADVLAENA  337 (459)
T ss_pred             HHHhhhHHHhHHHHHHhhCc
Confidence            89999988888888776543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.39  E-value=0.00015  Score=72.10  Aligned_cols=165  Identities=16%  Similarity=0.203  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      |..+.+-|+..|+++.|.++|-+.-         .++--|..|.+.|+|+.|.++-.+.  .|.......|-+-..-.-+
T Consensus       768 y~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedlde  836 (1636)
T KOG3616|consen  768 YGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDE  836 (1636)
T ss_pred             chHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHh
Confidence            3444445555555555555543321         1333444555555555555444332  2222233333333333444


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHH
Q 010459          222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKF  301 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~  301 (510)
                      .|++.+|++++-.+.    .|+.     .|..|-+.|..++.+++..+-.-..   -..|-..+..-+-..|++..|++-
T Consensus       837 hgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~  904 (1636)
T KOG3616|consen  837 HGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEH  904 (1636)
T ss_pred             hcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHH
Confidence            455555554443333    3332     3445555555555555554332111   124555666777778888888876


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHH
Q 010459          302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGD  338 (510)
Q Consensus       302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  338 (510)
                      |-+.         .-|.+-+++|-.++.+++|.++.+
T Consensus       905 flea---------~d~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  905 FLEA---------GDFKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             HHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence            6433         236677889999999999888843

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.38  E-value=8.7e-05  Score=67.45  Aligned_cols=163  Identities=12%  Similarity=0.110  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS--DTYDG  214 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~  214 (510)
                      .+-.+...+.+.|++++|...|++..+.  .|+    ...|..+...+.+.|++++|...++++.+.......  .++..
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            3444444455555555555555555433  121    123444445555555555555555555443211111  12222


Q ss_pred             HHHHHHcc--------CCHHHHHHHHHHHHhCCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 010459          215 LIQAYGKY--------KMYDEIDMCLKMMKLDGCSPD-HITY-----------------NLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       215 li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~-~~~~-----------------~~li~~~~~~g~~~~A~~~~~  268 (510)
                      +-..+.+.        |+.++|.+.|+.+.+..  |+ ...+                 -.+...|.+.|++++|...++
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~  190 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE  190 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            22333322        44555555555554431  22 1111                 123344556666666666666


Q ss_pred             HHHHCCC-cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          269 SMLTKRM-HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       269 ~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      ....... .| ....+..+..++...|+.++|..+++.+..
T Consensus       191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6554321 11 234555666666666666666666655543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=2.5e-05  Score=77.55  Aligned_cols=214  Identities=11%  Similarity=0.046  Sum_probs=157.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      ..+...+...|-...|+.+|++.         ..|.-+|.+|...|+..+|..+..+..+.  +||...|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence            34556677778888888888775         35667788888888888888888777763  67888888888777777


Q ss_pred             CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH
Q 010459          258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG  337 (510)
Q Consensus       258 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  337 (510)
                      --+++|.++++.....       .-..+-.-..+.++++++.+.++.-.+.. +....+|-.+-.+..+.++++.+.+.|
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            7788888888765432       00111111223677788888777665543 345567777777777888888888888


Q ss_pred             HHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          338 DDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       338 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      .......+.+..+||.+-.+|.+.++..+|...+.+..+.... +-..|..-+....+-|.+++|++.+.++.+
T Consensus       543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            8888888888888999999999999888898888888887644 455666666677888899998888888763

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.35  E-value=6.9e-07  Score=53.78  Aligned_cols=33  Identities=39%  Similarity=0.714  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ  208 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  208 (510)
                      +||++|++|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.33  E-value=0.00013  Score=64.12  Aligned_cols=160  Identities=14%  Similarity=0.043  Sum_probs=109.2

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459          107 WAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK  186 (510)
Q Consensus       107 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  186 (510)
                      ...-+.+...|+-+....+.....  ...+.|....+.++....+.|++..|...|.+..... ++|...|+.+--+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence            344555666677777776666543  3445566666677777777888888888887776553 4577778888888888


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010459          187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGT  266 (510)
Q Consensus       187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  266 (510)
                      .|++++|..-|.+..+.... +...+|.|.-.|.-.|+.+.|..++......+ ..|...-..+.......|++++|.++
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence            88888888777777664322 44556666667777788888888877777665 33555566666677777888887777


Q ss_pred             HHHHH
Q 010459          267 YKSML  271 (510)
Q Consensus       267 ~~~m~  271 (510)
                      -..-.
T Consensus       225 ~~~e~  229 (257)
T COG5010         225 AVQEL  229 (257)
T ss_pred             ccccc
Confidence            65443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.32  E-value=2.4e-05  Score=77.74  Aligned_cols=214  Identities=12%  Similarity=0.008  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYM  290 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  290 (510)
                      .-..+...+.+.|-...|..+|+++.         .|.-+|.+|...|+..+|..+..+-.+  -+||...|..+.+...
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence            33667778888999999999999876         588899999999999999999988877  3678889998888888


Q ss_pred             hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHH
Q 010459          291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV  370 (510)
Q Consensus       291 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  370 (510)
                      ...-+++|.++.++...+       .-..+-....+.++++++.+.++.-....+-...+|.....+..+.++.+.|.+.
T Consensus       469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence            888889999998876432       1111111122368899999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          371 VREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       371 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      |..-....+. +...||.+-.+|.+.|+-.+|...+.+..+.+..|- ..|...+-...+-|.+++|++.+.++
T Consensus       542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHHH
Confidence            9988876544 678999999999999999999999999998763332 33333333456778899999888877

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.32  E-value=9.8e-07  Score=53.09  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 010459          246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR  278 (510)
Q Consensus       246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  278 (510)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            577777777777777777777777777777776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PLN02789 farnesyltranstransferase

Probab=98.31  E-value=0.0014  Score=61.74  Aligned_cols=216  Identities=8%  Similarity=-0.037  Sum_probs=155.6

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      ++..+-..+...++.++|+.+.+.+.+.  .+-+..+|+..-.++.+.| ++++++..++++.+.. +.+..+|+..-..
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            3445555566788999999999988752  2334446666666666777 6899999999998775 3467788876666


Q ss_pred             HHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C
Q 010459          184 YSKIGKF--NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA---G  258 (510)
Q Consensus       184 ~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g  258 (510)
                      +.+.|+.  ++++++++.+.+...+ |..+|+...-.+.+.|++++++..++++.+.. ..|...|+.....+.+.   |
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence            6666653  6789999999887655 88899999999999999999999999999877 45778888766555444   2


Q ss_pred             CH----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 010459          259 LL----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF----GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN  327 (510)
Q Consensus       259 ~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  327 (510)
                      ..    +++++...+.+..... |...|+-+-..+...    +...+|.+.+.+..+.+ ..+......|++.|+..
T Consensus       194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence            22    4667777677665432 566777777767662    34466888887776644 34566778888888753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.31  E-value=0.00014  Score=66.03  Aligned_cols=172  Identities=10%  Similarity=0.001  Sum_probs=127.4

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL--EIY  177 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~  177 (510)
                      .....+......+.+.|++++|...|+.+.......|. ...+..+...|.+.|++++|...|+++.+.......  .++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            44556777888899999999999999988753222222 246777889999999999999999999876322111  245


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHccCCHHHHHHHH
Q 010459          178 NSIIHGYSKI--------GKFNEALLFLNEMKEMNLSPQSDTY-----------------DGLIQAYGKYKMYDEIDMCL  232 (510)
Q Consensus       178 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~t~-----------------~~li~~~~~~g~~~~a~~~~  232 (510)
                      ..+..++.+.        |+.++|.+.|+.+...... +...+                 -.+...|.+.|++++|...+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            5555555554        7889999999999875432 11122                 13456678899999999999


Q ss_pred             HHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          233 KMMKLDGC--SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       233 ~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +...+...  +.....|..+..++.+.|++++|..+++.+...
T Consensus       190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99886521  224578899999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=8.7e-05  Score=72.00  Aligned_cols=220  Identities=12%  Similarity=0.067  Sum_probs=125.6

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  264 (510)
                      .+.|++.+|.-.|+..+..... +...|--|-......++-..|...+.+..+.. +-|....-+|.-.|...|.-..|+
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence            4566677777777666665433 55666666666666666666666666666554 335555556666666667666777


Q ss_pred             HHHHHHHHCCCc--------cCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcchhHHHH
Q 010459          265 GTYKSMLTKRMH--------LRSSTMVAILDAYMNFGMLDKMEKFYKRLL-NSRTPLKEDLVRKLAEVYIKNYMFSRLDD  335 (510)
Q Consensus       265 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~  335 (510)
                      +.++..+....+        ++...-..  +.......+....++|-++. +.+..+|+.+...|--.|--.|.|+++.+
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            776665433210        00000000  11111122233334443333 34444666666666666666777777777


Q ss_pred             HHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459          336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL  409 (510)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  409 (510)
                      .|+......+.|...||-+...++...+.++|+..+.+..+..+. =+.++..|--.|...|.+++|.+.|-..
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            777766666667777777777777666667777777666654322 1233334555666667777766666544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.28  E-value=0.0056  Score=61.86  Aligned_cols=368  Identities=13%  Similarity=-0.000  Sum_probs=226.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHH
Q 010459          133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-QSDT  211 (510)
Q Consensus       133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t  211 (510)
                      ..+.-|...|..|.-+...+|+++.+-+.|++....- .-....|+.+-..|...|.-..|+.+++.-....-.| |...
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~  395 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV  395 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence            3455688899999999999999999999999887432 2356789999999999999999999998875544334 3333


Q ss_pred             HHHHHHHHH-ccCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC-
Q 010459          212 YDGLIQAYG-KYKMYDEIDMCLKMMKLD--GC--SPDHITYNLLIQEFACA-----------GLLKRMEGTYKSMLTKR-  274 (510)
Q Consensus       212 ~~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-  274 (510)
                      +-..-..|. +.+.++++...-.+....  +.  ......|-.+--+|...           ....++++.+++..+.+ 
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~  475 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP  475 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            333333343 346666666655555441  10  12233333333333321           12456777778777654 


Q ss_pred             CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHH
Q 010459          275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR  354 (510)
Q Consensus       275 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  354 (510)
                      -.|+..-|.++-  |+..++++.|.+...+..+.+-..+...+.-|.-.+...+++.+|..+........+.|-.....-
T Consensus       476 ~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  476 TDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             CCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence            456666665554  566788999999999999886677888888888888888999999988776665554432211111


Q ss_pred             HHHhhhhcccccHHHHHHHH---------------------------------------------------HHCC-----
Q 010459          355 LLSHACLLSHRGIDSVVREM---------------------------------------------------ESAK-----  378 (510)
Q Consensus       355 i~~~~~~~~~~~a~~~~~~m---------------------------------------------------~~~g-----  378 (510)
                      +..-..-++.++++.....+                                                   ...|     
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence            11111122222221111111                                                   0001     


Q ss_pred             ----C--CcC------HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHcC
Q 010459          379 ----V--RWN------VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMWKRIG  445 (510)
Q Consensus       379 ----~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~~  445 (510)
                          +  .|+      ...|......+.+.+..++|...+.+...  +.|-. ..|.-.-..+...|...+|.+.|....
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence                0  111      12344445566777777777766665554  22322 222222223556678888888887764


Q ss_pred             CccccccccChhHHHHHhhccCchhHHHH--HHhhcCCCCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459          446 FLFKTVEINTDPLVLAVYGKGHFLRYCEE--VYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       446 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  507 (510)
                      .. .|.++....++...+.+.|+..-|..  ++..+.+.+ +-+...|-.+-..+-+.|+.+.|
T Consensus       712 ~l-dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  712 AL-DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             hc-CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHH
Confidence            43 22234445667778888888887777  888887742 12445888888888888887754

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.27  E-value=1.5e-06  Score=51.95  Aligned_cols=32  Identities=34%  Similarity=0.645  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP  207 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  207 (510)
                      +||.+|++|++.|+++.|.++|++|++.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=0.0064  Score=61.85  Aligned_cols=106  Identities=5%  Similarity=-0.104  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCC-ccccccccC----h
Q 010459          382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGF-LFKTVEINT----D  456 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~----~  456 (510)
                      |....+-..+-++.+.++++|..++...++         |.-.+..|. ..+..-..++-+.|.- ....|+...    .
T Consensus      1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred             CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence            344444444555556666666665554432         222233222 2233333344444421 112222222    2


Q ss_pred             hHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCC
Q 010459          457 PLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNL  506 (510)
Q Consensus       457 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  506 (510)
                      ..+...|.+.|.+..|-+=|.+.-.+         -.-++++.++|+.++
T Consensus      1149 eqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred             HHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence            33456777888888887777655421         135677777887765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.0054  Score=60.09  Aligned_cols=345  Identities=13%  Similarity=0.072  Sum_probs=197.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHH--
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL--IQAY--  219 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--i~~~--  219 (510)
                      +=++.+.+.|++++|.+..+.+...+ +-+...+..=+-+..+.+++++|+.+.+.-..      ..+++..  =.+|  
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~   89 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE   89 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence            34677888999999999999999876 44667777888889999999999976654321      1222222  3444  


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-----------------------
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-----------------------  276 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------------------  276 (510)
                      .+.+..++|...++-..    ..|..+...=...+-+.|++++|+++|+.+.+.+..                       
T Consensus        90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            47899999999998433    223334444455678899999999999988554321                       


Q ss_pred             -----cCHHHHHHHHH---HHHhcCChhHHHHHHHHHHhc-------CCCCCH-------HHHHHHHHHHHhhcchhHHH
Q 010459          277 -----LRSSTMVAILD---AYMNFGMLDKMEKFYKRLLNS-------RTPLKE-------DLVRKLAEVYIKNYMFSRLD  334 (510)
Q Consensus       277 -----p~~~t~~~ll~---~~~~~g~~~~a~~~~~~m~~~-------~~~~~~-------~~~~~li~~~~~~~~~~~a~  334 (510)
                           | ..+|..+.+   .+...|++.+|++++....+.       +-.-+.       .+-..|.-.+...|+-.++.
T Consensus       166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence                 1 123333332   334578888888888877221       111111       11123445566778888888


Q ss_pred             HHHHHHHhhcCCch----HHHHHHHHHhhhhcccc-cHHHHHHHHHHCCC----------CcCHHHHH-HHHHHHHcCCC
Q 010459          335 DLGDDLASRIGRTE----LVWCLRLLSHACLLSHR-GIDSVVREMESAKV----------RWNVTTAN-IILLAYLKMKD  398 (510)
Q Consensus       335 ~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~----------~p~~~~~~-~li~~~~~~g~  398 (510)
                      .+...+....+.|.    +.-|.++..-....-.+ .++..++.....-.          ....+..| .++..|  .+.
T Consensus       245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk  322 (652)
T KOG2376|consen  245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK  322 (652)
T ss_pred             HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence            88888877776664    23344443322222222 12222322221100          00111222 222222  233


Q ss_pred             hhHHHHHHHhhhhCCCCCCHHHHHHHHHhhh--hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHH
Q 010459          399 FKHLRVLLSELPTRHVKPDIVTIGILYDARR--IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY  476 (510)
Q Consensus       399 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  476 (510)
                      .+.+.++-....  +..|... +..++..+.  +.....++.+++.............+--..+..-...|+++.|.+++
T Consensus       323 ~~q~r~~~a~lp--~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il  399 (652)
T KOG2376|consen  323 MDQVRELSASLP--GMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL  399 (652)
T ss_pred             HHHHHHHHHhCC--ccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            344444444333  2234433 344444322  22245667777666533211111222333455677899999999999


Q ss_pred             h--------hcCCCCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459          477 S--------SLEPYSREKKRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       477 ~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  507 (510)
                      .        .+.+.+..|-.+  .+++..+.+.++.+-|
T Consensus       400 ~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a  436 (652)
T KOG2376|consen  400 SLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSA  436 (652)
T ss_pred             HHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccH
Confidence            9        777777778744  4777777777766544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.22  E-value=2.1e-06  Score=51.22  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 010459          245 ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL  277 (510)
Q Consensus       245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  277 (510)
                      .+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            355566666666666666666666666555554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.0017  Score=67.21  Aligned_cols=252  Identities=13%  Similarity=0.112  Sum_probs=178.6

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010459          110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK  189 (510)
Q Consensus       110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  189 (510)
                      ...+...+-+++|..+|+..      ..+....+.||.-   -+++++|.+.-++..      ....|..+..+-.+.|.
T Consensus      1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence            34455555666666666543      2344444555442   366777776666554      45679999999999999


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459          190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS  269 (510)
Q Consensus       190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  269 (510)
                      +.+|.+-|-+.      -|+..|..+|+...+.|.+++-.+.+....+..-+|.+.  +.+|-+|++.++..+..++.  
T Consensus      1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred             hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence            99998877543      267789999999999999999999888877766566554  57889999999887766554  


Q ss_pred             HHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchH
Q 010459          270 MLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTEL  349 (510)
Q Consensus       270 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  349 (510)
                           ..||......+-+-|...|.++.|.-+|...         .-|..|...+...|.+..|.+..+.     ..+..
T Consensus      1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRK-----Ans~k 1250 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARK-----ANSTK 1250 (1666)
T ss_pred             -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhh-----ccchh
Confidence                 2467777788888899999999888888654         3466677777777777777666433     34567


Q ss_pred             HHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       350 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      +|...-.+|...+.+.-|     +|....+.....-..-++.-|-..|-+++-+.+++.-.
T Consensus      1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            888887777766544322     34444444455666778888999999998888877654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=0.00024  Score=69.05  Aligned_cols=251  Identities=13%  Similarity=0.018  Sum_probs=188.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE  227 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  227 (510)
                      -+.+.|++.+|.-.|+...+... -+...|--|-.....+++-..|+.-+++.++.... |....-.|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence            35678999999999999988753 37889999999999999999999999999886533 67788888889999999999


Q ss_pred             HHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459          228 IDMCLKMMKLDGCS--------PDHITYNLLIQEFACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       228 a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      |++.|+.-.....+        ++...-+.  ..+.....+....++|-++. +.+..+|......|--.|--.|++++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            99999886543211        01110000  22333344556677777665 445345666666666668889999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH--
Q 010459          299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES--  376 (510)
Q Consensus       299 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--  376 (510)
                      ...|+..+... +-|..+||.|-..++...+..+|...+.+.....+.-+.++..|..+|...|.+++|.+.|-....  
T Consensus       450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999998765 557789999999999999999999999999999999999999999999999999999888865443  


Q ss_pred             -CC------CCcCHHHHHHHHHHHHcCCChhHHH
Q 010459          377 -AK------VRWNVTTANIILLAYLKMKDFKHLR  403 (510)
Q Consensus       377 -~g------~~p~~~~~~~li~~~~~~g~~~~A~  403 (510)
                       .+      ..++...|..|=.++.-.++.|.+.
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence             21      1223456666555555555555433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.0031  Score=61.02  Aligned_cols=90  Identities=11%  Similarity=0.069  Sum_probs=44.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH-------HH
Q 010459          248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR-------KL  320 (510)
Q Consensus       248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~l  320 (510)
                      ..+.++.-+..+++.|.+-+.......  -+..-++..-.+|...|...+....-....+.|... ..-|+       .+
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~  304 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHh
Confidence            345556666666777777776665543  133334444455555565555555444444433221 11111       12


Q ss_pred             HHHHHhhcchhHHHHHHHHH
Q 010459          321 AEVYIKNYMFSRLDDLGDDL  340 (510)
Q Consensus       321 i~~~~~~~~~~~a~~~~~~~  340 (510)
                      -.+|.+.+.++.+...++..
T Consensus       305 g~a~~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKA  324 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHH
Confidence            23455555666666555543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.16  E-value=0.00051  Score=60.43  Aligned_cols=161  Identities=7%  Similarity=-0.085  Sum_probs=110.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Q 010459          248 NLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN  327 (510)
Q Consensus       248 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  327 (510)
                      ..+-..+...|+-+....+........ .-|............+.|++..|...+.+..... ++|...++.+--+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            444555666666666666655543221 1133444456667777777777777777665543 66777777777777777


Q ss_pred             cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHH
Q 010459          328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLS  407 (510)
Q Consensus       328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  407 (510)
                      |+++.|...+.+.....+.++...|.+...+.-.|+.+.|..++......+.. |...-..+.-.....|++++|..+-.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence            77777777777777777777777888888888888888888888887777555 55566667777788888888888766


Q ss_pred             hhhh
Q 010459          408 ELPT  411 (510)
Q Consensus       408 ~m~~  411 (510)
                      .-..
T Consensus       227 ~e~~  230 (257)
T COG5010         227 QELL  230 (257)
T ss_pred             cccc
Confidence            5543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.16  E-value=9.4e-05  Score=61.20  Aligned_cols=92  Identities=9%  Similarity=-0.074  Sum_probs=48.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM  224 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  224 (510)
                      +...+.+.|++++|...|+...... +.+...|..+...+.+.|++++|...|+...+... .+..++..+..++.+.|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence            4444455555555555555555443 22445555555555555555555555555554332 244555555555555555


Q ss_pred             HHHHHHHHHHHHhC
Q 010459          225 YDEIDMCLKMMKLD  238 (510)
Q Consensus       225 ~~~a~~~~~~m~~~  238 (510)
                      .++|...|+...+.
T Consensus       108 ~~eAi~~~~~Al~~  121 (144)
T PRK15359        108 PGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.15  E-value=0.00068  Score=59.39  Aligned_cols=119  Identities=12%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCC--HHHH
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYKM--YDEI  228 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~a  228 (510)
                      .++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            344445544444444433 234555555555555555555555555555443321 34444444443 234444  2555


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      .+++++..+.. +.+...+..+-..+.+.|++++|...|+++.+.
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55555555443 224444555555555555555555555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.15  E-value=0.0018  Score=67.49  Aligned_cols=133  Identities=12%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459          137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP-SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL  215 (510)
Q Consensus       137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  215 (510)
                      .++..+-.|.....+.|..++|..+++...+.  .| +...+..+...+.+.+++++|+...++....... +......+
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            34555666666666667777777777766655  33 3445566666666777777777777666664422 34444555


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          216 IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       216 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      -.++.+.|++++|..+|++....+ +-+..+|..+-..+-..|+.++|...|+...+.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556666677777777777766532 233566666666666667777777777666543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.12  E-value=0.011  Score=57.57  Aligned_cols=375  Identities=10%  Similarity=0.018  Sum_probs=205.9

Q ss_pred             CCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459           99 GDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYN  178 (510)
Q Consensus        99 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  178 (510)
                      .+-|..+|+.+|+-+... ..+++++.++.+.  .-++-....|..-|..-.+..+++....+|.+-...  ..+...|.
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~   90 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK   90 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence            356888999999987666 9999999999997  455667788999999999999999999999998766  55788888


Q ss_pred             HHHHHHHh-cCChHH----HHHHHHH-HHHCCCCC-CHHHHHHHHHHH---------HccCCHHHHHHHHHHHHhCCCCC
Q 010459          179 SIIHGYSK-IGKFNE----ALLFLNE-MKEMNLSP-QSDTYDGLIQAY---------GKYKMYDEIDMCLKMMKLDGCSP  242 (510)
Q Consensus       179 ~li~~~~~-~g~~~~----a~~~~~~-m~~~g~~p-~~~t~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~  242 (510)
                      .-|+---+ .|+...    ..+-|+- |.+-|+.| ....|+..+...         ....+++...++++++...-+.-
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n  170 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN  170 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence            77764333 222222    2223332 23445443 223455555432         22335556777777765422110


Q ss_pred             CHHHHHH------HHHHH-------HHcCCHHHHHHHHHHHHH--CCCccCHHH---------------HHHHHH-----
Q 010459          243 DHITYNL------LIQEF-------ACAGLLKRMEGTYKSMLT--KRMHLRSST---------------MVAILD-----  287 (510)
Q Consensus       243 ~~~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~-----  287 (510)
                      =...|+-      =|+-.       -+...+..|.++++++..  .|..-+..+               |-.+|.     
T Consensus       171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN  250 (656)
T KOG1914|consen  171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN  250 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence            0111111      11100       112234445555444431  221111000               111111     


Q ss_pred             --------------------------------------------HHHhcCC-------hhHHHHHHHHHHhcCCCCCHHH
Q 010459          288 --------------------------------------------AYMNFGM-------LDKMEKFYKRLLNSRTPLKEDL  316 (510)
Q Consensus       288 --------------------------------------------~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~  316 (510)
                                                                  .+...|+       .+++..++++.+..-...+..+
T Consensus       251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L  330 (656)
T KOG1914|consen  251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL  330 (656)
T ss_pred             CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                        0111111       2223333333322111112222


Q ss_pred             HHHHHHHHHhh---cchhHHHHHHHHHHhhcC-CchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc-CHHHHHHHHH
Q 010459          317 VRKLAEVYIKN---YMFSRLDDLGDDLASRIG-RTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW-NVTTANIILL  391 (510)
Q Consensus       317 ~~~li~~~~~~---~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~  391 (510)
                      |.++.+---..   ...+........+..... ....+|...+..-.+..-.+.|..+|.+..+.+..+ ++..+++++.
T Consensus       331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE  410 (656)
T KOG1914|consen  331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME  410 (656)
T ss_pred             HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence            22211110000   012233333333333332 335667777777777777788888888888888766 6777777777


Q ss_pred             HHHcCCChhHHHHHHHhhh-hCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccc--cccChhHHHHHhhccCc
Q 010459          392 AYLKMKDFKHLRVLLSELP-TRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTV--EINTDPLVLAVYGKGHF  468 (510)
Q Consensus       392 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~  468 (510)
                      -||. ++..-|.++|+.=. +.|-  +..--...++-+..-++-..+..+|++......++  ....|..+++-=..-|+
T Consensus       411 y~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd  487 (656)
T KOG1914|consen  411 YYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD  487 (656)
T ss_pred             HHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence            6665 67788888888755 3432  22223345555556667778888888875443322  33557777777777888


Q ss_pred             hhHHHHHHhhcCC
Q 010459          469 LRYCEEVYSSLEP  481 (510)
Q Consensus       469 ~~~A~~~~~~m~~  481 (510)
                      +..+.++-+++..
T Consensus       488 L~si~~lekR~~~  500 (656)
T KOG1914|consen  488 LNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777766654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.10  E-value=0.00029  Score=58.25  Aligned_cols=96  Identities=6%  Similarity=-0.099  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  255 (510)
                      .+..+...+.+.|++++|...|+........ +..+|..+...+.+.|++++|...|++..+.. +.+...|..+-.++.
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~  103 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            3555667777788888888888887765432 66777777778888888888888888877664 446777777777788


Q ss_pred             HcCCHHHHHHHHHHHHHC
Q 010459          256 CAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~~  273 (510)
                      +.|++++|...|+...+.
T Consensus       104 ~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            888888888888877654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.09  E-value=0.00024  Score=62.19  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=83.6

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 010459          187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE-FACAGL--LKRM  263 (510)
Q Consensus       187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A  263 (510)
                      .++.+++...++...+... .|...|..|...|...|++++|...|++..+.. +.+...+..+..+ +...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            5566677767776666543 367777777777878888888888888777665 3466666666665 356666  4778


Q ss_pred             HHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       264 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      .+++++..+.+.. +..++..+...+...|++++|...++.+.+..
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            8888877766543 55667777777777888888888888777654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0013  Score=57.90  Aligned_cols=118  Identities=19%  Similarity=0.181  Sum_probs=56.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 010459          146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----  221 (510)
Q Consensus       146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----  221 (510)
                      ...|++.|++++|++......      +....-.=+..+.+..+++-|.+.+++|.+-.   +..|.+.|..+|.+    
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence            344555555555555544421      22222222333444455555555555554432   34444444444443    


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          222 YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      .+.+.+|.-+|++|.+.- .|+..+.+-+..++...|++++|..++++....
T Consensus       186 gek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             chhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            234555555555554321 355555555555555555555555555555544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.02  E-value=5.6e-06  Score=48.12  Aligned_cols=29  Identities=52%  Similarity=0.923  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMN  204 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g  204 (510)
                      +||+||++|++.|++++|.++|++|++.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            34444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.98  E-value=5.7e-05  Score=72.90  Aligned_cols=127  Identities=12%  Similarity=0.122  Sum_probs=75.1

Q ss_pred             hccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010459           96 QHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE-KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL  174 (510)
Q Consensus        96 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~  174 (510)
                      .+....+......+++.+....+.+++..++..++... ....-..|..++|..|.+.|..+.++.++..=...|+-||.
T Consensus        59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~  138 (429)
T PF10037_consen   59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN  138 (429)
T ss_pred             hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence            33444455555666666666666666666665555411 11122234446666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY  222 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  222 (510)
                      .|+|.||+.+.+.|++..|.++..+|..++...+..|+..-+..|.+.
T Consensus       139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            666666666666666666666666666555555556665555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.97  E-value=8.4e-06  Score=47.35  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          246 TYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555444

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.96  E-value=0.0058  Score=64.63  Aligned_cols=128  Identities=9%  Similarity=0.063  Sum_probs=77.3

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP---------  172 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---------  172 (510)
                      +...+..|+..+...+++++|.++.+.......-.+....+..+  .+.+.++.+++..+  .+...- ..         
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~  104 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEH  104 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhhc-ccccchhHHHH
Confidence            44577889999999999999999988655433333333444433  56666666665555  222210 11         


Q ss_pred             ----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          173 ----------SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       173 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                                +...+-.+..+|-+.|+.++|..+++++++.... |..+.|.+...|+.. ++++|..++.+..
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence                      1134445555666666666666666666665522 566666666666666 6666666666555

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.93  E-value=0.00047  Score=66.40  Aligned_cols=121  Identities=16%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK  223 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g  223 (510)
                      +|+..+...++++.|+.+|+++.+.  .|+  .+..|...+...++..+|.+++.+...... -|......-...+.+.+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence            3444444445566666666665544  233  223355555555555555555555554321 14444444445555555


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459          224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM  270 (510)
Q Consensus       224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  270 (510)
                      +.+.|+.+.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.+
T Consensus       249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            5566666665555442 123335555666666666666665555544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=0.0057  Score=58.75  Aligned_cols=116  Identities=15%  Similarity=0.009  Sum_probs=66.6

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhcCChhHH
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a  298 (510)
                      ...|+.++|+..++.+...- +-|...+......+.+.++.++|.+.++.+...  .|+ ......+-.++.+.|++.+|
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence            34566666666666665542 234444445556666666666666666666654  233 33444555666666666666


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459          299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDD  339 (510)
Q Consensus       299 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  339 (510)
                      ..+++...... +-|+..|..|-.+|...|+..++.....+
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            66666655443 44566666666666666666555554333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.012  Score=52.01  Aligned_cols=207  Identities=13%  Similarity=0.027  Sum_probs=133.3

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEA-VRAFQEMEGFALKPSLEIYNSIIHGYSK  186 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~~~~~~~~~li~~~~~  186 (510)
                      -+-++|...|......+-   +.  .+-.|.....-.+-.....-++.++- -++.+.+......-|......-...|+.
T Consensus        46 y~~raylAlg~~~~~~~e---I~--~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~  120 (299)
T KOG3081|consen   46 YMYRAYLALGQYQIVISE---IK--EGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH  120 (299)
T ss_pred             HHHHHHHHcccccccccc---cc--cccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc
Confidence            455667777765544332   22  33344444444333333334444443 3445555554444343333444457889


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 010459          187 IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKR  262 (510)
Q Consensus       187 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~  262 (510)
                      .|++++|++.....    -  +......=+..+.|..+.+.|.+.+++|.+.   -+..|.+-|..++.+    .+...+
T Consensus       121 ~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  121 DGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             CCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhh
Confidence            99999999988762    1  3334444455667888999999999999863   355566655555554    457889


Q ss_pred             HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459          263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF  330 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~  330 (510)
                      |.-+|++|-+. ..|+..+.+....++...|++++|..+++...... .-++.+...+|..-...|..
T Consensus       192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence            99999999764 57788999999999999999999999999998765 33455555555544444443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.92  E-value=0.0003  Score=60.35  Aligned_cols=106  Identities=19%  Similarity=0.326  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010459          135 SRINEFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS  209 (510)
Q Consensus       135 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  209 (510)
                      -..|-.+|..+|+.|.+.     |.++-....+..|.+.|++.|..+|+.||+.+=+.. +               .|..
T Consensus        43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~-f---------------vp~n  106 (228)
T PF06239_consen   43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGK-F---------------VPRN  106 (228)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCC-c---------------cccc
Confidence            455667777777777654     666667777777888888888888888887765421 1               1111


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459          210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL  259 (510)
Q Consensus       210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  259 (510)
                       .+.++-.-|  -.+-+-|.+++++|...|+-||..++..++..+.+.+.
T Consensus       107 -~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  107 -FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence             111111111  12334455666666666666666666666666555543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.91  E-value=0.008  Score=62.78  Aligned_cols=131  Identities=7%  Similarity=-0.141  Sum_probs=85.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHH
Q 010459          278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK-EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLL  356 (510)
Q Consensus       278 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  356 (510)
                      +...+..|.....+.|.+++|+.+++...+..  || ......+...+.+.+.+++|....+......+.+....+.+..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            45555556666666666666666666655542  33 2334455555566666666666666666666666666666666


Q ss_pred             HhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       357 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      .+...|+.++|.++|++....+.. +..++..+-.++-..|+.++|...|+...+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777777777778887774333 467777777778888888888888888765

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.91  E-value=0.00025  Score=53.85  Aligned_cols=78  Identities=21%  Similarity=0.322  Sum_probs=50.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSLEIYNSIIHGYSKIG--------KFNEALLFLNEMKEMNLSPQSDTYDG  214 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~t~~~  214 (510)
                      ..|.-+...+++...-.+|+.+++.|+ .|++.+|+.++.+-++..        +.-..+.+|++|...+++|+..||+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344445555777777777777777777 677777777776666543        23455666777777777777777777


Q ss_pred             HHHHHHc
Q 010459          215 LIQAYGK  221 (510)
Q Consensus       215 li~~~~~  221 (510)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            7766543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.011  Score=60.27  Aligned_cols=310  Identities=10%  Similarity=0.007  Sum_probs=169.1

Q ss_pred             hhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 010459           73 EHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEE  152 (510)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  152 (510)
                      ..|++++++..+.       +..         -|.-+=+.|...|.+++|.++-+.-.   .+ .=..||-.....+-..
T Consensus       812 eLgMlEeA~~lYr-------~ck---------R~DLlNKlyQs~g~w~eA~eiAE~~D---Ri-HLr~Tyy~yA~~Lear  871 (1416)
T KOG3617|consen  812 ELGMLEEALILYR-------QCK---------RYDLLNKLYQSQGMWSEAFEIAETKD---RI-HLRNTYYNYAKYLEAR  871 (1416)
T ss_pred             HHhhHHHHHHHHH-------HHH---------HHHHHHHHHHhcccHHHHHHHHhhcc---ce-ehhhhHHHHHHHHHhh
Confidence            4577777777765       211         23344455677888888888766321   11 1123444455555566


Q ss_pred             CCHHHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459          153 GLMEEAVRAFQEME----------GFA---------LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD  213 (510)
Q Consensus       153 g~~~~A~~~~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  213 (510)
                      +|.+.|++.|++-.          ...         -..|...|..--.-.-..|+.+.|+.+|...+         -|-
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~f  942 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYF  942 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhh
Confidence            77777777766421          110         01233444444444455677777777776653         345


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 010459          214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG  293 (510)
Q Consensus       214 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  293 (510)
                      ++++..|-.|+.++|-++-++-.      |....-.+.+.|-..|++.+|..+|-+.+         +|...|+.|-..+
T Consensus       943 s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd 1007 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEND 1007 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcC
Confidence            56677777788888887766543      55556677788888888888888887654         3333444332222


Q ss_pred             ---------------ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHH-----------hhcCCc
Q 010459          294 ---------------MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLA-----------SRIGRT  347 (510)
Q Consensus       294 ---------------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------~~~~~~  347 (510)
                                     +.-.|-..|++   .|..     ...-+..|-+.|.+.+|.++.-...           -....|
T Consensus      1008 ~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sD 1079 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSD 1079 (1416)
T ss_pred             HHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCC
Confidence                           22223333322   2211     1234556788888888876631111           112234


Q ss_pred             hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh-hCCCCCCHHHHH----
Q 010459          348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP-TRHVKPDIVTIG----  422 (510)
Q Consensus       348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~----  422 (510)
                      +...+.-..-+..+.++++|..++-..++         |.-.+.. |+...+.--.++-+.|. .+.-.|+..+-.    
T Consensus      1080 p~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1080 PKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence            44444444445555555666555544332         2222322 33334444444555554 333445555433    


Q ss_pred             HHHHhhhhcCccchHHHHHHHc
Q 010459          423 ILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       423 ~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      .+-..|.++|.+..|-+-|.+.
T Consensus      1150 qvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHHHhccchHHHHHHHhhh
Confidence            3334678888888887776655

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.90  E-value=0.0002  Score=69.15  Aligned_cols=124  Identities=11%  Similarity=0.100  Sum_probs=85.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 010459          134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF--ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT  211 (510)
Q Consensus       134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  211 (510)
                      +.+.+......+++.+....+++++..++-+....  ....-..|.+++|+.|.+.|..+.++++++.=...|+-||.+|
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            44556666677777777777777777777776654  1111223445777888888877888887777777777788888


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      +|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888877777777665555666666555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.87  E-value=0.00099  Score=54.48  Aligned_cols=60  Identities=13%  Similarity=0.055  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      .+..+...+.+.|++++|..+|++..+.. +.+...|..+-..|...|++++|...|+...
T Consensus        53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        53 YWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAI  112 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333333333344444444443333322 2223333333333334444444444443333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.87  E-value=0.01  Score=62.83  Aligned_cols=128  Identities=12%  Similarity=0.009  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------
Q 010459          137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ-------  208 (510)
Q Consensus       137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------  208 (510)
                      .+...+..|+..|...+++++|.++.+...+.  .|+.. .|-.+...+.+.++.+.+..+  .+... +..+       
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve  103 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE  103 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence            45677899999999999999999999977765  45443 233333356666665554444  22111 0111       


Q ss_pred             ------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          209 ------------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       209 ------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                                  ...+-.|..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|+.. ++++|.+++.+..
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence                        1233344444444555555555555555444 33444555555555555 5555555554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.85  E-value=0.0035  Score=64.99  Aligned_cols=55  Identities=16%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRA  161 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  161 (510)
                      .|..+-..|....+...|.+.|+...+  --..|...+....+.|++..+++.|..+
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHH
Confidence            344444445544455556666554431  1223445556666666666666666655

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.85  E-value=0.0003  Score=53.38  Aligned_cols=77  Identities=13%  Similarity=0.245  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          179 SIIHGYSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYK--------MYDEIDMCLKMMKLDGCSPDHITYNL  249 (510)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~~  249 (510)
                      ..|.-+...+++.....+|+.+++.|+ .|+..+|+.++...++..        ++-..+.+++.|...+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            444445555666666666666666666 666666666666665542        12234455555555555555555555


Q ss_pred             HHHHHH
Q 010459          250 LIQEFA  255 (510)
Q Consensus       250 li~~~~  255 (510)
                      ++..+.
T Consensus       110 vl~~Ll  115 (120)
T PF08579_consen  110 VLGSLL  115 (120)
T ss_pred             HHHHHH
Confidence            555443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.84  E-value=0.00021  Score=61.20  Aligned_cols=127  Identities=10%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010459          159 VRAFQEMEGFALKPSLEIYNSIIHGYSKI-----GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK  233 (510)
Q Consensus       159 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~  233 (510)
                      ...|+.....  ..|..+|..+|+.|.+.     |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+
T Consensus        34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ  109 (228)
T PF06239_consen   34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ  109 (228)
T ss_pred             HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence            3445554322  56788888888887754     5677777778888888888888888888887765 3322 111221


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 010459          234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGML-DKMEKFYKRLL  306 (510)
Q Consensus       234 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~m~  306 (510)
                      .+-               --|  -.+-+-|++++++|...|+.||..|+..+++.+.+.+.. .+..++.-.|.
T Consensus       110 ~~F---------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  110 AEF---------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             HHh---------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            111               111  234678999999999999999999999999999877653 23334433343

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.84  E-value=0.0025  Score=61.10  Aligned_cols=198  Identities=15%  Similarity=-0.014  Sum_probs=142.2

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      |+...+...+.+.........+..++....+   ..-..--|..-+ .+...|++++|+..++.+.+.- +-|...+...
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~  346 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA  346 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4445556666665555555555544443322   122223343333 3447899999999999988763 3466777778


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL  259 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  259 (510)
                      ...+.+.++..+|.+.++.+...  .|+ ....-.+-.+|.+.|+..+|.++++...... +-|...|..|-.+|...|+
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence            88999999999999999999885  455 5666778899999999999999999988765 5689999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 010459          260 LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR--TPLKEDLVRKLAEVY  324 (510)
Q Consensus       260 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~  324 (510)
                      ..++..-..++.                  ...|++++|...+....+..  ..|+..=+...|+..
T Consensus       424 ~~~a~~A~AE~~------------------~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~  472 (484)
T COG4783         424 RAEALLARAEGY------------------ALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL  472 (484)
T ss_pred             hHHHHHHHHHHH------------------HhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            999988877654                  34678888888887777542  234444445555543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.82  E-value=0.037  Score=57.87  Aligned_cols=163  Identities=8%  Similarity=-0.043  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQSDTYDGLIQA  218 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~  218 (510)
                      ..|..|-..|+...+...|...|+..-+.+ .-+...+-...+.|+...+++.|.++.-.--+.. ...-..-|..+--.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            678889999999999999999999998765 3367889999999999999999999843332211 11112233334445


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH--HHHHHhcCChh
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI--LDAYMNFGMLD  296 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~~~~~~g~~~  296 (510)
                      |.+.++...|..-|+...+.. +.|...|..+..+|.+.|++..|.++|.+....  +|+. +|...  .-.-+..|.+.
T Consensus       572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk  647 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK  647 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence            677888999999998887665 458899999999999999999999999887765  3332 33322  22345678899


Q ss_pred             HHHHHHHHHHh
Q 010459          297 KMEKFYKRLLN  307 (510)
Q Consensus       297 ~a~~~~~~m~~  307 (510)
                      ++...+..+..
T Consensus       648 eald~l~~ii~  658 (1238)
T KOG1127|consen  648 EALDALGLIIY  658 (1238)
T ss_pred             HHHHHHHHHHH
Confidence            99888887764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.82  E-value=0.0015  Score=53.31  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      +......+...+.+.|++++|.+.|+.....+ +.+...|..+...+.+.|++++|...|++..+.+ ..+..++..+-.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~   93 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE   93 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            33455667777778888888888888887654 3467778888888888888888888888876654 335667777777


Q ss_pred             HHHccCCHHHHHHHHHHHHhC
Q 010459          218 AYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      .|...|+.++|...|+...+.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            888888888888888887765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.77  E-value=0.002  Score=53.44  Aligned_cols=113  Identities=17%  Similarity=0.115  Sum_probs=50.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCH
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS--DTYDGLIQAYGKYKMY  225 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~  225 (510)
                      .++...+...++.+.+..  |+.    ...-.+-..+...|++++|.+.|+........|+.  ...-.|...+...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            455555555555555432  111    11122234445555555555555555554422211  1223344445555555


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459          226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  268 (510)
                      ++|+..++......  .....+...-+.|.+.|+.++|...|+
T Consensus       102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen  102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55555554433221  122333344455555555555555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.046  Score=53.29  Aligned_cols=368  Identities=14%  Similarity=0.046  Sum_probs=225.5

Q ss_pred             HHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 010459          111 RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIGK  189 (510)
Q Consensus       111 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~  189 (510)
                      .+....|+++.|...|.....  --++|...|+.-..+|++.|++++|++=-.+-.+.  .|+ .-.|+-.-.++.-.|+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence            456788999999999998764  33558889999999999999999998766665544  555 4578899999999999


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH------HHHhC---CCCCCHHHHHHHHHHHHHc---
Q 010459          190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK------MMKLD---GCSPDHITYNLLIQEFACA---  257 (510)
Q Consensus       190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~------~m~~~---g~~~~~~~~~~li~~~~~~---  257 (510)
                      +++|+.-|.+=++.... +...++-|..++...  . .+.+.|.      .+...   ........|..++..+-++   
T Consensus        86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~  161 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS  161 (539)
T ss_pred             HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence            99999999988775432 667777888877211  0 1111111      11000   0001112233333332221   


Q ss_pred             -------CCHHHHHHHHHH-----HHHC-------CCcc------------C----------HHHHHHHHHHHHhcCChh
Q 010459          258 -------GLLKRMEGTYKS-----MLTK-------RMHL------------R----------SSTMVAILDAYMNFGMLD  296 (510)
Q Consensus       258 -------g~~~~A~~~~~~-----m~~~-------g~~p------------~----------~~t~~~ll~~~~~~g~~~  296 (510)
                             .+...|...+..     +...       +..|            |          ..-...+.++.-+..+++
T Consensus       162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~  241 (539)
T KOG0548|consen  162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE  241 (539)
T ss_pred             hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence                   111222211110     0001       1111            0          122455667777778888


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH-------HHHHHhhhhcccccHHH
Q 010459          297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC-------LRLLSHACLLSHRGIDS  369 (510)
Q Consensus       297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~  369 (510)
                      .+.+-+....+..  .+..-++..-.+|...|.+.++...-............-++       .+..+|...++.+.+..
T Consensus       242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~  319 (539)
T KOG0548|consen  242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK  319 (539)
T ss_pred             HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence            8888888887765  55566677777888887776665554333322222222222       23346666778888888


Q ss_pred             HHHHHHHCCCCcCHHHH-------------------------HHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHH
Q 010459          370 VVREMESAKVRWNVTTA-------------------------NIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGI  423 (510)
Q Consensus       370 ~~~~m~~~g~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~  423 (510)
                      .|.+.......||..+-                         -.--..+.+.|++..|+..|.++++..  | |...|.-
T Consensus       320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsN  397 (539)
T KOG0548|consen  320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSN  397 (539)
T ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHH
Confidence            88887665555554321                         111234678899999999999999764  6 5566777


Q ss_pred             HHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhc-------cCchhHHHHHHhhcCCCCCCCCcccHHHHHH
Q 010459          424 LYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK-------GHFLRYCEEVYSSLEPYSREKKRWTYQNLID  496 (510)
Q Consensus       424 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  496 (510)
                      ---+|.+.|.+..|++--+.....        .+..+.+|.|       ..+++.|.+.|.+-.+  ..|+..-+..-+.
T Consensus       398 RAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~  467 (539)
T KOG0548|consen  398 RAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYR  467 (539)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence            777888888888888876665443        2223444444       4567777778877766  4566554443343


Q ss_pred             HHHh
Q 010459          497 LVIK  500 (510)
Q Consensus       497 ~~~~  500 (510)
                      -|..
T Consensus       468 rc~~  471 (539)
T KOG0548|consen  468 RCVE  471 (539)
T ss_pred             HHHH
Confidence            3433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.61  E-value=0.0026  Score=61.31  Aligned_cols=122  Identities=11%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459          249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY  328 (510)
Q Consensus       249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  328 (510)
                      +++..+...++++.|.++|+++.+..  |+  ....+++.+...++-.+|.+++.+..+.. +-+......-.+.+.+.+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            44444555566666666666666553  33  22335555555555566666665555332 223333333333333333


Q ss_pred             chhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHh
Q 010459          329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSE  408 (510)
Q Consensus       329 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  408 (510)
                      +.                                  +.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.
T Consensus       249 ~~----------------------------------~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  249 KY----------------------------------ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             CH----------------------------------HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            33                                  3344444444443222 344666666666666666666666666


Q ss_pred             hh
Q 010459          409 LP  410 (510)
Q Consensus       409 m~  410 (510)
                      +.
T Consensus       294 ~P  295 (395)
T PF09295_consen  294 CP  295 (395)
T ss_pred             Cc
Confidence            54

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.61  E-value=0.0033  Score=52.10  Aligned_cols=126  Identities=15%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL--EIYNS  179 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~  179 (510)
                      .|..++..+ ..++...+.+.++.+...  .+.+   ....-.+...+...|++++|...|+........|+.  ...-.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            566677766 478888898889988752  2223   233334557888999999999999999987533322  34556


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010459          180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM  235 (510)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m  235 (510)
                      |...+...|++++|+..++......  .....+...-+.|.+.|+.++|...|+..
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            7788999999999999997754333  34557778899999999999999999763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.57  E-value=0.14  Score=53.20  Aligned_cols=198  Identities=12%  Similarity=0.095  Sum_probs=87.0

Q ss_pred             HHHHHHH--HhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          107 WAVIRFL--KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       107 ~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      ..+++++  .+.|+.++|..+++.... .+.. |..|...+-.+|...++.++|..+|+...+.  -|+......+..+|
T Consensus        45 a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay  120 (932)
T KOG2053|consen   45 AKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY  120 (932)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence            3444443  345566666655554432 1211 5555556666666666666666666665544  34455555555555


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK----------MYDEIDMCLKMMKLDG-CSPDHITYNLLIQE  253 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~  253 (510)
                      ++.+.+.+-.+.=-+|-+ .+.-+...+=++++.+...-          -+..|.+.++.+.+.+ -.-+..=.-.-...
T Consensus       121 vR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i  199 (932)
T KOG2053|consen  121 VREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI  199 (932)
T ss_pred             HHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence            555544332222111111 11223344444444443321          1223445555554432 11111111111223


Q ss_pred             HHHcCCHHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          254 FACAGLLKRMEGTYKSML-TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      .-..|++++|++++..=. +.-..-+...-+--+..+...+++.+..++-.++...|
T Consensus       200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            334555666666553222 22122233333344455555566666666655555554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.56  E-value=0.14  Score=53.16  Aligned_cols=170  Identities=8%  Similarity=-0.053  Sum_probs=107.5

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII  181 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  181 (510)
                      |..|...+-..|.+.++.++|..+|++..   +..|+......+..+|.+.+++.+-.++=-+|-+. .+.+...+=+++
T Consensus        76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~  151 (932)
T KOG2053|consen   76 DDLTLQFLQNVYRDLGKLDEAVHLYERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVI  151 (932)
T ss_pred             chHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHH
Confidence            66778888888888899999999998775   34567777788888888887776543333333332 122444444555


Q ss_pred             HHHHhcCC----------hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH-HHHhCCCCCCHHHHHH
Q 010459          182 HGYSKIGK----------FNEALLFLNEMKEMN-LSPQSDTYDGLIQAYGKYKMYDEIDMCLK-MMKLDGCSPDHITYNL  249 (510)
Q Consensus       182 ~~~~~~g~----------~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~  249 (510)
                      +.+.+...          ..-|.+.++.+.+.+ -.-+..-...-.......|++++|..++. ...+.-..-+...-+.
T Consensus       152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~  231 (932)
T KOG2053|consen  152 SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK  231 (932)
T ss_pred             HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH
Confidence            55555432          224556666666554 21122222333344556788888888883 3333333445555566


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010459          250 LIQEFACAGLLKRMEGTYKSMLTKRM  275 (510)
Q Consensus       250 li~~~~~~g~~~~A~~~~~~m~~~g~  275 (510)
                      -++.+...+++.+..++-.++...|.
T Consensus       232 ~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  232 KLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            77888888899988888888887764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.53  E-value=0.0031  Score=58.62  Aligned_cols=130  Identities=10%  Similarity=0.015  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG-YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA  218 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  218 (510)
                      .+|..++...-+.+.++.|+.+|.+..+.+. .+...|-..... |...++.+.|.++|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            3566666666677677777777777764321 122333333222 22245556677777776554 34466667777777


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDH----ITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +.+.++.+.|..+|++....  .+..    ..|...|.-=.+.|+.+.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777776644  2222    46777777777777777777777766653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.52  E-value=0.0024  Score=47.72  Aligned_cols=21  Identities=14%  Similarity=0.063  Sum_probs=8.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHH
Q 010459          248 NLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       248 ~~li~~~~~~g~~~~A~~~~~  268 (510)
                      ..+...+...|++++|...+.
T Consensus        72 ~~~~~~~~~~~~~~~a~~~~~   92 (100)
T cd00189          72 YNLGLAYYKLGKYEEALEAYE   92 (100)
T ss_pred             HHHHHHHHHHHhHHHHHHHHH
Confidence            333333333344444433333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.51  E-value=0.077  Score=48.84  Aligned_cols=192  Identities=10%  Similarity=-0.039  Sum_probs=84.7

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 010459          110 IRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY-NSIIHGYSKIG  188 (510)
Q Consensus       110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g  188 (510)
                      -+.+...|++..|+.-|....  .+.+-+-.++-.-...|...|+-..|+.=++...+.  +||...- ----..+.+.|
T Consensus        45 Gk~lla~~Q~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   45 GKELLARGQLSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG  120 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence            344444555555555554333  121111112222233455555555555555555543  4443211 11112344556


Q ss_pred             ChHHHHHHHHHHHHCCCCC--CHHHH------------HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          189 KFNEALLFLNEMKEMNLSP--QSDTY------------DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF  254 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p--~~~t~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  254 (510)
                      .+++|..=|+..+.....-  ....+            ...+..+.-.|+...|......+.+.. +.|...+..-..+|
T Consensus       121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY  199 (504)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence            6666666666555543210  01111            111222333455555555555555443 34555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      ...|++..|+.=++...+..-. ++.++--+-..+...|+.+.++...++.++
T Consensus       200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            5556555555444443322111 333444444445555555555555555444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.46  E-value=0.006  Score=48.31  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=8.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHH
Q 010459          180 IIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m  200 (510)
                      +...+.+.|++++|.+.|+..
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHH
Confidence            333444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.46  E-value=0.0015  Score=60.67  Aligned_cols=143  Identities=12%  Similarity=0.164  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      .+|-.+++..-+.+..+.|+++|....+......+++...+++..+ -.++.+.|..+|+...+. +..+...|..-++-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            3688899999999999999999999985333445555555555443 356788899999998876 45678899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      +...++.+.|..+|++.... + |..    ..|...+..=.+.|+++.+.++.+++.+.  -|+......+++
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~  148 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD  148 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred             HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence            99999999999999999765 3 333    48999999999999999999999998865  445333333444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.45  E-value=0.093  Score=48.34  Aligned_cols=174  Identities=11%  Similarity=0.048  Sum_probs=129.2

Q ss_pred             ccCCCChhhHHHHH---HHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010459           97 HDGDWTKDHFWAVI---RFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQ-KIIGMLCEEGLMEEAVRAFQEMEGFALKP  172 (510)
Q Consensus        97 ~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~  172 (510)
                      ..++-|+..|.++.   ..|...|+...|+.=+++..+   ++||-..-. ---..+.+.|.++.|..=|+...+.  .|
T Consensus        63 aAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~--~~  137 (504)
T KOG0624|consen   63 AAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH--EP  137 (504)
T ss_pred             HHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc--CC
Confidence            34566777777665   468889999999988887754   577754322 1224577899999999999999987  34


Q ss_pred             CHH----H----------H--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          173 SLE----I----------Y--NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       173 ~~~----~----------~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      +..    .          |  ...+..+...|+...|++....+++-. .-|...|..-..+|...|++..|..=++...
T Consensus       138 s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as  216 (504)
T KOG0624|consen  138 SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQAS  216 (504)
T ss_pred             CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            211    1          1  233445667899999999999998853 2388888889999999999999988887776


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 010459          237 LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS  279 (510)
Q Consensus       237 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  279 (510)
                      +.. .-|..++--+-..+-..|+.+.++...++..+.  .||.
T Consensus       217 kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH  256 (504)
T KOG0624|consen  217 KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH  256 (504)
T ss_pred             hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence            654 345666667777888999999999999988865  4554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.43  E-value=0.0031  Score=47.06  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459          212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN  291 (510)
Q Consensus       212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  291 (510)
                      +..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+........ +..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence            4456666777788888888888877653 234466777778888888888888888887765422 44577777788888


Q ss_pred             cCChhHHHHHHHHHHhc
Q 010459          292 FGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       292 ~g~~~~a~~~~~~m~~~  308 (510)
                      .|+.+.|...+....+.
T Consensus        81 ~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          81 LGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHhHHHHHHHHHHHHcc
Confidence            88888888888776643

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.40  E-value=0.12  Score=48.68  Aligned_cols=23  Identities=9%  Similarity=0.244  Sum_probs=18.6

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFD  127 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~  127 (510)
                      +|..+.......|+.+.|..+.+
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~   24 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLE   24 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHH
Confidence            56777788888899999888876

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.38  E-value=0.0089  Score=47.32  Aligned_cols=98  Identities=11%  Similarity=0.026  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLS--PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLLI  251 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li  251 (510)
                      ++..+...+.+.|++++|.+.|..+.+....  .....+..+...+.+.|+++.|...|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3444555556666666666666666543211  11234445666666666666666666666543211  1134455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHC
Q 010459          252 QEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       252 ~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      ..+.+.|+.++|.+.+++..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            6666666666666666666655

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.28  E-value=0.018  Score=49.30  Aligned_cols=129  Identities=16%  Similarity=0.136  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      ..+..+...|...|++++|...|++..+....++  ...|..+...+.+.|++++|.+.+++..+.... +...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence            4566677777778888888888888775432222  356777778888888888888888877764322 4555666666


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                      .|...|+...+..-++...                     ..+++|.+++++....+  |+  .|..++..+...|+
T Consensus       115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~  166 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence            6766666554443333222                     12566666666665542  22  35555555554443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.27  E-value=0.021  Score=48.89  Aligned_cols=130  Identities=12%  Similarity=0.044  Sum_probs=85.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL  250 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  250 (510)
                      ....|..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            345677777888888999999999998876543332  3577888888888899999999888887653 2356666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459          251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY  328 (510)
Q Consensus       251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  328 (510)
                      ...|...|+...+..-++....                     .+++|.+++....+.+  |+.  +..++.-+...|
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p~~--~~~~~~~~~~~~  165 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--PNN--YIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--chh--HHHHHHHHHhcC
Confidence            6777777776665544433221                     2566777777766543  322  444444444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.26  E-value=0.0083  Score=51.16  Aligned_cols=94  Identities=12%  Similarity=-0.081  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP--QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI  251 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  251 (510)
                      ...|..+...+...|++++|+..|++.......|  ...++..+-..|.+.|+.++|...++...+.. +....++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            4455556666666666666666666665442222  12356666666666677777776666665442 22334444444


Q ss_pred             HHHH-------HcCCHHHHHHHHH
Q 010459          252 QEFA-------CAGLLKRMEGTYK  268 (510)
Q Consensus       252 ~~~~-------~~g~~~~A~~~~~  268 (510)
                      ..+.       ..|+++.|+..++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHH
Confidence            4444       5555554444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.23  E-value=0.071  Score=48.36  Aligned_cols=190  Identities=11%  Similarity=0.063  Sum_probs=91.9

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS---QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      .....+.+.|++++|.+.|+.+.....  -+...-   -.+..+|-+.+++++|...|++..+....-...-|...+.+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP--~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            334444556777777777777664211  111221   234556666777777777777776653222223343444443


Q ss_pred             HhcCChHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010459          185 SKIGKFNEALLFLNEMKEM-NLSPQ-------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC  256 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~-g~~p~-------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  256 (510)
                      +....-   ...|...... ....|       ..++..+|+-|=...-..+|...+..+...    =...--.+..-|.+
T Consensus       115 ~~~~~~---~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~  187 (243)
T PRK10866        115 TNMALD---DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTK  187 (243)
T ss_pred             hhhhcc---hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            310000   0000000000 00000       012233444444444445555444444311    01111134455777


Q ss_pred             cCCHHHHHHHHHHHHHC--CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          257 AGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       257 ~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      .|.+..|..-|+.+.+.  +.+........++.+|...|..++|.++...+.
T Consensus       188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            78888888888777754  222334566667778888888887777665543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.14  Score=45.35  Aligned_cols=203  Identities=12%  Similarity=0.107  Sum_probs=135.9

Q ss_pred             CCCCcHHHHHHHHHhh--cC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChH
Q 010459          117 SRSRQIPQVFDMWKNI--EK-SRINEFN-SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI-IHGYSKIGKFN  191 (510)
Q Consensus       117 g~~~~a~~~~~~~~~~--~~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~  191 (510)
                      .+.++..+++..+...  .| ..++.++ |.-++-+...+|+.+.|...++++...=  |...--..| .--+-..|+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence            4556666666655432  23 5566654 6677778888999999999999987662  332211111 11234578999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       192 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      +|.++++..++.+ +.|.+++--=+...-..|+--+|.+-+....+. +.-|...|.-+-..|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999999887 347777766565666677777887777776643 25699999999999999999999999999998


Q ss_pred             HCCCccCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459          272 TKRMHLRSSTMVAILDAYMN---FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY  328 (510)
Q Consensus       272 ~~g~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  328 (510)
                      -... .+..-+..+...+.-   ..+++.+++.|.+..+...    .-..++...|..+.
T Consensus       182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~----~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP----KNLRALFGIYLCGS  236 (289)
T ss_pred             HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh----HhHHHHHHHHHHHH
Confidence            6531 244444445444433   3456778888888876542    33344444454443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.18  E-value=0.082  Score=52.68  Aligned_cols=41  Identities=20%  Similarity=0.181  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010459          192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMM  235 (510)
Q Consensus       192 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m  235 (510)
                      +...-+++|++.|-.|+...   +...++-.|++.+|-++|.+-
T Consensus       618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence            33444667777777777643   334455567777877777643

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.16  Score=44.86  Aligned_cols=163  Identities=15%  Similarity=0.163  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYS  185 (510)
Q Consensus       106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  185 (510)
                      |.-++-+....|+.+.|..+++.+..  .++-+..+--.-.-.+-..|++++|.++++.+.+.+ +.|.++|--=+...-
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~--~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRD--RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence            34455566778999999999999875  333232222212222445699999999999999886 557788887777777


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC---CHH
Q 010459          186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD-HITYNLLIQEFACAG---LLK  261 (510)
Q Consensus       186 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g---~~~  261 (510)
                      ..|+.-+|++-+.+..+. +.-|...|.-|-..|...|+++.|.-.++++.-.  .|. ..-+..+-+.+--.|   +.+
T Consensus       132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            788888898888888776 4569999999999999999999999999999865  344 444444544443333   566


Q ss_pred             HHHHHHHHHHHCC
Q 010459          262 RMEGTYKSMLTKR  274 (510)
Q Consensus       262 ~A~~~~~~m~~~g  274 (510)
                      .|.+.|.+-.+..
T Consensus       209 ~arkyy~~alkl~  221 (289)
T KOG3060|consen  209 LARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHHHhC
Confidence            7888888877653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.05  E-value=0.016  Score=55.98  Aligned_cols=87  Identities=20%  Similarity=0.176  Sum_probs=42.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  228 (510)
                      +...|++++|++.|++..+... .+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence            3344555555555555554431 23444445555555555555555555555443211 334444444555555555555


Q ss_pred             HHHHHHHHh
Q 010459          229 DMCLKMMKL  237 (510)
Q Consensus       229 ~~~~~~m~~  237 (510)
                      ...|++..+
T Consensus        90 ~~~~~~al~   98 (356)
T PLN03088         90 KAALEKGAS   98 (356)
T ss_pred             HHHHHHHHH
Confidence            555555444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.04  E-value=0.0011  Score=49.07  Aligned_cols=16  Identities=38%  Similarity=0.659  Sum_probs=5.9

Q ss_pred             HHHHhcCChHHHHHHH
Q 010459          182 HGYSKIGKFNEALLFL  197 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~  197 (510)
                      .+|.+.|++++|.+++
T Consensus        33 ~~~~~~~~y~~A~~~~   48 (84)
T PF12895_consen   33 QCYFQQGKYEEAIELL   48 (84)
T ss_dssp             HHHHHTTHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHH
Confidence            3333333333333333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.01  E-value=0.027  Score=47.94  Aligned_cols=96  Identities=15%  Similarity=0.075  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP--SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL  215 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  215 (510)
                      ....|..+...+...|++++|+..|++.......+  ...+|..+-..|...|+.++|++.+++...... ....++..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence            34566777778888899999999999887653222  235788888899999999999999988876532 234556666


Q ss_pred             HHHHH-------ccCCHHHHHHHHHH
Q 010459          216 IQAYG-------KYKMYDEIDMCLKM  234 (510)
Q Consensus       216 i~~~~-------~~g~~~~a~~~~~~  234 (510)
                      ...+.       +.|+++.|...+++
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            66666       66676655554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.00  E-value=0.00097  Score=49.33  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=42.1

Q ss_pred             cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010459          187 IGKFNEALLFLNEMKEMNLS-PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEG  265 (510)
Q Consensus       187 ~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  265 (510)
                      .|+++.|+.+|+++.+.... |+...+-.+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666666666666554321 2333444466666666666666666665 2111 1122333334556666666666666


Q ss_pred             HHHH
Q 010459          266 TYKS  269 (510)
Q Consensus       266 ~~~~  269 (510)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.97  E-value=0.12  Score=48.19  Aligned_cols=204  Identities=13%  Similarity=0.142  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SR-I--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      .|......|...|++++|.+.|........ .. +  -...|.....+|-+. ++++|.+.               |...
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~---------------~~~A  100 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC---------------YEKA  100 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH---------------HHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH---------------HHHH
Confidence            556677778888888888888876543110 00 0  001122222222222 33333333               3334


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMYDEIDMCLKMMKL----DGCSPD--HITYNLLIQE  253 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~  253 (510)
                      +..|...|++..|-+.+..               +-..|-+. |+++.|...|++..+    .| .+.  ..++..+...
T Consensus       101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen  101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL  164 (282)
T ss_dssp             HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence            4556666666666555544               44466666 788888888877653    22 111  3455667788


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCC-----ccCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCC--HHHHHHHHHH
Q 010459          254 FACAGLLKRMEGTYKSMLTKRM-----HLRSS-TMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLK--EDLVRKLAEV  323 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~g~-----~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~li~~  323 (510)
                      +.+.|++++|.++|++....-.     +++.. .|...+-.+...||+..|.+.+++....  ++..+  -.....|+.+
T Consensus       165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A  244 (282)
T PF14938_consen  165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA  244 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence            8899999999999998876432     22222 2333444666778999999999887643  33333  2344555665


Q ss_pred             HHhhcchhHHHHHHHHHH
Q 010459          324 YIKNYMFSRLDDLGDDLA  341 (510)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~  341 (510)
                      |- .++.+.......++.
T Consensus       245 ~~-~~D~e~f~~av~~~d  261 (282)
T PF14938_consen  245 YE-EGDVEAFTEAVAEYD  261 (282)
T ss_dssp             HH-TT-CCCHHHHCHHHT
T ss_pred             HH-hCCHHHHHHHHHHHc
Confidence            53 344444444433333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.94  E-value=0.024  Score=46.62  Aligned_cols=91  Identities=13%  Similarity=0.049  Sum_probs=61.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM  224 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  224 (510)
                      +-.-+...|++++|..+|+.+...+.. +..-|-.|--.+-..|++++|+..|.......+. |..++-.+-.++.+.|+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence            344455667777777777777665422 5556666777777777777777777777665543 66666667777777777


Q ss_pred             HHHHHHHHHHHHh
Q 010459          225 YDEIDMCLKMMKL  237 (510)
Q Consensus       225 ~~~a~~~~~~m~~  237 (510)
                      .+.|.+.|+....
T Consensus       119 ~~~A~~aF~~Ai~  131 (157)
T PRK15363        119 VCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.94  E-value=0.026  Score=54.49  Aligned_cols=87  Identities=10%  Similarity=-0.057  Sum_probs=40.4

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE  192 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  192 (510)
                      +...|++++|.+.|+...+  -.+-+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++
T Consensus        12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence            3344455555555554442  122233444444445555555555555555554432 1134444444445555555555


Q ss_pred             HHHHHHHHHH
Q 010459          193 ALLFLNEMKE  202 (510)
Q Consensus       193 a~~~~~~m~~  202 (510)
                      |+..|++..+
T Consensus        89 A~~~~~~al~   98 (356)
T PLN03088         89 AKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.035  Score=49.06  Aligned_cols=158  Identities=8%  Similarity=0.028  Sum_probs=112.0

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI  187 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  187 (510)
                      -+++-+-.....+.-.+.|+.=        -.++-++++....-.|.+.-....+.+..+...+.+++....|.+.-.+.
T Consensus       154 ~ii~~~e~~~~~ESsv~lW~KR--------l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~  225 (366)
T KOG2796|consen  154 KILANLEQGLAEESSIRLWRKR--------LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI  225 (366)
T ss_pred             HHHHHHHhccchhhHHHHHHHH--------HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc
Confidence            3444444443445556666532        23566777788778888888888888888877677888888888888899


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459          188 GKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-----YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       188 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  262 (510)
                      ||.+.|...|++..+..-+.|..+++.++..     |.-.+++.+|...|.++.... +.|.+.-|.-.-+..-.|+..+
T Consensus       226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~D  304 (366)
T KOG2796|consen  226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKD  304 (366)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHH
Confidence            9999999999877665445555566555443     445678888888888887665 4566666655555666788999


Q ss_pred             HHHHHHHHHHCC
Q 010459          263 MEGTYKSMLTKR  274 (510)
Q Consensus       263 A~~~~~~m~~~g  274 (510)
                      |++..+.|.+.-
T Consensus       305 AiK~~e~~~~~~  316 (366)
T KOG2796|consen  305 ALKQLEAMVQQD  316 (366)
T ss_pred             HHHHHHHHhccC
Confidence            999999998764

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.65  Score=47.51  Aligned_cols=110  Identities=10%  Similarity=0.021  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459          348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA  427 (510)
Q Consensus       348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~  427 (510)
                      ..+.+-.+.-+...|+-.+|.++-.+.+-    ||-..|-.-+.+++..++|++-+++-+.++.      +.-|.-++.+
T Consensus       684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~  753 (829)
T KOG2280|consen  684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEA  753 (829)
T ss_pred             cCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHH
Confidence            44455555666666777777766655443    6888888888999999999988777766652      4556677888


Q ss_pred             hhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHH
Q 010459          428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVY  476 (510)
Q Consensus       428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  476 (510)
                      |.+.|+.++|.+++-+....         .-...+|.+.|++.+|.++-
T Consensus       754 c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  754 CLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence            99999999999998776332         24567888888888876654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.84  E-value=0.0045  Score=43.46  Aligned_cols=23  Identities=35%  Similarity=0.342  Sum_probs=8.6

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHH
Q 010459          214 GLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       214 ~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      .+..+|.+.|++++|..+++.+.
T Consensus        30 ~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen   30 LLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333333333333333333333

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.79  E-value=0.017  Score=47.87  Aligned_cols=70  Identities=19%  Similarity=0.152  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCccCHHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-----TKRMHLRSST  281 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t  281 (510)
                      +...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+.     +.|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34555666666777777777777766554 4466677777777777777777777776653     2366666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.78  E-value=0.11  Score=41.10  Aligned_cols=87  Identities=18%  Similarity=0.095  Sum_probs=39.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH
Q 010459          183 GYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD----HITYNLLIQEFAC  256 (510)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~  256 (510)
                      ++-..|+.++|+.+|++..+.|...+  ...+-.+-..+...|++++|..+|++.....  |+    ......+..++..
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence            33445555555555555555554332  2233344444555555555555555554331  22    1111112234445


Q ss_pred             cCCHHHHHHHHHHHH
Q 010459          257 AGLLKRMEGTYKSML  271 (510)
Q Consensus       257 ~g~~~~A~~~~~~m~  271 (510)
                      .|+.++|++.+-...
T Consensus        88 ~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   88 LGRPKEALEWLLEAL  102 (120)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            555555555554433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.71  E-value=0.029  Score=44.78  Aligned_cols=84  Identities=12%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 010459          209 SDTYDGLIQAYGKYKMYDEIDMCLKMMK---------------LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-  272 (510)
Q Consensus       209 ~~t~~~li~~~~~~g~~~~a~~~~~~m~---------------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-  272 (510)
                      ..++.++|.++++.|+++...++++..-               .....|+..+..+++.+|+.+|++..|+++.+...+ 
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3455555555555555555555554431               123346777777777777777777777777776653 


Q ss_pred             CCCccCHHHHHHHHHHHHhc
Q 010459          273 KRMHLRSSTMVAILDAYMNF  292 (510)
Q Consensus       273 ~g~~p~~~t~~~ll~~~~~~  292 (510)
                      -+++.+..+|..|+.-+...
T Consensus        82 Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   82 YPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             cCCCCCHHHHHHHHHHHHHh
Confidence            35666666777766655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.71  E-value=0.15  Score=51.80  Aligned_cols=136  Identities=13%  Similarity=0.033  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc--------CCHHHHHHHHHHH
Q 010459          170 LKPSLEIYNSIIHGYSKIG-----KFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKY--------KMYDEIDMCLKMM  235 (510)
Q Consensus       170 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~--------g~~~~a~~~~~~m  235 (510)
                      .+.|...|...+++.....     +.+.|.++|++..+..  || ...|..+..+|...        .++..+.+..++.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            4567788888888765432     2668888888888754  44 34444433333221        1233444444443


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          236 KLD-GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       236 ~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      ... ....+...|.++--.+...|++++|...+++....+  |+...|..+...+...|+.++|.+.+.+..+..
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            332 123455677777666667889999999999988775  578888888889999999999999998887653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.69  E-value=0.18  Score=51.19  Aligned_cols=138  Identities=11%  Similarity=-0.015  Sum_probs=99.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------ChHHHHHHHH
Q 010459          133 EKSRINEFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPS-LEIYNSIIHGYSKIG--------KFNEALLFLN  198 (510)
Q Consensus       133 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g--------~~~~a~~~~~  198 (510)
                      .+.+.|...|...+.+....     ++...|.++|++..+.  .|+ ...|..+..++....        +...+.+..+
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            45567888999888876543     3377999999999987  555 345555444443321        2234444444


Q ss_pred             HHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          199 EMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       199 ~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      +.... ....+...|.++.-.+...|++++|...|++..+..  |+...|..+-..+...|+.++|.+.+++.....
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            43332 133456788888777777899999999999999874  688899999999999999999999999887654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.24  Score=44.03  Aligned_cols=241  Identities=8%  Similarity=-0.011  Sum_probs=149.9

Q ss_pred             hhhHHHHHhhhhhHHHHHHHHHcccCC--CchhhhhccC--CC----ChhhHH-HHHHH--HHhcCCCCcHHHHHHHHHh
Q 010459           63 HTTLLVESYHEHQALNALIQRLNKKVS--CPLQILQHDG--DW----TKDHFW-AVIRF--LKNSSRSRQIPQVFDMWKN  131 (510)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~--~~----~~~~~~-~ll~~--~~~~g~~~~a~~~~~~~~~  131 (510)
                      -|+.-+..+.+.+...++...++.-+.  .|+-..+.-+  -|    +.+.|. .+|.+  ....|.+.+.+.-+..+..
T Consensus        71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~  150 (366)
T KOG2796|consen   71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT  150 (366)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            377777778888777777776663332  2221111110  01    111121 22222  2335665555543333321


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 010459          132 IEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDT  211 (510)
Q Consensus       132 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  211 (510)
                               .-.-.+.-+-.....+..++.|++-.       ..+.+.++....-.|.+.-.+.++.+..+...+-++..
T Consensus       151 ---------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L  214 (366)
T KOG2796|consen  151 ---------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL  214 (366)
T ss_pred             ---------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence                     11123333333333466777776544       45667888888888888889999999988877778888


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459          212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI-----QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL  286 (510)
Q Consensus       212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  286 (510)
                      ...|.++-...|+.+.|...|+...+..-..|..+.+.++     ..|.-.+++..|...|.+....+.. |....|.-.
T Consensus       215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKA  293 (366)
T KOG2796|consen  215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKA  293 (366)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHH
Confidence            8999999999999999999999877543344555555443     4466678899999999888876433 444444433


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010459          287 DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE  322 (510)
Q Consensus       287 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  322 (510)
                      -+..-.|+...|.+....|++..  |...+-++++-
T Consensus       294 LcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~~  327 (366)
T KOG2796|consen  294 LCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVLF  327 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC--CccchhhhHHH
Confidence            33444688999999999998763  55555554433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.67  E-value=0.6  Score=44.13  Aligned_cols=111  Identities=11%  Similarity=-0.020  Sum_probs=85.2

Q ss_pred             HHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhh
Q 010459          350 VWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARR  429 (510)
Q Consensus       350 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~  429 (510)
                      +.+..|.-+...|+...|.++..+..   + ||..-|...|.+++..++|++-.++... +     -.+.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence            44555666677787777777765542   2 6999999999999999999988876543 1     23478899999999


Q ss_pred             hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459          430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE  480 (510)
Q Consensus       430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  480 (510)
                      +.|...+|..++.++          .+.--+..|.++|++.+|.+.--+..
T Consensus       249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            999999999999875          23556788999999999977655444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.64  E-value=0.0076  Score=42.29  Aligned_cols=52  Identities=21%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +.|++++|.++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455666666666655443 224555555666666666666666666655544

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.62  E-value=0.52  Score=42.75  Aligned_cols=174  Identities=9%  Similarity=0.074  Sum_probs=103.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY---NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      ....+.+.|++++|.+.|+++...-..+ ...-   -.+..+|-+.+++++|...|++..+.-..-...-|...+.+.+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            3444567899999999999998763222 2222   34567778899999999999998776443333344444444331


Q ss_pred             --cC---------------CH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHH
Q 010459          222 --YK---------------MY---DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST  281 (510)
Q Consensus       222 --~g---------------~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  281 (510)
                        .+               +.   .+|...|+               .+|.-|=...-..+|...+..+...    =...
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~---------------~li~~yP~S~ya~~A~~rl~~l~~~----la~~  177 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFS---------------KLVRGYPNSQYTTDATKRLVFLKDR----LAKY  177 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHH---------------HHHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence              00               11   12223333               3344444444455555544444322    0111


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcchhHHHHHHH
Q 010459          282 MVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLKEDLVRKLAEVYIKNYMFSRLDDLGD  338 (510)
Q Consensus       282 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  338 (510)
                      -..+.+-|.+.|.+..|..-++.+++.  +.+........++.+|.+.|..+++.....
T Consensus       178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            124567788888888888888888864  333445566677788888888777766643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.59  E-value=0.13  Score=40.71  Aligned_cols=103  Identities=19%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 010459          147 GMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ----SDTYDGLIQAYG  220 (510)
Q Consensus       147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~  220 (510)
                      .++-..|+.++|+.+|++....|....  ...+-.+-+.+...|++++|+.+|++.....  |+    ......+..++.
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence            344556677777777777666665433  2344455566666777777777777665532  22    111122223455


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  255 (510)
                      ..|+.++|.+.+-...    -++...|.--|..|+
T Consensus        87 ~~gr~~eAl~~~l~~l----a~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL----AETLPRYRRAIRFYA  117 (120)
T ss_pred             HCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            6677777776665544    233335555555444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.58  E-value=0.044  Score=45.06  Aligned_cols=91  Identities=10%  Similarity=-0.097  Sum_probs=69.1

Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh
Q 010459          320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF  399 (510)
Q Consensus       320 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  399 (510)
                      +-..+...|++++|.++++-+....+.+..-|..+...+-..|++++|++.|.......+. |...+-.+-.++...|+.
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCH
Confidence            3344455677777777777777777777777888888888888888888888888777654 667777777888888888


Q ss_pred             hHHHHHHHhhhh
Q 010459          400 KHLRVLLSELPT  411 (510)
Q Consensus       400 ~~A~~~~~~m~~  411 (510)
                      +.|.+-|+..+.
T Consensus       120 ~~A~~aF~~Ai~  131 (157)
T PRK15363        120 CYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHH
Confidence            888888887764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.55  E-value=0.33  Score=42.73  Aligned_cols=185  Identities=11%  Similarity=0.112  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      .+-.....+.+.|++.+|.+.|+.+.......| -....-.+..++-+.|+++.|...|++..+.-..-....+...+.+
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            334445556677888888888888875322222 2234445677788888888888888887765221112233333333


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLS---PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      .+........+     ....+..   --..++..+|.-|=......+|...+..+...    =...--.+..-|.+.|.+
T Consensus        87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y  157 (203)
T PF13525_consen   87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKY  157 (203)
T ss_dssp             HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-H
T ss_pred             HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccH
Confidence            32211111110     0000000   00124455566666666666666655555421    011112345667777777


Q ss_pred             HHHHHHHHHHHHCC--CccCHHHHHHHHHHHHhcCChhHH
Q 010459          261 KRMEGTYKSMLTKR--MHLRSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       261 ~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      ..|..-++.+.+.=  .+-.......++.+|.+.|..+.+
T Consensus       158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            77777777777641  111123456667777777766643

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.48  E-value=0.015  Score=40.28  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459          147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE  202 (510)
Q Consensus       147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (510)
                      ..+.+.|++++|...|++..+.. +-+...|..+...+.+.|++++|...|++..+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44556666666666666666654 22555666666666666666666666666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.46  E-value=0.48  Score=44.19  Aligned_cols=123  Identities=8%  Similarity=-0.094  Sum_probs=61.3

Q ss_pred             hhhh-cccccHHHHHHHHHH----CCCCc--CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCC-----CCHH-HHHHH
Q 010459          358 HACL-LSHRGIDSVVREMES----AKVRW--NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVK-----PDIV-TIGIL  424 (510)
Q Consensus       358 ~~~~-~~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~l  424 (510)
                      |-.. |++++|.+.|++..+    .| .+  -...+..+...+.+.|++++|.++|++....-..     ++.. .|...
T Consensus       124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a  202 (282)
T PF14938_consen  124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA  202 (282)
T ss_dssp             HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence            3344 455556555554432    22 11  1234556666788888888888888887653322     1111 12222


Q ss_pred             HHhhhhcCccchHHHHHHHcCCccccc----cccChhHHHHHhhc--cCchhHHHHHHhhcCC
Q 010459          425 YDARRIGFDGTGALEMWKRIGFLFKTV----EINTDPLVLAVYGK--GHFLRYCEEVYSSLEP  481 (510)
Q Consensus       425 i~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~  481 (510)
                      +-++...|+...|.+.+++.....+..    .......|+.+|-.  ...+.+|..-|+.+..
T Consensus       203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence            224555678888888888764332211    12223334555543  2445556666666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.33  E-value=0.31  Score=48.77  Aligned_cols=81  Identities=7%  Similarity=-0.061  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010459          243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE  322 (510)
Q Consensus       243 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  322 (510)
                      +..+...+-.-+.+...+..|-++|..|-..         .++++.....+++++|..+-+...+.  .||  +|-....
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq  812 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ  812 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence            3444444444455556677777888777532         34666777778888887777655432  222  2333334


Q ss_pred             HHHhhcchhHHHHH
Q 010459          323 VYIKNYMFSRLDDL  336 (510)
Q Consensus       323 ~~~~~~~~~~a~~~  336 (510)
                      -++...++++|.+.
T Consensus       813 wLAE~DrFeEAqkA  826 (1081)
T KOG1538|consen  813 WLAENDRFEEAQKA  826 (1081)
T ss_pred             HhhhhhhHHHHHHH
Confidence            44455555555544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.33  E-value=0.026  Score=46.75  Aligned_cols=69  Identities=25%  Similarity=0.381  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHH
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK-----EMNLSPQSDT  211 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t  211 (510)
                      ...++..+...|++++|.++...+.... +.|...|..+|.+|...|+..+|++.|+++.     +.|+.|+..|
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445555556666666666666666543 2355566666666666666666666666553     2366665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.33  E-value=0.043  Score=49.07  Aligned_cols=53  Identities=13%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459          134 KSRINEFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK  186 (510)
Q Consensus       134 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  186 (510)
                      +-..|-.+|-+.+..+...     +.++-.-..+..|.+.|++.|..+|+.||..+-+
T Consensus        62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK  119 (406)
T KOG3941|consen   62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK  119 (406)
T ss_pred             cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence            3445555665555555433     4455555566778888888888888888776543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.21  E-value=0.043  Score=49.08  Aligned_cols=100  Identities=20%  Similarity=0.271  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------------CHHHHH
Q 010459          171 KPSLEIYNSIIHGYSKI-----GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK----------------MYDEID  229 (510)
Q Consensus       171 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~a~  229 (510)
                      ++|..+|-+++..+...     +.++-....++.|.+.|+.-|..+|+.||+.+-|-.                +-+-+.
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            56788888888777643     567777788899999999999999999998876542                223356


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 010459          230 MCLKMMKLDGCSPDHITYNLLIQEFACAGLL-KRMEGTYKSM  270 (510)
Q Consensus       230 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m  270 (510)
                      +++++|...|+.||-.+-..++.++.+.+.. .+..++.-.|
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence            6666666666666666666666666666543 2333444444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.21  E-value=1.3  Score=42.77  Aligned_cols=146  Identities=8%  Similarity=-0.003  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHH
Q 010459          279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLS  357 (510)
Q Consensus       279 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  357 (510)
                      ...|...+++-.+..-++.|+.+|....+.| ..+++.++++++..++.. +..-|.+++.-=....+.++.--+-.+.-
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~-d~~ta~~ifelGl~~f~d~~~y~~kyl~f  475 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG-DRATAYNIFELGLLKFPDSTLYKEKYLLF  475 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC-CcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3456667777778888999999999999988 678889999999988764 45566666655445555555555666666


Q ss_pred             hhhhcccccHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459          358 HACLLSHRGIDSVVREMESAKVRWN--VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR  428 (510)
Q Consensus       358 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~  428 (510)
                      +...++-+.|..+|+...++ +.-+  ...|..+|.-=..-|+...+..+=+.|.+  +.|-..+...+.+-|
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry  545 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY  545 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence            77788888999999854433 1112  46788899888888999999888888876  346555555555443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.18  E-value=0.096  Score=41.83  Aligned_cols=83  Identities=18%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          243 DHITYNLLIQEFACAGLLKRMEGTYKSMLT---------------KRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       243 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      |..++.++|-++++.|+.+....+.+..-.               ....|+..+..+++.+|+..|++..|.++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            567888999999999999999888876521               12457788888888888888888888888887764


Q ss_pred             -cCCCCCHHHHHHHHHHHH
Q 010459          308 -SRTPLKEDLVRKLAEVYI  325 (510)
Q Consensus       308 -~~~~~~~~~~~~li~~~~  325 (510)
                       .+++.+..++..|+.-..
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHH
Confidence             466666777766665443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.18  E-value=0.026  Score=39.09  Aligned_cols=51  Identities=14%  Similarity=0.072  Sum_probs=20.0

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM  270 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  270 (510)
                      +.+.|++++|.+.|++..+.. +-+...|..+-..+.+.|++++|...|++.
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            333444444444444444332 113333333444444444444444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.27  Score=44.85  Aligned_cols=113  Identities=11%  Similarity=-0.013  Sum_probs=66.7

Q ss_pred             CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc---ccHHHHHHHHHHCCCCcCHHHHH
Q 010459          311 PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH---RGIDSVVREMESAKVRWNVTTAN  387 (510)
Q Consensus       311 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~  387 (510)
                      +-|...|-.|-..|...|+++.|...+.......++++..+..+..++....+.   .++.++|+++...+.. |+.+..
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence            345555666666666666666666666666666666665555554444333322   4566777777766444 555555


Q ss_pred             HHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 010459          388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD  426 (510)
Q Consensus       388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~  426 (510)
                      .|-..+...|++.+|...|+.|.+.  -|....+..+|.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie  268 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence            5556777777777777777777764  344444445444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.04  E-value=0.082  Score=47.90  Aligned_cols=100  Identities=13%  Similarity=0.053  Sum_probs=62.4

Q ss_pred             HhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHH
Q 010459          325 IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRV  404 (510)
Q Consensus       325 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  404 (510)
                      .+.+++.+|...+.......+.+.+-|+.-..+|.+.|..+.|.+-.+.....+.. -..+|..|-.+|.-.|++++|.+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHHH
Confidence            34455555555555555556666666666666666666666666666665554322 34566666677777777777777


Q ss_pred             HHHhhhhCCCCCCHHHHHHHHHh
Q 010459          405 LLSELPTRHVKPDIVTIGILYDA  427 (510)
Q Consensus       405 ~~~~m~~~g~~p~~~t~~~li~~  427 (510)
                      .|++.++  +.|+-.+|..=+..
T Consensus       171 aykKaLe--ldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  171 AYKKALE--LDPDNESYKSNLKI  191 (304)
T ss_pred             HHHhhhc--cCCCcHHHHHHHHH
Confidence            7776665  56776666655553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.92  E-value=0.17  Score=46.40  Aligned_cols=94  Identities=11%  Similarity=0.037  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS--PQSDTYDGL  215 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~l  215 (510)
                      |..-+..+.+.|++++|...|+.+.+.  .|+.    ..+-.+...|...|++++|...|+.+.+.-..  .....+-.+
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            444444444455555555555555544  2222    34444555555555555555555555432110  012222333


Q ss_pred             HHHHHccCCHHHHHHHHHHHHh
Q 010459          216 IQAYGKYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       216 i~~~~~~g~~~~a~~~~~~m~~  237 (510)
                      ...+.+.|+.++|.++|+.+.+
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            3344445555555555555543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.84  E-value=0.18  Score=45.77  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=72.2

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      ..+.+++++|+..|.+..+.. +.|.+-|..=..+|.+.|.++.|++=.+.-+..+.. -+.+|..|-.+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence            346788999999998888764 457777777888899999988888877776655321 356888888889999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHH
Q 010459          299 EKFYKRLLNSRTPLKEDLV  317 (510)
Q Consensus       299 ~~~~~~m~~~~~~~~~~~~  317 (510)
                      .+.|+..++  +.|+-.+|
T Consensus       169 ~~aykKaLe--ldP~Ne~~  185 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESY  185 (304)
T ss_pred             HHHHHhhhc--cCCCcHHH
Confidence            888877765  45766655

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.84  E-value=0.66  Score=37.93  Aligned_cols=83  Identities=14%  Similarity=0.183  Sum_probs=34.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM  224 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  224 (510)
                      +|..+.+.+........++.+.+.+. .+....|.+|..|++.. .++.++.++.      .++......+++.|.+.+.
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence            33444444444444444444444432 34444444444444332 2222233221      1122223334444555555


Q ss_pred             HHHHHHHHHHH
Q 010459          225 YDEIDMCLKMM  235 (510)
Q Consensus       225 ~~~a~~~~~~m  235 (510)
                      ++++..++.++
T Consensus        85 ~~~~~~l~~k~   95 (140)
T smart00299       85 YEEAVELYKKD   95 (140)
T ss_pred             HHHHHHHHHhh
Confidence            55555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.80  E-value=0.055  Score=37.97  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMK  201 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~  201 (510)
                      .+|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.+|.+.| ++++|++.|++..
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            344444455555555555555555554442 113444555555555555 4555555554443

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=2.9  Score=43.04  Aligned_cols=323  Identities=11%  Similarity=0.020  Sum_probs=169.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGKF--NEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      ..+|+-+...+.+..|+++-..+.    .|.   ...|.....-+.+..+.  +++++-.++=..... .+..+|..+..
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~----~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~  515 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLN----LPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIAR  515 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhC----CccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHH
Confidence            446667777777888888777665    333   44555555555555322  233333332222222 34556777777


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC
Q 010459          218 AYGKYKMYDEIDMCLKMMKLDGCS----PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG  293 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  293 (510)
                      -...+|+.+.|..+++.=+..+..    .+..-+..-+.-+.+.|+.+....++-.|...-   +...|...+      .
T Consensus       516 ~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~  586 (829)
T KOG2280|consen  516 RAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------R  586 (829)
T ss_pred             HHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------H
Confidence            777778888887777654332211    122234445555666777776666665554321   111111111      1


Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH-HH---HHhhcCCchHHHHHHHHHhhhhc-------
Q 010459          294 MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG-DD---LASRIGRTELVWCLRLLSHACLL-------  362 (510)
Q Consensus       294 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~---~~~~~~~~~~~~~~li~~~~~~~-------  362 (510)
                      +...|..+|.+..+..-.      ..|-+.|-...+...+..+. +.   .....++. ......-..+++..       
T Consensus       587 ~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~-~~lk~~a~~~a~sk~~s~e~k  659 (829)
T KOG2280|consen  587 NQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRI-PALKTAANAFAKSKEKSFEAK  659 (829)
T ss_pred             hchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccc-hhHHHHHHHHhhhhhhhhHHH
Confidence            122333333333321100      00111111111111111110 00   00000000 00000111111111       


Q ss_pred             ---ccccHHHHHHHHHH-CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHH
Q 010459          363 ---SHRGIDSVVREMES-AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL  438 (510)
Q Consensus       363 ---~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~  438 (510)
                         +..+-+.+++.+.. .|..-...+.+--+..+...|+..+|.++-.+.+    -||...|..=+.++...+++++-.
T Consensus       660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe  735 (829)
T KOG2280|consen  660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE  735 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence               11122333333332 2323344566667778889999999999988876    388888988889999999999988


Q ss_pred             HHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCC
Q 010459          439 EMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKN  505 (510)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  505 (510)
                      ++-++..      .+.-|.-.+..|.+.|+.++|.+.+-+....  .       -.+.+|.+.|+..
T Consensus       736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--~-------ekv~ay~~~~~~~  787 (829)
T KOG2280|consen  736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--Q-------EKVKAYLRVGDVK  787 (829)
T ss_pred             HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh--H-------HHHHHHHHhccHH
Confidence            8877662      2344666789999999999999999887642  1       3566666666554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.74  E-value=0.054  Score=37.97  Aligned_cols=25  Identities=16%  Similarity=0.384  Sum_probs=9.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 010459          177 YNSIIHGYSKIGKFNEALLFLNEMK  201 (510)
Q Consensus       177 ~~~li~~~~~~g~~~~a~~~~~~m~  201 (510)
                      |..+-..+.+.|++++|+..|++..
T Consensus         6 ~~~~g~~~~~~~~~~~A~~~~~~ai   30 (69)
T PF13414_consen    6 WYNLGQIYFQQGDYEEAIEYFEKAI   30 (69)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3333333333333333333333333

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.61  E-value=3.1  Score=42.47  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH---
Q 010459          172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN---  248 (510)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---  248 (510)
                      -|....-.|.+.+...|.-++|.+.|-+-   +. |     .+-+..|...++|.+|.++-+...    -|.+.+.-   
T Consensus       850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~  916 (1189)
T KOG2041|consen  850 EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQ  916 (1189)
T ss_pred             cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHH
Confidence            35566677778888888888887776443   21 2     235566777777877777766544    23332221   


Q ss_pred             -----------HHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          249 -----------LLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       249 -----------~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                                 --|..+.+.|+.-+|.+++.+|.+
T Consensus       917 aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  917 AAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence                       124456666777677777777753

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.59  E-value=0.33  Score=44.45  Aligned_cols=96  Identities=14%  Similarity=0.084  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--ccCHHHHHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH----ITYNLLIQEFACAGLLKRMEGTYKSMLTKRM--HLRSSTMVA  284 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~  284 (510)
                      .|...+..+.+.|++++|...|+.+.+.-  |+.    ..+-.+-..|...|++++|...|+.+...-.  +.....+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34444433344455555555555554431  221    2333444555555555555555555553211  001223333


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhc
Q 010459          285 ILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       285 ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      +...+...|+.++|..+++.+++.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344444555555555555555543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.24  Score=45.14  Aligned_cols=115  Identities=14%  Similarity=0.019  Sum_probs=74.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHH
Q 010459          135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG---KFNEALLFLNEMKEMNLSPQSDT  211 (510)
Q Consensus       135 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t  211 (510)
                      .+-|...|-.|-..|...|+++.|..-|....+.. .+|...+..+-.++....   ...++..+|+++...+.. |..+
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira  229 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA  229 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence            34566777777778888888888887777776653 345555555555544332   346777778777765432 5555


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|-..+...|++.+|...++.|.+..  |....|..+|..
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~  269 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence            6666667777788888888888877653  334445555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.49  E-value=0.13  Score=36.49  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM  203 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  203 (510)
                      .|.+.+++++|.++++.+.+.+. .+...|...-..+.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45555666666666666655532 24455555555566666666666666665543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.46  E-value=1.3  Score=41.36  Aligned_cols=129  Identities=12%  Similarity=0.210  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCH
Q 010459          155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK--IG----KFNEALLFLNEMKEMNL---SPQSDTYDGLIQAYGKYKMY  225 (510)
Q Consensus       155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~  225 (510)
                      +++...+++.|.+.|+..+..+|-+.......  ..    ...+|.++|+.|++.-.   .++-.++..|+..  ..+++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45677888899999998888777663333322  22    35678999999987642   4667777777665  44443


Q ss_pred             ----HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCccCHHHHHHH
Q 010459          226 ----DEIDMCLKMMKLDGCSPDHI-TYNLLIQEFACAGL---LKRMEGTYKSMLTKRMHLRSSTMVAI  285 (510)
Q Consensus       226 ----~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~l  285 (510)
                          +.++.+|+.+.+.|+.++.. -+.+-|-++.....   ...+.++++.+.+.|+++....|..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence                45788888888888775433 33333333333222   44778889999999988877766544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.40  E-value=0.41  Score=45.96  Aligned_cols=148  Identities=12%  Similarity=0.078  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY-DGL  215 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~l  215 (510)
                      =.++|..+|+.-.+..-++.|+.+|-+..+.| +.+++..++++|.-++ .|+..-|..+|+-=...  -||...| +-.
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky  472 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY  472 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence            45778888888888888999999999998888 6778888899988776 46777788888753332  2455554 566


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459          216 IQAYGKYKMYDEIDMCLKMMKLDGCSPD--HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN  291 (510)
Q Consensus       216 i~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  291 (510)
                      +..+.+.++-+.|..+|+...+. +..+  ...|..||+-=..-|+...+..+=+.|...  -|...+.....+-|.-
T Consensus       473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i  547 (660)
T COG5107         473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI  547 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence            77778888889999999854422 0122  457888998888889998888887777754  3444444444444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.35  E-value=1.8  Score=38.06  Aligned_cols=45  Identities=18%  Similarity=0.050  Sum_probs=28.3

Q ss_pred             HHHHHHcCCChhHHHHHHHhhhhCCCCCCH----HHHHHHHHhhhhcCccc
Q 010459          389 ILLAYLKMKDFKHLRVLLSELPTRHVKPDI----VTIGILYDARRIGFDGT  435 (510)
Q Consensus       389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~  435 (510)
                      +..-|.+.|.+..|..-++.+.+.  -|+.    .....++.++.+.|..+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence            455688888999888888888853  2433    33455555666666555

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.30  E-value=0.14  Score=36.35  Aligned_cols=52  Identities=13%  Similarity=-0.003  Sum_probs=21.3

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      |.+.+++++|.++++.+.... +.+...|...-..+.+.|++++|.+.|+...
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            334444444444444444332 2233333334444444444444444444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.26  E-value=3  Score=40.07  Aligned_cols=164  Identities=14%  Similarity=0.092  Sum_probs=101.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEMEGFA---LKPSLEIYNSIIHGYSK---IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      .++-.|-...+++..+++.+.|...-   +..+...--...-++-+   .|+.++|++++..+....-.++..||..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34446888899999999999998641   11122222233344556   8899999999999777777788889988887


Q ss_pred             HHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH---HH-HHHCC---Ccc
Q 010459          218 AYGKY---------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL-L---KRMEGTY---KS-MLTKR---MHL  277 (510)
Q Consensus       218 ~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~---~~A~~~~---~~-m~~~g---~~p  277 (510)
                      .|-..         ...+.|...|.+--+.  .||..+=-.+...+...|. .   .+..++-   .. ..+.|   -..
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            76432         2355677666655433  3444332223333333332 1   1222222   22 12333   234


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          278 RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       278 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      |-..+.+++.++.-.|+.++|.+..+.|.+..
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            55677888899999999999999999988764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.13  E-value=0.74  Score=44.85  Aligned_cols=64  Identities=13%  Similarity=0.054  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEM  203 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  203 (510)
                      +...|+.+-.+|.+.|++++|+..|++..+.  .|+.    .+|..+..+|.+.|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4455666666666667777777766666554  3442    34666666677777777777666666553

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.70  E-value=0.008  Score=49.67  Aligned_cols=128  Identities=9%  Similarity=0.046  Sum_probs=85.5

Q ss_pred             HHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCcc
Q 010459          355 LLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDG  434 (510)
Q Consensus       355 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~  434 (510)
                      |..+...+..+.....++.+...+..-+....+.++..|++.++.++..++++..       +..-...++..|.+.|.+
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~   86 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY   86 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence            3444555666777777888887765667888899999999998888888777622       224445666777778888


Q ss_pred             chHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCC
Q 010459          435 TGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGK  504 (510)
Q Consensus       435 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  504 (510)
                      +++.-++.+++....         .+..+.+.++++.|.+.+.+..      +...|..+++.|...++.
T Consensus        87 ~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~~------~~~l~~~l~~~~l~~~~~  141 (143)
T PF00637_consen   87 EEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKVD------DPELWEQLLKYCLDSKPF  141 (143)
T ss_dssp             HHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGCS------SSHHHHHHHHHHCTSTCT
T ss_pred             HHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhcC------cHHHHHHHHHHHHhcCcc
Confidence            888888887644311         1122445567777765555544      456888999988887765

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.69  E-value=0.89  Score=37.17  Aligned_cols=121  Identities=9%  Similarity=-0.044  Sum_probs=77.4

Q ss_pred             HhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccch
Q 010459          357 SHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTG  436 (510)
Q Consensus       357 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~  436 (510)
                      .+...+........++.+...+. .+...++.++..|++.+ .++.+..++.      .++......+++.|.+.+-+++
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~   87 (140)
T smart00299       16 LFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEE   87 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHH
Confidence            33334445566666777776663 47778888888888764 3344444442      1344555567777888888888


Q ss_pred             HHHHHHHcCCccccccccChhHHHHHhhcc-CchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHh
Q 010459          437 ALEMWKRIGFLFKTVEINTDPLVLAVYGKG-HFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIK  500 (510)
Q Consensus       437 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  500 (510)
                      +.-++.+++.         +...++.+... ++.+.|.+.+++-.      +...|..++..+..
T Consensus        88 ~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~  137 (140)
T smart00299       88 AVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD  137 (140)
T ss_pred             HHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence            8888887633         33345555555 78888888887633      34477788777654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.62  E-value=0.96  Score=44.09  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=57.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      +.+...|+.+..+|.+.|++++|+..|++.++.  .|+.    .+|..+..+|.+.|+.++|...+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            446788999999999999999999999998885  4553    46899999999999999999999998864

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.42  E-value=0.11  Score=37.52  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=9.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHH
Q 010459          212 YDGLIQAYGKYKMYDEIDMCLKM  234 (510)
Q Consensus       212 ~~~li~~~~~~g~~~~a~~~~~~  234 (510)
                      ++.+-..|.+.|++++|.+.+++
T Consensus        49 ~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen   49 LNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            33333444444444444444433

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.33  E-value=0.22  Score=35.80  Aligned_cols=62  Identities=19%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-ccC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          245 ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RM-HLR-SSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      .+++.+-..|...|++++|+..|++..+.    |- .|+ ..++..+-..+...|++++|++.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555556666666666666666555421    11 111 3455555566666666666666665543

...

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.23  E-value=1.8  Score=40.48  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=32.0

Q ss_pred             cHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcC-CC--hhHHHHHHHhhhhCCCCCCHHHHHHHH
Q 010459          366 GIDSVVREMESAKVRWN-VTTANIILLAYLKM-KD--FKHLRVLLSELPTRHVKPDIVTIGILY  425 (510)
Q Consensus       366 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~t~~~li  425 (510)
                      .+...|+.+.+.|+..+ ..-+.+-+-++... ..  +..+.++++.+.+.|+++...+|..+-
T Consensus       161 ~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  161 RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence            34556666666665442 22222222222221 11  346777777777777777777765443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.22  E-value=3  Score=35.32  Aligned_cols=127  Identities=11%  Similarity=0.001  Sum_probs=68.8

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CccCHHHH
Q 010459          206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR---MHLRSSTM  282 (510)
Q Consensus       206 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~  282 (510)
                      -|+..---.|-.+..+.|+..+|...|++....-+--|....-.+..+....+++..|..+++.+.+..   -.||  +.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence            455555555666666666666666666666544334455555555555566666666666666655432   2233  33


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459          283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      ..+.+.+...|...+|+.-|+.....-  |+...-.-.-.++.+.|+.+++..-
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence            344556666666666666666665542  3333333334444555555444433

>PRK15331 chaperone protein SicA; Provisional

Probab=94.06  E-value=0.57  Score=38.91  Aligned_cols=87  Identities=7%  Similarity=-0.025  Sum_probs=63.8

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      +...|++++|..+|.-+.-.+ .-|..-|..|-.++-..+++++|+..|......+.. |...+-..-.++...|+.+.|
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence            345788999999998887655 245666777777788888899999988776654432 333444566778888999999


Q ss_pred             HHHHHHHHh
Q 010459          299 EKFYKRLLN  307 (510)
Q Consensus       299 ~~~~~~m~~  307 (510)
                      +.-|....+
T Consensus       125 ~~~f~~a~~  133 (165)
T PRK15331        125 RQCFELVNE  133 (165)
T ss_pred             HHHHHHHHh
Confidence            998888776

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.04  E-value=0.73  Score=45.70  Aligned_cols=130  Identities=15%  Similarity=0.134  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      ..+.+++.+-+.|.++.|+++-..-.             .-.+...++|+++.|.++-++.      .+...|..|-+..
T Consensus       297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A  357 (443)
T PF04053_consen  297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA  357 (443)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence            45566666666666666666543221             1234455666666666554332      3556666666666


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  264 (510)
                      .+.|+++-|.+.|.+..         -|..|+-.|.-.|+.+.-.++.+.....|-      +|....++.-.|+.++..
T Consensus       358 L~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv  422 (443)
T PF04053_consen  358 LRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV  422 (443)
T ss_dssp             HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred             HHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence            66666666666666542         235555566666666666666655554441      344444555556666655


Q ss_pred             HHHH
Q 010459          265 GTYK  268 (510)
Q Consensus       265 ~~~~  268 (510)
                      +++.
T Consensus       423 ~lL~  426 (443)
T PF04053_consen  423 DLLI  426 (443)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.94  E-value=3.3  Score=41.69  Aligned_cols=177  Identities=16%  Similarity=0.089  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhc----CChH
Q 010459          122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS------LEIYNSIIHGYSKI----GKFN  191 (510)
Q Consensus       122 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~----g~~~  191 (510)
                      +.-+|..+..  -++|   ....++...+=.||-+.+++.+.+-.+.+--..      ...|+.++..++..    .+.+
T Consensus       176 G~G~f~L~lS--lLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~  250 (468)
T PF10300_consen  176 GFGLFNLVLS--LLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE  250 (468)
T ss_pred             HHHHHHHHHH--hCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence            3445666652  2333   344567777777888888888877665331112      23466666665543    4678


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459          192 EALLFLNEMKEMNLSPQSDTYDGL-IQAYGKYKMYDEIDMCLKMMKLDG--C-SPDHITYNLLIQEFACAGLLKRMEGTY  267 (510)
Q Consensus       192 ~a~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~A~~~~  267 (510)
                      .|.++++.+.+.  -|+..-|... -+.+...|++++|.+.|+......  . +.....+--+.-.+.-..+|++|.+.|
T Consensus       251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            999999999875  4676666433 345566899999999999755311  1 122333444556688889999999999


Q ss_pred             HHHHHCCCccCHHHHHHHHHHHH--hcCCh-------hHHHHHHHHHHh
Q 010459          268 KSMLTKRMHLRSSTMVAILDAYM--NFGML-------DKMEKFYKRLLN  307 (510)
Q Consensus       268 ~~m~~~g~~p~~~t~~~ll~~~~--~~g~~-------~~a~~~~~~m~~  307 (510)
                      ..+.+..-  -+.++-..+.++|  ..|+.       ++|.++|.++..
T Consensus       329 ~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  329 LRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            99987532  2333333333333  45666       888999988753

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.6  Score=42.72  Aligned_cols=65  Identities=8%  Similarity=-0.015  Sum_probs=29.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHcc---cCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010459           66 LLVESYHEHQALNALIQRLNK---KVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWK  130 (510)
Q Consensus        66 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  130 (510)
                      .+.++|+....|+.--.....   .|.-...-+..|...+..+....+..-.+..+++.+...+-.++
T Consensus        24 ~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlR   91 (418)
T KOG4570|consen   24 LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLR   91 (418)
T ss_pred             hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHh
Confidence            455566655555443332221   11112344444444444444455544444555555555444443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.72  E-value=7.5  Score=42.46  Aligned_cols=117  Identities=15%  Similarity=0.034  Sum_probs=60.2

Q ss_pred             ccCHHHHHHHH----HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHH
Q 010459          276 HLRSSTMVAIL----DAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVW  351 (510)
Q Consensus       276 ~p~~~t~~~ll----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  351 (510)
                      .|+...+.-+.    .-+...+.+++|--.|+..-+         ...-+.+|..+|+|.++..+..++......-...-
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence            34444444333    333445566666555544311         12345667777777777777655543322223233


Q ss_pred             HHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459          352 CLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL  409 (510)
Q Consensus       352 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  409 (510)
                      ..|+..+...++.-+|-++..+-...   |     .-.+..|++...|++|.++-..-
T Consensus      1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence            55666666666666666666665443   1     12233345555666666554443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.54  E-value=6.3  Score=36.63  Aligned_cols=163  Identities=13%  Similarity=0.077  Sum_probs=99.0

Q ss_pred             HhcCCCCcHHHHHHHHHhhc-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCH----
Q 010459          114 KNSSRSRQIPQVFDMWKNIE-KSRINE------FNSQKIIGMLCEEGLMEEAVRAFQEMEGF--------ALKPSL----  174 (510)
Q Consensus       114 ~~~g~~~~a~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~----  174 (510)
                      .+.|+.+.|...+.+..... ...|+.      ..||.-.+.+.+..+++.|...+++..+.        ...|+.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46788888888888877643 334443      24555555555554777766555543322        123332    


Q ss_pred             -HHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          175 -EIYNSIIHGYSKIGKF---NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL  250 (510)
Q Consensus       175 -~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  250 (510)
                       .+...++.+|...+..   ++|.++++.+...... ...++-.-+..+.+.++.+++.+++.+|...- .-....+..+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~  161 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI  161 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence             4567788888887764   4566677777554322 24455556667777888899999999988652 1134455555


Q ss_pred             HHHH---HHcCCHHHHHHHHHHHHHCCCccCH
Q 010459          251 IQEF---ACAGLLKRMEGTYKSMLTKRMHLRS  279 (510)
Q Consensus       251 i~~~---~~~g~~~~A~~~~~~m~~~g~~p~~  279 (510)
                      +..+   ... ....|...++.+....+.|..
T Consensus       162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence            5554   333 345677777777665555544

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=93.48  E-value=0.81  Score=38.02  Aligned_cols=85  Identities=9%  Similarity=0.008  Sum_probs=44.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM  230 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  230 (510)
                      ..|++++|..+|.-+...++. |..-|..|-..+-..+++++|+..|...-..+.. |...+-..-.+|...|+.+.|..
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence            456666666666655544322 4444555555555566666666666554333321 33333344455555666666666


Q ss_pred             HHHHHHh
Q 010459          231 CLKMMKL  237 (510)
Q Consensus       231 ~~~~m~~  237 (510)
                      .|+....
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            6665554

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.42  E-value=4.2  Score=34.19  Aligned_cols=135  Identities=13%  Similarity=0.127  Sum_probs=80.1

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459          160 RAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG  239 (510)
Q Consensus       160 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  239 (510)
                      +....+.+.++.|+...|..+|+.+.+.|++.    .+..+...++-||.......+-.+...  ...+.++=-.|.++ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHH-
Confidence            34455666777888888888888888888754    344555666777776666555444332  23333333333211 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          240 CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       240 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                         =...+..+++.+...|++-+|+++.+.....    +......++.+..+.+|...-..+++...++
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               0113566777788888888888887665322    2223345666766777766666666665543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.35  E-value=1.1  Score=40.99  Aligned_cols=78  Identities=12%  Similarity=0.052  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCccCHHHHHH
Q 010459          210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KRMHLRSSTMVA  284 (510)
Q Consensus       210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~  284 (510)
                      .++..++..+..+|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            466778888888999999999999988775 56888999999999999999999999888764     577777766655


Q ss_pred             HHHH
Q 010459          285 ILDA  288 (510)
Q Consensus       285 ll~~  288 (510)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.34  E-value=3.4  Score=32.89  Aligned_cols=56  Identities=18%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC
Q 010459          358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV  414 (510)
Q Consensus       358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  414 (510)
                      ....|..+...++...+.+. -.|++...-.+..||.+.|...++-+++++.-+.|+
T Consensus        96 lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   96 LVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            34444445555555555432 234555566666777777777777777777766664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.01  E-value=1.5  Score=40.21  Aligned_cols=78  Identities=14%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGCSPDHITYNL  249 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~  249 (510)
                      .++..++..+...|+.+.+.+.++++.....- |...|..+|.+|.+.|+...|...|+++.+     .|+.|-..++..
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34444444445555555555555555443321 444555555555555555555555544432     345555555444


Q ss_pred             HHHH
Q 010459          250 LIQE  253 (510)
Q Consensus       250 li~~  253 (510)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.99  E-value=7.3  Score=35.77  Aligned_cols=142  Identities=14%  Similarity=0.101  Sum_probs=78.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE  227 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  227 (510)
                      .....|++.+|...|.......-+ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            345567777777777777655322 3455556677777777777777777776443222222222233344444444444


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCccCHHHHHHHHHHHHhcC
Q 010459          228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK--RMHLRSSTMVAILDAYMNFG  293 (510)
Q Consensus       228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g  293 (510)
                      ...+-.+.-..  +-|...--.+-..+...|+.++|++.+-.+.++  |.. |...-..++..+.-.|
T Consensus       222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g  286 (304)
T COG3118         222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence            44444444331  225555556667777777777777766655543  232 4444455555555544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=92.98  E-value=12  Score=38.42  Aligned_cols=54  Identities=11%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459          242 PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR  304 (510)
Q Consensus       242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  304 (510)
                      -|....-.|..++.+.|.-++|.+.|-+--   . |     -..+.+|...+++.+|.++-++
T Consensus       850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  850 EDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             cccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence            344455566677777777777776653321   1 1     1345566666777666666543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.96  E-value=4.3  Score=40.36  Aligned_cols=156  Identities=12%  Similarity=0.127  Sum_probs=95.7

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE  192 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  192 (510)
                      ..-.++++++.+..+.-.-.+.+  +....+.++..+-+.|..+.|+++-.         |..   .-.....+.|+++.
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~  336 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI  336 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence            33456666655554311100111  24557888888888888888887743         322   23445567888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                      |.++-++.      ++...|..|-+...+.|+++.|++.|.+..         -|..|+--|.-.|+.+.-.++-+....
T Consensus       337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            88765443      367788888888888888888888888776         256677778888888777777777666


Q ss_pred             CCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459          273 KRMHLRSSTMVAILDAYMNFGMLDKMEKFYK  303 (510)
Q Consensus       273 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  303 (510)
                      .|      -++....++.-.|+.++..+++.
T Consensus       402 ~~------~~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  402 RG------DINIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             cc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence            65      24555566666788877777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.73  E-value=9.5  Score=36.43  Aligned_cols=296  Identities=8%  Similarity=-0.068  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459          141 NSQKIIGMLCE--EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY--SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI  216 (510)
Q Consensus       141 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  216 (510)
                      -|.+|-.++..  .||-..|.++-.+-.+. +.-|....-.|+.+-  .-.|+.+.|.+-|+.|..     |..|-..=+
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL  157 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL  157 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence            35555555544  36666666665543321 123444444444433  346777777777777765     333332222


Q ss_pred             H----HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CccCHH--HHHHHHHHH
Q 010459          217 Q----AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MHLRSS--TMVAILDAY  289 (510)
Q Consensus       217 ~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~  289 (510)
                      +    ..-+.|+.+.|.+.-+..-..- +.=...+.+.+...+..|+|+.|+++++.-++.. +.++..  .-..|+.+-
T Consensus       158 RgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk  236 (531)
T COG3898         158 RGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK  236 (531)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence            2    2235667777776666655432 2234566777777777777777777777655432 334432  222233322


Q ss_pred             Hh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccccc
Q 010459          290 MN---FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG  366 (510)
Q Consensus       290 ~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  366 (510)
                      ..   ..+...|+..-.+..+  +.||..-                                 .--.-..++...|+..+
T Consensus       237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvP---------------------------------aav~AAralf~d~~~rK  281 (531)
T COG3898         237 AMSLLDADPASARDDALEANK--LAPDLVP---------------------------------AAVVAARALFRDGNLRK  281 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHhh--cCCccch---------------------------------HHHHHHHHHHhccchhh
Confidence            21   1233333333332222  2222111                                 11111234455556666


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh-CCCCCCH-HHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          367 IDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT-RHVKPDI-VTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       367 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      +-.+++.+-+..+.|+.      -..|.+...-+.++.-+++..+ ..++||. .....+..+....|++..|..--+..
T Consensus       282 g~~ilE~aWK~ePHP~i------a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa  355 (531)
T COG3898         282 GSKILETAWKAEPHPDI------ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA  355 (531)
T ss_pred             hhhHHHHHHhcCCChHH------HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            66777777777666653      1223333333444444444432 2345543 45555556666666666655444433


Q ss_pred             CCccccccccChhHHHHHh-hccCchhHHHHHHhhcCCCCCCC
Q 010459          445 GFLFKTVEINTDPLVLAVY-GKGHFLRYCEEVYSSLEPYSREK  486 (510)
Q Consensus       445 ~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p  486 (510)
                      ..  ..|....|..+-+.- +..|+-.++.+.+-+-.....+|
T Consensus       356 ~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         356 AR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             hh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            11  113333444444432 23477777777666655543344

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.72  E-value=5.3  Score=33.55  Aligned_cols=126  Identities=9%  Similarity=0.098  Sum_probs=84.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHH
Q 010459          133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG--KFNEALLFLNEMKEMNLSPQSD  210 (510)
Q Consensus       133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~  210 (510)
                      .+++|+...+..+|+.+.+.|.+....+    +...++-+|.......+-.+....  -..-|+.++.++..        
T Consensus        23 ~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------   90 (167)
T PF07035_consen   23 HNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------   90 (167)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------
Confidence            7889999999999999999998766544    445555666655554443332221  13344555555431        


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      .+..++..+...|++-+|.++.+...    ..+...-..++.+....+|...-..+|+-..+.+
T Consensus        91 ~~~~iievLL~~g~vl~ALr~ar~~~----~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   91 AYEEIIEVLLSKGQVLEALRYARQYH----KVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHcC----CcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            45677788888999999999988864    2333344667888888888777777776666543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.50  E-value=4.5  Score=32.13  Aligned_cols=91  Identities=20%  Similarity=0.128  Sum_probs=64.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCC
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD---TYDGLIQAYGKYKM  224 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~  224 (510)
                      +.+..|+++.|++.|.+....- +.+...||.-..++--.|+.++|++=+++.++..-.-+..   .|..--..|-..|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            5667888888888888876542 3467788888888888899999888888876642111222   33333445667788


Q ss_pred             HHHHHHHHHHHHhCC
Q 010459          225 YDEIDMCLKMMKLDG  239 (510)
Q Consensus       225 ~~~a~~~~~~m~~~g  239 (510)
                      -+.|..=|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            888888888877666

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.40  E-value=4.4  Score=33.63  Aligned_cols=71  Identities=10%  Similarity=0.055  Sum_probs=39.5

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK  186 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  186 (510)
                      .-.+.++.+++..++..+...+.-.|...++...+  +.+.|++.+|+++|+++...  .|....-..|+..|..
T Consensus        19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER--APGFPYAKALLALCLY   89 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence            33455677777777776654333333444444333  44677777777777777654  2333434444444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=11  Score=36.18  Aligned_cols=226  Identities=13%  Similarity=0.029  Sum_probs=115.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 010459          143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGK  221 (510)
Q Consensus       143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~  221 (510)
                      ...-..+.+..++..|+..+....+.... +..-|..-...+...|++++|+--.+.-++.  +| ...+..-.-+++..
T Consensus        53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a  129 (486)
T KOG0550|consen   53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA  129 (486)
T ss_pred             HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence            33556777788888888888888776432 4555666666777777888777666554432  22 22244555556666


Q ss_pred             cCCHHHHHHHHHHHHh----------------CCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 010459          222 YKMYDEIDMCLKMMKL----------------DGCSPDHITYNLLI-QEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA  284 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~----------------~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  284 (510)
                      .++..+|...++.-..                ..-+|...+|-.+= ..+.-.|++++|..+--...+..   ....+..
T Consensus       130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al  206 (486)
T KOG0550|consen  130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEAL  206 (486)
T ss_pred             hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHH
Confidence            6667777766663210                00012223333221 33445566777666655555432   1123333


Q ss_pred             HHHHHH--hcCChhHHHHHHHHHHhcCCCCCHHHHHHHH-------------HHHHhhcchhHHHHHHHHHHhhcCCc--
Q 010459          285 ILDAYM--NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA-------------EVYIKNYMFSRLDDLGDDLASRIGRT--  347 (510)
Q Consensus       285 ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li-------------~~~~~~~~~~~a~~~~~~~~~~~~~~--  347 (510)
                      .+++.+  -.++.+.+...|.+.++.+  |+...--.+-             ....+.|.+..|.+.+.......+.+  
T Consensus       207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~  284 (486)
T KOG0550|consen  207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK  284 (486)
T ss_pred             HhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence            333332  3456667777776665543  4333222111             11233455555555544444333322  


Q ss_pred             --hHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459          348 --ELVWCLRLLSHACLLSHRGIDSVVREMES  376 (510)
Q Consensus       348 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~  376 (510)
                        ...|........+.|+.++|+.--+....
T Consensus       285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~  315 (486)
T KOG0550|consen  285 TNAKLYGNRALVNIRLGRLREAISDCNEALK  315 (486)
T ss_pred             hhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence              22233334444455555555555554444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.08  E-value=5.9  Score=39.94  Aligned_cols=163  Identities=8%  Similarity=-0.026  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHh----hcchhHHHHHHHHHHhhcCCchHH
Q 010459          281 TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKED------LVRKLAEVYIK----NYMFSRLDDLGDDLASRIGRTELV  350 (510)
Q Consensus       281 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  350 (510)
                      .+..+++...-.||-+.+.+.+.+..+.+-.-.+.      .|...+..++.    ....+.+.+++.......|....-
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf  269 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF  269 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            33445555555566666666665554422111111      11222222221    234455666655555554443333


Q ss_pred             HHHHHHHhhhhcccccHHHHHHHHHHCC---CCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459          351 WCLRLLSHACLLSHRGIDSVVREMESAK---VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA  427 (510)
Q Consensus       351 ~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~  427 (510)
                      .-.-...+...|+.++|.+.|++.....   .+.....+--+.-.+.-..+|++|.+.|..+.+.. .....+|..+..+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            3333445566677777777777654311   11122233334455667788888888888888632 2244555555553


Q ss_pred             -hhhcCcc-------chHHHHHHHc
Q 010459          428 -RRIGFDG-------TGALEMWKRI  444 (510)
Q Consensus       428 -~~~~~~~-------~~a~~~~~~~  444 (510)
                       +...++.       ++|.+++++.
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHH
Confidence             3445555       7777777766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.99  E-value=18  Score=38.08  Aligned_cols=225  Identities=8%  Similarity=0.033  Sum_probs=117.7

Q ss_pred             cceeeeccccccccCcchHHHHHHhhhccccccccCCCccccccchhh------hhHHHHHhhhhhHHHHHHHHHcccCC
Q 010459           16 HCKVRLNKNKKNKLTHDRVFFAKTLIRKPISCCCLSSAPSLDYHSTKH------TTLLVESYHEHQALNALIQRLNKKVS   89 (510)
Q Consensus        16 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~   89 (510)
                      .-+.+--+.+++..+..++.+. .+.++++.|+..  -..+.-+..++      -..-++-..+.....-|+..-...+.
T Consensus       286 ~~~i~~~~d~~n~~v~ys~vl~-~l~d~l~~w~~~--~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~  362 (933)
T KOG2114|consen  286 SNRIFKAYDLRNRYVLYSSVLE-DLSDNLIEWSFD--CLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHL  362 (933)
T ss_pred             hhheeehhhhcCcccchHHhHH-HHHHHHHhcCCc--EEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC
Confidence            3444445577777777776666 588888888710  00000011111      11223333333444444444433333


Q ss_pred             CchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010459           90 CPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA  169 (510)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  169 (510)
                      .++...        ...-..-+.+.+.|++++|.+-|-+-.  .-+.|..     +|.-|.....+..--..++.+.+.|
T Consensus       363 d~d~~~--------~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~g  427 (933)
T KOG2114|consen  363 DEDTLA--------EIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKG  427 (933)
T ss_pred             CHHHHH--------HHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcc
Confidence            222110        111223344566788888887665433  3334432     5556666667777777788888887


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL  249 (510)
Q Consensus       170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  249 (510)
                      +. +...-+.|+.+|.+.++.++-.++.+.-. .|..  .+-....+..+-+.+-.++|..+-....     .+......
T Consensus       428 la-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~i  498 (933)
T KOG2114|consen  428 LA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDI  498 (933)
T ss_pred             cc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHH
Confidence            65 66666788888888888877766665543 3321  1112345555555666666655544443     12222222


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 010459          250 LIQEFACAGLLKRMEGTYKSM  270 (510)
Q Consensus       250 li~~~~~~g~~~~A~~~~~~m  270 (510)
                      +   +-..+++++|++.+..|
T Consensus       499 l---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  499 L---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             H---HHHhcCHHHHHHHHhcC
Confidence            2   23445566666665544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=91.93  E-value=5.4  Score=31.79  Aligned_cols=137  Identities=12%  Similarity=0.194  Sum_probs=78.2

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMC  231 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~  231 (510)
                      .|.+++..++..+....   .+..-||.+|--....-+-+-..++++..-+-   -|.          ..||++......
T Consensus        15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~C   78 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIEC   78 (161)
T ss_dssp             TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHHH
T ss_pred             hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHHH
Confidence            47777777777777652   35556666666555555555555555544221   121          233444443333


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459          232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT  310 (510)
Q Consensus       232 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  310 (510)
                      +-.+-     .+.......++.....|+-|.-.+++.++.+ +-+|++.....+..||.+.|+..++.+++.+..+.|+
T Consensus        79 ~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   79 YAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            33322     2344556677888888888888888888775 3356777778888899999999999999988888875

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=91.86  E-value=7.3  Score=33.14  Aligned_cols=130  Identities=13%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 010459          171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPDHITYNL  249 (510)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~  249 (510)
                      .|++.---.|-.+....|+..+|...|++...--+--|....-.+.++....++...|...++.+-+... -.+..+.-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            4566666667777777777777777777765544455666666677777777777777777777665421 012223334


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHH
Q 010459          250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFY  302 (510)
Q Consensus       250 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~  302 (510)
                      +-..+...|.+.+|..-|+.....-..|....|-.  ..+.+.|+.+++..-+
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~aq~  216 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREANAQY  216 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHHHHH
Confidence            55677777777777777777765533333333322  3344556555544333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.33  E-value=14  Score=35.46  Aligned_cols=63  Identities=10%  Similarity=-0.136  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC---CHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          382 NVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP---DIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      ...+|..+...+.+.|+++.|...+..+...+..+   ++...-.-.+.....|+..+|+..++..
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45677777788888888888888888777643111   1222222233344556667777766554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.32  E-value=26  Score=38.55  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             CCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHh
Q 010459          206 SPQSDTYDGLIQAYGKYK--MYDEIDMCLKMMKL  237 (510)
Q Consensus       206 ~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~  237 (510)
                      .|+ .-.-.+|..|.+.+  .+++|+....+...
T Consensus       788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            455 34457888888887  67777777776664

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.12  E-value=11  Score=33.87  Aligned_cols=182  Identities=13%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      .|+..+. -.+.|++++|.+.|+.+.......| ...+--.++.++-+.++++.|+..+++..+.-..-...-|-.-|.+
T Consensus        37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          37 LYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            3444433 3466777777777777765332222 3344555666677777777777777777655322222334444444


Q ss_pred             HHh-------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHH
Q 010459          184 YSK-------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT-Y-NLLIQEF  254 (510)
Q Consensus       184 ~~~-------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~-~~li~~~  254 (510)
                      .+.       ..|...+.+-|..|.+            +|.-|=.+.-..+|..-...+.      |... + -.+..-|
T Consensus       116 Ls~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~------d~LA~~Em~IaryY  177 (254)
T COG4105         116 LSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN------DALAGHEMAIARYY  177 (254)
T ss_pred             HHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH------HHHHHHHHHHHHHH
Confidence            432       1222233333333211            2222212222222222222211      0000 1 1234566


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCccC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          255 ACAGLLKRMEGTYKSMLTKRMHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      .+.|.+..|..-+++|.+. .+-.   ...+-.+..+|-..|-.++|...-+-+.
T Consensus       178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            7777777777777777665 1111   2334455666667777666666655443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.87  E-value=1.4  Score=40.48  Aligned_cols=102  Identities=8%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459          133 EKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA---LKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP  207 (510)
Q Consensus       133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  207 (510)
                      .|......+-..++..-....+++++...+-.+...-   ..|+  .++|--++.    .-++++++.++..=..-|+-|
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~  133 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP  133 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence            4556666667777777777888999988887776431   1122  233333332    236778998888888999999


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      |-+|++.||+.+.+.+++.+|.++.-.|...
T Consensus       134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999999988887776643

>PRK11906 transcriptional regulator; Provisional

Probab=90.73  E-value=17  Score=35.82  Aligned_cols=78  Identities=6%  Similarity=-0.045  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          332 RLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       332 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      ++.++........+.|......+..+.+..++.+.|...|++....++. ...+|...-..+.-+|+.++|.+.+++..
T Consensus       322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3444444444555555555555555555555566666666666554332 23333333334455666666666666643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.64  E-value=16  Score=34.93  Aligned_cols=290  Identities=11%  Similarity=-0.018  Sum_probs=167.2

Q ss_pred             hHHHHHHHHHh--cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHH---
Q 010459          105 HFWAVIRFLKN--SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE--EGLMEEAVRAFQEMEGFALKPSLEIY---  177 (510)
Q Consensus       105 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~---  177 (510)
                      -|.++-.++..  .|+-..|++.-.+-.  .-+..|..-.-.|+.+-..  .|+.++|.+-|+.|..     |..+-   
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllG  156 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLG  156 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHh
Confidence            45566665544  566677776665443  2344555555555555443  5999999999999984     33332   


Q ss_pred             -HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHH
Q 010459          178 -NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG-CSPDHIT--YNLLIQE  253 (510)
Q Consensus       178 -~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~--~~~li~~  253 (510)
                       ..|.-..-+.|+-+.|...-++.-+.-.. -...+.+++...+..|+|+.|+++.+.-.+.. +.+++.-  -..|+.+
T Consensus       157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA  235 (531)
T COG3898         157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA  235 (531)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence             33333445678888888777776544322 35678899999999999999999999876542 3454332  2233333


Q ss_pred             HHH---cCCHHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 010459          254 FAC---AGLLKRMEGTYKSMLTKRMHLRSS-TMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM  329 (510)
Q Consensus       254 ~~~---~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  329 (510)
                      -+.   .-+...|...-.+-.  .+.||.. .-.....++.+.|++.++-.|++.+-+..-.|+.  .  ++..+.+.|+
T Consensus       236 kA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd  309 (531)
T COG3898         236 KAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD  309 (531)
T ss_pred             HHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC
Confidence            221   234555555444433  3455532 3334567888999999999999999887655543  2  2334445554


Q ss_pred             h--hHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCChhHHHHHH
Q 010459          330 F--SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA-YLKMKDFKHLRVLL  406 (510)
Q Consensus       330 ~--~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~  406 (510)
                      .  +.+.+. +.+.++.+.+..+.-+...+-...|++..|..--+...+.  .|....|-.|.+. -+..|+-.++...+
T Consensus       310 ta~dRlkRa-~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl  386 (531)
T COG3898         310 TALDRLKRA-KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL  386 (531)
T ss_pred             cHHHHHHHH-HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence            3  222222 3334444445555555555555555555444433333322  3444445444442 23346666666555


Q ss_pred             Hhhhh
Q 010459          407 SELPT  411 (510)
Q Consensus       407 ~~m~~  411 (510)
                      -+-.+
T Consensus       387 Aqav~  391 (531)
T COG3898         387 AQAVK  391 (531)
T ss_pred             HHHhc
Confidence            55544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=90.61  E-value=17  Score=35.08  Aligned_cols=171  Identities=9%  Similarity=0.030  Sum_probs=107.7

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKS--RINEFNSQKIIGMLCE---EGLMEEAVRAFQEMEGFALKPSLEI  176 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~  176 (510)
                      ++.+.-.++-.|....+++...++.+.+......  .-...+--...-++-+   .|+-++|++++..+....-.++..+
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3334445666788899999999999999763211  1122222233445556   7999999999999666666788889


Q ss_pred             HHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----HHHHHHHH---HH-HHhCC
Q 010459          177 YNSIIHGYSK---------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM----YDEIDMCL---KM-MKLDG  239 (510)
Q Consensus       177 ~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----~~~a~~~~---~~-m~~~g  239 (510)
                      |..+...|-.         ....++|.+.|.+--+  +.||..+=-.+...+.-.|.    -.+..++-   .. +.+.|
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg  297 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG  297 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence            9888877643         2236778888876533  33444332222222223332    12233332   22 22333


Q ss_pred             C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          240 C---SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       240 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      .   ..|-..+.+++.++.-.|+.++|.+..++|....
T Consensus       298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            2   3466677889999999999999999999999773

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.49  E-value=5.5  Score=36.06  Aligned_cols=98  Identities=17%  Similarity=0.123  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL--KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSP-QSDTYDGL  215 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~l  215 (510)
                      ..|+.-++.| +.|++..|...|....+...  ......+-.|...+...|++++|..+|..+.+.- -.| -+.++--|
T Consensus       143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            3577666655 66778888888888876631  1123445567888888888888888888876542 122 23566667


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhC
Q 010459          216 IQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       216 i~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      .....+.|+.++|..+|+++.+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            77777888888888888888765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.46  E-value=15  Score=38.63  Aligned_cols=144  Identities=16%  Similarity=0.193  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG----KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      ...-|+...+...++-|+.+-+.   .+  .|..+...+...|+    +.|+.++|..-+-+-... ++|     ..+|.
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~  405 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK  405 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence            34556666667777777666543   22  24445555555444    568888887766554421 122     33566


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcchh
Q 010459          253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEVYIKNYMFS  331 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~  331 (510)
                      -|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. .|   ....+..+.+.+..+
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~  480 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD  480 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence            677777777777778888888776 55566778888888888887766665433 2211 12   233444555555555


Q ss_pred             HHHHH
Q 010459          332 RLDDL  336 (510)
Q Consensus       332 ~a~~~  336 (510)
                      +|..+
T Consensus       481 ~a~~L  485 (933)
T KOG2114|consen  481 EAELL  485 (933)
T ss_pred             HHHHH
Confidence            55444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.39  E-value=20  Score=37.10  Aligned_cols=184  Identities=13%  Similarity=0.048  Sum_probs=102.9

Q ss_pred             CcHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC---
Q 010459          120 RQIPQVFDMWKNIEKSRINEFNSQKIIGM-LCEEGLMEEAVRAFQEMEG-------FALKPSLEIYNSIIHGYSKIG---  188 (510)
Q Consensus       120 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g---  188 (510)
                      ..|.+.++...+.....+-...-.....+ ++...|++.|+..|....+       .|   +....+.+-..|.+..   
T Consensus       229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence            45666666655421122222222233333 5566788888888888766       44   3335556666666643   


Q ss_pred             --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHH
Q 010459          189 --KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA--CAGLLKRM  263 (510)
Q Consensus       189 --~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A  263 (510)
                        +.+.|+.++...-+.|. |+....-..+..... ..+...|.++|...-+.|. +...-+-+++--..  -..+.+.|
T Consensus       306 ~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHH
Confidence              55668888877777664 355444444444333 3456778888888877773 33333333322222  23367778


Q ss_pred             HHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459          264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT  310 (510)
Q Consensus       264 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  310 (510)
                      ..++.+.-+.| .|-..--...+..+.. +..+.+.-.+..+.+.|.
T Consensus       384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            88888777776 3332222333444444 666666666666666553

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.11  E-value=16  Score=34.13  Aligned_cols=153  Identities=10%  Similarity=-0.026  Sum_probs=109.4

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD----GLIQAYGKYKMYD  226 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----~li~~~~~~g~~~  226 (510)
                      ..|+..+|-..++++.+. .+.|..+|+-.=++|.-.|+.+.-...+++.... -.||...|.    .+.-++..+|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            467888888888888865 3568889999999999999999999999888654 234443443    3333445789999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459          227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK---RMHLRSSTMVAILDAYMNFGMLDKMEKFYK  303 (510)
Q Consensus       227 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  303 (510)
                      +|++.-++..+.+ +-|.-.-.++...+--+|+..++.++..+-...   +--.-..-|-...-.+...+.++.|++||+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999999888765 456666677777788889999999887654321   111112334444445666789999999998


Q ss_pred             HHH
Q 010459          304 RLL  306 (510)
Q Consensus       304 ~m~  306 (510)
                      .-+
T Consensus       272 ~ei  274 (491)
T KOG2610|consen  272 REI  274 (491)
T ss_pred             HHH
Confidence            644

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.95  E-value=1.4  Score=27.45  Aligned_cols=27  Identities=15%  Similarity=0.079  Sum_probs=13.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGF  168 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~  168 (510)
                      +..+...|.+.|++++|+++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334444555555555555555555444

>PRK11906 transcriptional regulator; Provisional

Probab=89.85  E-value=19  Score=35.52  Aligned_cols=130  Identities=10%  Similarity=0.024  Sum_probs=57.4

Q ss_pred             hhH--HHHHHHHHhcC-----CCCcHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 010459          104 DHF--WAVIRFLKNSS-----RSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCE---------EGLMEEAVRAFQEME  166 (510)
Q Consensus       104 ~~~--~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---------~g~~~~A~~~~~~m~  166 (510)
                      ..|  ..++++.....     ..+.|..+|.+........|+- ..|..+-.++..         ..+..+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  45555554422     2345556666655333444443 223222222211         123344455555555


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          167 GFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       167 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      +.+ .-|......+-.+....++++.|..+|++....+  || ..+|-..-....-+|+.++|.+.+++..
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            444 2245555555444455555555555555555432  22 1222222222233455555555555533

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.70  E-value=8.5  Score=31.31  Aligned_cols=79  Identities=11%  Similarity=0.028  Sum_probs=48.6

Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459          109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI  187 (510)
Q Consensus       109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  187 (510)
                      -.....+.|++++|.+.|+.+.......| .....-.|+.+|-+.+++++|...+++..+....--.+-|-..+.|++.-
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            33444567788888888887765322222 23445567778888888888888888877764332234555555555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.39  E-value=23  Score=34.73  Aligned_cols=370  Identities=11%  Similarity=0.065  Sum_probs=190.0

Q ss_pred             hHHHHHHH--HHhcCCCCcHHHHHHHHHhhc-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 010459          105 HFWAVIRF--LKNSSRSRQIPQVFDMWKNIE-KSRI------------NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-  168 (510)
Q Consensus       105 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~-~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-  168 (510)
                      .|-.+..+  +-+.+.+++|.+.+..+.... +..|            |-+.-+..++.+.+.|.+.+++.++++|... 
T Consensus        79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l  158 (549)
T PF07079_consen   79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL  158 (549)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            34444443  245678888888887776521 2211            2223366777788888888888888777643 


Q ss_pred             ---CCCCCHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHcc--
Q 010459          169 ---ALKPSLEIYNSIIHGYSKIGK---------------FNEALLFLNEMKEM------NLSPQSDTYDGLIQAYGKY--  222 (510)
Q Consensus       169 ---g~~~~~~~~~~li~~~~~~g~---------------~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~--  222 (510)
                         ...-|..+||.++-.+.+.=-               ++.++-...+|...      .+.|...-+..++....-.  
T Consensus       159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~  238 (549)
T PF07079_consen  159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK  238 (549)
T ss_pred             hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence               233677788876555543211               11122222222111      1223333333333322211  


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc----CHHHHHHHHHHHHhcCChhH
Q 010459          223 KMYDEIDMCLKMMKLDGCSPDHI-TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL----RSSTMVAILDAYMNFGMLDK  297 (510)
Q Consensus       223 g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~  297 (510)
                      .+..--.++++.-...-+.|+-. ....++..+..  +.+++..+-+.+....+.+    =..+|..++..+.+.++..+
T Consensus       239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~  316 (549)
T PF07079_consen  239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE  316 (549)
T ss_pred             hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            11111222222222233344422 22344444444  5666666665554432221    24688999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHH-------HHHHHHHHhh----cchhHHHHHHHHHHhhcCCchHHHHHHH---HHhhhhcc
Q 010459          298 MEKFYKRLLNSRTPLKEDLV-------RKLAEVYIKN----YMFSRLDDLGDDLASRIGRTELVWCLRL---LSHACLLS  363 (510)
Q Consensus       298 a~~~~~~m~~~~~~~~~~~~-------~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~  363 (510)
                      |.+.+.-+.--  .|+...-       ..+.+..+.-    .+...-..++...............-++   .-+...|.
T Consensus       317 a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~  394 (549)
T PF07079_consen  317 AKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQ  394 (549)
T ss_pred             HHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCC
Confidence            99988776543  2332222       1222222210    1111222222323322222222222222   23445555


Q ss_pred             -cccHHHHHHHHHHCCCCcCHHHHHHHH----HHHHcC---CChhHHHHHHHhhhhCCCCCCH----HHHHHHHHh--hh
Q 010459          364 -HRGIDSVVREMESAKVRWNVTTANIIL----LAYLKM---KDFKHLRVLLSELPTRHVKPDI----VTIGILYDA--RR  429 (510)
Q Consensus       364 -~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~--~~  429 (510)
                       -++|+++++.+.+--.- |...-|.+.    .+|.+.   ....+-+.+-+-..+.|+.|-.    ..-|.|-+|  +.
T Consensus       395 ~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy  473 (549)
T PF07079_consen  395 CDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY  473 (549)
T ss_pred             ccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence             57788888887764211 333333322    244332   3344445555555678887744    345566665  45


Q ss_pred             hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      ..|++.++.-.-..+.  .+.|++.++..+.-......++++|...+..++.
T Consensus       474 sqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~  523 (549)
T PF07079_consen  474 SQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP  523 (549)
T ss_pred             hcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence            6788888877655552  2335667777776666678899999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.03  E-value=7.2  Score=33.34  Aligned_cols=60  Identities=15%  Similarity=0.392  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (510)
                      .+..+.+.|++.|+.+.|++.|.++.+....+.  ...+-.+|......+++..+.....+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            344555666666666666666666654432222  233445555555556665555555444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=88.65  E-value=1.1  Score=26.51  Aligned_cols=23  Identities=17%  Similarity=0.446  Sum_probs=12.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHH
Q 010459          177 YNSIIHGYSKIGKFNEALLFLNE  199 (510)
Q Consensus       177 ~~~li~~~~~~g~~~~a~~~~~~  199 (510)
                      |+.|-..|.+.|++++|.++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555555555555555555555

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.53  E-value=15  Score=36.36  Aligned_cols=53  Identities=8%  Similarity=0.135  Sum_probs=23.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010459          253 EFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRL  305 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m  305 (510)
                      +.-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-
T Consensus       268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            333445555555555555433211 11223344555555555555555555443

The molecular function of this protein is uncertain.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=88.35  E-value=12  Score=30.37  Aligned_cols=53  Identities=19%  Similarity=0.122  Sum_probs=25.1

Q ss_pred             hcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          186 KIGKFNEALLFLNEMKEMNL--SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       186 ~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      +.|++++|.+.|+.+...-.  .-...+--.|+.+|.+.+++++|...+++..+.
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            44555555555555544311  112233344555555555555555555555544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.33  E-value=1.5  Score=27.37  Aligned_cols=25  Identities=32%  Similarity=0.574  Sum_probs=11.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          283 VAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       283 ~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      ..+..+|...|++++|++++++.++
T Consensus         5 ~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    5 LALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444444444444444444443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=88.22  E-value=33  Score=36.02  Aligned_cols=46  Identities=11%  Similarity=0.124  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEE  152 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  152 (510)
                      ..+.+|-.|.++|.+++|.++.....  .........+-..+..|...
T Consensus       113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~--~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  113 PIWALIYYCLRCGDYDEALEVANENR--NQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             EHHHHHHHHHTTT-HHHHHHHHHHTG--GGS-TTTTHHHHHHHHCTTT
T ss_pred             ccHHHHHHHHhcCCHHHHHHHHHHhh--hhhcchhHHHHHHHHHHHhC
Confidence            34455555555555555555553332  33344444455555555443

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=88.09  E-value=17  Score=31.60  Aligned_cols=62  Identities=19%  Similarity=0.174  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEM-NLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      ..+......+...++...+...+...... ........+..+...+...++...+...+....
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL  122 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44444444444555555555444444331 112233333444444444444444444444444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.02  E-value=20  Score=32.34  Aligned_cols=186  Identities=13%  Similarity=0.183  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL--KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL  215 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  215 (510)
                      -...|+.-+.- .+.|++++|.+.|+.+..+-+  +-...+--.++.++-+.++.+.|+..+++....-..-...-|..-
T Consensus        34 ~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          34 ASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            33444444333 367888888888888876521  112345555666777788888888888777665333233455555


Q ss_pred             HHHHHcc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 010459          216 IQAYGKY-------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDA  288 (510)
Q Consensus       216 i~~~~~~-------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  288 (510)
                      |.+.+.-       .+...+...|..+.            .+|.-|=.+.-..+|..-.......    =...=..+.+-
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Iary  176 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARY  176 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence            5555522       12222222222222            1111111111122222222111100    00011235677


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459          289 YMNFGMLDKMEKFYKRLLNSRTPLKE---DLVRKLAEVYIKNYMFSRLDDLGDDLA  341 (510)
Q Consensus       289 ~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~  341 (510)
                      |.+.|.+..|..-++.|++. .+-+.   ..+-.+..+|-+.|..++|.+....+.
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            88999999999999999886 33333   344567788888888888887755444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=87.97  E-value=27  Score=33.80  Aligned_cols=167  Identities=11%  Similarity=-0.034  Sum_probs=91.6

Q ss_pred             CCHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 010459          207 PQSDTYDGLI-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE--FACAGLLKRMEGTYKSMLTKRMHLRSSTMV  283 (510)
Q Consensus       207 p~~~t~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  283 (510)
                      |...+|-.|= .++.-.|+.++|.++-....+..   ....+...+++  +--.++.+.|...|++-...+  |+...-.
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk  240 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK  240 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence            3344443332 23345688888888777766432   11223333433  334677888888888776553  3432222


Q ss_pred             ---HHHHH----------HHhcCChhHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459          284 ---AILDA----------YMNFGMLDKMEKFYKRLLNS---RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT  347 (510)
Q Consensus       284 ---~ll~~----------~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  347 (510)
                         ...+.          ..+.|.+..|.+.+.+.+..   ...++...|--......+.|+..++..--.........-
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence               12222          24578899999999888753   334455555555556666777776655433322222211


Q ss_pred             hHHHHHHHHHhhhhcccccHHHHHHHHHHCC
Q 010459          348 ELVWCLRLLSHACLLSHRGIDSVVREMESAK  378 (510)
Q Consensus       348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  378 (510)
                      .-.+-.-..++...+++++|.+-|+...+..
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            2222222334555577778888777766553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.88  E-value=7.2  Score=37.37  Aligned_cols=63  Identities=16%  Similarity=0.035  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      .+++.+.-+|.+.+++..|++.-...++.+. +|+-..=-=-.+|...|+++.|...|+.+.+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            3444455555555555555555555544431 23333333444555555555555555555544

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=87.78  E-value=10  Score=30.91  Aligned_cols=50  Identities=14%  Similarity=0.063  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHcCCC-hhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhc
Q 010459          382 NVTTANIILLAYLKMKD-FKHLRVLLSELPTRHVKPDIVTIGILYDARRIG  431 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~  431 (510)
                      +..+|.+++.+..+... --.+..+|+.|++.+.+++..-|..++.++.+.
T Consensus        78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen   78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence            56778888888877666 445788888888888888889999999887766

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=87.77  E-value=22  Score=32.68  Aligned_cols=63  Identities=8%  Similarity=0.023  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459          205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-GCSPDHITYNLLIQEFACAGLLKRMEGTY  267 (510)
Q Consensus       205 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~  267 (510)
                      -.++..+...+|..+++.+++..-.+.++.-... +...|...|..+|..-...|+..-..++.
T Consensus       198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            3445555555555555555555555555544433 33445555555555555555554444443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.73  E-value=13  Score=34.77  Aligned_cols=152  Identities=11%  Similarity=-0.035  Sum_probs=98.0

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH--HHHHH--HHHHHHhcCChh
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS--STMVA--ILDAYMNFGMLD  296 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~--ll~~~~~~g~~~  296 (510)
                      -.|+..+|...++++.+.- +.|...++-.-++|.-+|+.+.-...++++... ..||.  .+|..  ..-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            4578888888888887653 668888998899999999999999999888744 12232  33333  333444678999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc----hHHHHHHHHHhhhhcccccHHHHHH
Q 010459          297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT----ELVWCLRLLSHACLLSHRGIDSVVR  372 (510)
Q Consensus       297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~  372 (510)
                      +|++.-++..+.+ +.|.-...++...+--+|++.++.++.......-...    ..-|--....+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999888877655 4455566677777777888888877733322111100    0011111223334467788888887


Q ss_pred             HHH
Q 010459          373 EME  375 (510)
Q Consensus       373 ~m~  375 (510)
                      +=.
T Consensus       272 ~ei  274 (491)
T KOG2610|consen  272 REI  274 (491)
T ss_pred             HHH
Confidence            543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.64  E-value=23  Score=32.59  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHH
Q 010459          247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL-----NSRTPLKEDLV  317 (510)
Q Consensus       247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~  317 (510)
                      ++..-+.|..+|.+.+|.++.+...+.+ +.+...+-.++..+...||--.+..-++++.     +.|+..|..++
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie  356 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE  356 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence            4455567777888888888777776653 3366677777777777777666655555543     24655554433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=87.56  E-value=7  Score=37.47  Aligned_cols=53  Identities=11%  Similarity=-0.037  Sum_probs=23.7

Q ss_pred             hhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          358 HACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       358 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      +.+.+++..|++..++..+.+.. |+...--=-.+|...|+++.|+..|+.+++
T Consensus       267 ~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  267 YLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            33333334444444444443322 333333334455555555555555555554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.04  E-value=12  Score=34.02  Aligned_cols=97  Identities=10%  Similarity=0.133  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-ccC-HHHHHHHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM-HLR-SSTMVAIL  286 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll  286 (510)
                      .|+.-+..| +.|++.+|...|....+....  .....+-.|-.++...|++++|..+|..+.+.-. .|. +.++.-|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            577666544 456788888888887765311  1122333477788888888888888888776421 121 34666667


Q ss_pred             HHHHhcCChhHHHHHHHHHHhc
Q 010459          287 DAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       287 ~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ....+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            7777888888888888887765

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.66  E-value=18  Score=30.46  Aligned_cols=123  Identities=11%  Similarity=0.071  Sum_probs=54.8

Q ss_pred             HhcCCCCcHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCC
Q 010459          114 KNSSRSRQIPQVFDMWKNIEKSRINE-FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSII--HGYSKIGK  189 (510)
Q Consensus       114 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li--~~~~~~g~  189 (510)
                      ++.+..++|+.-|..+.+ .|...=+ -..--.-......|+...|...|+++-.....|-.. -..-|=  -.+...|.
T Consensus        69 A~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          69 AQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            445556666666666654 3332111 111122233445566666666666665443222221 011111  12234455


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010459          190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~  237 (510)
                      ++......+-+-..+-..-...-.+|--+-.|.|++.+|.+.|.++..
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            555555544443333222233334455555555666666666655553

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=86.58  E-value=14  Score=30.23  Aligned_cols=94  Identities=10%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             HHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 010459          200 MKEMNLSPQSD--TYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-----SPDHITYNLLIQEFACAGL-LKRMEGTYKSML  271 (510)
Q Consensus       200 m~~~g~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~  271 (510)
                      |++.+..++..  ..|+++.-...-++.....++++.+.....     ..+..+|.+++.+.....- ---+..+|+.|+
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk  107 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK  107 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            34444444433  336666666666666666666666532100     2355667777777755554 345667777777


Q ss_pred             HCCCccCHHHHHHHHHHHHhcC
Q 010459          272 TKRMHLRSSTMVAILDAYMNFG  293 (510)
Q Consensus       272 ~~g~~p~~~t~~~ll~~~~~~g  293 (510)
                      +.+.+++..-|..+|++|.+..
T Consensus       108 ~~~~~~t~~dy~~li~~~l~g~  129 (145)
T PF13762_consen  108 KNDIEFTPSDYSCLIKAALRGY  129 (145)
T ss_pred             HcCCCCCHHHHHHHHHHHHcCC
Confidence            7777777888888888776653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.56  E-value=12  Score=32.07  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      ..+..+..-|++.|+.++|++.|.++.+....|.  ...+-.+|+...-.+++..+.....+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4566666777777777777777777766543332  2344556666666677777666665554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.49  E-value=19  Score=30.41  Aligned_cols=124  Identities=11%  Similarity=0.072  Sum_probs=59.9

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHH--HHHHcCCH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSD-TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT-YNLLIQ--EFACAGLL  260 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~--~~~~~g~~  260 (510)
                      ++.+..++|+.-|.++.+.|...=++ .---.-......|+...|...|+++-.....|-..- ..-|=.  .+..+|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            34455556666666665554331000 001111223445666666666666654432232221 111111  23455666


Q ss_pred             HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ++.....+.+-..+-+.-...-..|--+-.+.|++..|.+.|..+...
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            666666555554443333444445555555667777777777666553

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=86.42  E-value=8.1  Score=37.08  Aligned_cols=262  Identities=12%  Similarity=0.027  Sum_probs=154.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHH--HH--CCCC-CCHHHHHHHHHH
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLE----IYNSIIHGYSKIGKFNEALLFLNEM--KE--MNLS-PQSDTYDGLIQA  218 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m--~~--~g~~-p~~~t~~~li~~  218 (510)
                      -+||.|+......+|+...+-|.+ |..    .|..|-++|.-.+++++|++....=  +.  .|-+ -...+...|-+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            488999999999999999988744 443    4555666777777888888764321  11  0100 012223334444


Q ss_pred             HHccCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH---
Q 010459          219 YGKYKMYDEIDMCLKM----MKLDGCS-PDHITYNLLIQEFACAGL--------------------LKRMEGTYKSM---  270 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~----m~~~g~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m---  270 (510)
                      +--.|.+++|.-.-.+    ..+.|-. .....+-.+-..|...|+                    ++.|.++|.+=   
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            4455777777654222    2222211 112223334444544432                    23344555432   


Q ss_pred             -HHCCCc-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHHhhcchhHHHHHHHHHH--
Q 010459          271 -LTKRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTP-LKEDLVRKLAEVYIKNYMFSRLDDLGDDLA--  341 (510)
Q Consensus       271 -~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--  341 (510)
                       .+.|-. .-...|..|-+.|.-.|+++.|...++.=.+    .|-. .....+..|-.++.-.|+++.|.+.++...  
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence             222211 1124566677777778999999988875432    2321 123455667777777788888887766543  


Q ss_pred             --hhcCC--chHHHHHHHHHhhhhcccccHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          342 --SRIGR--TELVWCLRLLSHACLLSHRGIDSVVREMESA----K-VRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       342 --~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                        ....+  ...++.++...|.-..++++|+..+.+-...    + ..-....+.+|-.+|...|..++|+.+...-.
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence              22222  3556777888888888888888877653321    1 11245678889999999999999887766554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.15  E-value=17  Score=29.73  Aligned_cols=52  Identities=15%  Similarity=0.141  Sum_probs=33.2

Q ss_pred             hcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459          115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF  168 (510)
Q Consensus       115 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  168 (510)
                      ..++++++..+++.|.-.+.-.|...++-..+  +.+.|++++|.++|++..+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence            36777777777777754333334444554443  44778888888888887765

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=86.10  E-value=28  Score=32.08  Aligned_cols=96  Identities=7%  Similarity=0.036  Sum_probs=48.1

Q ss_pred             ChhhHHHHHHHHHh-cC-CCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH
Q 010459          102 TKDHFWAVIRFLKN-SS-RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-ALKPSLEIYN  178 (510)
Q Consensus       102 ~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~  178 (510)
                      |+.+-..+++.... .+ ....-.++.+.+....+..++..+-..+|..+++.+++..-.++++.-... +..-|...|.
T Consensus       163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~  242 (292)
T PF13929_consen  163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA  242 (292)
T ss_pred             ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence            33344444444433 11 222333344444433334455555556666666666666666666555433 3444555666


Q ss_pred             HHHHHHHhcCChHHHHHHH
Q 010459          179 SIIHGYSKIGKFNEALLFL  197 (510)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~  197 (510)
                      ..|..-.+.|+..-..++.
T Consensus       243 ~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  243 EFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             HHHHHHHHcCCHHHHHHHh
Confidence            6666666666655444333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=85.89  E-value=2.1  Score=25.29  Aligned_cols=23  Identities=17%  Similarity=0.156  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 010459          247 YNLLIQEFACAGLLKRMEGTYKS  269 (510)
Q Consensus       247 ~~~li~~~~~~g~~~~A~~~~~~  269 (510)
                      |+.|-..|.+.|++++|.++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44445555555555555555554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=85.57  E-value=27  Score=33.13  Aligned_cols=54  Identities=7%  Similarity=0.004  Sum_probs=24.8

Q ss_pred             HHHhhhhcccccHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHcCCChhHHHHHHHh
Q 010459          355 LLSHACLLSHRGIDSVVREMESAK-----VRWNVTTANIILLAYLKMKDFKHLRVLLSE  408 (510)
Q Consensus       355 i~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  408 (510)
                      ..++...+.++++++.|+...+.-     .-....++..|-..|.+..++++|.-+...
T Consensus       129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k  187 (518)
T KOG1941|consen  129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK  187 (518)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence            334444444555555555433211     111233455555555555566655544443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=85.25  E-value=20  Score=29.77  Aligned_cols=17  Identities=12%  Similarity=0.038  Sum_probs=8.3

Q ss_pred             ccCCHHHHHHHHHHHHh
Q 010459          221 KYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~  237 (510)
                      +.|++.+|.++|+++.+
T Consensus        56 ~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   56 VRGDWDDALRLLRELEE   72 (160)
T ss_pred             HhCCHHHHHHHHHHHhc
Confidence            44455555555555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=85.11  E-value=18  Score=28.91  Aligned_cols=91  Identities=10%  Similarity=0.021  Sum_probs=63.4

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHcCC
Q 010459          183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL---IQEFACAGL  259 (510)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~  259 (510)
                      +.+..|+++.|++.|.+....-. -....||.-..++--.|+.++|+.=+++..+..-..+.....+.   -..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            45678888999999988876532 26778888888888888888888888877764222333333322   234666778


Q ss_pred             HHHHHHHHHHHHHCC
Q 010459          260 LKRMEGTYKSMLTKR  274 (510)
Q Consensus       260 ~~~A~~~~~~m~~~g  274 (510)
                      -+.|..=|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            888888777776665

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.25  E-value=34  Score=31.55  Aligned_cols=143  Identities=12%  Similarity=0.051  Sum_probs=96.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459          182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK  261 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  261 (510)
                      ......|++.+|..+|......... +...--.+..+|...|+.+.|..++..++..--........+-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            3556789999999999998776433 455667789999999999999999999986432223333334455555665555


Q ss_pred             HHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhc
Q 010459          262 RMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNY  328 (510)
Q Consensus       262 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~  328 (510)
                      +...+-.+.-..   | |...-..+...+...|+.+.|.+.+-.+.+... .-|...-..|++.+.--|
T Consensus       221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            555555554433   3 666667788889999999999888777765421 233444455555554444

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=84.12  E-value=0.79  Score=36.35  Aligned_cols=35  Identities=6%  Similarity=-0.031  Sum_probs=29.4

Q ss_pred             hhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHH
Q 010459          463 YGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVI  499 (510)
Q Consensus       463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  499 (510)
                      .-+.|.-.+|-.+|++|++.|-+||  .|+.|+.+..
T Consensus       105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~  139 (140)
T PF11663_consen  105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK  139 (140)
T ss_pred             hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence            3445777789999999999999999  8899998753

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>PHA02875 ankyrin repeat protein; Provisional

Probab=84.02  E-value=7.6  Score=38.50  Aligned_cols=138  Identities=12%  Similarity=0.042  Sum_probs=65.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccC
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEI--YNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSD--TYDGLIQAYGKYK  223 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g  223 (510)
                      ..++.|+.+-+..++    +.|..|+...  ..+.+...+..|+.+    +.+.+.+.|..|+..  ...+.+...++.|
T Consensus         8 ~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          8 DAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             HHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence            344567765554444    4566666533  334555556677764    444555666655432  1123455556677


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHH--HHHHHHHHHhcCChhHH
Q 010459          224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSST--MVAILDAYMNFGMLDKM  298 (510)
Q Consensus       224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a  298 (510)
                      +.+.+..+++.-....-..+..-++ .+...+..|+.+    +++.+.+.|..|+...  -.+.+...+..|+.+-.
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v  151 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI  151 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            7776655554321100001111222 333344556553    4444455565544321  12234444456665443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=83.97  E-value=27  Score=30.18  Aligned_cols=167  Identities=15%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      ...+......+...+++..+...+...... ........+......+...++...+.+.+.........+ .........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence            456666666677777777777776666542 123344556666666666666777777777666544332 112222222


Q ss_pred             -HHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          218 -AYGKYKMYDEIDMCLKMMKLDGC--SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       218 -~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                       .+...|+++.|...|++......  ......+......+...++.+.+...+..............+..+-..+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             55566666666666666543210  012222223333344455555555555555543211123344444444444444


Q ss_pred             hhHHHHHHHHHH
Q 010459          295 LDKMEKFYKRLL  306 (510)
Q Consensus       295 ~~~a~~~~~~m~  306 (510)
                      .+.+...+....
T Consensus       218 ~~~a~~~~~~~~  229 (291)
T COG0457         218 YEEALEYYEKAL  229 (291)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=83.86  E-value=53  Score=33.42  Aligned_cols=368  Identities=10%  Similarity=0.002  Sum_probs=182.9

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE-EGLMEEAVRAFQEMEGF-AL-KPSLEIYNSIIHGYSKIG  188 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g  188 (510)
                      .=.+.|..+.+.++|++-.  .+++.++..|...+..+.. .|+.+...+.|+..... |. -.+...|...|.--..++
T Consensus        88 ~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk  165 (577)
T KOG1258|consen   88 YEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK  165 (577)
T ss_pred             HHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc
Confidence            3345677788888888776  5777777777776665554 37777777788777643 21 124556777777777777


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---c------CCHHHHHHHHHHHHhC---C-CCCCHHHHHHHHHHHH
Q 010459          189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK---Y------KMYDEIDMCLKMMKLD---G-CSPDHITYNLLIQEFA  255 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g-~~~~~~~~~~li~~~~  255 (510)
                      ++.....++++.++--    ..-|+..-.-|.+   .      ...+++.++-......   + ..+....+..-++--.
T Consensus       166 s~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~  241 (577)
T KOG1258|consen  166 SWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST  241 (577)
T ss_pred             cHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc
Confidence            8888888888876632    2233333322221   1      1122222221111100   0 0001111111111000


Q ss_pred             H-cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CC----CCCHHHHHHHHHHHHhh
Q 010459          256 C-AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS---RT----PLKEDLVRKLAEVYIKN  327 (510)
Q Consensus       256 ~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~----~~~~~~~~~li~~~~~~  327 (510)
                      . .+..+++.....+...           .--.++-..-...+.+..++.-+++   .+    .++..+|..-++--.+.
T Consensus       242 ~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~  310 (577)
T KOG1258|consen  242 DPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITL  310 (577)
T ss_pred             CccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhc
Confidence            0 0011111111000000           0000111111112222222222221   11    12345556666666666


Q ss_pred             cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChhHHHHH
Q 010459          328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKV--RWNVTTANIILLAYLKMKDFKHLRVL  405 (510)
Q Consensus       328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~  405 (510)
                      |+++.+.-+++...-....-+..|--.+.-....|+.+-|..+...-.+--.  .|....+.+.+  .-..|+.+.|..+
T Consensus       311 g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~  388 (577)
T KOG1258|consen  311 GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVI  388 (577)
T ss_pred             ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHH
Confidence            7766666666655544445556666555555555777666666655444332  34444444444  3346789999999


Q ss_pred             HHhhhhCCCCCCHHHHH-HHHHhhhhcCccchHH---HHHHHcCCccccccccChhHHHH-----HhhccCchhHHHHHH
Q 010459          406 LSELPTRHVKPDIVTIG-ILYDARRIGFDGTGAL---EMWKRIGFLFKTVEINTDPLVLA-----VYGKGHFLRYCEEVY  476 (510)
Q Consensus       406 ~~~m~~~g~~p~~~t~~-~li~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~  476 (510)
                      ++...+.-  |+..-.. -=+....+.|+.+.+.   +++.......  .+....+.+.-     .+.-+++.+.|..++
T Consensus       389 lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l  464 (577)
T KOG1258|consen  389 LQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIIL  464 (577)
T ss_pred             HHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99888642  5543211 1122344556666666   4444332111  12222222222     334478889999999


Q ss_pred             hhcCCCCCCCCcccHHHHHHHHHhcCC
Q 010459          477 SSLEPYSREKKRWTYQNLIDLVIKHNG  503 (510)
Q Consensus       477 ~~m~~~g~~p~~~~~~~li~~~~~~g~  503 (510)
                      .++.+. .+++..-|..+++-...++.
T Consensus       465 ~~~~~~-~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  465 LEANDI-LPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence            988874 55566677777777766653

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.83  E-value=1  Score=36.98  Aligned_cols=87  Identities=15%  Similarity=0.016  Sum_probs=67.8

Q ss_pred             HHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccC
Q 010459          388 IILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH  467 (510)
Q Consensus       388 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  467 (510)
                      .+|..+.+.+..+....+++.+...+-.-+....+.++..|.+.++.++..++++..       +......++..|-+.|
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG   84 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence            467778889999999999999997766667888999999999998889999888743       2233456778888888


Q ss_pred             chhHHHHHHhhcCC
Q 010459          468 FLRYCEEVYSSLEP  481 (510)
Q Consensus       468 ~~~~A~~~~~~m~~  481 (510)
                      .+++|.-++.++..
T Consensus        85 l~~~a~~Ly~~~~~   98 (143)
T PF00637_consen   85 LYEEAVYLYSKLGN   98 (143)
T ss_dssp             SHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHHHccc
Confidence            88888888887664

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=83.74  E-value=47  Score=32.69  Aligned_cols=321  Identities=12%  Similarity=0.021  Sum_probs=175.1

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHH
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSR----INEFNSQKIIGMLCEEGLMEEAVRAFQEMEG---FALKPSLEIYNSI  180 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~l  180 (510)
                      ..+..+...|++.+++.+++++.. .-++    .+..+|+.++-+++++=        |-++.+   ..+-|+   |--|
T Consensus       133 i~a~sLIe~g~f~EgR~iLn~i~~-~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pd---yYem  200 (549)
T PF07079_consen  133 IEAHSLIETGRFSEGRAILNRIIE-RLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPD---YYEM  200 (549)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHH-HHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChH---HHHH
Confidence            556788899999999999999886 3343    78999999988888752        222221   112222   2233


Q ss_pred             HHHHHhcCC---------hHHHHHHHHHH----------------------HHCCCCCCHH-HHHHHHHHHHccCCHHHH
Q 010459          181 IHGYSKIGK---------FNEALLFLNEM----------------------KEMNLSPQSD-TYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       181 i~~~~~~g~---------~~~a~~~~~~m----------------------~~~g~~p~~~-t~~~li~~~~~~g~~~~a  228 (510)
                      |-.|.+.=+         +.-+.+++...                      ...-+.|+-. ....|+.-+.+  +.+++
T Consensus       201 ilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~  278 (549)
T PF07079_consen  201 ILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV  278 (549)
T ss_pred             HHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH
Confidence            333322110         11112222221                      2223445432 22344444444  55666


Q ss_pred             HHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH-----HHHHHHHHHHH-h---cCCh
Q 010459          229 DMCLKMMKLDGCS----PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS-----STMVAILDAYM-N---FGML  295 (510)
Q Consensus       229 ~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~-~---~g~~  295 (510)
                      .++-+.+....++    .=+.++..+++..++.++...|...+.-+.........     .+-.++-+..+ .   .-+.
T Consensus       279 ~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl  358 (549)
T PF07079_consen  279 GHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKL  358 (549)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence            6555555433222    23567888999999999999999888777644221110     00111112222 1   0112


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHH---HHHHHhhcc-hhHHHHHHHHHHhhcCCchHHHHHHH----HHhhhhccc---
Q 010459          296 DKMEKFYKRLLNSRTPLKEDLVRKL---AEVYIKNYM-FSRLDDLGDDLASRIGRTELVWCLRL----LSHACLLSH---  364 (510)
Q Consensus       296 ~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~---  364 (510)
                      ..-..++......++.. .....-|   ..-+.+.|. -+++.++++.+....+.|..+-|...    ..|...-..   
T Consensus       359 r~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~  437 (549)
T PF07079_consen  359 RDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI  437 (549)
T ss_pred             HHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            22233344333332211 1111122   222334444 67777887777766666655554432    233332222   


Q ss_pred             ccHHHHHHHHHHCCCCcC----HHHHHHHHHH--HHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHH
Q 010459          365 RGIDSVVREMESAKVRWN----VTTANIILLA--YLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGAL  438 (510)
Q Consensus       365 ~~a~~~~~~m~~~g~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~  438 (510)
                      .+-+.+-+-+.+.|+.|-    ...-|.|-+|  +...|++.++.-.-..+.+  |.|.+.+|..+--++....++++|.
T Consensus       438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~  515 (549)
T PF07079_consen  438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW  515 (549)
T ss_pred             HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            233344455567787663    3345555553  3467899988777666665  7899999988777777788999999


Q ss_pred             HHHHHcC
Q 010459          439 EMWKRIG  445 (510)
Q Consensus       439 ~~~~~~~  445 (510)
                      +++..++
T Consensus       516 ~~l~~LP  522 (549)
T PF07079_consen  516 EYLQKLP  522 (549)
T ss_pred             HHHHhCC
Confidence            9999874

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=83.09  E-value=39  Score=31.33  Aligned_cols=123  Identities=16%  Similarity=0.154  Sum_probs=65.2

Q ss_pred             HhcCChHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHhC--------CCCCC-----
Q 010459          185 SKIGKFNEALLFLNEMKEMN--LSPQSD------TYDGLIQAYGKYKMYDEIDMCLKMMKLD--------GCSPD-----  243 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g--~~p~~~------t~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~-----  243 (510)
                      .+.|+.+.|..++.+....-  ..|+..      .|+.-...+.+..++++|...+++..+.        ...|+     
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46778888888887775533  223221      2233333333333777777777664322        11222     


Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          244 HITYNLLIQEFACAGLLK---RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       244 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ..+...++.+|...+..+   +|.++++.+...... ....+..-+..+.+.++.+.+.+++.+|+..
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            234455666666666544   344555555433222 1334444455566667777777777777765

It is also involved in sporulation [].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.84  E-value=20  Score=36.41  Aligned_cols=149  Identities=12%  Similarity=0.056  Sum_probs=89.1

Q ss_pred             hcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010459          115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEAL  194 (510)
Q Consensus       115 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~  194 (510)
                      -.|+++.|-.++..+       | ....+.++..+-+.|-.++|+++         .+|..--   .....+.|+++.|.
T Consensus       598 mrrd~~~a~~vLp~I-------~-k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~  657 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTI-------P-KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF  657 (794)
T ss_pred             hhccccccccccccC-------c-hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence            356666665544322       1 34556677777777777777654         2222211   12334667777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          195 LFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       195 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      ++..+.      -+..-|..|-++..+.+++..|.+.|....         -|..|+-.+...|+.+....+=..-.+.|
T Consensus       658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g  722 (794)
T KOG0276|consen  658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQG  722 (794)
T ss_pred             HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence            766554      255677777777777788877777776655         24566666777777666666655556555


Q ss_pred             CccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459          275 MHLRSSTMVAILDAYMNFGMLDKMEKFYKR  304 (510)
Q Consensus       275 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  304 (510)
                      .. | ..|    -+|...|+++++.+++..
T Consensus       723 ~~-N-~AF----~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  723 KN-N-LAF----LAYFLSGDYEECLELLIS  746 (794)
T ss_pred             cc-c-hHH----HHHHHcCCHHHHHHHHHh
Confidence            43 2 222    345566777777776643

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=82.82  E-value=2  Score=25.11  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=15.6

Q ss_pred             CHHHHHHHHHHHHcCCChhHHH
Q 010459          382 NVTTANIILLAYLKMKDFKHLR  403 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~  403 (510)
                      |...|+.+-..|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            6667777777777777777764

>PHA02875 ankyrin repeat protein; Provisional

Probab=82.32  E-value=31  Score=34.10  Aligned_cols=174  Identities=14%  Similarity=0.063  Sum_probs=76.6

Q ss_pred             HhcCCCCcHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 010459          114 KNSSRSRQIPQVFDMWKNIEKSRINEFN--SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE--IYNSIIHGYSKIGK  189 (510)
Q Consensus       114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~  189 (510)
                      ++.|+.+-+..+++     .|..|+...  ..+.+...++.|+.+-+    +.+.+.|..|+..  ...+.+...+..|+
T Consensus        10 ~~~g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875         10 ILFGELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             HHhCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            34455544444443     555554432  33445555666776543    3334445444432  11234455556777


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHH
Q 010459          190 FNEALLFLNEMKEMNLSPQSDT---YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHIT--YNLLIQEFACAGLLKRME  264 (510)
Q Consensus       190 ~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~  264 (510)
                      .+.+..+++    .|...+...   -.+.+...+..|+.+    +++.+.+.|..|+...  -.+.+...+..|+.+-+.
T Consensus        81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            665544443    332111100   122334444556654    3334444554544321  112334445666665444


Q ss_pred             HHHHHHHHCCCccC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459          265 GTYKSMLTKRMHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK  313 (510)
Q Consensus       265 ~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~  313 (510)
                      .+    .+.|..++   ..-.+.+. ..+..|+.+    +.+.+.+.|..++
T Consensus       153 ~L----l~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n  195 (413)
T PHA02875        153 LL----IDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANID  195 (413)
T ss_pred             HH----HhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCC
Confidence            33    33443332   22223333 333445543    4445556666554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.20  E-value=16  Score=36.27  Aligned_cols=126  Identities=10%  Similarity=-0.023  Sum_probs=66.5

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYN--SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  228 (510)
                      .+..+.+|.++|++..+.|    ...+.  ....   ..|.      .++....+...|=..+-..|-.++-+.|+.++|
T Consensus       212 eA~Ti~Eae~l~rqAvkAg----E~~lg~s~~~~---~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EA  278 (539)
T PF04184_consen  212 EASTIVEAEELLRQAVKAG----EASLGKSQFLQ---HHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREA  278 (539)
T ss_pred             cccCHHHHHHHHHHHHHHH----HHhhchhhhhh---cccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHH
Confidence            3566888998888877543    11111  0000   0111      111222222222233334455666677888888


Q ss_pred             HHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHH
Q 010459          229 DMCLKMMKLDGCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAY  289 (510)
Q Consensus       229 ~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~  289 (510)
                      .+.|.+|.+.... -+......||.++...+.+.++..++.+-.+...+ .-...|+..+--.
T Consensus       279 Ik~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka  341 (539)
T PF04184_consen  279 IKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA  341 (539)
T ss_pred             HHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            8888777654211 13335556777788888888887777776433221 1234566655433

The molecular function of this protein is uncertain.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.79  E-value=3.9  Score=23.45  Aligned_cols=27  Identities=26%  Similarity=0.533  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKE  202 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (510)
                      +|..+...|...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344444444444555555544444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.67  E-value=39  Score=30.31  Aligned_cols=26  Identities=4%  Similarity=-0.028  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWK  130 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~  130 (510)
                      .|.....+|....++++|...+....
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45555666777777777777666554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=81.66  E-value=16  Score=27.66  Aligned_cols=45  Identities=7%  Similarity=0.067  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       262 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      +..+-++.+....+-|++....+.+++|.+.+++..|.++++-++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444445555556667777777777777777777777777776665

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.84  E-value=18  Score=31.30  Aligned_cols=77  Identities=10%  Similarity=-0.046  Sum_probs=49.8

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHH
Q 010459          186 KIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD---GCSPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       186 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~  262 (510)
                      +.|+ +.|++.|-.+...+.--|+...-.|...|. ..+.+++..++....+.   +-.+|+..+.+|.+.|-+.|+++.
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            3343 567777777766665556656566665555 35677777777666542   225677777777777777777777


Q ss_pred             HH
Q 010459          263 ME  264 (510)
Q Consensus       263 A~  264 (510)
                      |.
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            64

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=80.40  E-value=15  Score=27.46  Aligned_cols=44  Identities=16%  Similarity=0.179  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      +.+-++.+...++.|++....+-+++|-+.+++..|.++|+..+
T Consensus        26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33334444444555555555555555555555555555555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=80.04  E-value=55  Score=34.09  Aligned_cols=74  Identities=12%  Similarity=-0.099  Sum_probs=30.9

Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHH
Q 010459          368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKR  443 (510)
Q Consensus       368 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~  443 (510)
                      ....+.+..+-+-.+...-.-++..|.+.|..+.|.++.+.+-.+-+  ...-|..-+.-+.++|+....-.+...
T Consensus       390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~  463 (566)
T PF07575_consen  390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADR  463 (566)
T ss_dssp             HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44555555443334555556666777777777777777766643211  223455555555566655554444333

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.04  E-value=4.9  Score=24.22  Aligned_cols=25  Identities=32%  Similarity=0.603  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m  200 (510)
                      +++.|...|...|++++|+.++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4444555555555555555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 73.7 bits (179), Expect = 6e-14
 Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 5/249 (2%)

Query: 116 SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK---P 172
              S  + Q      +  +    +               +  A        G   K    
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE-IDMC 231
           +L++YN+++ G+++ G F E +  L  +K+  L+P   +Y   +Q  G+       I+ C
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 232 LKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM-LTKRMHLRSSTMVAILDAYM 290
           L+ M  +G     +   +L+ E   A +LK +     +  L  ++    +T   + D Y 
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

Query: 291 NFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV 350
             G +   +             K+  +   + V + +     L       A +  +T   
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343

Query: 351 WCLRLLSHA 359
              + L  A
Sbjct: 344 QWEKALCRA 352

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 59/427 (13%), Positives = 133/427 (31%), Gaps = 93/427 (21%)

Query: 68  VESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVF- 126
           +++ +  + +  ++Q+L  ++              K    ++   L+   +S+       
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 127 ---DMWKNIEKSRINEFNSQ-KII-------------GMLCEEGLMEEAVRAFQEMEGFA 169
              ++         N FN   KI+                     ++         E   
Sbjct: 249 VLLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--- 302

Query: 170 LKPSLEIYNSIIHGYSKIGKF-NEAL----LFLNEMKEMNLSPQSDTYDGLIQAYGKYKM 224
                 +    +    +      E L      L+ + E  +     T+D         K+
Sbjct: 303 ---VKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKH-VNCDKL 355

Query: 225 YDEIDMCLKMMK-------LDGCS--PD--HITYNLL------IQEFACAGLLKRMEGTY 267
              I+  L +++        D  S  P   HI   LL      + +     ++ ++    
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-- 413

Query: 268 KSMLTKRMHLRSSTMVAILDAYMNFGM-LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK 326
            S++ K+      + ++I   Y+   + L+     ++ +++     K      L   Y+ 
Sbjct: 414 YSLVEKQ---PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTA 386
            Y +S    +G  L   I   E +   R++     L  R ++  +R   +A   WN + +
Sbjct: 471 QYFYSH---IGHHL-KNIEHPERMTLFRMV----FLDFRFLEQKIRHDSTA---WNASGS 519

Query: 387 NIILLAYLKM-KDF---------KHLRVLLSELPT------RHVKPDIVTI-------GI 423
            +  L  LK  K +         + +  +L  LP            D++ I        I
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

Query: 424 LYDARRI 430
             +A + 
Sbjct: 580 FEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.81
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.67
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.51
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.46
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.35
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.31
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.31
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.31
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.3
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.29
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.26
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.25
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.09
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.05
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.01
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.0
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.96
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.69
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.67
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.67
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.67
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.65
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.64
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.64
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.64
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.62
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.61
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.58
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.57
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.57
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.56
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.53
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.45
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.44
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.39
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.37
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.33
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.32
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.31
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.29
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.27
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.26
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.23
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.22
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.2
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.16
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.13
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.12
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.02
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.02
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.0
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.0
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.99
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.97
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.96
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.96
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.96
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.94
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.93
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.93
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.91
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.9
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.89
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.79
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.79
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.78
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.73
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.69
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.67
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.62
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.56
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.36
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.34
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.3
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.28
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.28
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.28
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.98
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.95
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.64
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.46
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.39
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.83
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.68
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.55
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.38
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.2
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.89
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.75
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.27
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.08
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.79
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.69
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.66
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.62
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.56
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.51
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.42
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.86
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.38
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.08
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	88.78
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.56
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.89
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	87.76
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.81
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.19
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	84.08
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.92
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	82.3
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.9
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.59
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.05

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-38  Score=327.17  Aligned_cols=443  Identities=8%  Similarity=-0.075  Sum_probs=368.6

Q ss_pred             cccccccCCCcccccc-----chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCC
Q 010459           44 PISCCCLSSAPSLDYH-----STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSR  118 (510)
Q Consensus        44 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  118 (510)
                      +.+++....+... |.     +...|+.++.+|.+.|.+.+++..+.       .++.  ..|+..++..++.+|.+.|+
T Consensus        63 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~~~--~~p~~~~~~~l~~~~~~~g~  132 (597)
T 2xpi_A           63 TSTDGSFLKERNA-QNTDSLSREDYLRLWRHDALMQQQYKCAAFVGE-------KVLD--ITGNPNDAFWLAQVYCCTGD  132 (597)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHH--HHCCHHHHHHHHHHHHHTTC
T ss_pred             ccccCccCCCCCc-cccchHHHHHHHHHHHHHHHHccCchHHHHHHH-------HHHh--hCCCchHHHHHHHHHHHcCc
Confidence            3445544444433 32     34568999999999999999999998       5553  34677899999999999999


Q ss_pred             CCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhC--------------CCCCCHHHHHHHHHH
Q 010459          119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEM-EGF--------------ALKPSLEIYNSIIHG  183 (510)
Q Consensus       119 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--------------g~~~~~~~~~~li~~  183 (510)
                      +++|.++|+.+.   ..+++..+++.++.+|.+.|++++|+++|+++ +..              |..++..+|+.++.+
T Consensus       133 ~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (597)
T 2xpi_A          133 YARAKCLLTKED---LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV  209 (597)
T ss_dssp             HHHHHHHHHHTC---GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh---ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH
Confidence            999999999774   34789999999999999999999999999953 222              223468999999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------------------HHHHHHHHccCCH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTY--------------------------------------DGLIQAYGKYKMY  225 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------------------------------------~~li~~~~~~g~~  225 (510)
                      |.+.|++++|+++|++|.+.+.. +..++                                      +.++..|.+.|++
T Consensus       210 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  288 (597)
T 2xpi_A          210 YTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL  288 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence            99999999999999999886532 33333                                      3336667788999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010459          226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL  305 (510)
Q Consensus       226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m  305 (510)
                      ++|.++|+++.+.  +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++.+
T Consensus       289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  365 (597)
T 2xpi_A          289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDL  365 (597)
T ss_dssp             HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999865  589999999999999999999999999999976533 6788999999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHH
Q 010459          306 LNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTT  385 (510)
Q Consensus       306 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  385 (510)
                      .+.. +.+..+++.+..+|.+.|++++|.+.+..+....+.+..+|+.++.+|...|+.++|.++|+++.+.+.. +..+
T Consensus       366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~  443 (597)
T 2xpi_A          366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLP  443 (597)
T ss_dssp             HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHH
T ss_pred             HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHH
Confidence            8654 5678899999999999999999999999998888889999999999999999999999999999987554 7899


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCc----ccccc--ccChhHH
Q 010459          386 ANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL----FKTVE--INTDPLV  459 (510)
Q Consensus       386 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l  459 (510)
                      |+.++.+|.+.|++++|.++|+++.+.. ..+..+|..+...+.+.|++++|+++++++...    +..|+  ...+..+
T Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            9999999999999999999999998642 236889999999999999999999999998443    23344  5678889


Q ss_pred             HHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCCCCCC
Q 010459          460 LAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       460 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  507 (510)
                      ..+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|+++.|
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence            999999999999999999988742 33678999999999999998765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-36  Score=312.87  Aligned_cols=447  Identities=9%  Similarity=-0.016  Sum_probs=380.5

Q ss_pred             chHHHHHHhhhccccccccCCCcccccc-------chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChh
Q 010459           32 DRVFFAKTLIRKPISCCCLSSAPSLDYH-------STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKD  104 (510)
Q Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  104 (510)
                      +.+...+.+++.|.+.|....+... |.       +...+..+...|...|.+.+++..+....       .  ..+++.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~  151 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFV-GEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKED-------L--YNRSSA  151 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-------G--GGTCHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHH-HHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-------c--cccchh
Confidence            4566677899999999988877765 43       33567888999999999999999888432       1  256788


Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIE--------------KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL  170 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  170 (510)
                      +++.++.+|.+.|++++|.++|+.+....              +.+++..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus       152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  231 (597)
T 2xpi_A          152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA  231 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999998432111              2244689999999999999999999999999987642


Q ss_pred             CCCHHHHHH--------------------------------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010459          171 KPSLEIYNS--------------------------------------IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTY  212 (510)
Q Consensus       171 ~~~~~~~~~--------------------------------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  212 (510)
                      . +...|..                                      ++..|.+.|++++|.++|++|.+.  .++..+|
T Consensus       232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~  308 (597)
T 2xpi_A          232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL  308 (597)
T ss_dssp             T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred             h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence            2 3444333                                      356677889999999999999765  5799999


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459          213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF  292 (510)
Q Consensus       213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  292 (510)
                      +.++.+|.+.|++++|..+|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...|.+.
T Consensus       309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  386 (597)
T 2xpi_A          309 LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV  386 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence            999999999999999999999999776 4588899999999999999999999999998653 34788999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHH
Q 010459          293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR  372 (510)
Q Consensus       293 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  372 (510)
                      |++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.+.++.+....+.+..+|+.++.+|...|+.++|.++|+
T Consensus       387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  465 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ  465 (597)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999998754 44688999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhC----CCCCC--HHHHHHHHHhhhhcCccchHHHHHHHcCC
Q 010459          373 EMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTR----HVKPD--IVTIGILYDARRIGFDGTGALEMWKRIGF  446 (510)
Q Consensus       373 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~~  446 (510)
                      ++.+.... +..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|++++|.+.++++..
T Consensus       466 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (597)
T 2xpi_A          466 SSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL  544 (597)
T ss_dssp             HHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99987554 7899999999999999999999999999865    77898  78999999999999999999999999854


Q ss_pred             ccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCCc-ccHHHHHHHH
Q 010459          447 LFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKR-WTYQNLIDLV  498 (510)
Q Consensus       447 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~  498 (510)
                      .. +.+...+..+...|.+.|++++|.+.|+++.+  ..|+. ..|..+...|
T Consensus       545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred             hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence            43 33567788899999999999999999999987  45553 4555555444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.6e-34  Score=287.91  Aligned_cols=207  Identities=16%  Similarity=0.127  Sum_probs=176.8

Q ss_pred             cHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 010459          121 QIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK---------F  190 (510)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~  190 (510)
                      .+..+.+.+.+ .+..+. ..+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+.         +
T Consensus         8 ~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            8 PSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             hHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            34445555655 555443 346888999999999999999999999999999999999999999987664         6


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459          191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM  270 (510)
Q Consensus       191 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  270 (510)
                      ++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459          271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY  328 (510)
Q Consensus       271 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  328 (510)
                      .+.|+.||..||++||++|++.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999987753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2e-33  Score=281.40  Aligned_cols=198  Identities=9%  Similarity=0.064  Sum_probs=183.4

Q ss_pred             hhhccCCCChh-hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHH
Q 010459           94 ILQHDGDWTKD-HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL---------MEEAVRAFQ  163 (510)
Q Consensus        94 ~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~  163 (510)
                      +.+++..+++. .++.+|++|++.|++++|.++|+.|.+ .|+.||..+||+||.+|++.+.         +++|.++|+
T Consensus        16 ~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~   94 (501)
T 4g26_A           16 AKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK   94 (501)
T ss_dssp             --------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred             HHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence            33444444443 588999999999999999999999998 8999999999999999998764         789999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 010459          164 EMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD  243 (510)
Q Consensus       164 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  243 (510)
                      +|.+.|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus        95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A           95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459          244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF  292 (510)
Q Consensus       244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  292 (510)
                      ..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus       175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=2e-25  Score=218.73  Aligned_cols=381  Identities=9%  Similarity=-0.058  Sum_probs=325.8

Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459          109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG  188 (510)
Q Consensus       109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  188 (510)
                      +...+.+.|++++|.+.+..+.+  ..+.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            34567789999999999998875  234456677788889999999999999999888764 457889999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010459          189 KFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTY  267 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  267 (510)
                      ++++|.+.|+++.+..  | +..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus        82 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999998753  4 56689999999999999999999999998764 335667778888899999999999999


Q ss_pred             HHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459          268 KSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT  347 (510)
Q Consensus       268 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  347 (510)
                      +++.+.... +..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+.......+.+
T Consensus       159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  236 (388)
T 1w3b_A          159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH  236 (388)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence            999876422 57899999999999999999999999999865 4467788999999999999999999999999888999


Q ss_pred             hHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHh
Q 010459          348 ELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDA  427 (510)
Q Consensus       348 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~  427 (510)
                      ..+|..+...+...|+.++|.+.|+++.+..+. +..+|..+...|.+.|++++|...|+++.+.. .++..++..+...
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  314 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence            999999999999999999999999999987654 67889999999999999999999999998752 4467889999999


Q ss_pred             hhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCC-cccHHHHHHHHHhcC
Q 010459          428 RRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKK-RWTYQNLIDLVIKHN  502 (510)
Q Consensus       428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g  502 (510)
                      +...|++++|++.++++.... +.....+..+...|.+.|++++|.+.|+++.+  ..|+ ...|..+-..+...|
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence            999999999999999986542 23445677888899999999999999999987  4554 346666666666655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=7.6e-24  Score=207.38  Aligned_cols=361  Identities=10%  Similarity=-0.001  Sum_probs=310.9

Q ss_pred             HHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 010459           69 ESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGM  148 (510)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  148 (510)
                      ..+.+.|++++++..+.       ..++.. +.++..+..+...+.+.|++++|...++...+  ..+.+..+|..+...
T Consensus         7 ~~~~~~g~~~~A~~~~~-------~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~   76 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCM-------QLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHTCHHHHHHHHH-------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHH-------HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHH
Confidence            44567788888888776       444332 22345666777888999999999999998874  456788999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  228 (510)
                      |.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +..++..+...+.+.|++++|
T Consensus        77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A  154 (388)
T 1w3b_A           77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHH
Confidence            999999999999999998763 335678999999999999999999999999886422 456778888899999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      .+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+.. +...|..+...+...|++++|...+.+..+.
T Consensus       155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999998764 446889999999999999999999999999986432 5778899999999999999999999999876


Q ss_pred             CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHH
Q 010459          309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI  388 (510)
Q Consensus       309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  388 (510)
                      . +.+..++..+...|.+.|++++|...+.......+.+..+|..+...+...|+.++|.+.|+++.+..+ .+..+|+.
T Consensus       233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~  310 (388)
T 1w3b_A          233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNN  310 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHH
Confidence            4 345788999999999999999999999999999888999999999999999999999999999998754 37899999


Q ss_pred             HHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459          389 ILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKRIGFL  447 (510)
Q Consensus       389 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~  447 (510)
                      +...+.+.|++++|...|+++.+.  .| +..++..+...+.+.|++++|++.++++...
T Consensus       311 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          311 LANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999874  35 4678899999999999999999999998543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=2.2e-21  Score=193.67  Aligned_cols=301  Identities=12%  Similarity=-0.014  Sum_probs=167.7

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII  181 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  181 (510)
                      ++..+..+...+.+.|++++|.++|+.+.+  ..+.+..+|..+..+|.+.|++++|...|+++.+.+ +.+..+|..+.
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            334555666666666666666666666653  233456666666666666666666666666666553 22456666666


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHH------------HHccCCHHHHHHHHHHHHhCCCCCCHH
Q 010459          182 HGYSKIGKFNEALLFLNEMKEMNLSPQ-S---DTYDGLIQA------------YGKYKMYDEIDMCLKMMKLDGCSPDHI  245 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~t~~~li~~------------~~~~g~~~~a~~~~~~m~~~g~~~~~~  245 (510)
                      ..|.+.|++++|.+.|+++.+..  |+ .   .++..+...            +.+.|++++|...|+++.+.. +.+..
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  178 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE  178 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence            66666666666666666666532  32 2   455555333            556666666666666665543 33556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH-----
Q 010459          246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL-----  320 (510)
Q Consensus       246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-----  320 (510)
                      .+..+...|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.++.+.+.. +.+...+..+     
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            66666666666666666666666665442 1245566666666666666666666666665432 1222333322     


Q ss_pred             -------HHHHHhhcchhHHHHHHHHHHhhcCCch----HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHH
Q 010459          321 -------AEVYIKNYMFSRLDDLGDDLASRIGRTE----LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANII  389 (510)
Q Consensus       321 -------i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  389 (510)
                             ...|.+.|++++|...+.......+.+.    ..|..+...+...|+.++|.+.++++.+..+. +..+|..+
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l  335 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence                   4445555555555555555444433332    23444445555555555555555554443211 34455555


Q ss_pred             HHHHHcCCChhHHHHHHHhhhh
Q 010459          390 LLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       390 i~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      ..+|.+.|++++|...|++..+
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Confidence            5555555555555555555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=1.3e-20  Score=188.08  Aligned_cols=364  Identities=10%  Similarity=-0.032  Sum_probs=297.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459          135 SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG  214 (510)
Q Consensus       135 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  214 (510)
                      .+.+...+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.+.. +..++..
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~   99 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQ   99 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence            35567889999999999999999999999998763 457899999999999999999999999999887533 6889999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHHCCCccCH
Q 010459          215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDH---ITYNLLIQE------------FACAGLLKRMEGTYKSMLTKRMHLRS  279 (510)
Q Consensus       215 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~  279 (510)
                      +...|.+.|++++|...|+++.+.. +.+.   ..|..++..            +.+.|++++|...|+++.+... .+.
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~  177 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDA  177 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence            9999999999999999999999764 2334   666666444            8999999999999999987643 377


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHH-----
Q 010459          280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLR-----  354 (510)
Q Consensus       280 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-----  354 (510)
                      .++..+..+|...|++++|.++++.+.+.. +.+..++..+...|.+.|++++|...+..+....+.+...+..+     
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            889999999999999999999999998764 45688999999999999999999999999998888888888776     


Q ss_pred             -------HHHhhhhcccccHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHHHHH
Q 010459          355 -------LLSHACLLSHRGIDSVVREMESAKVRWN----VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIVTIG  422 (510)
Q Consensus       355 -------i~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~  422 (510)
                             ...+...|+.++|.+.|+++.+.... +    ...|..+...+.+.|++++|...++++.+.  .| +...|.
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~  333 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALK  333 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence                   88899999999999999999885432 2    457888999999999999999999999864  35 578899


Q ss_pred             HHHHhhhhcCccchHHHHHHHcCCccccccccChhHHH------------HHhhccC-----chhHHHHHHhhcCCCCCC
Q 010459          423 ILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVL------------AVYGKGH-----FLRYCEEVYSSLEPYSRE  485 (510)
Q Consensus       423 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li------------~~~~~~g-----~~~~A~~~~~~m~~~g~~  485 (510)
                      .+..+|...|++++|.+.++++....+ .+...+..+.            +.|...|     +.+++.+.++++... ..
T Consensus       334 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~  411 (450)
T 2y4t_A          334 DRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WH  411 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hC
Confidence            999999999999999999999855322 1222333333            2344445     667778888753211 23


Q ss_pred             CC-----------cccHHHHHHHHHhcCCCCCCC
Q 010459          486 KK-----------RWTYQNLIDLVIKHNGKNLDG  508 (510)
Q Consensus       486 p~-----------~~~~~~li~~~~~~g~~~~a~  508 (510)
                      ||           ...|..+..+|..-|+.+++.
T Consensus       412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            33           237788999999999887764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.7e-21  Score=194.44  Aligned_cols=368  Identities=6%  Similarity=-0.093  Sum_probs=298.3

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      .+......+.+.|++++|.+.|+.+.+.   .||...|..+..+|.+.|++++|+..|+++.+.+ +.+..+|..+..+|
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            5667778889999999999999999873   3799999999999999999999999999998875 34678999999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC---------------------------------------------------------
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSP---------------------------------------------------------  207 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p---------------------------------------------------------  207 (510)
                      .+.|++++|...|+++...+...                                                         
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            99999999999999987765210                                                         


Q ss_pred             ---------------------CHHHHHHHHHHHH---ccCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHH
Q 010459          208 ---------------------QSDTYDGLIQAYG---KYKMYDEIDMCLKMMKL-----DGC--------SPDHITYNLL  250 (510)
Q Consensus       208 ---------------------~~~t~~~li~~~~---~~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l  250 (510)
                                           +...+..+...+.   +.|++++|...|+++.+     ..-        +.+..+|..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence                                 1223333333333   37999999999999887     311        2235678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcch
Q 010459          251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMF  330 (510)
Q Consensus       251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~  330 (510)
                      ...+...|++++|...|++..+...  +..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence            8899999999999999999887653  37788889999999999999999999988764 44667888899999999999


Q ss_pred             hHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          331 SRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       331 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      ++|...+.......+.+...|..+...+...|+.++|.+.|+++.+.... +..+|..+...|.+.|++++|...|+++.
T Consensus       321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999988888888999999999999999999999999998876443 56788888899999999999999999987


Q ss_pred             hCC-CCCC----HHHHHHHHHhhhh---cCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          411 TRH-VKPD----IVTIGILYDARRI---GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       411 ~~g-~~p~----~~t~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      +.. -.|+    ...+..+...+..   .|++++|.+.++++.... +.+...+..+...|.+.|++++|.+.|++..+
T Consensus       400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            531 1122    3377788888888   899999999998874332 22344566677889999999999999998887

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.2e-20  Score=188.27  Aligned_cols=358  Identities=8%  Similarity=-0.031  Sum_probs=296.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      ..+-..-..+.+.|++++|+..|+++.+..  |+..+|..+..+|.+.|++++|++.|+++.+.+. .+..+|..+..+|
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~   83 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence            456667788999999999999999999874  7999999999999999999999999999988653 3678999999999


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCC--------------------------------------------------------
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPD--------------------------------------------------------  243 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~--------------------------------------------------------  243 (510)
                      .+.|++++|...|+++.+.+. ++                                                        
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999876642 11                                                        


Q ss_pred             -----------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------ccCHHHHHH
Q 010459          244 -----------------------HITYNLLIQEFAC---AGLLKRMEGTYKSMLT-----KRM--------HLRSSTMVA  284 (510)
Q Consensus       244 -----------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~  284 (510)
                                             ...+......+..   .|++++|..+|+++.+     ...        +.+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                   2222233333333   7999999999999987     311        223567888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc
Q 010459          285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH  364 (510)
Q Consensus       285 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  364 (510)
                      +...+...|++++|.+.++.+.+...  +...+..+...|...|++++|...+.......+.+...|..+...+...|+.
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence            89999999999999999999998753  3888899999999999999999999999998888999999999999999999


Q ss_pred             ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          365 RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       365 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      ++|...|++..+.... +..++..+...|.+.|++++|..+++++.+.. ..+...+..+...+...|++++|.+.++++
T Consensus       321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999987655 67788899999999999999999999998642 224577888888899999999999999987


Q ss_pred             CCccccc-c----ccChhHHHHHhhc---cCchhHHHHHHhhcCCCCCCC-CcccHHHHHHHHHhcCCCCCC
Q 010459          445 GFLFKTV-E----INTDPLVLAVYGK---GHFLRYCEEVYSSLEPYSREK-KRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       445 ~~~~~~~-~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a  507 (510)
                      ....... .    ...+..+...|.+   .|++++|.+.+++..+.  .| +...|..+...|.+.|+++.|
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHH
Confidence            4332211 1    1256677788889   99999999999998763  33 456788899999999987755

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.85  E-value=9.9e-19  Score=178.44  Aligned_cols=369  Identities=7%  Similarity=-0.046  Sum_probs=281.8

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      ..|......+.+.|++++|.+.|+.+.+  ..+.+...|..+..+|.+.|++++|++.|++..+.+ +.+..+|..+...
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            4667788889999999999999999885  234578889999999999999999999999998775 3468889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCC------------------------------------CCCCHH-----------------
Q 010459          184 YSKIGKFNEALLFLNEMKEMN------------------------------------LSPQSD-----------------  210 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g------------------------------------~~p~~~-----------------  210 (510)
                      +.+.|++++|++.|+.+....                                    ..|+..                 
T Consensus       103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            999999999999986442111                                    011111                 


Q ss_pred             -------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHH
Q 010459          211 -------------TYDGLIQAYGK--------YKMYDEIDMCLKMMKLDGCSPD-------HITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       211 -------------t~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~  262 (510)
                                   ....+...+..        .|++++|..+|+++.+.. +.+       ..+|..+...+...|++++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                         11122222221        147888999999888653 222       2346666678888999999


Q ss_pred             HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459          263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS  342 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  342 (510)
                      |.+.|++..+.  .|+..++..+...+...|++++|.+.+..+.+.. +.+..++..+...|...|++++|...+.....
T Consensus       262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  338 (537)
T 3fp2_A          262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS  338 (537)
T ss_dssp             HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999876  4557788888889999999999999999988765 44678889999999999999999999999988


Q ss_pred             hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC-----CCCC
Q 010459          343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH-----VKPD  417 (510)
Q Consensus       343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~  417 (510)
                      ..+.+...|..+...+...|+.++|.+.|++..+.... +...+..+...|.+.|++++|...|+++.+..     ....
T Consensus       339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  417 (537)
T 3fp2_A          339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG  417 (537)
T ss_dssp             HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence            88888899999999999999999999999998887543 56788888999999999999999999987532     1111


Q ss_pred             HHHHHHHHHhhhhc----------CccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          418 IVTIGILYDARRIG----------FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       418 ~~t~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      ...+......+...          |++++|++.+++..... +.+...+..+...|.+.|++++|.+.|++..+
T Consensus       418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            12233333455555          89999999999874432 22345566778889999999999999998877

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=5e-17  Score=156.37  Aligned_cols=302  Identities=11%  Similarity=-0.035  Sum_probs=207.2

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH  182 (510)
Q Consensus       103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  182 (510)
                      +..+..+...+...|++++|.+.|+.+.+  ..+.+...+..+...|...|++++|...|++..+.. +.+...|..+..
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            34667777888889999999999988875  234467788888888999999999999999888763 236788888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459          183 GYSKIGKFNEALLFLNEMKEMNLS--PQSDTYDGL------------IQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYN  248 (510)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  248 (510)
                      .+.+.|++++|.+.|++..+....  .+...+..+            ...+...|++++|...|+++.+.. +.+...+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            999999999999999988775320  134444444            467778888888888888887654 45677788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH----------
Q 010459          249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVR----------  318 (510)
Q Consensus       249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----------  318 (510)
                      .+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+...+.          
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~  236 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK  236 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence            88888888888888888888887664 3366778888888888888888888888887654 22223222          


Q ss_pred             --HHHHHHHhhcchhHHHHHHHHHHhhcCCchHH----HHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010459          319 --KLAEVYIKNYMFSRLDDLGDDLASRIGRTELV----WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLA  392 (510)
Q Consensus       319 --~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  392 (510)
                        .+...+.+.|++++|...+.......+.+...    +..+...+...|+.++|.+.+++..+..+. +..+|..+...
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~  315 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEA  315 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence              12444555666666666655555544444322    223444555555566666666555554222 44555555555


Q ss_pred             HHcCCChhHHHHHHHhhhh
Q 010459          393 YLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       393 ~~~~g~~~~A~~~~~~m~~  411 (510)
                      |.+.|++++|...|++..+
T Consensus       316 ~~~~g~~~~A~~~~~~a~~  334 (359)
T 3ieg_A          316 YLIEEMYDEAIQDYEAAQE  334 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHh
Confidence            5566666666666655554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=194.83  Aligned_cols=151  Identities=19%  Similarity=0.276  Sum_probs=119.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEG---FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDG  214 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  214 (510)
                      -..+||+||++||+.|++++|.++|++|.+   .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            446899999999999999999999988764   47889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC------HHHHHHHHH
Q 010459          215 LIQAYGKYKM-YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR------SSTMVAILD  287 (510)
Q Consensus       215 li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~  287 (510)
                      ||+++++.|+ .++|.++|++|.+.|+.||.++|+.+++++.+.+    +++..+++ ..+..|+      ..|...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            9999999987 4788899999999999999999999887766553    33333333 2334433      344445556


Q ss_pred             HHHhcC
Q 010459          288 AYMNFG  293 (510)
Q Consensus       288 ~~~~~g  293 (510)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=1.7e-20  Score=193.19  Aligned_cols=151  Identities=16%  Similarity=0.185  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKE---MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL  249 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  249 (510)
                      -..|||+||++|++.|++++|.++|++|.+   .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||++|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            357999999999999999999999988864   58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------HHHHHHHHH
Q 010459          250 LIQEFACAGL-LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK------EDLVRKLAE  322 (510)
Q Consensus       250 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~  322 (510)
                      +|.++++.|+ .++|.++|++|.+.|+.||..||+++++++.+.+-+    +..+++ +.++.|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            9999999998 478999999999999999999999999877664332    222222 3345544      445566777


Q ss_pred             HHHhhc
Q 010459          323 VYIKNY  328 (510)
Q Consensus       323 ~~~~~~  328 (510)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            777654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.81  E-value=1.7e-16  Score=152.59  Aligned_cols=211  Identities=10%  Similarity=-0.020  Sum_probs=163.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      |+..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.... +..++..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence            45567778888999999999999999988764 346888999999999999999999999998875422 6788899999


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 010459          218 AYGKYKMYDEIDMCLKMMKLDGCS--PDHITYNLL------------IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMV  283 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  283 (510)
                      .|.+.|++++|...|++..+....  .+...+..+            ...+...|++++|.+.|+++.+... .+...+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  158 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE  158 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence            999999999999999999876310  244445444            4677888888888888888876542 3567788


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459          284 AILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC  352 (510)
Q Consensus       284 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  352 (510)
                      .+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...+.......+.+...|.
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  226 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA  226 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH
Confidence            88888888888888888888887654 446677777888888888888887777776666665555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.81  E-value=4.5e-18  Score=173.57  Aligned_cols=360  Identities=11%  Similarity=0.023  Sum_probs=281.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA  218 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  218 (510)
                      ...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|++.|++..+.+. .+..++..+...
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence            3567788889999999999999999999875 34789999999999999999999999999988653 368899999999


Q ss_pred             HHccCCHHHHHHHHHHHHhCCC------------------------------------CCCHH-----------------
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGC------------------------------------SPDHI-----------------  245 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~------------------------------------~~~~~-----------------  245 (510)
                      |.+.|++++|...|+.+....-                                    .|+..                 
T Consensus       103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            9999999999999964421110                                    01111                 


Q ss_pred             -------------HHHHHHHHHH--------HcCCHHHHHHHHHHHHHCCCccC-------HHHHHHHHHHHHhcCChhH
Q 010459          246 -------------TYNLLIQEFA--------CAGLLKRMEGTYKSMLTKRMHLR-------SSTMVAILDAYMNFGMLDK  297 (510)
Q Consensus       246 -------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~g~~~~  297 (510)
                                   .+..+...+.        ..|++++|..+|+++.+.... +       ..++..+...+...|++++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                         1111111111        124788999999998865322 2       2356677788889999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC
Q 010459          298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA  377 (510)
Q Consensus       298 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  377 (510)
                      |.+.+....+..  |+...+..+...|...|++++|...+.......+.+..+|..+...+...|+.++|.+.|++..+.
T Consensus       262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  339 (537)
T 3fp2_A          262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL  339 (537)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            999999999864  558888999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccC--
Q 010459          378 KVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINT--  455 (510)
Q Consensus       378 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--  455 (510)
                      ... +..+|..+...|.+.|++++|..+|+++.+.. ..+...+..+...+...|++++|++.++++...........  
T Consensus       340 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  417 (537)
T 3fp2_A          340 NPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG  417 (537)
T ss_dssp             CTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred             CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence            544 56788899999999999999999999998642 22456788888889999999999999998744322111111  


Q ss_pred             ---hhHHHHHhhcc----------CchhHHHHHHhhcCCCCCCC-CcccHHHHHHHHHhcCCCCCC
Q 010459          456 ---DPLVLAVYGKG----------HFLRYCEEVYSSLEPYSREK-KRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       456 ---~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a  507 (510)
                         +......|.+.          |++++|.+.|++..+.  .| +...|..+...|.+.|+++.|
T Consensus       418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHH
Confidence               11223456666          9999999999998873  33 456788999999999987755

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=6.4e-17  Score=153.82  Aligned_cols=292  Identities=11%  Similarity=-0.004  Sum_probs=177.8

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII  181 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  181 (510)
                      ++..+......+...|++++|.++|+.+.+.  .+.+...+..++..+.+.|++++|...++++.+.. +.+...|..+.
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            4445556666777777777777777777642  23334455556667777777777777777776653 23566777777


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          182 HGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       182 ~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      ..+...| ++++|.+.|++..+.... +..+|..+...+...|++++|...|++..+.. +.+...+..+...|...|++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence            7777777 777777777777665422 45667777777777777777777777776553 23455666677777777777


Q ss_pred             HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459          261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL  340 (510)
Q Consensus       261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  340 (510)
                      ++|.+.|++..+... .+...+..+...+...|++++|.+.++...+..-....                          
T Consensus       176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------  228 (330)
T 3hym_B          176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--------------------------  228 (330)
T ss_dssp             HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC--------------------------
T ss_pred             HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc--------------------------
Confidence            777777777765532 24566777777777777777777777766542100000                          


Q ss_pred             HhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCC-CHH
Q 010459          341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKP-DIV  419 (510)
Q Consensus       341 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~  419 (510)
                      ....+.....|..+...+...|+.++|.+.|++..+.... +...|..+...|.+.|++++|.+.|++..+.  .| +..
T Consensus       229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~  305 (330)
T 3hym_B          229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTF  305 (330)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHH
T ss_pred             cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchH
Confidence            0000222334444444455555555555555555554332 4556666666666667777777776666643  34 334


Q ss_pred             HHHHHHHhh
Q 010459          420 TIGILYDAR  428 (510)
Q Consensus       420 t~~~li~~~  428 (510)
                      .+..+..++
T Consensus       306 ~~~~l~~~~  314 (330)
T 3hym_B          306 SVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.3e-16  Score=151.58  Aligned_cols=296  Identities=9%  Similarity=-0.078  Sum_probs=217.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459          134 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD  213 (510)
Q Consensus       134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  213 (510)
                      +.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+.+.|++++|..+++++.+... .+..+|.
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~   94 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF   94 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence            345566677778888888899999999999888764 33556677788888888999999999998877543 2567888


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459          214 GLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF  292 (510)
Q Consensus       214 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  292 (510)
                      .+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.... +...+..+...+...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence            8888888888 8899999998888764 346777888888888899999999998888766432 345666678888888


Q ss_pred             CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHH
Q 010459          293 GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVR  372 (510)
Q Consensus       293 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  372 (510)
                      |++++|.+.++...+.. +.+...+..+...|.+.|++++|...                                  |+
T Consensus       173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~----------------------------------~~  217 (330)
T 3hym_B          173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW----------------------------------FL  217 (330)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH----------------------------------HH
T ss_pred             hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH----------------------------------HH
Confidence            88888888888887654 33455666666666666666555555                                  44


Q ss_pred             HHHHCC--------CCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          373 EMESAK--------VRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       373 ~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      +..+..        .+.+..+|..+...|.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.+++.
T Consensus       218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (330)
T 3hym_B          218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA  296 (330)
T ss_dssp             HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            433321        13346789999999999999999999999998642 225677888888999999999999999998


Q ss_pred             CCccccccccChhHHHHHh-hccCchh
Q 010459          445 GFLFKTVEINTDPLVLAVY-GKGHFLR  470 (510)
Q Consensus       445 ~~~~~~~~~~~~~~li~~~-~~~g~~~  470 (510)
                      ....+ .+...+..+...+ ...|+.+
T Consensus       297 l~~~p-~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          297 LGLRR-DDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred             HccCC-CchHHHHHHHHHHHHHhCchh
Confidence            55432 2334455555556 4555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=4.3e-17  Score=157.78  Aligned_cols=289  Identities=11%  Similarity=-0.031  Sum_probs=175.3

Q ss_pred             hcCCCCcHHH-HHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010459          115 NSSRSRQIPQ-VFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN  191 (510)
Q Consensus       115 ~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  191 (510)
                      ..|++++|.+ .++.........|  +...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            4467777776 6664332111112  34456677778888888888888888887764 346777888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHH
Q 010459          192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL---------------LIQEFAC  256 (510)
Q Consensus       192 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~  256 (510)
                      +|++.|+++.+... .+..++..+...|.+.|++++|...|+++.+... .+...+..               .+..+..
T Consensus       116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            88888888876542 2677788888888888888888888888776542 22222221               1333346


Q ss_pred             cCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHH
Q 010459          257 AGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDD  335 (510)
Q Consensus       257 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  335 (510)
                      .|++++|...|+++.+.... ++..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|..
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            77777777777777654322 145667777777777777777777777766543 3345566666666666666666666


Q ss_pred             HHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc----------CHHHHHHHHHHHHcCCChhHHHHH
Q 010459          336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW----------NVTTANIILLAYLKMKDFKHLRVL  405 (510)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----------~~~~~~~li~~~~~~g~~~~A~~~  405 (510)
                      .+.......+.+..+|..+...+...|+.++|.+.|++..+.....          ...+|..+..+|.+.|+.++|..+
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  352 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  352 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence            6655555555555555555555555555555555555554432110          144555555555555555555555


Q ss_pred             HH
Q 010459          406 LS  407 (510)
Q Consensus       406 ~~  407 (510)
                      ++
T Consensus       353 ~~  354 (368)
T 1fch_A          353 DA  354 (368)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.76  E-value=6.9e-17  Score=156.33  Aligned_cols=289  Identities=8%  Similarity=-0.034  Sum_probs=195.1

Q ss_pred             HhcCCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010459          150 CEEGLMEEAVR-AFQEMEGFAL---KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY  225 (510)
Q Consensus       150 ~~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  225 (510)
                      .-.|++++|.+ .|++..+...   ..+...|..+...+.+.|++++|...|+++.+... .+..++..+...|.+.|++
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence            34578888888 7776554321   11356688899999999999999999999988753 3778899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHH---------------HHHHHH
Q 010459          226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVA---------------ILDAYM  290 (510)
Q Consensus       226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------ll~~~~  290 (510)
                      ++|...|+++.+.. +.+..+|..+...|...|++++|.+.|+++...... +...+..               .+..+.
T Consensus       115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            99999999988765 457889999999999999999999999999876432 1112211               233334


Q ss_pred             hcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHH
Q 010459          291 NFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS  369 (510)
Q Consensus       291 ~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  369 (510)
                      ..|++++|.+.+..+.+.... ++..++..+...|.+.|++++|...+.......+.+..+|..+...+...|+.++|.+
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            777888888888877765421 1466777777777777777777777777666666666677777777777777777777


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCC---CC-------CHHHHHHHHHhhhhcCccchHHH
Q 010459          370 VVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHV---KP-------DIVTIGILYDARRIGFDGTGALE  439 (510)
Q Consensus       370 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-------~~~t~~~li~~~~~~~~~~~a~~  439 (510)
                      .|++..+..+. +..++..+...|.+.|++++|...|++..+..-   .|       ...+|..+..++...|+.++|..
T Consensus       273 ~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          273 AYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            77776665332 456666666777777777777777766654210   00       13455555555656666666655


Q ss_pred             HHH
Q 010459          440 MWK  442 (510)
Q Consensus       440 ~~~  442 (510)
                      +++
T Consensus       352 ~~~  354 (368)
T 1fch_A          352 ADA  354 (368)
T ss_dssp             HHT
T ss_pred             hHH
Confidence            544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=3.9e-17  Score=156.41  Aligned_cols=279  Identities=10%  Similarity=0.071  Sum_probs=127.3

Q ss_pred             cccccCCCcccccc---chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcH
Q 010459           46 SCCCLSSAPSLDYH---STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQI  122 (510)
Q Consensus        46 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a  122 (510)
                      ++|++.+|... +.   .-..|..+..++.+.+++.+++..|.+             .+|+.+|..+++.+...|++++|
T Consensus        15 ~~~~ld~A~~f-ae~~~~~~vWs~La~A~l~~g~~~eAIdsfik-------------a~D~~~y~~V~~~ae~~g~~EeA   80 (449)
T 1b89_A           15 HIGNLDRAYEF-AERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK-------------ADDPSSYMEVVQAANTSGNWEEL   80 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHH-HHhCCChHHHHHHHHHHHHcCCHHHHHHHHHc-------------CCCHHHHHHHHHHHHhCCCHHHH
Confidence            55556666544 32   224688999999999999999988852             25677888999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459          123 PQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE  202 (510)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (510)
                      .+.++..++   ..+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|++++|...|..+  
T Consensus        81 i~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           81 VKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred             HHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            997776653   25567888999999999999999888874       477789999999999999999999999876  


Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 010459          203 MNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM  282 (510)
Q Consensus       203 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  282 (510)
                             ..|..|..++.+.|++++|.+.+.++      .++.+|..++.+|+..|+++.|......+.   +.|+  -.
T Consensus       149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l  210 (449)
T 1b89_A          149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL  210 (449)
T ss_dssp             -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HH
T ss_pred             -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hH
Confidence                   37889999999999999999999988      278899999999999999999965544322   3333  35


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh--cchhHHHHHHHHHHhhcC-----CchHHHHHHH
Q 010459          283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN--YMFSRLDDLGDDLASRIG-----RTELVWCLRL  355 (510)
Q Consensus       283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~li  355 (510)
                      ..++..|.+.|.+++|..+++...... +-....|+-|--+|++-  +.+.+..+.+..-...++     .....|..+.
T Consensus       211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~  289 (449)
T 1b89_A          211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV  289 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            568888999999999999998887554 44566777777777664  334444444332223333     4567788888


Q ss_pred             HHhhhhcccccHHH
Q 010459          356 LSHACLLSHRGIDS  369 (510)
Q Consensus       356 ~~~~~~~~~~~a~~  369 (510)
                      ..|...++++.|..
T Consensus       290 ~ly~~~~e~d~A~~  303 (449)
T 1b89_A          290 FLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHhhchHHHHHH
Confidence            88888888887754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=4.6e-17  Score=155.94  Aligned_cols=268  Identities=10%  Similarity=0.055  Sum_probs=139.7

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      +++.+|..+..++.+.|++++|.+.|..       .+|...|..++..+...|++++|+..++...+.  .+++.+.+.+
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~L  100 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL  100 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHH
Confidence            3345899999999999999999999963       367889999999999999999999987766654  5668889999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      +.+|.+.|+++++.++++       .|+..+|+.+.+.|...|.+++|...|..+         ..|..+++++.+.|++
T Consensus       101 i~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~y  164 (449)
T 1b89_A          101 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEY  164 (449)
T ss_dssp             --------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCH
T ss_pred             HHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccH
Confidence            999999999999998885       378889999999999999999999999987         3799999999999999


Q ss_pred             HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459          261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL  340 (510)
Q Consensus       261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  340 (510)
                      ++|.+.+.++      .++.+|..++.+|...|+++.|......     +...+.-...++..|.+.|.++++..+++..
T Consensus       165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999988      2789999999999999999999554433     3344555667999999999999999999999


Q ss_pred             HhhcCCchHHHHHHHHHhhhh--cccccHHHHHHHHHHCCCCc------CHHHHHHHHHHHHcCCChhHHHHHH
Q 010459          341 ASRIGRTELVWCLRLLSHACL--LSHRGIDSVVREMESAKVRW------NVTTANIILLAYLKMKDFKHLRVLL  406 (510)
Q Consensus       341 ~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~  406 (510)
                      .+..+.....|+-+-..|++-  ++..+.++.|.  .+..++|      +...|.-+.-.|.+.++++.|....
T Consensus       234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          234 LGLERAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            888888899999988777765  33344444443  1223333      4567888999999999999887743

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=3.8e-16  Score=151.13  Aligned_cols=262  Identities=10%  Similarity=-0.048  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      +..+...+.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|++.|++..+... .+..+|..+...|.+
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence            4444444444455555555554444332 12344444444444445555555555444444321 134444444444444


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHH
Q 010459          222 YKMYDEIDMCLKMMKLDGCSPD-----------HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAY  289 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~  289 (510)
                      .|++++|...|+++.+..  |+           ...+..+...+.+.|++++|.+.|+++.+.... ++..++..+...+
T Consensus       146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            444444444444444321  11           111222234444444444444444444433211 1334444444444


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHH
Q 010459          290 MNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDS  369 (510)
Q Consensus       290 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  369 (510)
                      ...|++++|.+.+++..+.. +.+..++..+...|.+.|++++|...+.......+.+..+|..+...|...|+.++|.+
T Consensus       224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            44444444444444444332 22333444444444444444444444333333333333334444444444444444444


Q ss_pred             HHHHHHHCCCC-----------cCHHHHHHHHHHHHcCCChhHHHHHHHh
Q 010459          370 VVREMESAKVR-----------WNVTTANIILLAYLKMKDFKHLRVLLSE  408 (510)
Q Consensus       370 ~~~~m~~~g~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~  408 (510)
                      .|++..+....           .+..+|..+..++...|+.+.+.....+
T Consensus       303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            44444332110           0234556666666666666665555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=2.4e-16  Score=152.47  Aligned_cols=236  Identities=8%  Similarity=-0.015  Sum_probs=171.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      +...|..+...+.+.|++++|.+.|+++.+... .+..+|..+...|.+.|++++|...|++..+.. +.+..+|..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            456688999999999999999999999988653 378899999999999999999999999988764 456889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCc-c--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 010459          253 EFACAGLLKRMEGTYKSMLTKRMH-L--------RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-LKEDLVRKLAE  322 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~g~~-p--------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~  322 (510)
                      .|...|++++|.+.|+++.+.... +        ....+..+...+...|++++|.+.++++.+..-. ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            999999999999999998865311 0        1123334567788888888888888888875422 25677777888


Q ss_pred             HHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHH
Q 010459          323 VYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHL  402 (510)
Q Consensus       323 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  402 (510)
                      .|.+.|++++|...+.......+.+..+|+.+...+...|+.++|.+.|++..+..+. +..+|..+...|.+.|++++|
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence            8888888877777777776666666666777777777777777777777666665332 456666666666667777777


Q ss_pred             HHHHHhhhh
Q 010459          403 RVLLSELPT  411 (510)
Q Consensus       403 ~~~~~~m~~  411 (510)
                      ...|++..+
T Consensus       301 ~~~~~~al~  309 (365)
T 4eqf_A          301 VSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.73  E-value=1.1e-15  Score=145.01  Aligned_cols=266  Identities=9%  Similarity=-0.086  Sum_probs=139.0

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      ..+......+...|++++|.++|+.+.+  ..+.+...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            3455566666667777777777766654  223355566666666666777777777776666543 2355666666666


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL--------------IQ-AYGKYKMYDEIDMCLKMMKLDGCSPDHITYN  248 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  248 (510)
                      |...|++++|.+.|++..+.... +...+..+              .. .+...|++++|...++++.+.. +.+...+.
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  176 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA  176 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence            66666666666666666654321 11222222              11 2444455555555555554432 22444555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Q 010459          249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNY  328 (510)
Q Consensus       249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  328 (510)
                      .+...|...|++++|.+.+++..+... .+..++..+...+...|++++|.+.++.+.+.                    
T Consensus       177 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------------  235 (327)
T 3cv0_A          177 SLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI--------------------  235 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------
Confidence            555555555555555555555444321 13344444445555555555555555444433                    


Q ss_pred             chhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHcCC
Q 010459          329 MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRW-----------NVTTANIILLAYLKMK  397 (510)
Q Consensus       329 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g  397 (510)
                                     .+.+..+|..+...+...|+.++|.+.|++..+....+           +..+|..+..++.+.|
T Consensus       236 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          236 ---------------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN  300 (327)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred             ---------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence                           22233333333344444444444444455444432221           3556666677777777


Q ss_pred             ChhHHHHHHHhhh
Q 010459          398 DFKHLRVLLSELP  410 (510)
Q Consensus       398 ~~~~A~~~~~~m~  410 (510)
                      +.++|..++++..
T Consensus       301 ~~~~A~~~~~~~l  313 (327)
T 3cv0_A          301 RPDLVELTYAQNV  313 (327)
T ss_dssp             CHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHH
Confidence            7777777666543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=1e-14  Score=148.67  Aligned_cols=394  Identities=5%  Similarity=-0.072  Sum_probs=276.2

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSII  181 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  181 (510)
                      +...|..++. +.+.|++++|+.+|+.+.  ...+-+...|..++..+.+.|++++|..+|++..+.  .|+...|...+
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al--~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLV--AQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence            5568888888 477899999999999997  456667889999999999999999999999999977  57888888887


Q ss_pred             HHH-HhcCChHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCHH
Q 010459          182 HGY-SKIGKFNEALL----FLNEMKE-MNLSP-QSDTYDGLIQAYGK---------YKMYDEIDMCLKMMKLDGCSPDHI  245 (510)
Q Consensus       182 ~~~-~~~g~~~~a~~----~~~~m~~-~g~~p-~~~t~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~  245 (510)
                      ... ...|+.++|.+    +|++... .|..| +...|...+....+         .|+++.|.++|++..+........
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            533 45677776665    7776654 35544 56778887776654         688999999999998731111134


Q ss_pred             HHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HCC---CccC--------HHHHHHHHHHHHhc---
Q 010459          246 TYNLLIQEF-------------ACAGLLKRMEGTYKSML------TKR---MHLR--------SSTMVAILDAYMNF---  292 (510)
Q Consensus       246 ~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~t~~~ll~~~~~~---  292 (510)
                      .|.......             .+.++++.|..++.++.      +..   ++|+        ...|...+......   
T Consensus       167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~  246 (530)
T 2ooe_A          167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR  246 (530)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence            454333211             12356777777776632      111   3443        23455544333221   


Q ss_pred             -CCh----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------hcchh-------HHHHHHHHHHh-hcCCchHHHH
Q 010459          293 -GML----DKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK-------NYMFS-------RLDDLGDDLAS-RIGRTELVWC  352 (510)
Q Consensus       293 -g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~-~~~~~~~~~~  352 (510)
                       ++.    .++..+|++.++.. +.+...+..+...+.+       .|+++       +|..++..... ..+.+...|.
T Consensus       247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~  325 (530)
T 2ooe_A          247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF  325 (530)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence             222    36777888887653 4467778777777775       57776       78888888876 5677888999


Q ss_pred             HHHHHhhhhcccccHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHh-hh
Q 010459          353 LRLLSHACLLSHRGIDSVVREMESAKVRWN-VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDA-RR  429 (510)
Q Consensus       353 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~-~~  429 (510)
                      .++..+...|+.++|.++|++..+.... + ...|...+..+.+.|+.++|.++|++..+.  .|+ ...|...... +.
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~  402 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYY  402 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHH
Confidence            9999999999999999999999885332 3 357888888888899999999999998864  232 2223222222 33


Q ss_pred             hcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCC-CCCC--cccHHHHHHHHHhcCCCC
Q 010459          430 IGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYS-REKK--RWTYQNLIDLVIKHNGKN  505 (510)
Q Consensus       430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~  505 (510)
                      ..|+.++|.++|++..... +.+...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...+.....+|+.+
T Consensus       403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~  480 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  480 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred             HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            5788999999998774332 2344567777788888999999999998887632 2332  236777788777788654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=2.2e-15  Score=142.99  Aligned_cols=230  Identities=10%  Similarity=-0.013  Sum_probs=185.0

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      .+...+..+...+...|++++|.+.++.+.+.  .+.+..++..+...|.+.|++++|.+.|++..+.... +...+..+
T Consensus        53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~  129 (327)
T 3cv0_A           53 EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVN  129 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence            46678888999999999999999999998863  3457788999999999999999999999999977422 33334333


Q ss_pred             --------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 010459          181 --------------IH-GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHI  245 (510)
Q Consensus       181 --------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  245 (510)
                                    .. .+...|++++|.+.++++.+.... +..++..+...|.+.|++++|...+++..+.. +.+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  207 (327)
T 3cv0_A          130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQ  207 (327)
T ss_dssp             ----------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHH
Confidence                          22 377888999999999999886533 78899999999999999999999999998764 45688


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------CH
Q 010459          246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL-----------KE  314 (510)
Q Consensus       246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~  314 (510)
                      +|..+...+...|++++|.+.|++..+... .+..++..+...+...|++++|.+.++...+.....           +.
T Consensus       208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  286 (327)
T 3cv0_A          208 LWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR  286 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence            999999999999999999999999887642 367889999999999999999999999988653221           35


Q ss_pred             HHHHHHHHHHHhhcchhHHHHH
Q 010459          315 DLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       315 ~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      ..+..+..+|.+.|++++|...
T Consensus       287 ~~~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          287 SMWDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHH
Confidence            5666666666666666666555

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=2.2e-15  Score=140.73  Aligned_cols=248  Identities=7%  Similarity=-0.061  Sum_probs=140.7

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF  190 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  190 (510)
                      ....|++..|+...+.+   ....|+.  ...-.+..+|...|+++.|+..++..    -.|+..++..+...+...++.
T Consensus         9 ~~~~g~y~~ai~~~~~~---~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRV---KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHTTCHHHHHHHHHHS---CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHhc---ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence            34456666666665543   2233332  23344566777777777776655432    245566666666777777777


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459          191 NEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS  269 (510)
Q Consensus       191 ~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  269 (510)
                      ++|++.++++...+..|+ ...+..+...|.+.|++++|.+.+++      +.+...+..+...|.+.|++++|.+.|++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            777777777766654443 33444555666677777777777665      34566666666777777777777777777


Q ss_pred             HHHCCCccCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q 010459          270 MLTKRMHLRSSTM---VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR  346 (510)
Q Consensus       270 m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  346 (510)
                      +.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|...++......+.
T Consensus       156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            66553  332111   112233333466666777776666552 445556666666666666666655555555444444


Q ss_pred             chHHHHHHHHHhhhhccccc-HHHHHHHHHH
Q 010459          347 TELVWCLRLLSHACLLSHRG-IDSVVREMES  376 (510)
Q Consensus       347 ~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~  376 (510)
                      +..+|..++..+...|+.++ +.++++++.+
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            44444444444444444432 3344444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.70  E-value=8e-13  Score=133.17  Aligned_cols=352  Identities=8%  Similarity=-0.097  Sum_probs=263.4

Q ss_pred             ChhhHHHHHHHHHh----cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC
Q 010459          102 TKDHFWAVIRFLKN----SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE----EGLMEEAVRAFQEMEGFALKPS  173 (510)
Q Consensus       102 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~  173 (510)
                      ++..+..+-..|..    .+++++|.+.|+...+ .   -+...+..|-..|..    .+++++|.+.|++..+.|   +
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-Q---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            34455566666666    7888888888888775 3   356677778888888    888999999998888754   6


Q ss_pred             HHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHH
Q 010459          174 LEIYNSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHI  245 (510)
Q Consensus       174 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~  245 (510)
                      ...+..|-..|..    .+++++|++.|++..+.|   +...+..|-..|..    .++.++|...|++..+.|   +..
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~  184 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW  184 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            6777778888887    788899999998888776   56777778888876    778899999998888754   677


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHH
Q 010459          246 TYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLV  317 (510)
Q Consensus       246 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~  317 (510)
                      .+..+-..|..    .++.++|.+.|++..+.|   +...+..+...|..    .++.++|.++|+...+.|   +...+
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            77788888887    788999999998888765   55677777777775    788889999988887765   45566


Q ss_pred             HHHHHHHHh----hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhh-----cccccHHHHHHHHHHCCCCcCHHHHHH
Q 010459          318 RKLAEVYIK----NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL-----LSHRGIDSVVREMESAKVRWNVTTANI  388 (510)
Q Consensus       318 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~  388 (510)
                      ..|-.+|..    .+++++|...++.....  .+...+..+...|...     ++.++|.+.|++..+.|   +...+..
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  333 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN  333 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence            667777777    77888888887776544  3455666676666665     78888888888888764   4456666


Q ss_pred             HHHHHHcCC---ChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhh----cCccchHHHHHHHcCCccccccccChhHHHH
Q 010459          389 ILLAYLKMK---DFKHLRVLLSELPTRHVKPDIVTIGILYDARRI----GFDGTGALEMWKRIGFLFKTVEINTDPLVLA  461 (510)
Q Consensus       389 li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  461 (510)
                      +-..|.+.|   +.++|.+.|++..+.|   +...+..+-..+..    .++.++|++.+++....+   +...+..+..
T Consensus       334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~  407 (490)
T 2xm6_A          334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE  407 (490)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            777777666   7788888888888764   55566666666665    678888988888874432   2334455556


Q ss_pred             Hhhc----cCchhHHHHHHhhcCCCC
Q 010459          462 VYGK----GHFLRYCEEVYSSLEPYS  483 (510)
Q Consensus       462 ~~~~----~g~~~~A~~~~~~m~~~g  483 (510)
                      .|.+    .++.++|.+.|++..+.+
T Consensus       408 ~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          408 IYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            6665    788889998888887754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=8.3e-15  Score=136.75  Aligned_cols=250  Identities=11%  Similarity=0.034  Sum_probs=185.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459          147 GMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM  224 (510)
Q Consensus       147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  224 (510)
                      .-..-.|++..|+..++.....  .|+  ....-.+.++|...|+++.|+..++.    .-.|+..++..+...+.+.++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence            3445679999999998876543  333  24556778999999999999987754    245678889999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459          225 YDEIDMCLKMMKLDGCSP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK  303 (510)
Q Consensus       225 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  303 (510)
                      .++|.+.++++...+..| +...+..+-..+.+.|++++|++.+++      +.+...+..+...+.+.|++++|.+.++
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999998876545 556666777899999999999999987      3577889999999999999999999999


Q ss_pred             HHHhcCCCCCHHHH---HHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCC
Q 010459          304 RLLNSRTPLKEDLV---RKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR  380 (510)
Q Consensus       304 ~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  380 (510)
                      .+.+..  |+....   .+++..+...|++++|..++..+....+.+...|+.+...+...|++++|.+.|++..+..+.
T Consensus       155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            998864  443211   233344445577777777777766666666666777777777777777777777766665443


Q ss_pred             cCHHHHHHHHHHHHcCCChhH-HHHHHHhhhh
Q 010459          381 WNVTTANIILLAYLKMKDFKH-LRVLLSELPT  411 (510)
Q Consensus       381 p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~  411 (510)
                       +..++..++..+...|+.++ +.++++++.+
T Consensus       233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence             55666666666666666654 4566666654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=3.5e-13  Score=137.21  Aligned_cols=406  Identities=9%  Similarity=-0.028  Sum_probs=288.9

Q ss_pred             chhhhhHHHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH
Q 010459           60 STKHTTLLVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE  139 (510)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  139 (510)
                      +...|..++. +.+.+....+...++       ..+.. .+-+...|...+..+.+.|++++|.++|++...   ..|+.
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e-------~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~   79 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYE-------RLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHI   79 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHH-------HHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHH-------HHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCh
Confidence            3456777776 466778888888777       44332 223556788999999999999999999998864   34788


Q ss_pred             HHHHHHHHHH-HhcCCHHHHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHC
Q 010459          140 FNSQKIIGML-CEEGLMEEAVR----AFQEMEG-FALK-PSLEIYNSIIHGYSK---------IGKFNEALLFLNEMKEM  203 (510)
Q Consensus       140 ~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~  203 (510)
                      ..|..++... ...|+++.|.+    +|+.... .|.. ++...|...+....+         .|++++|..+|++..+.
T Consensus        80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~  159 (530)
T 2ooe_A           80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN  159 (530)
T ss_dssp             HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence            8888877533 45677777665    7776654 2443 357788888887655         68899999999999873


Q ss_pred             CCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHH
Q 010459          204 NLSPQSDTYDGLIQAY-------------GKYKMYDEIDMCLKMMK------LDG---CSPD--------HITYNLLIQE  253 (510)
Q Consensus       204 g~~p~~~t~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~li~~  253 (510)
                      ...+....|.......             .+.++++.|..++.++.      +..   ++|+        ...|...+..
T Consensus       160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~  239 (530)
T 2ooe_A          160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW  239 (530)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence            2111234444333211             13456777887777632      111   2444        3567766654


Q ss_pred             HHHc----CCH----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCC
Q 010459          254 FACA----GLL----KRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-------FGMLD-------KMEKFYKRLLNSRTP  311 (510)
Q Consensus       254 ~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~  311 (510)
                      ....    ++.    +.|..+|++..... +-+...|......+.+       .|+++       +|.+++++..+.-.+
T Consensus       240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p  318 (530)
T 2ooe_A          240 EKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK  318 (530)
T ss_dssp             HHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred             HHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence            3332    232    47788899888752 2256778888777775       79987       899999998863334


Q ss_pred             CCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch-HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459          312 LKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE-LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL  390 (510)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  390 (510)
                      .+...+..+...+.+.|++++|..++.......+.+. ..|...+..+.+.|+.++|.++|++..+.... +...|....
T Consensus       319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a  397 (530)
T 2ooe_A          319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAA  397 (530)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHH
Confidence            4688899999999999999999999999988777764 68999999999999999999999999886432 233333222


Q ss_pred             H-HHHcCCChhHHHHHHHhhhhCCCCC-CHHHHHHHHHhhhhcCccchHHHHHHHcCCccc-ccc--ccChhHHHHHhhc
Q 010459          391 L-AYLKMKDFKHLRVLLSELPTRHVKP-DIVTIGILYDARRIGFDGTGALEMWKRIGFLFK-TVE--INTDPLVLAVYGK  465 (510)
Q Consensus       391 ~-~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~  465 (510)
                      . .+...|+.++|..+|+...+.  .| +...|..++..+.+.|+.++|..++++...... .|.  ...|...+....+
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            2 234689999999999998864  35 467888888888999999999999999844321 111  2245555666777


Q ss_pred             cCchhHHHHHHhhcCC
Q 010459          466 GHFLRYCEEVYSSLEP  481 (510)
Q Consensus       466 ~g~~~~A~~~~~~m~~  481 (510)
                      .|+.+.+.++++++.+
T Consensus       476 ~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          476 IGDLASILKVEKRRFT  491 (530)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            8999999999988876

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.67  E-value=3.9e-12  Score=128.13  Aligned_cols=338  Identities=11%  Similarity=-0.051  Sum_probs=275.1

Q ss_pred             hhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHh----cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 010459           74 HQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKN----SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGML  149 (510)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  149 (510)
                      .++...++..+.       ...+.   -++..+..+-..|..    .++.++|.+.|+...+ .   -+...+..|-.+|
T Consensus        56 ~~~~~~A~~~~~-------~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y  121 (490)
T 2xm6_A           56 TKDLTQAMDWFR-------RAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-K---GLPQAQQNLGVMY  121 (490)
T ss_dssp             CCCHHHHHHHHH-------HHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHH-------HHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHH
Confidence            566677777666       22222   245567778888888    8999999999998876 3   3667778888889


Q ss_pred             Hh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          150 CE----EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       150 ~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      ..    .+++++|+..|++..+.|   +...+..|-..|..    .++.++|++.|++..+.|   +..++..|-..|..
T Consensus       122 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          122 HEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSR  195 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc
Confidence            88    889999999999998865   67888888888887    789999999999998876   78889999999988


Q ss_pred             ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh--
Q 010459          222 ----YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN--  291 (510)
Q Consensus       222 ----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--  291 (510)
                          .++.++|.+.|++..+.|   +...+..+-..|..    .+++++|.+.|++..+.|   +...+..+-..|..  
T Consensus       196 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~  269 (490)
T 2xm6_A          196 GLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL  269 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence                899999999999998764   56778888888886    889999999999988775   45667777777777  


Q ss_pred             --cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-----cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc--
Q 010459          292 --FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN-----YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL--  362 (510)
Q Consensus       292 --~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--  362 (510)
                        .++.++|.+.|+...+.|   +...+..|-.+|...     +++++|...++.....  .+...+..+...|...|  
T Consensus       270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~  344 (490)
T 2xm6_A          270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSE  344 (490)
T ss_dssp             TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCH
T ss_pred             CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCc
Confidence              899999999999998765   456777788888887     8999999998877654  45567777777776645  


Q ss_pred             -ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhh----cCc
Q 010459          363 -SHRGIDSVVREMESAKVRWNVTTANIILLAYLK----MKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRI----GFD  433 (510)
Q Consensus       363 -~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~  433 (510)
                       +.++|.+.|++..+.|   +...+..+-..|..    .++.++|...|++..+.|   +...+..+-..+..    .++
T Consensus       345 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d  418 (490)
T 2xm6_A          345 EEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERD  418 (490)
T ss_dssp             HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             ccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCC
Confidence             7889999999998874   67788888888888    899999999999999875   45566666666665    789


Q ss_pred             cchHHHHHHHcCCcc
Q 010459          434 GTGALEMWKRIGFLF  448 (510)
Q Consensus       434 ~~~a~~~~~~~~~~~  448 (510)
                      .++|.+.+++....+
T Consensus       419 ~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          419 YVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999999985544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.63  E-value=2.1e-13  Score=136.67  Aligned_cols=373  Identities=9%  Similarity=-0.079  Sum_probs=204.8

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHhh----c---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 010459          103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNI----E---KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-----A-  169 (510)
Q Consensus       103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-  169 (510)
                      ...||.+-..+...|+.++|++.|+...+.    .   ..+....+|+.+-..|...|++++|...|++..+.     + 
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            345777777777788888888887765432    0   12223466777777888888888888877766532     0 


Q ss_pred             C-CCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCCC
Q 010459          170 L-KPSLEIYNSIIHGYSKI--GKFNEALLFLNEMKEMNLSPQSDTYDGLIQA---YGKYKMYDEIDMCLKMMKLDGCSPD  243 (510)
Q Consensus       170 ~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~  243 (510)
                      . .....+|+.+..++...  +++++|++.|++..+.... +...+..+...   +...++.++|...+++..+.. +.+
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~  208 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN  208 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence            0 11345565555555543  3577888888877664321 34444444433   334566677777777766543 335


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 010459          244 HITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRK  319 (510)
Q Consensus       244 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  319 (510)
                      ...+..+...+..    .|++++|.+.+++...... .+..++..+...|...|++++|.+.+.+..+.. +-+..++..
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~  286 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence            5555555444444    3566777777777665532 256667777777888888888888888777654 334555666


Q ss_pred             HHHHHHhh-------------------cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCC
Q 010459          320 LAEVYIKN-------------------YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR  380 (510)
Q Consensus       320 li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  380 (510)
                      +...|...                   +.++.+...+.......+.....|..+...+...|+.++|.+.|++..+....
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            66555432                   22445555555555666666666777777777777777777777777665443


Q ss_pred             cCHH--HHHHHHH-HHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChh
Q 010459          381 WNVT--TANIILL-AYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDP  457 (510)
Q Consensus       381 p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  457 (510)
                      |...  .+..+.. .+.+.|+.++|+..|++..+  +.|+.......+.         .+.+++++... ..+.+...+.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~---------~l~~~~~~~l~-~~p~~~~~~~  434 (472)
T 4g1t_A          367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKD---------KLQKIAKMRLS-KNGADSEALH  434 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHH---------HHHHHHHHHHH-HCC-CTTHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHH---------HHHHHHHHHHH-hCCCCHHHHH
Confidence            3221  1222221 23456777777777776665  3344332222221         12222222211 1223455677


Q ss_pred             HHHHHhhccCchhHHHHHHhhcCCC-CCCCCcccH
Q 010459          458 LVLAVYGKGHFLRYCEEVYSSLEPY-SREKKRWTY  491 (510)
Q Consensus       458 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~  491 (510)
                      .+...|...|++++|.+.|++..+. ...|++.+|
T Consensus       435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            7778888889999999999888873 345665544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.60  E-value=3.5e-12  Score=136.07  Aligned_cols=352  Identities=10%  Similarity=0.040  Sum_probs=156.2

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          106 FWAVIRFLKNSSRSRQIPQVFDMWKNIEK-SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       106 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      ....+++|...|.+.+|.++++....... +.-+...-+.|+.+..+. +..+..+..++....    +   ...+-..+
T Consensus       988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A          988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence            34666777777777777777777663111 112334444455444444 333333333333210    1   12233344


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459          185 SKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       185 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  264 (510)
                      ...|.+++|.++|++..     -.....+.++.   ..+++++|.++.++..      +..+|..+-.++...|++++|.
T Consensus      1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred             HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence            44444444444444421     01111122211   3334444444443321      2333444444444444444444


Q ss_pred             HHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--------------------------CCCHHHHH
Q 010459          265 GTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT--------------------------PLKEDLVR  318 (510)
Q Consensus       265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------------------------~~~~~~~~  318 (510)
                      +.|.+-      -|...|..++.+|.+.|++++|.+.+....+..-                          .++...+.
T Consensus      1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A         1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred             HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence            444221      1333444444444444444444444433333221                          12222333


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010459          319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD  398 (510)
Q Consensus       319 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  398 (510)
                      .+...|...|++++|..++...        ..|..+...+.+.|++++|.+.+++.      -+..+|..+-.+|...|+
T Consensus      1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A         1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhH
Confidence            3333333444444444333321        23444444444444444444444332      133444444444444444


Q ss_pred             hhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhc--cCchhHHHHHH
Q 010459          399 FKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK--GHFLRYCEEVY  476 (510)
Q Consensus       399 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~  476 (510)
                      +..|......     +..+...+..++..|.+.|.+++|+.+++...... +.....+.-+...|++  -+++.++.++|
T Consensus      1266 f~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A         1266 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred             HHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4444333322     22244455566666777777777777776553322 2334445444444444  35555666666


Q ss_pred             hhcCCCCCCC------CcccHHHHHHHHHhcCCCCCC
Q 010459          477 SSLEPYSREK------KRWTYQNLIDLVIKHNGKNLD  507 (510)
Q Consensus       477 ~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a  507 (510)
                      ..-..  ++|      +...|..++-.|.+.|++|.|
T Consensus      1340 ~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A         1340 WSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred             HHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            53332  222      345677777777777777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.59  E-value=4e-12  Score=135.68  Aligned_cols=343  Identities=12%  Similarity=0.081  Sum_probs=252.5

Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459          109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG  188 (510)
Q Consensus       109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  188 (510)
                      +...|...|.+++|.++|+...      -.....+.++.   ..|++++|.++.++..      +..+|..+-.++.+.|
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence            4566777888888888887531      12222333333   6788888888888653      5788999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459          189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  268 (510)
                      ++++|.+.|.+.      -|...|..++..|.+.|++++|.+.|....+..  ++....+.++.+|++.+++++..... 
T Consensus      1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred             CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence            999999999663      378889999999999999999999999877654  34333445899999999988644432 


Q ss_pred             HHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459          269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE  348 (510)
Q Consensus       269 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  348 (510)
                         .   .|+...|..+-..|...|++++|..+|...         ..|..+...|.+.|++++|.+.++..     .+.
T Consensus      1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~ 1250 (1630)
T 1xi4_A         1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NST 1250 (1630)
T ss_pred             ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCH
Confidence               1   346677888999999999999999999885         48999999999999999999997665     567


Q ss_pred             HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC-CCCCHHHHHHHHHh
Q 010459          349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH-VKPDIVTIGILYDA  427 (510)
Q Consensus       349 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~  427 (510)
                      .+|..+-.+|...|++..|......+.     .+...+..++..|.+.|.+++|+.+++.-.... -....+|.-..+.+
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence            999999999999999888877665432     366777899999999999999999998776432 11223333444445


Q ss_pred             hhhcCccchHHHHHHHcCCcc----ccccccChhHHHHHhhccCchhHHHH-------------HHhhcCCCCCCCCccc
Q 010459          428 RRIGFDGTGALEMWKRIGFLF----KTVEINTDPLVLAVYGKGHFLRYCEE-------------VYSSLEPYSREKKRWT  490 (510)
Q Consensus       428 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~-------------~~~~m~~~g~~p~~~~  490 (510)
                      -.+.++..+++++|.+-....    ..-+...|.-++-.|.+.|+++.|..             .|+....  ...|...
T Consensus      1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~el 1403 (1630)
T 1xi4_A         1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVEL 1403 (1630)
T ss_pred             hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHH
Confidence            556667777777776542210    01234558888889999999998872             2333332  2345556


Q ss_pred             HHHHHHHHHhcC
Q 010459          491 YQNLIDLVIKHN  502 (510)
Q Consensus       491 ~~~li~~~~~~g  502 (510)
                      |...+.-|...+
T Consensus      1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHHHHHHhhC
Confidence            777777666544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=3.7e-13  Score=122.77  Aligned_cols=180  Identities=11%  Similarity=0.056  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL--SPQ----SDTYDG  214 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~t~~~  214 (510)
                      .+..+...+.+.|++++|...|++..+..  .+...|..+...|...|++++|++.|++..+...  .|+    ..++..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34445555555555555555555555444  4455555555555555555555555555543211  111    345555


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       215 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                      +...|.+.|++++|...|++..+.  .|+.       ..+...|++++|.+.+++...... .+...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence            555555555555555555555443  2221       223444555555555555554321 123344445555555555


Q ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHH
Q 010459          295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL  333 (510)
Q Consensus       295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  333 (510)
                      +++|.+.++...+.. +.+..++..+...|.+.|++++|
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A  192 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEA  192 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHH
Confidence            555555555554432 12233333344444443433333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=6.8e-13  Score=120.95  Aligned_cols=226  Identities=9%  Similarity=0.005  Sum_probs=189.0

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK--PS----LEIY  177 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~  177 (510)
                      ..|..+...+...|++++|.+.|+...+ ..  .+...+..+...|...|++++|...|++..+....  ++    ..+|
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4677888899999999999999999987 34  78889999999999999999999999998865311  12    5889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      ..+...|.+.|++++|.+.|++..+.  .|+.       ..+.+.|++++|...++++.... +.+...|..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            99999999999999999999999884  3553       34666788999999999998764 34567888899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHH
Q 010459          258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLG  337 (510)
Q Consensus       258 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  337 (510)
                      |++++|.+.|++..+.... +..++..+...+...|++++|.+.++...+.. +.+...+..+...|.+.|++++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999876433 67889999999999999999999999998765 445777888888888888888887776


Q ss_pred             HHHHhhc
Q 010459          338 DDLASRI  344 (510)
Q Consensus       338 ~~~~~~~  344 (510)
                      .......
T Consensus       231 ~~a~~~~  237 (258)
T 3uq3_A          231 DAARTKD  237 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            6554433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.57  E-value=5.9e-12  Score=126.02  Aligned_cols=329  Identities=9%  Similarity=-0.123  Sum_probs=217.4

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcC-----CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCC
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEK-----SR-INEFNSQKIIGMLCEE--GLMEEAVRAFQEMEGFALKPS  173 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~  173 (510)
                      ...+|+.+...|...|++++|...++...+...     .. ....+++.+-.++.+.  +++++|+..|++..+... -+
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~  171 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KN  171 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CC
Confidence            346788999999999999999999988765311     11 2345666555555554  579999999999887642 24


Q ss_pred             HHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010459          174 LEIYNSIIHG---YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHIT  246 (510)
Q Consensus       174 ~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~  246 (510)
                      ...+..+...   +...++.++|++.+++..+.... +..++..+...+.+    .|+.++|.+++++..... +.+...
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~  249 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV  249 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence            5556555554   34567788999999988775422 55666666555554    467788999999887665 457888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc-------------------CChhHHHHHHHHHHh
Q 010459          247 YNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF-------------------GMLDKMEKFYKRLLN  307 (510)
Q Consensus       247 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~  307 (510)
                      +..+...|...|++++|.+.|++..+.... +..++..+...|...                   +..++|...+....+
T Consensus       250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  328 (472)
T 4g1t_A          250 LRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE  328 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            999999999999999999999998876422 566677776666432                   235667777777766


Q ss_pred             cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHH---HHHHH-HHhhhhcccccHHHHHHHHHHCCCCcCH
Q 010459          308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV---WCLRL-LSHACLLSHRGIDSVVREMESAKVRWNV  383 (510)
Q Consensus       308 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~  383 (510)
                      .. +.+...+..+...|.+.|++++|...++......+.+...   +..+. ......|+.++|++.|++..+..  |+.
T Consensus       329 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~  405 (472)
T 4g1t_A          329 AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKS  405 (472)
T ss_dssp             HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCC
T ss_pred             cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccc
Confidence            54 3345567788999999999999999998887665544322   22222 23446688899999999988754  333


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHcCCc
Q 010459          384 TTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRIGFL  447 (510)
Q Consensus       384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~~~~  447 (510)
                      ......         ...+.++++...+.. +.+..+|..+-..+...|+.++|++.+++....
T Consensus       406 ~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          406 REKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             HHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            222222         233445555554321 235677888888899999999999999987544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.55  E-value=3.9e-12  Score=115.72  Aligned_cols=202  Identities=9%  Similarity=-0.044  Sum_probs=168.3

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIH  182 (510)
Q Consensus       103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  182 (510)
                      +..|..+...+...|++++|.+.|+.+.+.  .+.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence            346778888899999999999999988752  34567888899999999999999999999988764 337788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459          183 GYSKIGKFNEALLFLNEMKEMNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK  261 (510)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  261 (510)
                      .|...|++++|.+.|+++.+.+..| +...+..+...|.+.|++++|...|++..+.. +.+...|..+...|...|+++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999987743445 56678888889999999999999999988764 346788888999999999999


Q ss_pred             HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       262 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      +|...+++..+... .+...+..+...+...|+.++|.+.++.+.+..
T Consensus       193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            99999999886543 366778888888899999999999999888754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=1.2e-12  Score=116.60  Aligned_cols=196  Identities=12%  Similarity=0.001  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      +...|..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...|..+-.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            3344444444444444444444444444433211 33444444444444444444444444444332 223344444444


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010459          253 EFACA-----------GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLA  321 (510)
Q Consensus       253 ~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  321 (510)
                      .+...           |++++|+..|++..+.... +...+..+-.++...|++++|.+.+++..+..  .+...+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la  158 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence            44444           5555555555555543211 34445555555555555555555555555544  3444455555


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHH
Q 010459          322 EVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVRE  373 (510)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  373 (510)
                      .+|...|++++|...++......+.+...+..+...+...|+.++|.+.|++
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5555555554444444444333344444444444444444444444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=1.3e-11  Score=109.90  Aligned_cols=198  Identities=12%  Similarity=-0.004  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGY  184 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  184 (510)
                      .+..+...+...|++++|.+.++...+  ..+.+...+..+...|...|++++|...|++..+.. +.+..+|..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~   86 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALK--SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            344444444444555555554444442  112233444444444444455555544444444332 12344444444444


Q ss_pred             Hhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459          185 SKI-GKFNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       185 ~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  262 (510)
                      ... |++++|.+.|+++.+.+..|+ ..++..+...+.+.|++++|...|+++.+.. +.+...|..+...+.+.|++++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence            444 444444444444444211121 3344444444444444444444444444332 1234444444444444444444


Q ss_pred             HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      |.+.+++..+.....+...+..+...+...|+.+.+..+++.+.
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44444444433211233334444444444444444444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=5.4e-12  Score=112.29  Aligned_cols=213  Identities=9%  Similarity=-0.068  Sum_probs=181.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459          137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI  216 (510)
Q Consensus       137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  216 (510)
                      .+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+... .+..++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~   83 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence            456778889999999999999999999998764 34688999999999999999999999999987643 3778999999


Q ss_pred             HHHHcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          217 QAYGKY-KMYDEIDMCLKMMKLDGCSPD-HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       217 ~~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                      ..|... |++++|...|+++.+.+..|+ ...|..+...+...|++++|.+.|+++.+... .+...+..+...+...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence            999999 999999999999987322333 67888999999999999999999999987642 257889999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459          295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC  352 (510)
Q Consensus       295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  352 (510)
                      +++|.+.++.+.+.....+...+..+...+.+.|+.+.+...++.+....+.+.....
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999987652256777888888999999999999999888877766665544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.53  E-value=7.8e-12  Score=113.70  Aligned_cols=206  Identities=9%  Similarity=-0.080  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA  218 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  218 (510)
                      ...|..+...|...|++++|...|+++.+.. +.+...|..+...|.+.|++++|.+.|+++.+... .+..++..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence            4667788888999999999999999988764 34678888999999999999999999999877643 267788888899


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK  297 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  297 (510)
                      |.+.|++++|...|+++.+.+..| +...|..+...|...|++++|.+.|++..+... .+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999988732334 566778888889999999999999998887542 257788888888999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459          298 MEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE  348 (510)
Q Consensus       298 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  348 (510)
                      |.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++.+....+.+.
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            999998887654 34566677777777777777777777666555544443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=1.3e-12  Score=116.16  Aligned_cols=198  Identities=13%  Similarity=0.040  Sum_probs=108.2

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      +++..+..+...+.+.|++++|...|+...+  -.+.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            3444555566666666666666666666552  233455566666666666666666666666666543 2245566666


Q ss_pred             HHHHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          181 IHGYSKI-----------GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNL  249 (510)
Q Consensus       181 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  249 (510)
                      ...+.+.           |++++|++.|++..+.... +..++..+-..|...|++++|...|++..+..  .+...|..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            6666666           6666666666666554322 44555666666666666666666666665554  45556666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010459          250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRL  305 (510)
Q Consensus       250 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m  305 (510)
                      +...|...|++++|...|++..+.... +...+..+...+...|++++|.+.++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            666666666666666666666554221 4455555566666666666666655543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=2.2e-12  Score=116.54  Aligned_cols=203  Identities=9%  Similarity=0.003  Sum_probs=144.5

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      .++..|..+...+...|++++|.+.|+...+  ..+.+...+..+...|.+.|++++|...|++..+.. +.+...|..+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   97 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA   97 (243)
T ss_dssp             ---------------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence            4455677777888888999999999888873  344567788888888888999999999998887664 3367888888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      ...|...|++++|.+.|+++.+... .+..++..+...|.+.|++++|...+++..+.. +.+...|..+...+.+.|++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence            8888888999999998888877542 367778888888888888888888888887654 34677888888888888888


Q ss_pred             HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      ++|.+.|++..+... .+..++..+...+...|++++|.+.++.+.+..
T Consensus       176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            888888888876532 256778888888888888888888888887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.51  E-value=2.2e-12  Score=116.53  Aligned_cols=212  Identities=16%  Similarity=0.103  Sum_probs=146.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459          137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI  216 (510)
Q Consensus       137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  216 (510)
                      .....|..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|++.|++..+... .+..++..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence            445667777888888899999999999888754 34678888888889999999999999988877542 3677888888


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChh
Q 010459          217 QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLD  296 (510)
Q Consensus       217 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~  296 (510)
                      ..|.+.|++++|...|+++.+.. +.+...|..+...+.+.|++++|.+.+++..+... .+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence            88888999999999998887664 44677888888888888999999998888876532 25677788888888888888


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHH
Q 010459          297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL  353 (510)
Q Consensus       297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  353 (510)
                      +|.+.++.+.+.. +.+..++..+...|.+.|++++|...++......+.+...+..
T Consensus       177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  232 (243)
T 2q7f_A          177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA  232 (243)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence            8888888887654 3456667777777777777777777766666555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.50  E-value=1.3e-12  Score=120.46  Aligned_cols=246  Identities=8%  Similarity=-0.102  Sum_probs=146.8

Q ss_pred             hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALK---PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE  227 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  227 (510)
                      ..|++++|+..|+++.+....   .+..+|..+...+...|++++|.+.|++..+... .+..+|..+...|.+.|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence            456777788888877765321   1356677777777777788888877777766532 256777777777777777777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      |...|++..+.. +.+...|..+...|.+.|++++|.+.|+++.+..  |+.......+..+...|++++|...+....+
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            777777777653 3356677777777777777777777777776542  3333333344444555677777777766554


Q ss_pred             cCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCC--c-CHH
Q 010459          308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVR--W-NVT  384 (510)
Q Consensus       308 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~  384 (510)
                      .. +++...+. +...+                                  ...++.++|.+.+++..+....  | +..
T Consensus       173 ~~-~~~~~~~~-~~~~~----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  216 (275)
T 1xnf_A          173 KS-DKEQWGWN-IVEFY----------------------------------LGNISEQTLMERLKADATDNTSLAEHLSE  216 (275)
T ss_dssp             HS-CCCSTHHH-HHHHH----------------------------------TTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             cC-CcchHHHH-HHHHH----------------------------------HHhcCHHHHHHHHHHHhcccccccccccH
Confidence            32 12222221 22333                                  3333334455555554443211  1 246


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCH-HHHHHHHHhhhhcCccchHHHHH
Q 010459          385 TANIILLAYLKMKDFKHLRVLLSELPTRHVKPDI-VTIGILYDARRIGFDGTGALEMW  441 (510)
Q Consensus       385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~  441 (510)
                      +|..+...|.+.|++++|...|++..+.  .|+. ..+   ..++...|++++|++.+
T Consensus       217 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          217 TNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFVEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCHHH---HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHHHH---HHHHHHHHHHHhhHHHH
Confidence            6777777888888888888888888764  3532 222   22344445566655543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=8.2e-13  Score=121.80  Aligned_cols=253  Identities=11%  Similarity=-0.059  Sum_probs=179.1

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSR--INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF  190 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  190 (510)
                      ....|++++|.+.|+.+.+.....  .+..++..+...|...|++++|...|++..+.. +.+..+|..+...|...|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence            456789999999999998621111  246778899999999999999999999998874 34789999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459          191 NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM  270 (510)
Q Consensus       191 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  270 (510)
                      ++|.+.|++..+... .+..++..+...|.+.|++++|...|+++.+.  .|+.......+..+...|++++|...+++.
T Consensus        94 ~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           94 DAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999988643 26789999999999999999999999999875  455555555666667889999999999887


Q ss_pred             HHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHH
Q 010459          271 LTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV  350 (510)
Q Consensus       271 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  350 (510)
                      .... +++...+ .++..+...++.++|.+.+....+..  |+.                             .+.+...
T Consensus       171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~-----------------------------~~~~~~~  217 (275)
T 1xnf_A          171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSL-----------------------------AEHLSET  217 (275)
T ss_dssp             HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHH-----------------------------HHHHHHH
T ss_pred             HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccc-----------------------------cccccHH
Confidence            7653 2333334 46777778888888999888775432  110                             0001233


Q ss_pred             HHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHH
Q 010459          351 WCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL  406 (510)
Q Consensus       351 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  406 (510)
                      |..+...+...|+.++|.+.|++..+..+. +.   .....++...|++++|++-+
T Consensus       218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          218 NFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence            444445555555556666666666654321 21   22233455556666655544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.49  E-value=7.9e-12  Score=115.07  Aligned_cols=243  Identities=10%  Similarity=0.002  Sum_probs=155.5

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--LEIYNSII  181 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li  181 (510)
                      ..+......+...|++++|.+.|+...+  ..+.+...+..+...|.+.|++++|+..|++..+....|+  ..+|..+.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3445566677778888888888887764  2223444677777788888888888888888776331222  33477777


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010459          182 HGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK  261 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  261 (510)
                      ..|...|++++|++.|++..+.... +..++..+...|.+.|++++|...|++..+.. +.+...|..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888887765432 55677778888888888888888888777653 345566666662344445788


Q ss_pred             HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhhcchh
Q 010459          262 RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM---LDKMEKFYKRLLNSR-TPLK------EDLVRKLAEVYIKNYMFS  331 (510)
Q Consensus       262 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~~~~~  331 (510)
                      +|.+.|++..+.... +...+..+...+...|+   .++|...++...+.. -.|+      ...+..+...|.+.|+++
T Consensus       160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            888888877765322 35666666677777676   666777777666431 1122      134455555555556665


Q ss_pred             HHHHHHHHHHhhcCCchHHH
Q 010459          332 RLDDLGDDLASRIGRTELVW  351 (510)
Q Consensus       332 ~a~~~~~~~~~~~~~~~~~~  351 (510)
                      +|...++......+.+...+
T Consensus       239 ~A~~~~~~al~~~p~~~~a~  258 (272)
T 3u4t_A          239 KADAAWKNILALDPTNKKAI  258 (272)
T ss_dssp             HHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhcCccHHHHH
Confidence            55555555555544444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=1.7e-10  Score=106.27  Aligned_cols=158  Identities=10%  Similarity=-0.072  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDG  214 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~  214 (510)
                      ..++..+-..|.+.|++++|+..|++..+   ..+...+..+...|..    .+++++|++.|++..+.+   +..++..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            34444455555555666666666655554   2234455555555555    566666666666555544   4555555


Q ss_pred             HHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459          215 LIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAIL  286 (510)
Q Consensus       215 li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  286 (510)
                      +...|..    .+++++|...|++..+.+   +...+..+-..|..    .+++++|++.|++..+.+   +...+..+-
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  153 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence            5555555    566666666666555543   44555555555555    566666666666555544   334444555


Q ss_pred             HHHHh----cCChhHHHHHHHHHHhc
Q 010459          287 DAYMN----FGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       287 ~~~~~----~g~~~~a~~~~~~m~~~  308 (510)
                      ..|..    .+++++|.+.++...+.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            55555    55666666666555544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=1.9e-11  Score=112.51  Aligned_cols=243  Identities=11%  Similarity=-0.005  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQA  218 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~  218 (510)
                      .+......+.+.|++++|+..|++..+... .+...|..+...|.+.|++++|++.|++..+.+..|+  ..+|..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            344566777888999999999998887642 3455788888888899999999999988877432222  3457888888


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      |.+.|++++|...|++..+.. +.+..+|..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            888899999998888887754 3466788888888888888888888888877652 22455666665244445588888


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC
Q 010459          299 EKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK  378 (510)
Q Consensus       299 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  378 (510)
                      .+.++...+.. +.+...+..+...+...+..                               ...++|...+++..+..
T Consensus       162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPD-------------------------------TKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTT-------------------------------CSSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcc-------------------------------hhhHHHHHHHHHHHHHH
Confidence            88888877654 22344444444444444430                               00344555555544321


Q ss_pred             -CCcC------HHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHH
Q 010459          379 -VRWN------VTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT  420 (510)
Q Consensus       379 -~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  420 (510)
                       -.|+      ..+|..+...|.+.|++++|.+.|++..+.  .|+...
T Consensus       210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~  256 (272)
T 3u4t_A          210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKK  256 (272)
T ss_dssp             GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHH
Confidence             1122      256777888888889999999999988863  465433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=1.4e-10  Score=106.99  Aligned_cols=220  Identities=9%  Similarity=-0.014  Sum_probs=185.2

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE----EGLMEEAVRAFQEMEGFALKPSLEIY  177 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~  177 (510)
                      ++.++..+-..+...|++++|.+.|+...+    +-+...+..+-..|..    .+++++|...|++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            445677788889999999999999998875    3456788889999999    999999999999999875   78899


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          178 NSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHITYNL  249 (510)
Q Consensus       178 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~  249 (510)
                      ..+...|..    .+++++|++.|++..+.+   +..++..+-..|.+    .+++++|...|++..+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            999999999    999999999999999876   78899999999999    999999999999999865   6677888


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010459          250 LIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLVRKLA  321 (510)
Q Consensus       250 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  321 (510)
                      +-..|..    .+++++|...|++..+.+   +...+..+-..|..    .+++++|.+.++...+.+.   ...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence            8888888    999999999999998875   56778888889999    9999999999999988752   55556666


Q ss_pred             HHHHh----hcchhHHHHHHHHH
Q 010459          322 EVYIK----NYMFSRLDDLGDDL  340 (510)
Q Consensus       322 ~~~~~----~~~~~~a~~~~~~~  340 (510)
                      .+|.+    .+++++|...++..
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHH
Confidence            66665    55555555544433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.46  E-value=2.7e-11  Score=116.95  Aligned_cols=195  Identities=9%  Similarity=0.013  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL-MEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      .|..+-..+.+.|++++|++.++...+  -.+-+...|+.+-..+.+.|+ +++|+..|++..+.. +.+...|+.+...
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~  175 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            344444445555555555555555543  112234445555555555553 555555555555443 1244555555555


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC-AGLLKR  262 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~  262 (510)
                      +.+.|++++|+..|+++++.... +..+|..+..++.+.|++++|...|+++.+.. +.+...|+.+-..+.+ .|..++
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence            55555555555555555543322 44455555555555555555555555555443 2244555555555555 333344


Q ss_pred             H-----HHHHHHHHHCCCccCHHHHHHHHHHHHhcC--ChhHHHHHHHHH
Q 010459          263 M-----EGTYKSMLTKRMHLRSSTMVAILDAYMNFG--MLDKMEKFYKRL  305 (510)
Q Consensus       263 A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m  305 (510)
                      |     ++.|++....... +...|..+...+...|  +.++|.+.+..+
T Consensus       254 A~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            4     2444444433211 3334444444444444  344444444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.46  E-value=3.1e-11  Score=116.52  Aligned_cols=249  Identities=8%  Similarity=-0.022  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK-FNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      ...|+.+-..+.+.|++++|+..|++..+.. +-+...|+.+...+.+.|+ +++|++.|++..+.... +...|..+-.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            4567778888999999999999999999874 3368899999999999997 99999999999986544 7889999999


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh-cCChh
Q 010459          218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN-FGMLD  296 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~  296 (510)
                      .+.+.|++++|...|+++.+.. +.+...|..+-.++.+.|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999999875 458899999999999999999999999999987544 77889999999999 66658


Q ss_pred             HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhhc--chhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc-------
Q 010459          297 KM-----EKFYKRLLNSRTPLKEDLVRKLAEVYIKNY--MFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-------  362 (510)
Q Consensus       297 ~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-------  362 (510)
                      +|     .+.++..++.. +-+...+..+...|.+.|  +++++......+ ...+.+...+..+...|...|       
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            87     48888888754 446778888888898888  688999888887 667777888889988888875       


Q ss_pred             -c-cccHHHHHHHH-HHCCCCcCHHHHHHHHHHHH
Q 010459          363 -S-HRGIDSVVREM-ESAKVRWNVTTANIILLAYL  394 (510)
Q Consensus       363 -~-~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~  394 (510)
                       + .++|.++|+++ .+..+. ....|..+...+.
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~  364 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence             2 48899999998 665432 4566766666554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=7.1e-10  Score=104.20  Aligned_cols=183  Identities=7%  Similarity=-0.080  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HH-HHHHHHHHHHhcCChhHHHHHHH
Q 010459          226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SS-TMVAILDAYMNFGMLDKMEKFYK  303 (510)
Q Consensus       226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~  303 (510)
                      ++|..+|++..+.-.+.+...|..+...+.+.|++++|.++|++..+.  .|+ .. .|..+...+.+.|++++|..+|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            444444444443100123334444444444444444444444444432  221 11 34444444444444444444444


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHH-hhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC-CCc
Q 010459          304 RLLNSRTPLKEDLVRKLAEVYI-KNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK-VRW  381 (510)
Q Consensus       304 ~m~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p  381 (510)
                      +..+.. +.+...+........ ..|++++|..+++......+.+...|..++..+...|+.++|..+|++..... +.|
T Consensus       159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p  237 (308)
T 2ond_A          159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence            444332 112222221111111 12334444444333333333344445555555555555555666666666542 233


Q ss_pred             --CHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          382 --NVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       382 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                        ....|..++..+.+.|+.++|..+++++.+
T Consensus       238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              345566666666666666666666666654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.36  E-value=1.9e-11  Score=119.94  Aligned_cols=26  Identities=4%  Similarity=-0.210  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          385 TANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       385 ~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      ++..+...|.+.|++++|...|++..
T Consensus       345 ~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          345 ACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44444555555555555555555544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=6.8e-10  Score=104.37  Aligned_cols=217  Identities=12%  Similarity=0.062  Sum_probs=149.5

Q ss_pred             CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLC-------EEGLM-------EEAVRAFQEMEGFALKPSLEIYNSIIHGYS  185 (510)
Q Consensus       120 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  185 (510)
                      ++|..+|+....  ..+-+...|..+...+.       +.|++       ++|..+|++..+.-.+.+...|..+...+.
T Consensus        33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            456677777764  23456667777777665       34775       888888888887311235668888888888


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHH
Q 010459          186 KIGKFNEALLFLNEMKEMNLSPQ-SD-TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA-CAGLLKR  262 (510)
Q Consensus       186 ~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~  262 (510)
                      +.|++++|.++|++..+.  .|+ .. +|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence            888888888888888774  343 33 78888888888888888888888888654 234455543333322 2688888


Q ss_pred             HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhhcchhHHHHHHHH
Q 010459          263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-TPL--KEDLVRKLAEVYIKNYMFSRLDDLGDD  339 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~  339 (510)
                      |.++|+...+... -+...|..++..+.+.|+.++|+.+|++..+.. +.|  ....+..++..+.+.|+.+.+..++..
T Consensus       188 A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          188 AFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888888776422 256777788888888888888888888888753 344  345666666666666666666655444


Q ss_pred             HHh
Q 010459          340 LAS  342 (510)
Q Consensus       340 ~~~  342 (510)
                      ...
T Consensus       267 a~~  269 (308)
T 2ond_A          267 RFT  269 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.35  E-value=3.1e-11  Score=117.87  Aligned_cols=61  Identities=7%  Similarity=-0.169  Sum_probs=35.4

Q ss_pred             HHHHHHHHhhhhcccccHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          350 VWCLRLLSHACLLSHRGIDSVVREMESA----KVRW-NVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       350 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      ++..+...+...|+.++|.+.+++..+.    +-.+ ...++..+...|.+.|++++|...+++..
T Consensus       269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444555555555555555554432    1111 14566667777788888888888877765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.33  E-value=3.3e-11  Score=114.06  Aligned_cols=88  Identities=16%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 010459          147 GMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEM----NLSP-QSDTYDGLIQ  217 (510)
Q Consensus       147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~  217 (510)
                      ..+.+.|++++|...|++..+.... +    ...|..+...|...|++++|.+.+++..+.    +-.| ...++..+..
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           13 ERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            3344444555555554444443211 1    233444444444455555555444443221    1011 1233444444


Q ss_pred             HHHccCCHHHHHHHHHHH
Q 010459          218 AYGKYKMYDEIDMCLKMM  235 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m  235 (510)
                      .|...|++++|...+++.
T Consensus        92 ~~~~~g~~~~A~~~~~~a  109 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRH  109 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHH
Confidence            555555555555555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=4.4e-11  Score=112.13  Aligned_cols=245  Identities=16%  Similarity=0.064  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGF-------ALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM------NL  205 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~  205 (510)
                      ..++..+...|...|++++|...|+++.+.       .......+|..+...|...|++++|.+.|++..+.      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            344555666666666666666666665542       11223455666666666677777776666666542      11


Q ss_pred             -CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 010459          206 -SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD------GC-SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK----  273 (510)
Q Consensus       206 -~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  273 (510)
                       .....++..+...|...|++++|...|++..+.      +- +.....+..+...|...|++++|.+.|++..+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence             123456666777777777777777777766542      11 123455666777777778888888777776643    


Q ss_pred             --CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhh
Q 010459          274 --RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR-------TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASR  343 (510)
Q Consensus       274 --g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  343 (510)
                        +..| ...++..+...+...|++++|.+.++++.+..       ..+.........                      
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~----------------------  244 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA----------------------  244 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------------
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------------
Confidence              2122 23466777777778888888888887776421       111100000000                      


Q ss_pred             cCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          344 IGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       344 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                           ..+......+...+...++...++....... .+..++..+...|.+.|++++|.++|++..+
T Consensus       245 -----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          245 -----EEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -----HHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                 1111112222333444555556665554322 2456777888888888888888888887764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.31  E-value=2.9e-11  Score=118.53  Aligned_cols=274  Identities=14%  Similarity=0.057  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEM----NL-SPQSD  210 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~  210 (510)
                      ..+..+...+...|++++|+..|++..+.+.. +.    ..|..+...|...|++++|.+.|++..+.    +- .....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            44556667888899999999999998876322 33    47888888999999999999999887553    11 12345


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLD----G-CSPDHITYNLLIQEFACAGL-----------------LKRMEGTYK  268 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~  268 (510)
                      ++..+...|...|++++|...|++..+.    + ......++..+...|...|+                 +++|.+.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7778888888899999999988887643    1 11234567777888888888                 888888887


Q ss_pred             HHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459          269 SMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLAS  342 (510)
Q Consensus       269 ~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  342 (510)
                      +..+.    +..| ...++..+...+...|++++|.+.+++..+... .++..                           
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------  260 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------  260 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---------------------------
Confidence            76532    2111 234667777778888888888888877654210 01100                           


Q ss_pred             hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCC----C-CcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhC----C
Q 010459          343 RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAK----V-RWNVTTANIILLAYLKMKDFKHLRVLLSELPTR----H  413 (510)
Q Consensus       343 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g  413 (510)
                         .....+..+...+...|+.++|.+.|++..+..    . .....++..+...|.+.|++++|..++++..+.    +
T Consensus       261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence               001233344444455555555555555444321    1 112467778888899999999999999887642    1


Q ss_pred             CCC-CHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          414 VKP-DIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       414 ~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      -.+ ...++..+...+...|+.++|.+.+++.
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            111 1235666667788889999999988876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.31  E-value=9e-11  Score=116.60  Aligned_cols=347  Identities=9%  Similarity=-0.039  Sum_probs=212.5

Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLM---EEAVRAFQEMEGFALKPSLEIYNSIIHGYS  185 (510)
Q Consensus       109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  185 (510)
                      +...+.+.|++++|.++|+...+ .+   +...+..|-.+|...|+.   ++|+..|++..+.    +...+..|-..+.
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~-~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAE-LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            55667788999999999998876 44   233444455666667777   8999999888843    5666677766555


Q ss_pred             hcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          186 KIG-----KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE---IDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       186 ~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      ..+     +.++|++.|++..+.|..   ..+..|...|...+..+.   +.+.+......|   +...+..+...|...
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~  154 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ  154 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence            555     778999999999887743   266667777776654433   445555554443   345666777777777


Q ss_pred             CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh----cch
Q 010459          258 GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFG---MLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKN----YMF  330 (510)
Q Consensus       258 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~  330 (510)
                      +.++++......+.+.-...+...+..+-..|...|   +.++|.+.|....+.| .++...+..|-.+|...    +++
T Consensus       155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence            755444444333222111112237777888888888   8889999999888887 45555556677777554    578


Q ss_pred             hHHHHHHHHHHhhcCCchHHHHHHHHH-h--hhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-----ChhHH
Q 010459          331 SRLDDLGDDLASRIGRTELVWCLRLLS-H--ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK-----DFKHL  402 (510)
Q Consensus       331 ~~a~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A  402 (510)
                      ++|...++...   +.++..+..+... +  ...++.++|.+.|++..+.|   +...+..|-..|. .|     +.++|
T Consensus       234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            88888887766   5566677776665 3  45788889999999988876   5666666777776 44     89999


Q ss_pred             HHHHHhhhhCCCCCCHHHHHHHHHhhhh----cCccchHHHHHHHcCCccccccccChhHHHHHhhc----cCchhHHHH
Q 010459          403 RVLLSELPTRHVKPDIVTIGILYDARRI----GFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGK----GHFLRYCEE  474 (510)
Q Consensus       403 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~  474 (510)
                      ...|++.. .|   +...+..|-..|..    ..+.++|.+++++....+.   ......+..+|..    ..+.++|..
T Consensus       307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~  379 (452)
T 3e4b_A          307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV  379 (452)
T ss_dssp             HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred             HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            99998887 43   34444444444433    4488889999988755432   2233344444443    457888888


Q ss_pred             HHhhcCCCCC
Q 010459          475 VYSSLEPYSR  484 (510)
Q Consensus       475 ~~~~m~~~g~  484 (510)
                      .|+...+.|.
T Consensus       380 ~~~~A~~~g~  389 (452)
T 3e4b_A          380 FSQLAKAQDT  389 (452)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHCCC
Confidence            8887776553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.31  E-value=6.5e-11  Score=115.55  Aligned_cols=278  Identities=11%  Similarity=0.003  Sum_probs=175.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 010459          136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEM----NLSP  207 (510)
Q Consensus       136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p  207 (510)
                      .+....+...-..+.+.|++++|...|++..+.+.. +    ..+|..+...|...|++++|...|++..+.    +-.|
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            345556667777788888888888888888776321 3    356777778888888888888888876432    2111


Q ss_pred             -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HH
Q 010459          208 -QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPD----HITYNLLIQEFACAGL--------------------LK  261 (510)
Q Consensus       208 -~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~  261 (510)
                       ...++..+...|...|++++|...+++..+... .++    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             244667777777888888888888777653210 012    3466677777777777                    77


Q ss_pred             HHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcchhHHHH
Q 010459          262 RMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDD  335 (510)
Q Consensus       262 ~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~  335 (510)
                      +|.+.+++....    +..| ...++..+...+...|++++|.+.+++..+... .++..                    
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------  224 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------  224 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH--------------------
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH--------------------
Confidence            777777665431    2111 124566666677777777777777766653210 11110                    


Q ss_pred             HHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          336 LGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESA----KVRW-NVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                                ....++..+...+...|+.++|.+.+++..+.    +..+ ...++..+...|.+.|++++|...+++..
T Consensus       225 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  294 (406)
T 3sf4_A          225 ----------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  294 (406)
T ss_dssp             ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence                      00123444444555555555555555554432    1111 15677888889999999999999999886


Q ss_pred             hC----CCCCC-HHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          411 TR----HVKPD-IVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       411 ~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                      +.    +-.+. ..++..+-..+...|++++|.+.+++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  333 (406)
T 3sf4_A          295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  333 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            42    11111 345666677788899999999998876

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=7.4e-10  Score=95.28  Aligned_cols=167  Identities=17%  Similarity=0.118  Sum_probs=118.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      +..+|..+-..|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++|.+.+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            55667777777777777777777777777654 235677777777777777777777777777665433 5566666777


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH
Q 010459          218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK  297 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  297 (510)
                      .+...++++.|...+.+..+.. +.+...+..+-..|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            7777777777777777776553 345667777777777778888888877777765322 56677777777777788888


Q ss_pred             HHHHHHHHHhc
Q 010459          298 MEKFYKRLLNS  308 (510)
Q Consensus       298 a~~~~~~m~~~  308 (510)
                      |.+.|++.++.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88777777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.30  E-value=3.7e-11  Score=113.71  Aligned_cols=167  Identities=12%  Similarity=0.018  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCS-PDH  244 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~  244 (510)
                      ...+......+...|++++|...|++..+.... +    ...+..+...|...|++++|...+++..+.    +-. ...
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            344556667788899999999999998875422 2    367788888999999999999998886532    111 235


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCC--------------------hhHHH
Q 010459          245 ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGM--------------------LDKME  299 (510)
Q Consensus       245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~--------------------~~~a~  299 (510)
                      .++..+...|...|++++|.+.+++..+.    +-.+ ...++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            57778888899999999999998886642    1111 13467777888888888                    88888


Q ss_pred             HHHHHHHhc----CCCC-CHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459          300 KFYKRLLNS----RTPL-KEDLVRKLAEVYIKNYMFSRLDDLGDDLA  341 (510)
Q Consensus       300 ~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~  341 (510)
                      +.+.+..+.    +..+ ....+..+...|...|++++|...+....
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  210 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  210 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            877765431    1111 12344555566666666666666554433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.29  E-value=5.1e-10  Score=96.30  Aligned_cols=166  Identities=11%  Similarity=-0.049  Sum_probs=94.4

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459          208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD  287 (510)
Q Consensus       208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  287 (510)
                      +...|..+-..|.+.|++++|...|++..+.. +-+..+|..+...|.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            34455555555555566666666665555443 234555555555555555555555555555443222 3344444445


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccH
Q 010459          288 AYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGI  367 (510)
Q Consensus       288 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  367 (510)
                      .+...++++.+.+.+....+                                   ..+.+...|..+...+...|+.++|
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~-----------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A  126 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIA-----------------------------------LNTVYADAYYKLGLVYDSMGEHDKA  126 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-----------------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH-----------------------------------hCccchHHHHHHHHHHHHhCCchhH
Confidence            55555555555555555444                                   3444444455555555555555666


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          368 DSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       368 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      ++.|++..+..+. +..+|..+...|.+.|++++|.+.|++..+
T Consensus       127 ~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          127 IEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            6666666665433 566777777777777777777777777765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.29  E-value=1.4e-08  Score=104.75  Aligned_cols=135  Identities=8%  Similarity=0.020  Sum_probs=96.9

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL---MEEAVRAFQEMEGFA-LKPSLEI  176 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~~~~~~  176 (510)
                      -|..+|..++..+.+.+.++.++.+|+.+..  -++.....|...+..-.+.|+   ++.+..+|++..... ..|++..
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L  141 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL  141 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence            4667888999988888889999999998884  566777888888888888888   999999999988763 1378888


Q ss_pred             HHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 010459          177 YNSIIHGYSKIGKF--------NEALLFLNEMKE-MNL-SPQ-SDTYDGLIQAYGK---------YKMYDEIDMCLKMMK  236 (510)
Q Consensus       177 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~-~~t~~~li~~~~~---------~g~~~~a~~~~~~m~  236 (510)
                      |..-+.-..+.++.        +.+.++|+..+. .|. .|+ ...|...+.....         .++++.+.++|++..
T Consensus       142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence            88877766555543        334467776543 466 554 4677777765432         335677888888877


Q ss_pred             h
Q 010459          237 L  237 (510)
Q Consensus       237 ~  237 (510)
                      .
T Consensus       222 ~  222 (679)
T 4e6h_A          222 C  222 (679)
T ss_dssp             T
T ss_pred             h
Confidence            5

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=2.4e-10  Score=114.31  Aligned_cols=214  Identities=10%  Similarity=0.012  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010459          155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF-NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLK  233 (510)
Q Consensus       155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~  233 (510)
                      +++++..+++..... +.+...|..+...|...|++ ++|++.|++..+.... +..+|..+...|.+.|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555555554432 22455566666666666666 6666666665554321 35555666666666666666666666


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc--------CChh
Q 010459          234 MMKLDGCSPDHITYNLLIQEFACA---------GLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF--------GMLD  296 (510)
Q Consensus       234 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~  296 (510)
                      +..+.  .|+...|..+-..|...         |++++|.+.|++..+.... +...|..+..+|...        |+++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            65544  24455555555555555         5555555555555543211 344455555555544        4455


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcC---CchHHHHHHHHHhhhhcccccHHHHHHH
Q 010459          297 KMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIG---RTELVWCLRLLSHACLLSHRGIDSVVRE  373 (510)
Q Consensus       297 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  373 (510)
                      +|.+.|++..+                                   ..+   .+...|..+...|...|+.++|.+.|++
T Consensus       239 ~A~~~~~~al~-----------------------------------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  283 (474)
T 4abn_A          239 QALSAYAQAEK-----------------------------------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ  283 (474)
T ss_dssp             HHHHHHHHHHH-----------------------------------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----------------------------------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555544444                                   333   3344444444444444445555555555


Q ss_pred             HHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhh
Q 010459          374 MESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSEL  409 (510)
Q Consensus       374 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  409 (510)
                      ..+.... +...+..+...+...|++++|++.+.++
T Consensus       284 al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          284 AAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5544332 3445555555555555555555544333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.27  E-value=2.6e-10  Score=114.03  Aligned_cols=212  Identities=8%  Similarity=-0.044  Sum_probs=176.3

Q ss_pred             CCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010459          118 RSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLM-EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLF  196 (510)
Q Consensus       118 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  196 (510)
                      .++++.+.++...  ...+.+...+..+-..|...|++ ++|++.|++..+.. +.+...|..+...|.+.|++++|.+.
T Consensus        83 ~~~~al~~l~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVL--GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3566666666554  23345788899999999999999 99999999998774 33688999999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CC
Q 010459          197 LNEMKEMNLSPQSDTYDGLIQAYGKY---------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA--------GL  259 (510)
Q Consensus       197 ~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~  259 (510)
                      |++..+..  |+..++..+...|.+.         |++++|...|++..+.. +.+...|..+...|...        |+
T Consensus       160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence            99998854  7789999999999999         99999999999998765 45788999999999999        99


Q ss_pred             HHHHHHHHHHHHHCCCc--cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459          260 LKRMEGTYKSMLTKRMH--LRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       260 ~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      +++|++.|++..+....  -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~  314 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES  314 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999876321  378899999999999999999999999998764 33455667777777777766665544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.26  E-value=2.9e-10  Score=110.50  Aligned_cols=226  Identities=7%  Similarity=-0.076  Sum_probs=147.5

Q ss_pred             HHhcCCCCcHHHHHHHHHhhc-CC--CCCHHHHHHHHHHHH--hcCCHHHHH-----------HHHHHHHhCCCCCCHHH
Q 010459          113 LKNSSRSRQIPQVFDMWKNIE-KS--RINEFNSQKIIGMLC--EEGLMEEAV-----------RAFQEMEGFALKPSLEI  176 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~-~~--~~~~~~~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~g~~~~~~~  176 (510)
                      +.+.+++++|.++.+.+.+.. ..  .++...|-.++..-.  -.++++.+.           +.++.+...  .++...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence            346789999999998886532 22  233344444443221  224444444           666666532  111111


Q ss_pred             ------HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CC---
Q 010459          177 ------YNSIIHGYSKIGKFNEALLFLNEMKEM----NLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GC---  240 (510)
Q Consensus       177 ------~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---  240 (510)
                            |......+...|++++|++.|++..+.    +-.+ ...++..+...|...|++++|...+++..+.  ..   
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence                  222555677889999999999998764    1111 3457888888999999999999998887642  10   


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC
Q 010459          241 -SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RT  310 (510)
Q Consensus       241 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~  310 (510)
                       .....+++.+-..|...|++++|.+.|++..+.    +-.+ ...++..+...|...|++++|.+.+.+..+.    +.
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence             112456777888899999999999999887643    2111 1247778888889999999999999888762    22


Q ss_pred             -CCCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459          311 -PLKEDLVRKLAEVYIKNYMFSRLDDLGDDL  340 (510)
Q Consensus       311 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  340 (510)
                       +....++..+...|.+.|++++|...+...
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             333456677777777777777777765443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.25  E-value=7.5e-10  Score=109.93  Aligned_cols=376  Identities=8%  Similarity=-0.043  Sum_probs=228.9

Q ss_pred             HHHHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCC---CcHHHHHHHHHhhcCCCCCHHHHH
Q 010459           67 LVESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRS---RQIPQVFDMWKNIEKSRINEFNSQ  143 (510)
Q Consensus        67 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~  143 (510)
                      +...+.+.|++.+++..+.       ...+.+   ++..+..+-..|...|+.   ++|.+.|+...+  .   +...+.
T Consensus         9 la~~~~~~g~~~~A~~~~~-------~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~---~~~A~~   73 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQ-------QLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--T---SPRAQA   73 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHT---CCTGGGTCC---------------------------------CHH
T ss_pred             HHHHHHhCCCHHHHHHHHH-------HHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--C---CHHHHH
Confidence            3445567788888888887       333333   223333444555667777   899999987764  2   555566


Q ss_pred             HHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459          144 KIIGMLCEEG-----LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF---NEALLFLNEMKEMNLSPQSDTYDGL  215 (510)
Q Consensus       144 ~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~t~~~l  215 (510)
                      .|-..+...|     ++++|+..|++..+.|..   ..+..|...|...+..   .++.+.+....+.|   +...+..|
T Consensus        74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~L  147 (452)
T 3e4b_A           74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQ  147 (452)
T ss_dssp             HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHH
T ss_pred             HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHH
Confidence            6666455554     889999999999987643   2677777777776654   34555566555555   34566777


Q ss_pred             HHHHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 010459          216 IQAYGKYKMYDE----IDMCLKMMKLDGCSPDHITYNLLIQEFACAG---LLKRMEGTYKSMLTKRMHLRSSTMVAILDA  288 (510)
Q Consensus       216 i~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  288 (510)
                      ...|...+.++.    +..+++...    ..+...+..+-..|...|   +.++|++.|++..+.|.. +...+..+-..
T Consensus       148 g~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~  222 (452)
T 3e4b_A          148 VLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARV  222 (452)
T ss_dssp             HHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence            778887775544    444454444    333447888888898999   899999999999888743 55555566666


Q ss_pred             HHhc----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhh
Q 010459          289 YMNF----GMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV-Y--IKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACL  361 (510)
Q Consensus       289 ~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  361 (510)
                      |...    ++.++|.+.|+... .   -+...+..|-.+ |  ...+++++|...++.....  .+...+..+...|. .
T Consensus       223 y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~  295 (452)
T 3e4b_A          223 LGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E  295 (452)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H
T ss_pred             HhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c
Confidence            6554    68999999999887 3   345566666666 3  4578899999988876644  36777777777776 5


Q ss_pred             c-----ccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChhHHHHHHHhhhhCCCCCCHHHHHHHHH-hhhhc
Q 010459          362 L-----SHRGIDSVVREMESAKVRWNVTTANIILLAYLK----MKDFKHLRVLLSELPTRHVKPDIVTIGILYD-ARRIG  431 (510)
Q Consensus       362 ~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~-~~~~~  431 (510)
                      |     +.++|.+.|++.. .   -+...+..|-..|.+    ..+.++|...|++..+.|...-......+.. +....
T Consensus       296 G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~  371 (452)
T 3e4b_A          296 GKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTK  371 (452)
T ss_dssp             CSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBC
T ss_pred             CCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCC
Confidence            5     7888999998877 3   266677777777766    3489999999999988774222222222221 23345


Q ss_pred             CccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcC
Q 010459          432 FDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLE  480 (510)
Q Consensus       432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  480 (510)
                      .+..+|..++++....+.+...... ..+......+..++|.++.++..
T Consensus       372 ~d~~~A~~~~~~A~~~g~~~a~~~l-~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          372 PDPLNAYVFSQLAKAQDTPEANDLA-TQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHH
Confidence            6889999999987555433211111 11222233456666666665443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.24  E-value=2.2e-10  Score=107.28  Aligned_cols=241  Identities=13%  Similarity=0.092  Sum_probs=170.0

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-
Q 010459          103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE------KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF------A-  169 (510)
Q Consensus       103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-  169 (510)
                      ..++..+...+...|++++|.++++.+.+..      .......++..+...|...|++++|...|++..+.      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            3577888899999999999999999887521      23334567888999999999999999999988754      1 


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 010459          170 LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM------NLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----  238 (510)
Q Consensus       170 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----  238 (510)
                      ......+|..+...|...|++++|.+.|++..+.      +-.| ...++..+...|.+.|++++|...|++..+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1224578899999999999999999999998764      2222 4567888999999999999999999998753    


Q ss_pred             --CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCccCH-------HHHHHHHHHHHhcCChhHHHHH
Q 010459          239 --GCS-PDHITYNLLIQEFACAGLLKRMEGTYKSMLTK-------RMHLRS-------STMVAILDAYMNFGMLDKMEKF  301 (510)
Q Consensus       239 --g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~  301 (510)
                        +-. ....++..+...|...|++++|.+.|++..+.       ...+..       ..+..+...+...+.+.++...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              112 23567888999999999999999999998753       111221       2222333334444555566666


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhc
Q 010459          302 YKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRI  344 (510)
Q Consensus       302 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  344 (510)
                      +....... +....++..+...|.+.|++++|...++......
T Consensus       267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            66555432 3345677889999999999999999988776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.22  E-value=1.8e-09  Score=92.35  Aligned_cols=164  Identities=13%  Similarity=0.050  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      ..+..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|.+.+++..+.. ..+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            345556666667777777777777666543 2356667777777777777777777777766543 22556666677777


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHH
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME  299 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  299 (510)
                      ...|++++|...|+++.+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777766543 3456666667777777777777777777766553 224566666777777777777777


Q ss_pred             HHHHHHHh
Q 010459          300 KFYKRLLN  307 (510)
Q Consensus       300 ~~~~~m~~  307 (510)
                      +.++...+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=1.5e-09  Score=105.32  Aligned_cols=299  Identities=7%  Similarity=-0.058  Sum_probs=159.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HhcCChHHHH-----------HHHHHHHHCCCCCCHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGF--ALKPS--LEIYNSIIHGY--SKIGKFNEAL-----------LFLNEMKEMNLSPQSDT  211 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~g~~p~~~t  211 (510)
                      +.+.+++++|..+++++.+.  .++.|  ...|-.++..-  ...++.+.+.           +.++.+....  ++...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            34567888888888777543  12223  33334443321  1223334444           5555554321  11111


Q ss_pred             HHH------HHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-
Q 010459          212 YDG------LIQAYGKYKMYDEIDMCLKMMKLD----GCSP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RM-  275 (510)
Q Consensus       212 ~~~------li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-  275 (510)
                      +..      ....+...|++++|...|++..+.    +-.+ ...+|..+-..|...|++++|...+++..+.    +- 
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence            111      334455667777777777776542    1011 2345666666677777777777777665532    11 


Q ss_pred             cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHH
Q 010459          276 HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT-PLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCL  353 (510)
Q Consensus       276 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  353 (510)
                      .| ...++..+...|...|++++|.+.+....+..- .++..                              ....++..
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~~~  229 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ------------------------------LMGRTLYN  229 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------------------HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH------------------------------HHHHHHHH
Confidence            11 124555666666667777777776666553210 01110                              00123444


Q ss_pred             HHHHhhhhcccccHHHHHHHHHH----CCC-CcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCC---CCCC-HHHHHHH
Q 010459          354 RLLSHACLLSHRGIDSVVREMES----AKV-RWNVTTANIILLAYLKMKDFKHLRVLLSELPTRH---VKPD-IVTIGIL  424 (510)
Q Consensus       354 li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~~t~~~l  424 (510)
                      +...|...|+.++|.+.|++..+    .+. +....++..+...|.+.|++++|...+++..+..   -.|. ...+..+
T Consensus       230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  309 (383)
T 3ulq_A          230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL  309 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455555555555555555544    122 2245667777778888888888888887765421   0121 1223444


Q ss_pred             HHhhhhcCc---cchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          425 YDARRIGFD---GTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       425 i~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      -..+...|+   .++|+.++++....  +.....+..+...|.+.|++++|.+.+++..+
T Consensus       310 ~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          310 KSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445666666   77778887776322  11223344566778888888888888776544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.18  E-value=1.9e-09  Score=92.29  Aligned_cols=165  Identities=10%  Similarity=0.017  Sum_probs=143.4

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      ..|..+...+...|++++|.+.++.+.+  ..+.+...+..+...|...|++++|...|++..+.. +.+...|..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   85 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3566778889999999999999997753  334577889999999999999999999999998764 3478889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM  263 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  263 (510)
                      +...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999998764 3477889999999999999999999999988765 45788999999999999999999


Q ss_pred             HHHHHHHHHC
Q 010459          264 EGTYKSMLTK  273 (510)
Q Consensus       264 ~~~~~~m~~~  273 (510)
                      .+.+++..+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.13  E-value=1.3e-07  Score=97.46  Aligned_cols=152  Identities=8%  Similarity=0.002  Sum_probs=113.6

Q ss_pred             CCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHH
Q 010459          119 SRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK---FNEALL  195 (510)
Q Consensus       119 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~  195 (510)
                      ..+-...|+....  ..+-|..+|..++..+.+.+.++.+..+|+.+... .+.+...|..-+..-.+.++   .+.+.+
T Consensus        48 ~~d~i~~lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           48 ESDVIGKLNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CSCHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            4445555555543  34579999999999999999999999999999876 35577889999999889998   999999


Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHH--------
Q 010459          196 FLNEMKEMN-LSPQSDTYDGLIQAYGKYKMY--------DEIDMCLKMMKL-DGC-SP-DHITYNLLIQEFA--------  255 (510)
Q Consensus       196 ~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------  255 (510)
                      +|++.+... ..|+...|...+....+.++.        +...++|+.... .|. .+ +...|...|.-..        
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            999998764 248888998888776665553        345578887554 466 45 4678888887543        


Q ss_pred             -HcCCHHHHHHHHHHHHHC
Q 010459          256 -CAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       256 -~~g~~~~A~~~~~~m~~~  273 (510)
                       ..++++.+..+|+.....
T Consensus       205 eeq~~~~~~R~iy~raL~i  223 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQ  223 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTS
T ss_pred             HHHhHHHHHHHHHHHHHhC
Confidence             344578888999888753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=2.7e-08  Score=96.03  Aligned_cols=159  Identities=12%  Similarity=-0.012  Sum_probs=72.9

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHH
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEF----NSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSL----EIYNSIIH  182 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~  182 (510)
                      .+...|++++|...++..... ....+..    +++.+...|...|++++|...+++..+... .++.    .+++.+..
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            344456666666666555431 1111111    334444555555666666666555442210 0111    22344445


Q ss_pred             HHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHH
Q 010459          183 GYSKIGKFNEALLFLNEMKEM----NLS--P-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS----PDHITYNLLI  251 (510)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li  251 (510)
                      .+...|++++|.+.+++..+.    +..  | ...++..+...+...|++++|...+++..+....    ....+|..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            555556666665555555331    111  1 1223344555555555555555555554432111    0123344445


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 010459          252 QEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       252 ~~~~~~g~~~~A~~~~~~m~  271 (510)
                      ..+...|++++|...+++..
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            55555555555555555544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.09  E-value=1.4e-09  Score=100.03  Aligned_cols=228  Identities=12%  Similarity=0.060  Sum_probs=155.4

Q ss_pred             HhcCCCCcHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 010459          114 KNSSRSRQIPQVFDMWKNIE------KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF------AL-KPSLEIYNSI  180 (510)
Q Consensus       114 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~l  180 (510)
                      ...|++++|.+.|+...+..      ..+....++..+...|...|++++|+..|++..+.      +- +....+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            35688888888888766521      11234567889999999999999999999988754      11 2235688999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEM------NL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD------G-CSPDHIT  246 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~  246 (510)
                      ...|...|++++|.+.|++..+.      .- .....++..+...|...|++++|...|++..+.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998764      11 224667888999999999999999999998754      1 1224567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCccCH-HHHHHHHHHHHhcCChhHHHHHHHHHH----hcC--CCC
Q 010459          247 YNLLIQEFACAGLLKRMEGTYKSMLTK-------RMHLRS-STMVAILDAYMNFGMLDKMEKFYKRLL----NSR--TPL  312 (510)
Q Consensus       247 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~--~~~  312 (510)
                      +..+...|...|++++|.+.|++..+.       ...+.. ..+..+.......+....+.. +....    ..+  .+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence            888999999999999999999988753       122222 223333333333222222222 11111    111  112


Q ss_pred             CHHHHHHHHHHHHhhcchhHHHHHHHHHHh
Q 010459          313 KEDLVRKLAEVYIKNYMFSRLDDLGDDLAS  342 (510)
Q Consensus       313 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  342 (510)
                      ...++..+...|.+.|++++|...++....
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677788888999999999888776543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.09  E-value=7.1e-09  Score=108.08  Aligned_cols=165  Identities=13%  Similarity=0.128  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA  218 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  218 (510)
                      ...|+.|-..|.+.|++++|++.|++..+.. +-+..+|+.+...|.+.|++++|++.|++..+.... +..+|..+...
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4567777777777888888888887777653 224677777777888888888888888777764322 46677777778


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      |.+.|++++|.+.|++..+.. +-+...|+.+-..|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence            888888888888887777654 335677777778888888888888888877765322 466777777788888888777


Q ss_pred             HHHHHHHHh
Q 010459          299 EKFYKRLLN  307 (510)
Q Consensus       299 ~~~~~~m~~  307 (510)
                      .+.+++..+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.07  E-value=3.5e-08  Score=95.20  Aligned_cols=270  Identities=10%  Similarity=-0.034  Sum_probs=191.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHH
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SPQ----SDTY  212 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~  212 (510)
                      .......+...|++++|...+++........+.    .+++.+...+...|++++|.+.+++..+... .++    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            344455677889999999999998775422232    2567777888899999999999988765311 112    2345


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc----cCHHH
Q 010459          213 DGLIQAYGKYKMYDEIDMCLKMMKLD----GCS--P-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH----LRSST  281 (510)
Q Consensus       213 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t  281 (510)
                      ..+...+...|++++|...+++..+.    +..  | ....+..+-..+...|++++|...+++.......    ....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            67888899999999999999887642    222  2 2445666778899999999999999987753211    12456


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C-HHHHH----HHHHHHHhhcchhHHHHHHHHHHhhcCCc----hHHH
Q 010459          282 MVAILDAYMNFGMLDKMEKFYKRLLNSRTPL-K-EDLVR----KLAEVYIKNYMFSRLDDLGDDLASRIGRT----ELVW  351 (510)
Q Consensus       282 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~-~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~  351 (510)
                      +..+...+...|++++|...+++..+..-.+ . .....    .....+...|+++++...+.......+.+    ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            7788888999999999999999887532111 1 12111    33455778999999999877765433221    2346


Q ss_pred             HHHHHHhhhhcccccHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          352 CLRLLSHACLLSHRGIDSVVREMESA----KVRWNV-TTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       352 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      ..+...+...|+.++|.+.+++....    |..++. ..+..+..++...|+.++|...+++...
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            67778888999999999998877543    222233 3566677788999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.06  E-value=1.2e-09  Score=100.57  Aligned_cols=157  Identities=19%  Similarity=0.150  Sum_probs=117.2

Q ss_pred             hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCC-CCHHHHHHHH
Q 010459          151 EEGLMEEAVRAFQEMEG-------FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM------NLS-PQSDTYDGLI  216 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~-p~~~t~~~li  216 (510)
                      ..|++++|+..|++..+       ...+....+|..+...|...|++++|++.|++..+.      +-. ....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            34566666655555443       222234678889999999999999999999988654      222 2456788899


Q ss_pred             HHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCcc-CHHHH
Q 010459          217 QAYGKYKMYDEIDMCLKMMKLD------G-CSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK------RMHL-RSSTM  282 (510)
Q Consensus       217 ~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~  282 (510)
                      ..|...|++++|...|++..+.      . .+....+|..+...|...|++++|.+.|++..+.      +-.| ...++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999887653      1 1234667888888999999999999999888754      1122 35678


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          283 VAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       283 ~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      ..+...|...|++++|.+.+++..+
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888889999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.05  E-value=2.3e-08  Score=96.77  Aligned_cols=311  Identities=10%  Similarity=-0.064  Sum_probs=169.6

Q ss_pred             CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HhcCChHHHH---------HH
Q 010459          134 KSRINEFNSQKIIGML--CEEGLMEEAVRAFQEMEGF--ALKPS--LEIYNSIIHGY--SKIGKFNEAL---------LF  196 (510)
Q Consensus       134 ~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~a~---------~~  196 (510)
                      ...|+..+-+.|-+.|  .+.+++++|..+++++.+.  .++.|  ...|-.++..-  .-.+....+.         +.
T Consensus         5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~   84 (378)
T 3q15_A            5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL   84 (378)
T ss_dssp             -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence            3456667777777777  7788888888888877542  12222  33344444321  1111211222         44


Q ss_pred             HHHHHHCCCCCC-HH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 010459          197 LNEMKEMNLSPQ-SD---TYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SPD----HITYNLLIQEFACAGLLKRMEGTY  267 (510)
Q Consensus       197 ~~~m~~~g~~p~-~~---t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~  267 (510)
                      ++.+.......+ ..   .+-.....+...|++++|...|++..+... .++    ..++..+-..|...|+++.|...+
T Consensus        85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~  164 (378)
T 3q15_A           85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI  164 (378)
T ss_dssp             HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            444432111101 00   112233345677888888888887764310 122    446667777788888888888888


Q ss_pred             HHHHHC----C-Ccc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhhcchhHHHHH
Q 010459          268 KSMLTK----R-MHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPL-KEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       268 ~~m~~~----g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      ++..+.    + ..+ ...++..+...|...|++++|.+.+....+.    +..+ ...++..+...|...|++++|...
T Consensus       165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~  244 (378)
T 3q15_A          165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH  244 (378)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            776532    1 111 2356677777788888888888888776542    1110 112334444445555555444444


Q ss_pred             HHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHH-----CCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMES-----AKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                                                        |++..+     .... ...++..+...|.+.|++++|...+++..+
T Consensus       245 ----------------------------------~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  289 (378)
T 3q15_A          245 ----------------------------------FQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD  289 (378)
T ss_dssp             ----------------------------------HHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                              444333     2222 255666677777777777777777777654


Q ss_pred             CCC---CCC-HHHHHHHHHhhhhcCc---cchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCC
Q 010459          412 RHV---KPD-IVTIGILYDARRIGFD---GTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEP  481 (510)
Q Consensus       412 ~g~---~p~-~~t~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  481 (510)
                      ..-   .|. ...+..+-..+...++   ..+|+..+++....  +.....+..+...|.+.|++++|.+.|++..+
T Consensus       290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            211   122 2334334334555555   67777777764322  11122344566677777888887777776543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.05  E-value=5.6e-08  Score=86.61  Aligned_cols=150  Identities=15%  Similarity=0.076  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010459          137 INEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLI  216 (510)
Q Consensus       137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  216 (510)
                      .|+..+...-..|.+.|++++|+..|++..+....++...|..+...+.+.|++++|++.|++..+.... +..+|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4556677777777778888888888887776653356677777777777888888888888877765432 456677777


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC---HHHHHHHH
Q 010459          217 QAYGKYKMYDEIDMCLKMMKLDGCSPDH-------ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR---SSTMVAIL  286 (510)
Q Consensus       217 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll  286 (510)
                      ..|.+.|++++|...|++..+.. +.+.       ..|..+-..+...|++++|.+.|++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            77777888888888887776643 2233       34566666677777777777777777654  333   34444555


Q ss_pred             HHHH
Q 010459          287 DAYM  290 (510)
Q Consensus       287 ~~~~  290 (510)
                      ..|.
T Consensus       161 ~~~~  164 (228)
T 4i17_A          161 VLFY  164 (228)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.03  E-value=2.5e-08  Score=96.51  Aligned_cols=228  Identities=8%  Similarity=-0.071  Sum_probs=145.3

Q ss_pred             HhcCCCCcHHHHHHHHHhhc-CCC--CCHHHHHHHHHHHHh--cCCHHHHH---------HHHHHHHhCCCCCC-H---H
Q 010459          114 KNSSRSRQIPQVFDMWKNIE-KSR--INEFNSQKIIGMLCE--EGLMEEAV---------RAFQEMEGFALKPS-L---E  175 (510)
Q Consensus       114 ~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~~li~~~~~--~g~~~~A~---------~~~~~m~~~g~~~~-~---~  175 (510)
                      ...+++++|.++++.+.+.. ...  ++...|-.|+..-.+  .+.++.+.         +.++.+.......+ .   .
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~  102 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY  102 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence            57889999999998876521 222  333334444432111  12222222         55555543210101 1   1


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-C-CCH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SPQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GC-S-PDH  244 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~-~~~  244 (510)
                      .|......+...|++++|++.|++..+.-. .+|    ..++..+...|...|+++.|...+++..+.    +- . ...
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            233344456788999999999999875421 123    457788888999999999999998887642    10 1 124


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHH
Q 010459          245 ITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS----RTPLKED  315 (510)
Q Consensus       245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~  315 (510)
                      .+++.+-..|...|++++|.+.|++..+.    +..+ ...++..+-..|...|++++|.+.+.+..+.    +.+....
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            57778888999999999999999887642    2221 2356778888899999999999999988761    2222355


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459          316 LVRKLAEVYIKNYMFSRLDDLGDDLA  341 (510)
Q Consensus       316 ~~~~li~~~~~~~~~~~a~~~~~~~~  341 (510)
                      ++..+...|.+.|++++|...++...
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al  288 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGL  288 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            66677777777777777776655544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.01  E-value=2.3e-08  Score=80.31  Aligned_cols=129  Identities=18%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG  220 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  220 (510)
                      .|..+...|...|++++|..+|+++.+.+ +.+...|..+...+...|++++|.+.|+++...+. .+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence            34455566666666666666666665443 22455566666666666666666666666655432 24455556666666


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                      +.|++++|.+.|+++.+.. +.+...|..+...+.+.|++++|.+.|+++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            6666666666666655443 23455555666666666666666666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.00  E-value=2.6e-08  Score=103.89  Aligned_cols=164  Identities=12%  Similarity=0.040  Sum_probs=129.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      +..+|+.|-..|.+.|++++|++.|++..+.... +..+|..|-..|.+.|++++|...|++..+.. +-+...|..+-.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4678888999999999999999999988875422 57788888889999999999999998887764 346778888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH
Q 010459          253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR  332 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  332 (510)
                      .|.+.|++++|++.|++..+.... +...|..+..+|...|++++|++.|++.++.. +-+...+..+...|...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            899999999999999888775422 56788888888888889999888888888754 3356677777777777777777


Q ss_pred             HHHHHHHH
Q 010459          333 LDDLGDDL  340 (510)
Q Consensus       333 a~~~~~~~  340 (510)
                      |.+.++..
T Consensus       164 A~~~~~ka  171 (723)
T 4gyw_A          164 YDERMKKL  171 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.00  E-value=8.8e-08  Score=85.31  Aligned_cols=154  Identities=12%  Similarity=0.007  Sum_probs=120.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL  250 (510)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  250 (510)
                      ..|+..|......+.+.|++++|++.|++..+....++...+..+...+.+.|++++|...|++..+.. +.+...|..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            346788888889999999999999999998887654677888888899999999999999999988765 3366788888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHH
Q 010459          251 IQEFACAGLLKRMEGTYKSMLTKRMHLRS-------STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK---EDLVRKL  320 (510)
Q Consensus       251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l  320 (510)
                      ...|...|++++|.+.|++..+.... +.       ..|..+-..+...|++++|.+.++...+..  |+   ...+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHH
Confidence            89999999999999999998875322 33       457777777888889999999998887653  43   3455555


Q ss_pred             HHHHHhhc
Q 010459          321 AEVYIKNY  328 (510)
Q Consensus       321 i~~~~~~~  328 (510)
                      ...|...|
T Consensus       160 ~~~~~~~~  167 (228)
T 4i17_A          160 GVLFYNNG  167 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.96  E-value=4.9e-08  Score=78.28  Aligned_cols=132  Identities=18%  Similarity=0.221  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF  254 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  254 (510)
                      ..|..+...+...|++++|.++|+++.+.+. .+..++..+...+...|++++|...|+++.+.. +.+...|..+...+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence            3577888889999999999999999877543 367788888888999999999999999987764 45677888888899


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      ...|++++|.+.++++..... .+..++..+...+...|++++|.+.+..+.+..
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            999999999999998887642 356778888888999999999999998887643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.94  E-value=2.3e-07  Score=85.19  Aligned_cols=145  Identities=8%  Similarity=-0.011  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       158 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      |+..|++..+.+ .++..++..+..++...|++++|++++.+-...|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566666665544 34555555666777777777777777776655443 1245566667777777777777777777776


Q ss_pred             hCCCCC-----CHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          237 LDGCSP-----DHITYNLLIQEF--ACAG--LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       237 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      +.  .|     +..+...+..++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|+++++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            54  34     244444555452  2223  677777777776544  24433334444466677777777777765543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.84  E-value=9.2e-07  Score=81.18  Aligned_cols=180  Identities=10%  Similarity=0.043  Sum_probs=137.2

Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459          122 IPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSLEIYNSIIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       122 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (510)
                      |...|+.... .+ .++..++..+..++...|++++|++++.+....|. .-+...+-.++..+.+.|+++.|.+.+++|
T Consensus        85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6777776654 22 56666777888999999999999999999876653 236788889999999999999999999999


Q ss_pred             HHCCCCC-----CHHHHHHHHHHHHc--cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          201 KEMNLSP-----QSDTYDGLIQAYGK--YK--MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       201 ~~~g~~p-----~~~t~~~li~~~~~--~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      .+.  .|     +..+...|..++..  .|  +..+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            874  56     35666666666333  34  899999999999765  4553344455558999999999999999776


Q ss_pred             HCC-----C---cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          272 TKR-----M---HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       272 ~~g-----~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      +.-     .   .| |..++..+|......|+  ++.+++.++.+..
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            531     1   23 55666577777777786  8899999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.80  E-value=1.6e-07  Score=87.22  Aligned_cols=199  Identities=7%  Similarity=-0.093  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhc---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIE---KSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS----LE  175 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~  175 (510)
                      .|......|...|++++|.+.|.......   +..++ ..+|+.+..+|.+.|++++|+..|++..+.... .+    ..
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34445666778888888888887665431   21222 457778888888888888888888776543100 01    34


Q ss_pred             HHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-----
Q 010459          176 IYNSIIHGYSKI-GKFNEALLFLNEMKEMNLSP-Q----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH-----  244 (510)
Q Consensus       176 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p-~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----  244 (510)
                      +|+.+...|... |++++|++.|++..+..... +    ..+++.+...|.+.|++++|...|++..+.......     
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            677777777775 88888888887765431100 1    345677777788888888888888877765322211     


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH------HHHHHHHHHHH--hcCChhHHHHHHHHH
Q 010459          245 -ITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRS------STMVAILDAYM--NFGMLDKMEKFYKRL  305 (510)
Q Consensus       245 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~--~~g~~~~a~~~~~~m  305 (510)
                       ..|..+..++...|++++|...|++..+.  .|+.      ..+..++.++.  ..+++++|...|+.+
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence             14566666777778888888887776643  2221      12344455553  334555566555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.77  E-value=3.2e-07  Score=85.17  Aligned_cols=69  Identities=7%  Similarity=-0.019  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccC-HHHHHHHHHHHHhcCChhHH
Q 010459          224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHLR-SSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a  298 (510)
                      ++++|...|++.               ...|...|++++|.+.|++..+.    |-.++ ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777766               23566778888888887766532    32222 45777777888888888888


Q ss_pred             HHHHHHHHh
Q 010459          299 EKFYKRLLN  307 (510)
Q Consensus       299 ~~~~~~m~~  307 (510)
                      ...+++..+
T Consensus        97 ~~~~~~Al~  105 (292)
T 1qqe_A           97 VDSLENAIQ  105 (292)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.77  E-value=8.7e-07  Score=80.63  Aligned_cols=168  Identities=11%  Similarity=0.110  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNL-SP-QSDTYDG  214 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~t~~~  214 (510)
                      ..+-.+...+.+.|++++|...|+++.+... .+   ...|..+..+|.+.|++++|+..|++..+... .| ...++..
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            3333444445555555555555555554321 11   34455555555555555555555555544321 11 1233444


Q ss_pred             HHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHH
Q 010459          215 LIQAYGK--------YKMYDEIDMCLKMMKLDGCSPDHIT-----------------YNLLIQEFACAGLLKRMEGTYKS  269 (510)
Q Consensus       215 li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~-----------------~~~li~~~~~~g~~~~A~~~~~~  269 (510)
                      +..++.+        .|++++|...|++..+.. +.+...                 +..+...|.+.|++++|+..|++
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4444444        555555555555554432 111112                 23455667777777777777777


Q ss_pred             HHHCCCcc--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcC
Q 010459          270 MLTKRMHL--RSSTMVAILDAYMNF----------GMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       270 m~~~g~~p--~~~t~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~  309 (510)
                      ..+.....  ....+..+..+|...          |++++|...++.+.+..
T Consensus       174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            76543211  234555666666655          66777777777776643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.75  E-value=7.2e-07  Score=78.21  Aligned_cols=136  Identities=15%  Similarity=0.014  Sum_probs=75.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc
Q 010459          285 ILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH  364 (510)
Q Consensus       285 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  364 (510)
                      +..++...|++++|...++...+.. +-+...+..+...|...|++++|...+.......+.+..+|..+...|...|..
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            4555555666666666666555543 234455555555666666666666666655555556666666665555444432


Q ss_pred             --ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHH
Q 010459          365 --RGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILY  425 (510)
Q Consensus       365 --~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li  425 (510)
                        +.+...++....  +.|....+...-.++...|++++|...|++..+  +.|+......+.
T Consensus       139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~  197 (208)
T 3urz_A          139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence              233444444332  223333334444556667888889998888886  457765544433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.71  E-value=8.2e-07  Score=77.82  Aligned_cols=131  Identities=10%  Similarity=0.024  Sum_probs=72.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459          180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL  259 (510)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  259 (510)
                      +...|.+.|++++|+..|++..+.... +...+..+...|.+.|++++|...|++..+.. +.+..+|..+-..|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence            666666777777777777776664322 55666667777777777777777777766553 3355666666666554443


Q ss_pred             --HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 010459          260 --LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDL  316 (510)
Q Consensus       260 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  316 (510)
                        .+.+...++....  ..|....+...-.++...|++++|...|++.++.  .|+...
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~  192 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA  192 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence              2333444443321  1222223333334445566777777777766653  355433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=3.1e-06  Score=74.34  Aligned_cols=178  Identities=8%  Similarity=-0.116  Sum_probs=142.5

Q ss_pred             CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHH
Q 010459          120 RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG----KFNEALL  195 (510)
Q Consensus       120 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~  195 (510)
                      .+|.+.|+...+ .   -+...+..|-..|...+++++|+..|++..+.|   +...+..|-..|.. +    +.++|++
T Consensus         3 ~eA~~~~~~aa~-~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~   74 (212)
T 3rjv_A            3 TEPGSQYQQQAE-A---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ   74 (212)
T ss_dssp             -CTTHHHHHHHH-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred             chHHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence            356777777765 2   577888888899999999999999999998764   67788888888887 6    8999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 010459          196 FLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCS-PDHITYNLLIQEFAC----AGLLKRMEGT  266 (510)
Q Consensus       196 ~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~  266 (510)
                      .|++..+.|   +..++..|-..|..    .+++++|...|++..+.|.. .+...+..|-..|..    .+++++|+..
T Consensus        75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            999998876   67788888888887    88999999999999876521 126788888888888    7899999999


Q ss_pred             HHHHHHCCCccCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 010459          267 YKSMLTKRMHLRSSTMVAILDAYMNF-G-----MLDKMEKFYKRLLNSRT  310 (510)
Q Consensus       267 ~~~m~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~~  310 (510)
                      |++..+.+  .+...+..|-..|... |     +.++|.+.++...+.|.
T Consensus       152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            99988762  2444666676777653 3     89999999999888774

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.69  E-value=2.8e-07  Score=96.34  Aligned_cols=174  Identities=10%  Similarity=-0.064  Sum_probs=133.9

Q ss_pred             HccCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459          220 GKYKMYDEIDMCLKMMK--------LDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN  291 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  291 (510)
                      ...|++++|...|++..        +.. +.+...|..+...|.+.|++++|++.|++..+.... +...|..+-.++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            67889999999999887        332 346678888888999999999999999998875322 66788888888999


Q ss_pred             cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHH
Q 010459          292 FGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVV  371 (510)
Q Consensus       292 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  371 (510)
                      .|++++|.+.|++..+.. +-+...+..+..+|.+.|++++ ...++......+.+...|..+...+...|+.++|.+.|
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999988765 3356777888888888888888 88888888888888888888888888888888888888


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010459          372 REMESAKVRWNVTTANIILLAYLKMKD  398 (510)
Q Consensus       372 ~~m~~~g~~p~~~~~~~li~~~~~~g~  398 (510)
                      ++..+.... +...|..+..++...|+
T Consensus       558 ~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            877765433 35566666666655444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.69  E-value=2.6e-05  Score=72.19  Aligned_cols=223  Identities=9%  Similarity=-0.011  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---CCHH
Q 010459          156 EEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG--KFNEALLFLNEMKEMNLSPQSDTYDGLIQAY----GKY---KMYD  226 (510)
Q Consensus       156 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g~~~  226 (510)
                      ++|+.+++.+...... +...||.--..+...|  ++++++++++.+.....+ +..+|+.--..+    .+.   ++++
T Consensus        50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence            4566666665554321 3445555555555555  566666666665554332 334444333333    333   4555


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459          227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK--RMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR  304 (510)
Q Consensus       227 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  304 (510)
                      +++.+++.+.+.. +.|..+|+----...+.|.++  ++++.++++.+.... |...|+.--......+..         
T Consensus       128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~---------  196 (306)
T 3dra_A          128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL---------  196 (306)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG---------
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc---------
Confidence            5555555555443 345555555444445555554  555555555544333 444443332222222220         


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccccc-HHHHHHHHHHCC--CCc
Q 010459          305 LLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRG-IDSVVREMESAK--VRW  381 (510)
Q Consensus       305 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~g--~~p  381 (510)
                             .+             ...++++.+.........+.+...|+..-..+...|+... +.++.++..+.+  -..
T Consensus       197 -------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
T 3dra_A          197 -------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT  256 (306)
T ss_dssp             -------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred             -------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence                   00             0014555555555556666667777666666666655433 444555544432  123


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          382 NVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      +...+..+...|.+.|+.++|.++++.+.+
T Consensus       257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          257 SSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            667777888888888888888888888774

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.67  E-value=8.9e-07  Score=92.47  Aligned_cols=184  Identities=9%  Similarity=-0.090  Sum_probs=152.9

Q ss_pred             HHcCCHHHHHHHHHHHH--------HCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010459          255 ACAGLLKRMEGTYKSML--------TKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIK  326 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  326 (510)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...|.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            78899999999999988        332 2256778888999999999999999999998764 4467888899999999


Q ss_pred             hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHH
Q 010459          327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLL  406 (510)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  406 (510)
                      .|++++|...++......+.+...|..+...+...|+.++ .+.|++..+.... +...|..+..+|.+.|++++|.+.|
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999 9999999987655 7788999999999999999999999


Q ss_pred             HhhhhCCCCCCH-HHHHHHHHhhhhcC--------ccchHHHHHHHc
Q 010459          407 SELPTRHVKPDI-VTIGILYDARRIGF--------DGTGALEMWKRI  444 (510)
Q Consensus       407 ~~m~~~g~~p~~-~t~~~li~~~~~~~--------~~~~a~~~~~~~  444 (510)
                      ++..+.  .|+. ..+..+..++...+        ++++|.+.+..+
T Consensus       558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             Hhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            999864  5764 45555555655433        366666666655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.67  E-value=2.4e-06  Score=77.70  Aligned_cols=173  Identities=11%  Similarity=0.054  Sum_probs=117.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CC-CHH
Q 010459          171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ---SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC-SP-DHI  245 (510)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~-~~~  245 (510)
                      +.+...+-.+...+.+.|++++|.+.|+++.+.... +   ...+..+...|.+.|++++|...|++..+... .| ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            345677888888899999999999999999875422 2   56788888999999999999999999887521 11 245


Q ss_pred             HHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCccCHHHH-----------------HHHHHHHHhcCChhHHHH
Q 010459          246 TYNLLIQEFAC--------AGLLKRMEGTYKSMLTKRMHLRSSTM-----------------VAILDAYMNFGMLDKMEK  300 (510)
Q Consensus       246 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~-----------------~~ll~~~~~~g~~~~a~~  300 (510)
                      .+..+..++..        .|++++|...|++..+.... +....                 ..+...|...|++++|..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            66677778888        99999999999998875322 11222                 344566677777777777


Q ss_pred             HHHHHHhcCCCC--CHHHHHHHHHHHHhh----------cchhHHHHHHHHHHhhcC
Q 010459          301 FYKRLLNSRTPL--KEDLVRKLAEVYIKN----------YMFSRLDDLGDDLASRIG  345 (510)
Q Consensus       301 ~~~~m~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~  345 (510)
                      .++.+++..-..  ....+..+..+|.+.          |++++|...+..+....+
T Consensus       170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            777776543111  233455555555544          444455544444443333

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.67  E-value=3.2e-07  Score=78.05  Aligned_cols=158  Identities=10%  Similarity=0.035  Sum_probs=82.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccC
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYK  223 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g  223 (510)
                      +...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++..+..  |+...+..+... +.+.+
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence            4445555666666666665544332 2245556666666666666666666666554432  233222221111 11112


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 010459          224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFY  302 (510)
Q Consensus       224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~  302 (510)
                      ...+|...|++..+.. +.+...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|...|
T Consensus        89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            2223455565555442 2245666666666666666666666666666553322 2345556666666666666666666


Q ss_pred             HHHH
Q 010459          303 KRLL  306 (510)
Q Consensus       303 ~~m~  306 (510)
                      ++..
T Consensus       168 ~~al  171 (176)
T 2r5s_A          168 RRQL  171 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.66  E-value=1.6e-05  Score=79.31  Aligned_cols=342  Identities=11%  Similarity=-0.057  Sum_probs=187.0

Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCC
Q 010459          117 SRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL-MEEAVRAFQEMEGF-AL-KPSLEIYNSIIHGYS----KIGK  189 (510)
Q Consensus       117 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~  189 (510)
                      |+.+.+.++|++...   ..|++..|...+....+.++ .+....+|+..... |. ..+...|...+.-+.    ..++
T Consensus        28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~  104 (493)
T 2uy1_A           28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR  104 (493)
T ss_dssp             TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred             CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence            556666666665542   23566666666666655552 34455555554432 32 224555665555433    2345


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010459          190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYG-------------KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC  256 (510)
Q Consensus       190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  256 (510)
                      .+.+.++|++.+.....--...|......-.             ..+.+..|..+++.+...--..+...|...+.--..
T Consensus       105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~  184 (493)
T 2uy1_A          105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME  184 (493)
T ss_dssp             HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            5666666666655211111111211111000             012233344444444321001244566665554322


Q ss_pred             cC--C-----HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 010459          257 AG--L-----LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM  329 (510)
Q Consensus       257 ~g--~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  329 (510)
                      ++  -     .+.+..+|++..... +.+...|...+.-+.+.|+.+.|.+++++..+.  +.+...+.    .|.....
T Consensus       185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e  257 (493)
T 2uy1_A          185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD  257 (493)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred             CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence            21  1     345667888877643 335677777778888889999999999988877  33333332    2222211


Q ss_pred             hhHHHHHHHHHHh-------------hcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHH--HHHHHH
Q 010459          330 FSRLDDLGDDLAS-------------RIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI--ILLAYL  394 (510)
Q Consensus       330 ~~~a~~~~~~~~~-------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~  394 (510)
                      .++.   +..+..             ........|...+....+.+..+.|..+|++. +. ..++...|..  .+....
T Consensus       258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~  332 (493)
T 2uy1_A          258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA  332 (493)
T ss_dssp             CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH
T ss_pred             hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH
Confidence            1111   111111             01112456777777777788899999999998 32 2234445543  222222


Q ss_pred             cCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHH
Q 010459          395 KMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCE  473 (510)
Q Consensus       395 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  473 (510)
                       .++.+.|..+|+...+.-  |+ ...+...++-....|+.+.|..+|++...     ....|...++.=...|+.+.+.
T Consensus       333 -~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r  404 (493)
T 2uy1_A          333 -TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFR  404 (493)
T ss_dssp             -HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHH
T ss_pred             -CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHH
Confidence             336999999999988642  33 33455566666778899999999999832     2344555555555679999999


Q ss_pred             HHHhhcCC
Q 010459          474 EVYSSLEP  481 (510)
Q Consensus       474 ~~~~~m~~  481 (510)
                      +++++..+
T Consensus       405 ~v~~~~~~  412 (493)
T 2uy1_A          405 ELVDQKMD  412 (493)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877663

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.66  E-value=1.7e-06  Score=76.84  Aligned_cols=187  Identities=11%  Similarity=-0.001  Sum_probs=111.4

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 010459          103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL--EIYNS  179 (510)
Q Consensus       103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~  179 (510)
                      +..+......+.+.|++++|.+.|+.+.+.....|. ...+..+..+|.+.|++++|+..|++..+.......  ..|..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344555666777888888888888887753222222 356667778888888888888888888765322111  13433


Q ss_pred             HHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 010459          180 IIHGYSK------------------IGKFNEALLFLNEMKEMNLSPQS-DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGC  240 (510)
Q Consensus       180 li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~  240 (510)
                      +..++.+                  .|+.++|...|++..+..  |+. .++.+....          ..+...+.    
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH----
Confidence            4444433                  345555555555555432  221 111111000          00000000    


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHL--RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       241 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                          ...-.+...|.+.|++++|...|+++.+.....  ....+..+..++.+.|+.++|.+.++.+...+
T Consensus       148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                011245567888999999999999888753221  12467778888999999999999998887764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.65  E-value=3e-05  Score=71.75  Aligned_cols=226  Identities=9%  Similarity=-0.007  Sum_probs=162.3

Q ss_pred             HHHHHhcCCC-CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 010459          110 IRFLKNSSRS-RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG--LMEEAVRAFQEMEGFALKPSLEIYNSIIHGY--  184 (510)
Q Consensus       110 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~--  184 (510)
                      +.+..+.|.. ++|+++++.+..  -.+-+..+|+.--..+...|  +++++++.++.+.... +.+..+|+.--..+  
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~  115 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ  115 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence            3344455554 589999998875  22345566888888888888  9999999999999875 34778888766555  


Q ss_pred             --Hhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          185 --SKI---GKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD--EIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       185 --~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                        ...   +++++++++++.+.+...+ +..+|+.-.-.+.+.|.++  +++..++++.+.. +.|...|+---....+.
T Consensus       116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSS
T ss_pred             HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence              555   7899999999999987654 8889998888888889888  9999999999876 46888998776666666


Q ss_pred             CC------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhhc
Q 010459          258 GL------LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDK-MEKFYKRLLNSR--TPLKEDLVRKLAEVYIKNY  328 (510)
Q Consensus       258 g~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~  328 (510)
                      +.      ++++++.++++....+. |...|+-.-..+.+.|+... ..++...+.+.+  -..+...+..+.+.|.+.|
T Consensus       194 ~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          194 KHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             cccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            66      88888988888877544 77778777777777776433 444555444322  1234455555666665555


Q ss_pred             chhHHHHHHHHHH
Q 010459          329 MFSRLDDLGDDLA  341 (510)
Q Consensus       329 ~~~~a~~~~~~~~  341 (510)
                      +.++|.+++..+.
T Consensus       273 ~~~~A~~~~~~l~  285 (306)
T 3dra_A          273 KYNESRTVYDLLK  285 (306)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555544443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.64  E-value=9.4e-07  Score=90.44  Aligned_cols=154  Identities=7%  Similarity=-0.098  Sum_probs=112.7

Q ss_pred             cCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010459          116 SSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALL  195 (510)
Q Consensus       116 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  195 (510)
                      .|++++|.+.++...+  ..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4778889998887763  233457788888899999999999999999988764 3367888889999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 010459          196 FLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA---GLLKRMEGTYKSMLT  272 (510)
Q Consensus       196 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~  272 (510)
                      .|++..+.... +...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+...   |+.++|.+.+++..+
T Consensus        79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            99998775432 57788889999999999999999999887764 34677888888889998   999999999998887


Q ss_pred             CC
Q 010459          273 KR  274 (510)
Q Consensus       273 ~g  274 (510)
                      .+
T Consensus       157 ~~  158 (568)
T 2vsy_A          157 QG  158 (568)
T ss_dssp             HT
T ss_pred             cC
Confidence            64

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.64  E-value=4.2e-06  Score=74.26  Aligned_cols=189  Identities=11%  Similarity=0.039  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-P-SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQS-DTYDG  214 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~t~~~  214 (510)
                      ...+-.+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|++.|++..+.... |.. .++-.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344555667788889999999999998865321 1 1357888888999999999999999998775432 111 23333


Q ss_pred             HHHHHHc------------------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010459          215 LIQAYGK------------------YKMYDEIDMCLKMMKLDGCSPD-HITYNLLIQEFACAGLLKRMEGTYKSMLTKRM  275 (510)
Q Consensus       215 li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  275 (510)
                      +...+.+                  .|+.++|...|+++.+.-  |+ ...+.+.....          .+...+.    
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~~----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRLA----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHHH----
Confidence            3334433                  456677777777766542  22 22222111100          0000000    


Q ss_pred             ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCc
Q 010459          276 HLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL--KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRT  347 (510)
Q Consensus       276 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  347 (510)
                          .....+...+.+.|++++|...++.+++..-..  ....+..+..+|.+.|++++|.+.++.+....+.+
T Consensus       148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                111345677889999999999999998764111  12567889999999999999999998887666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.64  E-value=1.1e-06  Score=81.43  Aligned_cols=167  Identities=11%  Similarity=0.018  Sum_probs=129.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010459          136 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGL  215 (510)
Q Consensus       136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  215 (510)
                      +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++....  .|+.......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            4455667778888889999999999999988764 236778889999999999999999999988664  3554433332


Q ss_pred             H-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHhcC
Q 010459          216 I-QAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMNFG  293 (510)
Q Consensus       216 i-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g  293 (510)
                      . ..+.+.++.++|...|++..+.. +.+...+..+...+...|++++|.+.|.+..+.... .+...+..+...+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2 23566777888888888887764 457888889999999999999999999998876432 13567888899999999


Q ss_pred             ChhHHHHHHHHHH
Q 010459          294 MLDKMEKFYKRLL  306 (510)
Q Consensus       294 ~~~~a~~~~~~m~  306 (510)
                      +.++|...+++..
T Consensus       270 ~~~~a~~~~r~al  282 (287)
T 3qou_A          270 TGDALASXYRRQL  282 (287)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            9999888887654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.62  E-value=1.1e-06  Score=89.77  Aligned_cols=131  Identities=8%  Similarity=-0.056  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          104 DHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG  183 (510)
Q Consensus       104 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  183 (510)
                      ..|..+...+.+.|++++|.+.++...+  -.+.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+...
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  100 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA  100 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3444455555555555555555555442  122234455555555555555555555555554432 1234455555555


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHhC
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY---KMYDEIDMCLKMMKLD  238 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~  238 (510)
                      |.+.|++++|.+.|++..+.... +..++..+...+.+.   |+.++|...+++..+.
T Consensus       101 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          101 LEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            55555555555555555443211 344455555555555   5555555555555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.61  E-value=1.7e-06  Score=80.20  Aligned_cols=198  Identities=8%  Similarity=-0.046  Sum_probs=135.5

Q ss_pred             CCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-
Q 010459          100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFN---SQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPSL-  174 (510)
Q Consensus       100 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-  174 (510)
                      .|+..+...+...+.-.     ...++.     .....+...   +...+..+...|++++|...+++..+... .|+. 
T Consensus        43 ~~~~~~l~~i~~~l~~~-----~~~~~~-----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~  112 (293)
T 3u3w_A           43 YPSMDILQGIAAKLQIP-----IIHFYE-----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ  112 (293)
T ss_dssp             CCCHHHHHHHHHHHTCC-----THHHHH-----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CCCHHHHHHHHHHhCcC-----HHHHhC-----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence            56666766666655321     112222     222233333   33346778889999999999999886421 2221 


Q ss_pred             ---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh----C-CCC
Q 010459          175 ---EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKL----D-GCS  241 (510)
Q Consensus       175 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~  241 (510)
                         ..+..+...+...+++++|++.|++..+.... ++    ..+++.+...|...|++++|...|++..+    . +..
T Consensus       113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (293)
T 3u3w_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence               23445777777788999999999998874322 23    33688999999999999999999988773    1 212


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCccC-HHHHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 010459          242 PD-HITYNLLIQEFACAGLLKRMEGTYKSMLT----KRMHLR-SSTMVAILDAYMNFGM-LDKMEKFYKRLLN  307 (510)
Q Consensus       242 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~  307 (510)
                      +. ..+|..+...|.+.|++++|.+.+++..+    .+..+. ..+|..+-.++.+.|+ .++|.+.+++...
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            22 34778888999999999999999987764    222222 5688888889999994 6999998888764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.58  E-value=6.7e-07  Score=76.02  Aligned_cols=58  Identities=9%  Similarity=0.080  Sum_probs=29.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          249 LLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      .....+.+.|++++|...|++..+... -+...+..+...+...|++++|...++...+
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~   68 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPL   68 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence            334445555556666555555443211 1344555555555555666665555555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.57  E-value=3.9e-06  Score=73.43  Aligned_cols=128  Identities=14%  Similarity=0.008  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      +..+...+.+.|++++|...|++..    .|+...|..+...|.+.|++++|++.|++..+.. ..+..+|..+...|.+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            3445566677788888888877664    5677778888888888888888888888776654 2256677777788888


Q ss_pred             cCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          222 YKMYDEIDMCLKMMKLDGCS--------------P-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      .|++++|...|++..+....              | +...|..+...|.+.|++++|.+.|+...+..
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            88888888888877764311              1 12567777778888888888888888877653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.57  E-value=2.4e-06  Score=78.95  Aligned_cols=174  Identities=9%  Similarity=0.013  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010459          155 MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKM  234 (510)
Q Consensus       155 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~  234 (510)
                      .+...+.+....    +.+...+..+...+.+.|++++|.+.|++..+.... +...+..+...|.+.|++++|...+++
T Consensus       102 ~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~  176 (287)
T 3qou_A          102 EEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXT  176 (287)
T ss_dssp             HHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            344445555443    445566667777777788888888888877765422 566777777778888888888888877


Q ss_pred             HHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-C
Q 010459          235 MKLDGCSPDHITYNLL-IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP-L  312 (510)
Q Consensus       235 m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~  312 (510)
                      ....  .|+....... ...+.+.++.++|.+.+++...... .+...+..+...+...|++++|.+.+.++.+..-. .
T Consensus       177 ~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~  253 (287)
T 3qou_A          177 IPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA  253 (287)
T ss_dssp             SCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred             Cchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            7654  3444333222 2235566677777777777766532 25667777777777778888888877777765311 1


Q ss_pred             CHHHHHHHHHHHHhhcchhHHHHH
Q 010459          313 KEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       313 ~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      +...+..+...|...|+.+++...
T Consensus       254 ~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          254 DGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             GGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHHHcCCCCcHHHH
Confidence            144555555555555555554444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.56  E-value=0.00014  Score=72.40  Aligned_cols=328  Identities=9%  Similarity=-0.004  Sum_probs=205.4

Q ss_pred             CCChhhHHHHHHHHHhcCC-CCcHHHHHHHHHhhcCCC-CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCC
Q 010459          100 DWTKDHFWAVIRFLKNSSR-SRQIPQVFDMWKNIEKSR-INEFNSQKIIGMLC----EEGLMEEAVRAFQEMEGFALKPS  173 (510)
Q Consensus       100 ~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~  173 (510)
                      .|+...|...++...+.+. .+....+|+.....-|.. .+...|...+..+.    ..++++.+..+|++........-
T Consensus        44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~  123 (493)
T 2uy1_A           44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL  123 (493)
T ss_dssp             CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH
T ss_pred             CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH
Confidence            4688899988888877763 567888999888655643 47788988888765    35788999999999987321111


Q ss_pred             HHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C-----HHHHHHHHH
Q 010459          174 LEIYNSIIHGYSK-------------IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK--M-----YDEIDMCLK  233 (510)
Q Consensus       174 ~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~-----~~~a~~~~~  233 (510)
                      ...|......-..             .+.+..|..+++++...--..+...|...+..-...+  -     .+.+..+|+
T Consensus       124 ~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye  203 (493)
T 2uy1_A          124 SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN  203 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence            1233322221100             1122334444444432100013446666665533221  1     345678899


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---
Q 010459          234 MMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT---  310 (510)
Q Consensus       234 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---  310 (510)
                      +..... +.+...|-..+.-+.+.|+.+.|..+|++....   |+......   .|+...+.++.   ++.+.+.-.   
T Consensus       204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~  273 (493)
T 2uy1_A          204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC---
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhc
Confidence            887653 456888999999899999999999999999877   44322211   23332222222   333332110   


Q ss_pred             ------CC---CHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhc-ccccHHHHHHHHHHCCCC
Q 010459          311 ------PL---KEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLL-SHRGIDSVVREMESAKVR  380 (510)
Q Consensus       311 ------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~  380 (510)
                            .+   ...+|...+..+.+.+.++.|..++... ..+......|..........+ +.+.|..+|+...+.-..
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                  01   1245666677776778899999998888 333344455554333333344 689999999998875422


Q ss_pred             cCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhhhhcCccchHHHHHHHc
Q 010459          381 WNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDARRIGFDGTGALEMWKRI  444 (510)
Q Consensus       381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~~  444 (510)
                       +...|...++-..+.|+.+.|..+|+...+     ....|...+.--...|+.+.+.+++++.
T Consensus       353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~  410 (493)
T 2uy1_A          353 -STLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQK  410 (493)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             345566677777888999999999999842     4667777777666778888888877766

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.53  E-value=9.3e-06  Score=71.24  Aligned_cols=142  Identities=10%  Similarity=0.017  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHH
Q 010459          157 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK----MYDEIDMCL  232 (510)
Q Consensus       157 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~a~~~~  232 (510)
                      +|++.|++..+.   -+...+..|-..|...+++++|++.|++..+.|   +...+..|-..|.. +    +.++|...|
T Consensus         4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            466677776664   366777777777777788888888888777765   56667777777776 5    777788777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 010459          233 KMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRMH-LRSSTMVAILDAYMN----FGMLDKMEKFYK  303 (510)
Q Consensus       233 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~  303 (510)
                      ++..+.|   +...+..|-..|..    .+++++|++.|++..+.|.. .+...+..|-..|..    .++.++|.+.|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            7776643   45566666666665    66777777777777766531 014556666666666    566777777777


Q ss_pred             HHHhc
Q 010459          304 RLLNS  308 (510)
Q Consensus       304 ~m~~~  308 (510)
                      +..+.
T Consensus       154 ~A~~~  158 (212)
T 3rjv_A          154 GSSSL  158 (212)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            76655

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.53  E-value=3.2e-06  Score=79.01  Aligned_cols=190  Identities=6%  Similarity=-0.057  Sum_probs=128.6

Q ss_pred             cCCCCcHHHHHHHHHhhcC-----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHH
Q 010459          116 SSRSRQIPQVFDMWKNIEK-----SRINE----FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS----LEIYNSII  181 (510)
Q Consensus       116 ~g~~~~a~~~~~~~~~~~~-----~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li  181 (510)
                      .|++++|.++++...+...     ..++.    ..|+.....|...|++++|...|.+..+.... .+    ..+|+.+.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455566666665543211     12332    24666677788889999999888877643110 01    35788888


Q ss_pred             HHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 010459          182 HGYSKIGKFNEALLFLNEMKEM----NLS-PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSP-DHITYNLLI  251 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li  251 (510)
                      ..|.+.|++++|++.|++..+.    |-. .-..+++.+-..|.+ |++++|...|++..+.    +-.+ ...+++.+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            8899999999999988876542    211 113577788888888 9999999988886542    1110 145777888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHC----CCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          252 QEFACAGLLKRMEGTYKSMLTK----RMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       252 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      ..|.+.|++++|+..|++....    +..+. ..++..+...+...|++++|...|++..
T Consensus       163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            8899999999999999887652    22222 2356666777777899999999998887

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.53  E-value=7.1e-07  Score=73.66  Aligned_cols=57  Identities=11%  Similarity=-0.009  Sum_probs=23.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          250 LIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       250 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      +-..|.+.|++++|++.|++..+.... +..+|..+...|...|++++|...|+...+
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            333444444444444444444333211 333444444444444444444444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.51  E-value=3.7e-05  Score=71.13  Aligned_cols=208  Identities=11%  Similarity=-0.063  Sum_probs=144.5

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHH
Q 010459          125 VFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIY---NSIIHGYSKIGKFNEALLFLNEMK  201 (510)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~  201 (510)
                      .+..+.. ....|+..+...+...+.-.-         +.+.......+...+   ...+..+...|++++|.+++++..
T Consensus        33 ~~s~~e~-g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l  102 (293)
T 3u3w_A           33 EVSRIES-GAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL  102 (293)
T ss_dssp             HHHHHHT-TSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            3444443 334677777666666554321         111111112333333   344678899999999999999987


Q ss_pred             HCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          202 EMNL-SPQS----DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-PD----HITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       202 ~~g~-~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      +... .|+.    ..+..+...+...|++++|...|++..+.... ++    ..+++.+-..|...|++++|+..|++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  182 (293)
T 3u3w_A          103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7432 2332    23445777888889999999999999874222 23    3368999999999999999999999987


Q ss_pred             H----C-CCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHHhhcc-hhHHHHHHHH
Q 010459          272 T----K-RMHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLK-EDLVRKLAEVYIKNYM-FSRLDDLGDD  339 (510)
Q Consensus       272 ~----~-g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~~~-~~~a~~~~~~  339 (510)
                      +    . +..+. ..+|..+...|.+.|++++|.+.+++..+    .+..+. ..++..+...|.+.|+ +++|...++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            3    2 22333 34788899999999999999999998774    233333 5788889999999994 6899888776


Q ss_pred             HHh
Q 010459          340 LAS  342 (510)
Q Consensus       340 ~~~  342 (510)
                      ...
T Consensus       263 Al~  265 (293)
T 3u3w_A          263 ASF  265 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.49  E-value=1e-06  Score=72.72  Aligned_cols=140  Identities=8%  Similarity=-0.125  Sum_probs=93.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhH
Q 010459          254 FACAGLLKRMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSR  332 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  332 (510)
                      +...|++++|++.++.....  .| +...+..+-..|.+.|++++|.+.|++.++.. +-+...+..+..+|.+.|++++
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            44557788888888776543  23 23455667788888888888888888887764 3456777777777888888877


Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHH-HHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010459          333 LDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSV-VREMESAKVRWNVTTANIILLAYLKMK  397 (510)
Q Consensus       333 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g  397 (510)
                      |...++......+.+..+|..+...+...|+.++|.+. +++..+..+. +..+|...-..+.+.|
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            77777777777777777777777777777776665544 3555554333 4555555544444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.48  E-value=1.1e-05  Score=70.47  Aligned_cols=130  Identities=12%  Similarity=-0.048  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF  254 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  254 (510)
                      ..+..+...+...|++++|++.|++.    +.|+..+|..+...|.+.|++++|...|++..+.. +.+...|..+...|
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence            44566777888999999999999877    46788999999999999999999999999988765 45788899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHCCC--------------cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 010459          255 ACAGLLKRMEGTYKSMLTKRM--------------HL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~~~g~--------------~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~  309 (510)
                      ...|++++|.+.|++..+...              .| ....+..+..++...|++++|.+.++...+..
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999999999999987532              12 23678888899999999999999999998765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.46  E-value=7.2e-06  Score=64.34  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG  220 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  220 (510)
                      .+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+... .+..++..+...|.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence            34444444444444444444444444332 12334444444444444444444444444433221 13334444444444


Q ss_pred             ccCCHHHHHHHHHHHH
Q 010459          221 KYKMYDEIDMCLKMMK  236 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~  236 (510)
                      +.|++++|...|+++.
T Consensus        89 ~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           89 KQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHH
Confidence            4444444444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.45  E-value=9.4e-06  Score=63.65  Aligned_cols=98  Identities=18%  Similarity=0.203  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+.+.|++++|.+.|+++.+... .+..++..+...+.+.|++++|...|+++.+.. +.+..+|..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            45677777777777777777777777765432 255667777777777777777777777766543 3456666777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHC
Q 010459          254 FACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~  273 (510)
                      |...|++++|...|+++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            77777777777777776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.45  E-value=9.7e-06  Score=67.48  Aligned_cols=127  Identities=8%  Similarity=-0.047  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG  220 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  220 (510)
                      .+..+...+...|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.|++..+... .+..+|..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            34455555666666666666666665542 22455666666666666666666666666655431 24555666666666


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDHITYNL--LIQEFACAGLLKRMEGTYKSM  270 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m  270 (510)
                      +.|++++|...|++..+.. +.+...+..  ....+.+.|++++|++.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            6666666666666655442 223333322  222255556666666655543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.44  E-value=0.0001  Score=68.10  Aligned_cols=167  Identities=8%  Similarity=-0.063  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSL-----EIYNSIIHGYSKIGKFNEALLFLNEMKEMNL---SPQ--S  209 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~  209 (510)
                      ..+...+..+...|++++|.+.+++..+.....+.     ..+..+...+...|++++|++.|++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34455677778888888888888777664322111     2234455566777788888888888765321   112  4


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccC-
Q 010459          210 DTYDGLIQAYGKYKMYDEIDMCLKMMKL---D-GCSP--DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHLR-  278 (510)
Q Consensus       210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-  278 (510)
                      .+|+.+...|...|++++|...|++..+   . +-.+  ...+|..+...|.+.|++++|++.+++..+.    +.... 
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4777888888888888888888887652   1 1111  1257777778888888888888888776532    11111 


Q ss_pred             HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 010459          279 SSTMVAILDAYMNFGMLDKM-EKFYKRLL  306 (510)
Q Consensus       279 ~~t~~~ll~~~~~~g~~~~a-~~~~~~m~  306 (510)
                      ..+|..+...|...|+.++| ...++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            45677777788888888888 66666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.41  E-value=5.1e-06  Score=77.59  Aligned_cols=194  Identities=9%  Similarity=-0.005  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRIN----EFNSQKIIGMLCEEGLMEEAVRAFQEMEGF----ALKP-SLE  175 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~  175 (510)
                      .|......|...|++++|.+.|........-..+    ..+|+.+...|.+.|++++|+..|++..+.    |-.. -..
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5677778889999999999999877653211112    357888899999999999999999886543    2111 145


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP-----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSPD-HI  245 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~  245 (510)
                      +|+.+...|.+ |++++|++.|++..+.....     ...+++.+...|.+.|++++|...|++..+.    +..++ ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            78888889988 99999999999886531111     1467888999999999999999999988752    21111 23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-cC---HHHHHHHHHHHHhcCChhHHHHH
Q 010459          246 TYNLLIQEFACAGLLKRMEGTYKSMLTKRMH-LR---SSTMVAILDAYMNFGMLDKMEKF  301 (510)
Q Consensus       246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---~~t~~~ll~~~~~~g~~~~a~~~  301 (510)
                      .+..+...+...|++++|...|++.. .... ++   ......++.++ ..|+.+...++
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            66677778888899999999999988 4211 11   12344555555 56776666553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.39  E-value=1.5e-05  Score=66.22  Aligned_cols=130  Identities=12%  Similarity=0.045  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+...|++++|...|++..+... .+..++..+...+.+.|++++|...|++..+.. +.+...|..+...
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            45577777788888888888888888776532 257777888888888888888888888877654 3467777788888


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCccCHHHH--HHHHHHHHhcCChhHHHHHHHHHH
Q 010459          254 FACAGLLKRMEGTYKSMLTKRMHLRSSTM--VAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      +...|++++|.+.|++..+.... +...+  ......+...|++++|.+.+....
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            88888888888888887765322 33333  333444666777777777776553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.38  E-value=0.00016  Score=67.62  Aligned_cols=177  Identities=10%  Similarity=0.006  Sum_probs=110.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          143 QKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       143 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      +.+-....+.+..++|+++++.+..... -+..+|+.--..+...| ++++++++++.+.....+ +..+|+.--..+.+
T Consensus        58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~  135 (349)
T 3q7a_A           58 DYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence            3333344444555778888888887643 25667887777777777 488888888888876654 66777776666666


Q ss_pred             c-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCccCHHHHHHHHHHHHh
Q 010459          222 Y-K-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLK--------RMEGTYKSMLTKRMHLRSSTMVAILDAYMN  291 (510)
Q Consensus       222 ~-g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  291 (510)
                      . + +.++++..++.+.+.. +.|...|+--.-...+.|.++        ++++.++++.+..+. |...|+---..+.+
T Consensus       136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS  213 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred             hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            5 5 7778888888887665 457777776555555555554        777777777776544 66666666555555


Q ss_pred             cCC-------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010459          292 FGM-------LDKMEKFYKRLLNSRTPLKEDLVRKLAEVY  324 (510)
Q Consensus       292 ~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  324 (510)
                      .+.       ++++.+..+..++.. +-|...++-+-..+
T Consensus       214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll  252 (349)
T 3q7a_A          214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFL  252 (349)
T ss_dssp             STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            554       344555554444432 23334444333333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.37  E-value=5.3e-06  Score=76.42  Aligned_cols=98  Identities=10%  Similarity=-0.125  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      +...+..+...+.+.|++++|.+.|++..+.... +...|..+...|.+.|++++|...+++..+.. +.+...|..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3445555666666666666666666666553211 55566666666666666666666666665543 234556666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 010459          253 EFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~  272 (510)
                      +|...|++++|...|++..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.36  E-value=0.00028  Score=66.06  Aligned_cols=177  Identities=9%  Similarity=-0.002  Sum_probs=135.5

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEG-LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI-G-  188 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-  188 (510)
                      ...+....++|+++++.+..  -.+-+..+|+.--..+...| ++++++..++.+.... +.+..+|+.--..+.+. + 
T Consensus        63 ~~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence            33445556689999999875  33445667887777777888 5999999999999876 44888999888877776 7 


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-
Q 010459          189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD--------EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL-  259 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-  259 (510)
                      ++++++++++.+.+...+ |..+|+.-.-.+.+.|.++        +++..++++.+.. +.|...|+---..+.+.++ 
T Consensus       140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~  217 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA  217 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred             ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence            899999999999887654 8888887666666666666        8999999998776 4588999988877777776 


Q ss_pred             ------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          260 ------LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       260 ------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                            ++++++.+++....... |...|+-+-..+.+.|.
T Consensus       218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence                  68899999888876443 66677665555555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.33  E-value=6.1e-06  Score=71.43  Aligned_cols=157  Identities=11%  Similarity=0.011  Sum_probs=99.7

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCC
Q 010459          150 CEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM----NLS-PQSDTYDGLIQAYGKYKM  224 (510)
Q Consensus       150 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~  224 (510)
                      ...|++++|.+.++.+... ......+++.+...+...|++++|.+.+++..+.    +.. ....++..+...|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            3467777777755444331 1234567777777777888888888877776541    111 134566777777888888


Q ss_pred             HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcC
Q 010459          225 YDEIDMCLKMMKLD----GCSP--DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFG  293 (510)
Q Consensus       225 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g  293 (510)
                      +++|...+++..+.    +-.+  ....+..+-..+...|++++|...+++....    +..+ -..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            88888888776542    2111  2345667777888888888888888776532    2111 1234567777888888


Q ss_pred             ChhHHHHHHHHHHh
Q 010459          294 MLDKMEKFYKRLLN  307 (510)
Q Consensus       294 ~~~~a~~~~~~m~~  307 (510)
                      ++++|.+.+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888877654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.33  E-value=1.6e-05  Score=62.95  Aligned_cols=116  Identities=12%  Similarity=-0.024  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      ..+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+... .+...+..+...|
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence            344445555555555555555555554432 22444555555555555555555555555544321 1344455555555


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG  258 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  258 (510)
                      .+.|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence            55555555555555544432 223444444444444444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.33  E-value=1.7e-05  Score=63.16  Aligned_cols=97  Identities=10%  Similarity=0.020  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+.+.|++++|.+.|++..+... .+..++..+...|...|++++|...|++..+.. +.+...|..+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            34444444455555555555555554444321 134444445555555555555555555544432 2234444445555


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 010459          254 FACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~  272 (510)
                      |.+.|++++|.+.|++..+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.32  E-value=1.5e-05  Score=63.34  Aligned_cols=118  Identities=13%  Similarity=0.017  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQ  217 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  217 (510)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+...|...|++++|++.|++..+... .+..++..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence            44555666666666666666666666666543 22556666666666666777777776666655432 24566666666


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010459          218 AYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG  258 (510)
Q Consensus       218 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  258 (510)
                      .|.+.|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            6777777777777776665442 123344444444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.31  E-value=2.2e-05  Score=62.08  Aligned_cols=119  Identities=13%  Similarity=0.038  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQ  252 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  252 (510)
                      +...|..+...+...|++++|.+.|++..+... .+...+..+...+...|++++|...+++..+.. +.+...|..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            345666667777777777777777777665432 255666677777777777777777777766543 334566666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          253 EFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                      .|...|++++|...|++..+... .+...+..+..++...|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence            77777777777777776665432 144555555555555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.30  E-value=8.1e-06  Score=69.15  Aligned_cols=123  Identities=7%  Similarity=-0.019  Sum_probs=89.7

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh-
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHG-YSKIGKF-  190 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~-  190 (510)
                      +...|++++|.+.++...+  ..+.+...|..+...|...|++++|...|++..+.. +.+...|..+... +.+.|++ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence            3457788888888887764  234566788888888888899999998888887654 2366777777777 7788887 


Q ss_pred             -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 010459          191 -NEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDG  239 (510)
Q Consensus       191 -~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g  239 (510)
                       ++|.+.|++..+.... +...+..+...|.+.|++++|...|++..+..
T Consensus        97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence             8888888888775422 56677778888888888888888888877653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.29  E-value=2.2e-05  Score=64.57  Aligned_cols=97  Identities=11%  Similarity=0.009  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      ..+..+-..+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +...|..+-.+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence            345555566666666666666666666553 225566666666666666666666666666554322 455666666666


Q ss_pred             HccCCHHHHHHHHHHHHhC
Q 010459          220 GKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~  238 (510)
                      .+.|++++|...|++..+.
T Consensus       115 ~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.29  E-value=4.8e-06  Score=72.08  Aligned_cols=156  Identities=8%  Similarity=-0.074  Sum_probs=115.3

Q ss_pred             HhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcC
Q 010459          114 KNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF----ALK-PSLEIYNSIIHGYSKIG  188 (510)
Q Consensus       114 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g  188 (510)
                      ...|++++|.+.++.+.  ........++..+...|...|++++|...|++..+.    +.. ....+++.+...|...|
T Consensus         3 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHH--TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            45788999999666554  222345678899999999999999999999988752    112 23467888889999999


Q ss_pred             ChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHH
Q 010459          189 KFNEALLFLNEMKEM----NLSP--QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSPD--HITYNLLIQEFAC  256 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~li~~~~~  256 (510)
                      ++++|.+.+++..+.    +-.|  ...++..+...+...|++++|...+++..+.    + .+.  ..++..+...+..
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~  159 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQ  159 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence            999999999887653    2121  2456788889999999999999999887632    2 111  2345777888999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010459          257 AGLLKRMEGTYKSMLT  272 (510)
Q Consensus       257 ~g~~~~A~~~~~~m~~  272 (510)
                      .|++++|.+.+++..+
T Consensus       160 ~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          160 EKNLLEAQQHWLRARD  175 (203)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999987653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.29  E-value=7e-06  Score=75.57  Aligned_cols=99  Identities=7%  Similarity=-0.044  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459          208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD  287 (510)
Q Consensus       208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  287 (510)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++..+... -+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            55677888888999999999999999988764 34788888899999999999999999999887642 25778888889


Q ss_pred             HHHhcCChhHHHHHHHHHHhc
Q 010459          288 AYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       288 ~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ++...|++++|...+....+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999887753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.27  E-value=3.3e-05  Score=61.32  Aligned_cols=92  Identities=13%  Similarity=0.030  Sum_probs=37.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      ......|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|...|++..+.. +.+...|..+-.+|...
T Consensus        17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           17 KNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence            3333444444444444444444433221 133344444444444444444444444443332 22333444444444444


Q ss_pred             CCHHHHHHHHHHHH
Q 010459          258 GLLKRMEGTYKSML  271 (510)
Q Consensus       258 g~~~~A~~~~~~m~  271 (510)
                      |++++|.+.|++..
T Consensus        95 ~~~~~A~~~~~~al  108 (126)
T 4gco_A           95 REWSKAQRAYEDAL  108 (126)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            44444444444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.26  E-value=0.00013  Score=67.50  Aligned_cols=27  Identities=4%  Similarity=-0.328  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHcCCChhHH-HHHHHhh
Q 010459          383 VTTANIILLAYLKMKDFKHL-RVLLSEL  409 (510)
Q Consensus       383 ~~~~~~li~~~~~~g~~~~A-~~~~~~m  409 (510)
                      ..+|..+...|.+.|+.++| ...+++.
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            34455555555555655555 4444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.23  E-value=8.8e-06  Score=68.90  Aligned_cols=121  Identities=11%  Similarity=0.079  Sum_probs=84.6

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--HH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQA-YGKYKMY--DE  227 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~  227 (510)
                      ..|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+... |.+.|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence            4577777888887776553 336677888888888888888888888887665322 56666777777 6677877  88


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010459          228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR  274 (510)
Q Consensus       228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  274 (510)
                      |...|++..+.. +.+...|..+...|...|++++|...|++..+..
T Consensus       100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            888888877654 3356677777778888888888888888877653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.23  E-value=6.3e-06  Score=67.84  Aligned_cols=98  Identities=12%  Similarity=0.065  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+.+.|++++|.+.|++....... +...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            345556666666666666666666666654322 55566666666666666666666666666543 2345566666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHC
Q 010459          254 FACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~  273 (510)
                      |.+.|++++|...|++..+.
T Consensus       114 ~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            66666666666666666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.22  E-value=3.1e-05  Score=73.25  Aligned_cols=151  Identities=10%  Similarity=0.019  Sum_probs=94.4

Q ss_pred             cCCCCcHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHH
Q 010459          116 SSRSRQIPQVFDMWKNIEKSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--------------LEIYNSI  180 (510)
Q Consensus       116 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~l  180 (510)
                      .+++++|.+.|+....   ..| +...+..+-..|.+.|++++|+..|++..+......              ...|..+
T Consensus       126 L~~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence            3455566555543221   012 345677788888888888888888888876532211              3666677


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      ..+|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|...|++..+.. +.+...+..+...+.+.|+.
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777666432 255666666667777777777777777666543 23455666666666666666


Q ss_pred             HHH-HHHHHHHH
Q 010459          261 KRM-EGTYKSML  271 (510)
Q Consensus       261 ~~A-~~~~~~m~  271 (510)
                      ++| ..+|+.|.
T Consensus       281 ~~a~~~~~~~~~  292 (336)
T 1p5q_A          281 LAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666 33444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.20  E-value=6.1e-05  Score=59.74  Aligned_cols=98  Identities=9%  Similarity=-0.011  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 010459          210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY  289 (510)
Q Consensus       210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  289 (510)
                      ..+...-..|.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|++.|++..+.... +...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            456677788888999999999998887664 457888888888899999999999999888876432 567888888888


Q ss_pred             HhcCChhHHHHHHHHHHhcC
Q 010459          290 MNFGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       290 ~~~g~~~~a~~~~~~m~~~~  309 (510)
                      ...|++++|.+.|+..++..
T Consensus        92 ~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHHHHHHC
Confidence            88999999999988888754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.19  E-value=8.5e-05  Score=67.21  Aligned_cols=190  Identities=12%  Similarity=-0.016  Sum_probs=104.6

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCC---------------
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSI-------IHGYSKIGKFNEALLFLNEMKEMNLSPQ---------------  208 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~---------------  208 (510)
                      ..++...|.+.|.+..+... -....|+.+       ...+.+.++..+++..++.-.+  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            46777777777777776532 245667666       3444444444444444444332  1111               


Q ss_pred             -------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC--H
Q 010459          209 -------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR--S  279 (510)
Q Consensus       209 -------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~  279 (510)
                             ...+-.+...+...|++++|.++|+.+...+  |+....-.+-..+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1122345556667777777777777776543  333244444456777777777777776443321 111  2


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q 010459          280 STMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLK--EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR  346 (510)
Q Consensus       280 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  346 (510)
                      ..+..+-.++...|++++|+..|++.......|.  .........++.+.|+.++|...++.+....+.
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            2455666677777777777777777764332243  223344444555556665555555555444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.18  E-value=3.7e-05  Score=72.68  Aligned_cols=132  Identities=11%  Similarity=0.008  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--------------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      +...|..+...|.+.|++++|++.|++..+......              ..+|..+..+|.+.|++++|...|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467788899999999999999999999887543221              478888888888889999999888888776


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 010459          239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKM-EKFYKRLL  306 (510)
Q Consensus       239 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a-~~~~~~m~  306 (510)
                      . +.+...|..+-.+|...|++++|...|++..+.... +...+..+..++...|+.+++ ..++..|.
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 447778888888888888888888888888766422 566777777888888888777 44555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.16  E-value=1.1e-05  Score=66.22  Aligned_cols=91  Identities=12%  Similarity=0.013  Sum_probs=36.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      ..+...+.+.|++++|...|++...... .+...|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+|...
T Consensus        25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           25 YSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence            3333344444444444444444433221 133333444444444444444444444433322 12333333444444444


Q ss_pred             CCHHHHHHHHHHH
Q 010459          258 GLLKRMEGTYKSM  270 (510)
Q Consensus       258 g~~~~A~~~~~~m  270 (510)
                      |++++|.+.|+..
T Consensus       103 g~~~~A~~~~~~a  115 (148)
T 2vgx_A          103 GELAEAESGLFLA  115 (148)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            4444444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.13  E-value=0.00011  Score=56.62  Aligned_cols=95  Identities=12%  Similarity=0.111  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG  220 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  220 (510)
                      .+..+...+...|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.+++..+... .+...+..+...+.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            33444444445555555555555544332 12344444444455555555555555544444321 13344444444444


Q ss_pred             ccCCHHHHHHHHHHHHh
Q 010459          221 KYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~  237 (510)
                      +.|++++|...|++..+
T Consensus        84 ~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HTTCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            44555555554444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.12  E-value=7.1e-06  Score=71.05  Aligned_cols=148  Identities=10%  Similarity=0.051  Sum_probs=71.0

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHH
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS--------------LEIY  177 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~  177 (510)
                      ....|.++.+.+.|+.-..  ........+..+-..+.+.|++++|+..|++..+.... |+              ...|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             --------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            3344556666655542211  01112344556666777777777777777777654211 10              1455


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          178 NSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       178 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      ..+..+|.+.|++++|+..+++..+... .+..++..+..+|...|++++|...|++..+.. +.+...+..+...+...
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence            5555555555666666655555554321 244455555555555555555555555554432 22344444444444444


Q ss_pred             CCHHHHH
Q 010459          258 GLLKRME  264 (510)
Q Consensus       258 g~~~~A~  264 (510)
                      ++.+++.
T Consensus       170 ~~~~~~~  176 (198)
T 2fbn_A          170 KEARKKD  176 (198)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            4444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.12  E-value=0.00013  Score=56.21  Aligned_cols=98  Identities=13%  Similarity=0.044  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+...|++++|.+.|++...... .+...+..+...+.+.|++++|...+++..+.. +.+...|..+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            45566666667777777777777777665432 255566666666667777777777776666543 2345666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHC
Q 010459          254 FACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +...|++++|.+.|++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            66777777777777666654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.09  E-value=0.00012  Score=66.20  Aligned_cols=197  Identities=10%  Similarity=-0.079  Sum_probs=139.3

Q ss_pred             hcCCCCcHHHHHHHHHhhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------
Q 010459          115 NSSRSRQIPQVFDMWKNIEKSRINEFNSQKI-------IGMLCEEGLMEEAVRAFQEMEGFALKPS--------------  173 (510)
Q Consensus       115 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------  173 (510)
                      ..++...|.+.|......  .+-....|..+       ...+.+.++..+++..+..-.+  +.|+              
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence            578999999999998753  23345567666       4555555555555555544443  1221              


Q ss_pred             --------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--
Q 010459          174 --------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD--  243 (510)
Q Consensus       174 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--  243 (510)
                              ...+-.....+...|++++|.++|+.+...+  |+....-.+-..+.+.+++++|+..|+...+.. .|.  
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence                    2234456778889999999999999987654  555466666678899999999999998665432 111  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 010459          244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKL  320 (510)
Q Consensus       244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  320 (510)
                      ...+..+-.++.+.|++++|++.|++.......|.  .......-.++.+.|+.++|..+|+++....  |+.....+|
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL  247 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence            23667778899999999999999999885444354  3355666778889999999999999999865  444444333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.08  E-value=6.7e-06  Score=71.19  Aligned_cols=158  Identities=9%  Similarity=-0.062  Sum_probs=89.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--------------H
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQ--------------S  209 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~--------------~  209 (510)
                      .+......|+++.+.+.|+.-.... ......|..+...+.+.|++++|++.|++..+.... |+              .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            3344445566666666665322110 113456777788888899999999999888764321 11              2


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 010459          210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY  289 (510)
Q Consensus       210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  289 (510)
                      .+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|.+.|++..+.... +...+..+...+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence            567777777777788888888877776653 345667777777777778888888777777655321 445555555555


Q ss_pred             HhcCChhHHH-HHHHHH
Q 010459          290 MNFGMLDKME-KFYKRL  305 (510)
Q Consensus       290 ~~~g~~~~a~-~~~~~m  305 (510)
                      ...++.+++. ..+..+
T Consensus       167 ~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            5555555444 334333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.00014  Score=57.31  Aligned_cols=95  Identities=12%  Similarity=-0.064  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  255 (510)
                      .|..+...+.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|...|++..+.. +.+...|..+-.++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            344444455555555555555555544321 134455555555555555555555555554432 223445555555555


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 010459          256 CAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~  272 (510)
                      ..|++++|.+.|++..+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            55555555555555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.04  E-value=4.8e-05  Score=62.32  Aligned_cols=99  Identities=9%  Similarity=-0.043  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459          208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD  287 (510)
Q Consensus       208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  287 (510)
                      +...+..+...+.+.|++++|...|++..... +.+...|..+-.+|...|++++|+..|++....... +...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence            44456667777778888888888888776654 346777777777888888888888888877765322 4566777777


Q ss_pred             HHHhcCChhHHHHHHHHHHhc
Q 010459          288 AYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       288 ~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ++...|++++|.+.|+...+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            778888888888888777653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.02  E-value=5.4e-05  Score=57.89  Aligned_cols=56  Identities=11%  Similarity=0.089  Sum_probs=21.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK  201 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (510)
                      +...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|.+.|++..
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3333444444444444444433321 1123333333333444444444444444333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=0.0002  Score=57.87  Aligned_cols=97  Identities=14%  Similarity=0.019  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS----LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYD  213 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  213 (510)
                      +...+..+...+.+.|++++|...|++..+.  .|+    ...|..+...|.+.|++++|++.+++..+... .+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence            3344444445555555555555555555443  233    34444444555555555555555554444321 1334444


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHh
Q 010459          214 GLIQAYGKYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       214 ~li~~~~~~g~~~~a~~~~~~m~~  237 (510)
                      .+...|.+.|++++|...|++..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444445555555555555554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=0.00028  Score=57.04  Aligned_cols=99  Identities=13%  Similarity=0.021  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010459          172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITY  247 (510)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  247 (510)
                      .+...|..+...+.+.|++++|.+.|++..+.  .|+    ...|..+...|.+.|++++|...+++..+.. +.+...|
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            35677778888888888888888888887764  355    5677777777888888888888888776653 3356677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          248 NLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       248 ~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      ..+...|...|++++|...|++..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            77777788888888888888877754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.00018  Score=56.66  Aligned_cols=97  Identities=19%  Similarity=0.062  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      ..|..+-..+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.... +..+|..+..+|
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            345556666777777777777777776653 235677777777777788888888877777665422 466777777777


Q ss_pred             HccCCHHHHHHHHHHHHhC
Q 010459          220 GKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~  238 (510)
                      ...|++++|...|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            7788888888777776643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.99  E-value=0.00017  Score=57.64  Aligned_cols=96  Identities=9%  Similarity=-0.141  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+...|++++|...|++..+... .+...|..+...|.+.|++++|...|++..+.. +.+...|..+...
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence            34444444444444444444444444433221 123344444444444444444444444444332 1233344444444


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 010459          254 FACAGLLKRMEGTYKSML  271 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~  271 (510)
                      |...|++++|...|++..
T Consensus        87 ~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            444444444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.97  E-value=0.0086  Score=55.66  Aligned_cols=45  Identities=13%  Similarity=0.010  Sum_probs=23.9

Q ss_pred             cccHHHHHHHHHHCCCCcCHHHHHH--HH---HHHHcCCChhHHHHHHHhhhh
Q 010459          364 HRGIDSVVREMESAKVRWNVTTANI--IL---LAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       364 ~~~a~~~~~~m~~~g~~p~~~~~~~--li---~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      .+++++.++++.+..+  |. .|+.  ++   .+....|..+++...+.++++
T Consensus       254 l~~el~~~~elle~~p--d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          254 LQSELESCKELQELEP--EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHHHHHHHHHHHHHCT--TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCc--cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            3556666666665433  22 2321  11   122245666777777777775

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.96  E-value=0.00012  Score=59.22  Aligned_cols=17  Identities=18%  Similarity=0.102  Sum_probs=6.3

Q ss_pred             HHHHHcCCHHHHHHHHH
Q 010459          252 QEFACAGLLKRMEGTYK  268 (510)
Q Consensus       252 ~~~~~~g~~~~A~~~~~  268 (510)
                      .+|...|++++|.+.|+
T Consensus        94 ~~~~~~g~~~~A~~~~~  110 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFY  110 (142)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            33333333333333333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.96  E-value=9.3e-05  Score=58.35  Aligned_cols=27  Identities=15%  Similarity=0.126  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          246 TYNLLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       246 ~~~~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                      +|..+...|...|++++|.+.|+...+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            333444444444444444444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.96  E-value=0.00011  Score=59.51  Aligned_cols=97  Identities=9%  Similarity=-0.020  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      ..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++....... +...+..+..+|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence            345556667777888888888888877654 236777788888888888888888888887775432 556777777888


Q ss_pred             HccCCHHHHHHHHHHHHhC
Q 010459          220 GKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~  238 (510)
                      ...|++++|...|+...+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            8888888888888877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.94  E-value=0.00022  Score=56.11  Aligned_cols=113  Identities=12%  Similarity=0.039  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--ccC----HHHH
Q 010459          209 SDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM--HLR----SSTM  282 (510)
Q Consensus       209 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~  282 (510)
                      ...+..+...+...|++++|...|++..+.. +.+...|..+...|...|++++|...+++......  .++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3456677777888888888888888877654 34677788888888888999999988888775431  122    6678


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010459          283 VAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY  324 (510)
Q Consensus       283 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  324 (510)
                      ..+..++...|++++|.+.++...+..  |+......+....
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~  122 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence            888899999999999999999998754  4655555444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.0016  Score=63.54  Aligned_cols=194  Identities=10%  Similarity=-0.085  Sum_probs=127.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPS----------------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMN-LSPQS-  209 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~-  209 (510)
                      .+.+.|++++|++.|....+.....+                ..++..+...|.+.|++++|.+.+......- ..++. 
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~   92 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK   92 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence            45566777777777777765421111                1246778888888899988888888765421 11222 


Q ss_pred             ---HHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C--Ccc
Q 010459          210 ---DTYDGLIQAYGKYKMYDEIDMCLKMMKL----DGCSPD-HITYNLLIQEFACAGLLKRMEGTYKSMLTK--R--MHL  277 (510)
Q Consensus       210 ---~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p  277 (510)
                         .+.+.+-..+...|+.+.|..+++....    .+..+. ..++..+...|...|++++|..++++....  +  -.|
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  172 (434)
T 4b4t_Q           93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP  172 (434)
T ss_dssp             HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence               1223333444456888898888877653    222222 456778889999999999999999887642  2  122


Q ss_pred             -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 010459          278 -RSSTMVAILDAYMNFGMLDKMEKFYKRLLNS--RTPLK----EDLVRKLAEVYIKNYMFSRLDDLGDDLA  341 (510)
Q Consensus       278 -~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~  341 (510)
                       ...++..++..|...|++++|..+++.....  .+..+    ...+..+...+...+++++|...+....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             2457888899999999999999999887642  22222    2344556666677788888877765543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.93  E-value=0.014  Score=54.29  Aligned_cols=48  Identities=13%  Similarity=0.057  Sum_probs=29.2

Q ss_pred             CChhHHHHHHHhhhhCCCCCCHHHHHH-----HHHhhhhcCccchHHHHHHHcCCc
Q 010459          397 KDFKHLRVLLSELPTRHVKPDIVTIGI-----LYDARRIGFDGTGALEMWKRIGFL  447 (510)
Q Consensus       397 g~~~~A~~~~~~m~~~g~~p~~~t~~~-----li~~~~~~~~~~~a~~~~~~~~~~  447 (510)
                      +.++++++.++++.+.  .||. .|..     +..+....+..+++...+.++...
T Consensus       252 ~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          252 TVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            4568889999998863  4664 3322     222223455667778888777443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.91  E-value=0.00023  Score=59.16  Aligned_cols=97  Identities=7%  Similarity=-0.030  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|...|++..+.. +.+...|..+-..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            344555555555555555555555555443211 44555555555555555555555555555443 2245555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 010459          254 FACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~  272 (510)
                      |...|++++|.+.|++..+
T Consensus        89 ~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHH
Confidence            5556666666665555554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.90  E-value=0.00032  Score=56.01  Aligned_cols=100  Identities=8%  Similarity=-0.009  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 010459          207 PQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAIL  286 (510)
Q Consensus       207 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  286 (510)
                      .+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence            467788888888888999999999998887664 346778888888888899999999998888875432 567788888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhc
Q 010459          287 DAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       287 ~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      .++...|++++|.+.+....+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            8888889999998888887653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.90  E-value=0.00048  Score=57.17  Aligned_cols=99  Identities=10%  Similarity=0.004  Sum_probs=85.0

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 010459          208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILD  287 (510)
Q Consensus       208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  287 (510)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|+..|++..+.... +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            45677888889999999999999999988764 347888999999999999999999999998876432 5788888999


Q ss_pred             HHHhcCChhHHHHHHHHHHhc
Q 010459          288 AYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       288 ~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      +|...|++++|.+.|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            999999999999999998864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.90  E-value=9.3e-05  Score=56.51  Aligned_cols=100  Identities=12%  Similarity=0.041  Sum_probs=84.9

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 010459          103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKP--SLEIYNSI  180 (510)
Q Consensus       103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l  180 (510)
                      ...+..+...+...|++++|...|+...+.  .+.+...+..+...|.+.|++++|...|++..+.. +.  +...|..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            446667888899999999999999998752  34567888999999999999999999999998874 23  57889999


Q ss_pred             HHHHHhc-CChHHHHHHHHHHHHCCC
Q 010459          181 IHGYSKI-GKFNEALLFLNEMKEMNL  205 (510)
Q Consensus       181 i~~~~~~-g~~~~a~~~~~~m~~~g~  205 (510)
                      ...+.+. |++++|.+.|++......
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            9999999 999999999999987643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.89  E-value=0.00029  Score=55.80  Aligned_cols=95  Identities=12%  Similarity=0.030  Sum_probs=42.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CccC----HHHHHHH
Q 010459          212 YDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR--MHLR----SSTMVAI  285 (510)
Q Consensus       212 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~l  285 (510)
                      +..|-..+.+.|++++|...|++..+.. +.+...|+.+-.+|.+.|++++|++.|++..+..  ..++    ..+|..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3344444444444444444444444332 2234444444445555555555555544443321  0001    1234444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh
Q 010459          286 LDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       286 l~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      -.++...|++++|.+.|++.++
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555555555555555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.88  E-value=0.00022  Score=56.49  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=26.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK  201 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (510)
                      .+-..|.+.|++++|+..|++..+.. +.+...|+.+-.+|.+.|++++|++.|++..
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            34444445555555555555444432 1234444444455555555555555544443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.79  E-value=0.00022  Score=55.91  Aligned_cols=89  Identities=13%  Similarity=0.002  Sum_probs=40.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010459          146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY  225 (510)
Q Consensus       146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  225 (510)
                      ...+.+.|++++|+..|++..+.. +.+...|..+-.++.+.|++++|+..|++..+.... +...+..+...|.+.|++
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~  101 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA  101 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence            334444455555555555444432 113444444444444455555555554444443211 333444444444444444


Q ss_pred             HHHHHHHHHHH
Q 010459          226 DEIDMCLKMMK  236 (510)
Q Consensus       226 ~~a~~~~~~m~  236 (510)
                      ++|...|++..
T Consensus       102 ~~A~~~~~~al  112 (121)
T 1hxi_A          102 NAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.79  E-value=0.00016  Score=59.37  Aligned_cols=60  Identities=17%  Similarity=0.145  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS----LEIYNSIIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (510)
                      ++..+...|...|++++|...+++..+.... ++    ..++..+...+...|++++|.+.+++.
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445555555556666666655554432100 01    124444555555555555555555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.79  E-value=0.00017  Score=59.09  Aligned_cols=134  Identities=13%  Similarity=0.103  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-C
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQ----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSP-D  243 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~  243 (510)
                      ..++..+...|...|++++|++.+++..+.... ++    ..++..+...|...|++++|...+++..+.    +-.+ .
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            346777888888999999999999887653111 11    246777888888889999999888886542    1111 1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          244 HITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      ...+..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|.+.+++..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            446667777888888999888888876532    2111 134566777778888888888888877654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.78  E-value=0.00024  Score=55.75  Aligned_cols=92  Identities=11%  Similarity=-0.056  Sum_probs=46.6

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI  187 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  187 (510)
                      .+...+.+.|++++|...|+...+  ..+.+...|..+-.++.+.|++++|+..|++..+... .+...|..+...|.+.
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            344445555555555555555543  1222444555555555555555555555555554421 1344555555555555


Q ss_pred             CChHHHHHHHHHHHH
Q 010459          188 GKFNEALLFLNEMKE  202 (510)
Q Consensus       188 g~~~~a~~~~~~m~~  202 (510)
                      |++++|++.|++..+
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.001  Score=64.84  Aligned_cols=198  Identities=9%  Similarity=-0.050  Sum_probs=140.8

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 010459          110 IRFLKNSSRSRQIPQVFDMWKNIEKSRIN---------------EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFA-LKPS  173 (510)
Q Consensus       110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~  173 (510)
                      .+.+.+.|++++|.+.|..+.+......+               ...+..+...|.+.|++++|.+.+....+.- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            45567889999999999988763222222               1246788999999999999999998876421 1112


Q ss_pred             H----HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CC--
Q 010459          174 L----EIYNSIIHGYSKIGKFNEALLFLNEMKE----MNLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD--GC--  240 (510)
Q Consensus       174 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--  240 (510)
                      .    .+.+.+-..+...|+.+.|.++++....    .+..+. ..++..|...|...|++++|..++++....  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    2233333444567889999999988753    333333 457788999999999999999999987642  11  


Q ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          241 SP-DHITYNLLIQEFACAGLLKRMEGTYKSMLTK----RMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       241 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      .+ ...++..++..|...|++++|..++++....    +.+|.  ...+..+...+...+++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            11 2557888999999999999999999887642    22212  24566666777888999999988877754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.69  E-value=0.00011  Score=73.02  Aligned_cols=118  Identities=8%  Similarity=-0.043  Sum_probs=84.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE  227 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  227 (510)
                      .|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.... +..+|..+..+|.+.|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            4556788888888888877653 235778888888888888888888888888876432 56788888888888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010459          228 IDMCLKMMKLDGCSPDHITYNLLIQE--FACAGLLKRMEGTYK  268 (510)
Q Consensus       228 a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~  268 (510)
                      |.+.|++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888877653 2234455555444  778888888888887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.67  E-value=0.00057  Score=67.48  Aligned_cols=124  Identities=7%  Similarity=-0.015  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459          139 EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPS--------------LEIYNSIIHGYSKIGKFNEALLFLNEMKEMN  204 (510)
Q Consensus       139 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  204 (510)
                      ...|..+-..|.+.|++++|+..|++..+......              ...|..+..+|.+.|++++|+..|++.++..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45677777888888899999888888776421111              3566666666666666666666666665543


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010459          205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRME  264 (510)
Q Consensus       205 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  264 (510)
                      .. +...|..+-.+|.+.|++++|...|++..+.. +-+...|..+...+.+.++.+++.
T Consensus       348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            22 45566666666666666666666666665543 224445555555565555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.67  E-value=0.00076  Score=66.95  Aligned_cols=121  Identities=14%  Similarity=0.087  Sum_probs=83.8

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCC
Q 010459          215 LIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGM  294 (510)
Q Consensus       215 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  294 (510)
                      +...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.... +..++..+..+|...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            3345667788999999998887664 346788888888888999999999999888876432 56778888888888889


Q ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhhcchhHHHHHHH
Q 010459          295 LDKMEKFYKRLLNSRTPLKEDLVRKLAEV--YIKNYMFSRLDDLGD  338 (510)
Q Consensus       295 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~  338 (510)
                      +++|.+.+++..+.. +.+...+..+..+  +.+.|++++|.+.+.
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999988888887653 1122233333333  666666666666544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.67  E-value=0.0013  Score=51.60  Aligned_cols=90  Identities=10%  Similarity=-0.012  Sum_probs=40.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHc
Q 010459          147 GMLCEEGLMEEAVRAFQEMEGFALKPSL---EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--SDTYDGLIQAYGK  221 (510)
Q Consensus       147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~  221 (510)
                      ..+.+.|++++|...|+...+.... +.   ..|..+...+.+.|++++|...|++..+......  ..++..+...|.+
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            3344455555555555554443211 11   2444444455555555555555555444321100  3334444444555


Q ss_pred             cCCHHHHHHHHHHHHh
Q 010459          222 YKMYDEIDMCLKMMKL  237 (510)
Q Consensus       222 ~g~~~~a~~~~~~m~~  237 (510)
                      .|++++|...|++..+
T Consensus        89 ~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           89 EGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.62  E-value=0.0017  Score=50.99  Aligned_cols=93  Identities=12%  Similarity=0.039  Sum_probs=55.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 010459          179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQS---DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPD---HITYNLLIQ  252 (510)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~  252 (510)
                      .+...+.+.|++++|.+.|++..+.... +.   ..+..+...|.+.|++++|...|++..+.. +.+   ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence            3445556667777777777766654321 12   355556666666777777777776666542 112   445555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHC
Q 010459          253 EFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      .+.+.|++++|...|++..+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666667777777776666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.56  E-value=0.00012  Score=56.94  Aligned_cols=85  Identities=6%  Similarity=-0.079  Sum_probs=39.3

Q ss_pred             cCCCCcHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010459          116 SSRSRQIPQVFDMWKNIEK--SRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEA  193 (510)
Q Consensus       116 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a  193 (510)
                      .|++++|.+.|+...+ .+  .+.+...+..+...|.+.|++++|+..|++..+... -+...|..+..++.+.|++++|
T Consensus         3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence            3555555555555543 11  112233445555555555555555555555554421 1344455555555555555555


Q ss_pred             HHHHHHHHH
Q 010459          194 LLFLNEMKE  202 (510)
Q Consensus       194 ~~~~~~m~~  202 (510)
                      ++.|++..+
T Consensus        81 ~~~~~~al~   89 (117)
T 3k9i_A           81 VELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.55  E-value=0.00022  Score=55.45  Aligned_cols=105  Identities=14%  Similarity=0.047  Sum_probs=78.9

Q ss_pred             hcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFA--LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  228 (510)
                      ..|++++|+..|++..+.+  -+.+...|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            4688999999999999764  1234678899999999999999999999999886543 678889999999999999999


Q ss_pred             HHHHHHHHhCC-CCCCHHHHHHHHHHHHH
Q 010459          229 DMCLKMMKLDG-CSPDHITYNLLIQEFAC  256 (510)
Q Consensus       229 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~  256 (510)
                      ...|++..+.. -.|+...|...|..|.+
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            99999987652 12334455555555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.54  E-value=0.0009  Score=66.05  Aligned_cols=125  Identities=12%  Similarity=0.053  Sum_probs=78.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          173 SLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQ--------------SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      +...|..+...|.+.|++++|+..|++..+......              ..+|..+..+|.+.|++++|...|++..+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            345677888888889999999999988876432211              356666666666777777777777666654


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHH
Q 010459          239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKME  299 (510)
Q Consensus       239 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~  299 (510)
                      . +.+...|..+-.+|...|++++|...|++..+.... +...+..+..++.+.++.+++.
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            3 335666666666666667777777766666654211 3344555555555555555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.51  E-value=0.0011  Score=63.30  Aligned_cols=122  Identities=16%  Similarity=0.058  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFA---------------LKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMN  204 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  204 (510)
                      ..+..+-..|.+.|++++|+..|++..+.-               -+.+...|..+..+|.+.|++++|++.+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            346667778888888888888888776410               01123445555555555555555555555554432


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459          205 LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM  263 (510)
Q Consensus       205 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  263 (510)
                      .. +...|..+..+|.+.|++++|...|++..+.. +.+...+..+...+...++.+++
T Consensus       304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            11 34445555555555555555555555544432 12334444444444444444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.48  E-value=0.0012  Score=63.00  Aligned_cols=139  Identities=9%  Similarity=-0.099  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEF  254 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  254 (510)
                      ..|..+...+.+.|++++|++.|++..+.-  |+.          ......+       +..+.. +.+...|..+..+|
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~~-~~~~~~~~nla~~~  283 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKLQ-PVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence            457777788888888888888888776510  000          0000000       000000 12344555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHH
Q 010459          255 ACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLD  334 (510)
Q Consensus       255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  334 (510)
                      .+.|++++|++.+++..+... -+...|..+..+|...|++++|.+.+++..+.. +.+......+...+.+.+..+++.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666655554321 134555555555666666666666666555443 224444555555555555555444


Q ss_pred             H
Q 010459          335 D  335 (510)
Q Consensus       335 ~  335 (510)
                      +
T Consensus       362 k  362 (370)
T 1ihg_A          362 K  362 (370)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.43  E-value=0.0018  Score=53.39  Aligned_cols=97  Identities=11%  Similarity=-0.003  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEM-------NL----------SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      .|......+.+.|++++|++.|.+..+.       +-          ..+...|..+..+|.+.|++++|...+++..+.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3444445555555555555555554332       00          002234455555555555555555555555544


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          239 GCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       239 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      . +.+...|..+-.+|...|++++|...|++..+.
T Consensus        93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            3 234455555555555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.38  E-value=0.02  Score=57.91  Aligned_cols=185  Identities=9%  Similarity=-0.031  Sum_probs=111.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010459          154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK----------FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK  223 (510)
Q Consensus       154 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g  223 (510)
                      .-++|++.++++.+... -+...|+.--..+.+.|+          ++++++.++.+.+...+ +..+|+.---.+.+.+
T Consensus        44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            34567777777776642 255667766555555555          77777777777765544 6667777666667777


Q ss_pred             --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 010459          224 --MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG-LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEK  300 (510)
Q Consensus       224 --~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~  300 (510)
                        +++++...++++.+.. +.|...|+----...+.| .++++++.++++.+..+. |...|+-....+.+.+....   
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~---  196 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD---  196 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC---
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc---
Confidence              5677777777777665 456777776666666667 677777777777665443 55566555444443211100   


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcc
Q 010459          301 FYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLS  363 (510)
Q Consensus       301 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  363 (510)
                             .+.. .          -...+.++++.+.+.......+.+..+|+..-..+...+.
T Consensus       197 -------~~~~-~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          197 -------SGPQ-G----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             -------SSSC-C----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             -------cccc-c----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence                   0000 0          0001334555566556666667777777776666655554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.36  E-value=0.00055  Score=64.62  Aligned_cols=146  Identities=12%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY  219 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  219 (510)
                      ..+..+-..+.+.|++++|...|++..+.  .|+...       +...++.+++...+.          ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            34556666677778888888888776654  333321       111222222222111          12555566666


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHH-HHhcCChhH
Q 010459          220 GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLR-SSTMVAILDA-YMNFGMLDK  297 (510)
Q Consensus       220 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~  297 (510)
                      .+.|++++|...|++..+.. +.+...|..+-.+|...|++++|...|++..+.  .|+ ...+..+... ....+..++
T Consensus       241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666655443 234556666666666666666666666665433  222 2222222222 122344555


Q ss_pred             HHHHHHHHHh
Q 010459          298 MEKFYKRLLN  307 (510)
Q Consensus       298 a~~~~~~m~~  307 (510)
                      +..+|..|..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            5566655543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.34  E-value=0.0022  Score=52.94  Aligned_cols=115  Identities=8%  Similarity=-0.087  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHH
Q 010459          279 SSTMVAILDAYMNFGMLDKMEKFYKRLLNSR------TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWC  352 (510)
Q Consensus       279 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  352 (510)
                      ...+...-..+.+.|++++|...|...++.-      -.|+...+                       ....+.....|.
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~   67 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------------VELDRKNIPLYA   67 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------HHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------HHHHHHHHHHHH
Confidence            3456666777778888888888887766430      01110000                       011233455677


Q ss_pred             HHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH
Q 010459          353 LRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV  419 (510)
Q Consensus       353 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  419 (510)
                      .+..+|...|++++|+..+++..+..+. +...|..+..+|...|++++|...|++..+.  .|+..
T Consensus        68 nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~  131 (162)
T 3rkv_A           68 NMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA  131 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence            7777778888888888888888776544 6778888888888899999999988888763  46544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.31  E-value=0.00091  Score=66.19  Aligned_cols=132  Identities=6%  Similarity=0.048  Sum_probs=91.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHC---CC---ccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCC----HHHHH
Q 010459          253 EFACAGLLKRMEGTYKSMLTK---RM---HLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNS---RTPLK----EDLVR  318 (510)
Q Consensus       253 ~~~~~g~~~~A~~~~~~m~~~---g~---~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~  318 (510)
                      .+...|++++|+.++++..+.   -+   .|+ ..+++.|..+|...|++++|+.++.+.++.   -+.|+    ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355789999999999887642   12   222 467889999999999999999999887642   11222    24567


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010459          319 KLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKD  398 (510)
Q Consensus       319 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  398 (510)
                      .|...|...|++++|..++                           ++|+++++.......+-...+.+.+-.++...++
T Consensus       398 nLa~~~~~~G~~~eA~~~~---------------------------~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMI---------------------------CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHH---------------------------HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH---------------------------HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence            7777788888887777773                           3455555554433222233455666677888888


Q ss_pred             hhHHHHHHHhhhh
Q 010459          399 FKHLRVLLSELPT  411 (510)
Q Consensus       399 ~~~A~~~~~~m~~  411 (510)
                      +++|..+|..+++
T Consensus       451 ~~~ae~~~~~~~~  463 (490)
T 3n71_A          451 FRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.30  E-value=0.013  Score=59.39  Aligned_cols=140  Identities=5%  Similarity=-0.095  Sum_probs=112.2

Q ss_pred             HHhcCCC-CcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          113 LKNSSRS-RQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGL----------MEEAVRAFQEMEGFALKPSLEIYNSII  181 (510)
Q Consensus       113 ~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li  181 (510)
                      ..+.|.. ++|.+.++.+..  -.+-+..+|+.--..+.+.|+          ++++++.++.+.+.. +.+..+|+.--
T Consensus        38 ~~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~  114 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC  114 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            3444544 577999998875  233455667776666666676          999999999999876 44889999998


Q ss_pred             HHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010459          182 HGYSKIG--KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACA  257 (510)
Q Consensus       182 ~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  257 (510)
                      -.+.+.+  +++++++.++++.+...+ |..+|+.--..+.+.| .++++.+.++++.+.. +.|...|+-.-..+.+.
T Consensus       115 w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          115 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhh
Confidence            8999999  779999999999998765 8899999888888889 8999999999998876 45888998877776663

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.30  E-value=0.0097  Score=47.59  Aligned_cols=110  Identities=8%  Similarity=-0.044  Sum_probs=54.0

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 010459          189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRME  264 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~  264 (510)
                      +.++|++.|++..+.| .|+..    |-..|...+.+++|.+.|++..+.|   +...+..|-..|..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3445555555555544 12222    4444444444555555555555432   33444444444544    45555555


Q ss_pred             HHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 010459          265 GTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       265 ~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~  309 (510)
                      +.|++..+.|   +...+..|-..|..    .++.++|.+.++...+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555555443   33444444455554    455555555555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.28  E-value=0.00075  Score=63.70  Aligned_cols=151  Identities=11%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+.+.|++++|...|++....  .|+...       +...++.+++...+   .       ...|..+-.+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence            455777788888999999999999998764  344332       23344444443322   1       1378888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhhcchhH
Q 010459          254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVY-IKNYMFSR  332 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~~~~  332 (510)
                      |.+.|++++|+..+++..+... -+...|..+..+|...|++++|.+.|+...+.. +-+...+..|.... ...+..+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987642 267889999999999999999999999987643 22344445554442 23455666


Q ss_pred             HHHHHHHHHhhcC
Q 010459          333 LDDLGDDLASRIG  345 (510)
Q Consensus       333 a~~~~~~~~~~~~  345 (510)
                      +...+..+....+
T Consensus       318 a~~~~~~~l~~~p  330 (338)
T 2if4_A          318 QKEMYKGIFKGKD  330 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHhhCCCC
Confidence            7777666655443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.28  E-value=0.0079  Score=48.14  Aligned_cols=112  Identities=10%  Similarity=-0.066  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 010459          153 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEI  228 (510)
Q Consensus       153 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a  228 (510)
                      +++++|++.|++..+.| .|+..    |-..|...+.+++|++.|++..+.|   +...+..|-.+|..    .++.++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45677777777777666 22332    5555556666777777777777665   56667777777766    6777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 010459          229 DMCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRM  275 (510)
Q Consensus       229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  275 (510)
                      ...|++..+.|   +...+..|-..|..    .++.++|.+.|++..+.|.
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            77777777654   45566666667766    6777777777777776653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.28  E-value=0.00094  Score=66.11  Aligned_cols=122  Identities=12%  Similarity=0.050  Sum_probs=60.9

Q ss_pred             hcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHH
Q 010459          186 KIGKFNEALLFLNEMKEM---NLSP----QSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGC-SP-DHITYNLLI  251 (510)
Q Consensus       186 ~~g~~~~a~~~~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~~~~li  251 (510)
                      ..|++++|+.++++.++.   -+.|    ...+++.|...|...|++++|..++++..+     .|. .| ...+++.|-
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            445555555555554321   1111    233555566666666666666665555432     111 11 234555666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH-----CCC-ccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          252 QEFACAGLLKRMEGTYKSMLT-----KRM-HLRS-STMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       252 ~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      ..|...|++++|..++++..+     .|. .|+. .+...+-.++...+.+++|+.++.++.+
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666655432     121 1222 2333444555556666666666666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.24  E-value=0.0045  Score=50.52  Aligned_cols=95  Identities=14%  Similarity=0.067  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-----C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC
Q 010459          177 YNSIIHGYSKIGKFNEALLFLNEMKEMNLS-P-----Q-----SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD-----GC  240 (510)
Q Consensus       177 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-----~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~  240 (510)
                      +......+.+.|++++|++.|++..+.... |     +     ...|+.+-.++.+.|++++|...+++..+.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            344444555556666666666555442211 0     1     114444555555555555555555444432     00


Q ss_pred             CC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          241 SP-DHITY----NLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       241 ~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      .| +...|    ...-.++...|++++|+..|++..
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            12 23344    444444445555555555554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.15  E-value=0.0058  Score=49.84  Aligned_cols=96  Identities=11%  Similarity=-0.004  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC
Q 010459          142 SQKIIGMLCEEGLMEEAVRAFQEMEGFALKP------S-----LEIYNSIIHGYSKIGKFNEALLFLNEMKEM-----NL  205 (510)
Q Consensus       142 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~  205 (510)
                      +...-..+.+.|++++|+..|++..+.....      +     ...|+.+-.++.+.|++++|+..+++.++.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3444455666677777777777666542110      2     237888888888888888888888888764     12


Q ss_pred             CCC-HHHH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 010459          206 SPQ-SDTY----DGLIQAYGKYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       206 ~p~-~~t~----~~li~~~~~~g~~~~a~~~~~~m~~  237 (510)
                      .|| ...|    ...-.++...|++++|...|++..+
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            454 4567    7888888899999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.06  E-value=0.0077  Score=46.14  Aligned_cols=79  Identities=9%  Similarity=-0.015  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459          121 QIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (510)
                      .|.+.|+...+  ..+.+...+..+...|.+.|++++|+..|++..+.. +.+...|..+...|.+.|++++|...|++.
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445554442  222344555555555555666666666665555442 123445555555555555555555555554


Q ss_pred             HH
Q 010459          201 KE  202 (510)
Q Consensus       201 ~~  202 (510)
                      .+
T Consensus        80 l~   81 (115)
T 2kat_A           80 LA   81 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.00086  Score=51.04  Aligned_cols=26  Identities=15%  Similarity=-0.022  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      .+..+..+|.+.|++++|...|++..
T Consensus        40 ~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A           40 GYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            33333333334444444444443333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.05  E-value=0.0036  Score=48.05  Aligned_cols=63  Identities=13%  Similarity=0.024  Sum_probs=30.1

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      +...+..+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|...|++..
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444555555555555555444332 2234444445555555555555555555444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.01  E-value=0.0022  Score=52.17  Aligned_cols=99  Identities=9%  Similarity=-0.051  Sum_probs=69.0

Q ss_pred             hcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhccc----------ccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010459          327 NYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSH----------RGIDSVVREMESAKVRWNVTTANIILLAYLKM  396 (510)
Q Consensus       327 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  396 (510)
                      .+.+++|...+.......+.+...|+.+..++...++.          ++|+..|++..+..+. +..+|..+-.+|...
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence            34555566665656666666666666666555555544          4788888888877655 677888888888776


Q ss_pred             -----------CChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459          397 -----------KDFKHLRVLLSELPTRHVKPDIVTIGILYDAR  428 (510)
Q Consensus       397 -----------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~  428 (510)
                                 |++++|++.|++..+  +.|+...|...+...
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence                       489999999999987  468887776666643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.98  E-value=0.0086  Score=43.29  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=8.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 010459          144 KIIGMLCEEGLMEEAVRAFQEM  165 (510)
Q Consensus       144 ~li~~~~~~g~~~~A~~~~~~m  165 (510)
                      .+...|.+.|++++|...|++.
T Consensus        14 ~la~~~~~~~~~~~A~~~~~~a   35 (91)
T 1na3_A           14 NLGNAYYKQGDYDEAIEYYQKA   35 (91)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHH
Confidence            3333333444444444444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.95  E-value=0.0097  Score=42.98  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ...|..+...+.+.|++++|++.|++..+... .+..++..+...|.+.|++++|...|++..+.. +.+...+..+-..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            45566666667777777777777777665432 245566666777777777777777777766543 2345555555555


Q ss_pred             HHHc
Q 010459          254 FACA  257 (510)
Q Consensus       254 ~~~~  257 (510)
                      +.+.
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.0047  Score=46.74  Aligned_cols=65  Identities=12%  Similarity=0.062  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          208 QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       208 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|++.|++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34556666667777777777777777766543 335666777777777777777777777777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.64  E-value=0.065  Score=56.80  Aligned_cols=149  Identities=13%  Similarity=0.039  Sum_probs=86.3

Q ss_pred             HHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459          149 LCEEGLMEEAVR-AFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE  227 (510)
Q Consensus       149 ~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  227 (510)
                      ....+++++|.+ ++..+      |+......++..+.+.|.+++|+++.++-            ..-.......|++++
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHH
Confidence            345677777766 44211      21223366777777777777777665321            111334456788888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010459          228 IDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       228 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      |.++.+.+      .+...|..+-..+.+.|+++.|.+.|..+..         |..+...+...|+.+...++-+....
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            87775443      3667788888888888888888888877652         23344445556666665555544444


Q ss_pred             cCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459          308 SRTPLKEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       308 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      .|.      ++.-...|.+.|++++|.++
T Consensus       736 ~~~------~~~A~~~~~~~g~~~~a~~~  758 (814)
T 3mkq_A          736 TGK------FNLAFNAYWIAGDIQGAKDL  758 (814)
T ss_dssp             TTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred             cCc------hHHHHHHHHHcCCHHHHHHH
Confidence            431      22333344555555555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.47  E-value=0.018  Score=42.92  Aligned_cols=63  Identities=11%  Similarity=0.126  Sum_probs=32.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010459          138 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMK  201 (510)
Q Consensus       138 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  201 (510)
                      +...+..+-..|.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|.+.|++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334445555555555555555555555554421 134455555555555555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.46  E-value=0.019  Score=42.68  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      ...|..+-..|.+.|++++|++.|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444444444555555555555444443211 23344444444455555555555544443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.39  E-value=0.0095  Score=48.45  Aligned_cols=85  Identities=11%  Similarity=0.044  Sum_probs=41.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010459          152 EGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKF----------NEALLFLNEMKEMNLSPQSDTYDGLIQAYGK  221 (510)
Q Consensus       152 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  221 (510)
                      .+.+++|++.++...+.. +.+...|+.+-.++.+.+++          ++|+..|++..+.... +..+|..+-.+|.+
T Consensus        15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence            344555555555555443 22455555555555554443          3555555555443222 34455555555544


Q ss_pred             cC-----------CHHHHHHHHHHHHhC
Q 010459          222 YK-----------MYDEIDMCLKMMKLD  238 (510)
Q Consensus       222 ~g-----------~~~~a~~~~~~m~~~  238 (510)
                      .|           ++++|.+.|++..+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            42           455555555555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.91  E-value=0.1  Score=55.34  Aligned_cols=46  Identities=9%  Similarity=0.009  Sum_probs=23.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEM  200 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  200 (510)
                      ....|++++|.++.+.+      .+...|..+...+.+.++++.|.+.|..+
T Consensus       662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34445555555543322      24455555555555555555555555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.83  E-value=0.17  Score=47.37  Aligned_cols=73  Identities=14%  Similarity=0.087  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 010459          241 SPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLV  317 (510)
Q Consensus       241 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  317 (510)
                      +.+..+|.++...+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.+.+..+..  |...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence            4567777777666666788888888888887764  677777677777777888888888888777653  555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.68  E-value=0.061  Score=52.15  Aligned_cols=85  Identities=11%  Similarity=-0.047  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CccC-HHHHHHHHHH
Q 010459          223 KMYDEIDMCLKMMKLD---GCSP----DHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KR-MHLR-SSTMVAILDA  288 (510)
Q Consensus       223 g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll~~  288 (510)
                      |++++|+.++++..+.   -+.|    ...+++.+...|...|++++|..++++..+     .| -.|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4666666666665431   1111    235667777777777777777777776543     12 2233 3467777777


Q ss_pred             HHhcCChhHHHHHHHHHHh
Q 010459          289 YMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       289 ~~~~g~~~~a~~~~~~m~~  307 (510)
                      |...|++++|+.++++..+
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            7777777777777776653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.63  E-value=0.21  Score=46.70  Aligned_cols=73  Identities=14%  Similarity=0.040  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 010459          206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTM  282 (510)
Q Consensus       206 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  282 (510)
                      ..+..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.|++....  .|...||
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence            4577788877777777788999999998888774  77777777777788889999999888887765  4455554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.55  E-value=0.045  Score=53.16  Aligned_cols=86  Identities=8%  Similarity=0.012  Sum_probs=50.3

Q ss_pred             ccCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CccC-HHHHHHHH
Q 010459          221 KYKMYDEIDMCLKMMKLDG---CSP----DHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KR-MHLR-SSTMVAIL  286 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t~~~ll  286 (510)
                      +.|++++|..++++..+..   +.|    ...+++.+...|...|++++|+.++++...     .| -.|+ ..+++.|.
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            4456666666666655321   111    244566666677777777777777666542     12 2222 34566677


Q ss_pred             HHHHhcCChhHHHHHHHHHH
Q 010459          287 DAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       287 ~~~~~~g~~~~a~~~~~~m~  306 (510)
                      ..|...|++++|+.++++..
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHH
Confidence            77777777777777766654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.41  E-value=0.1  Score=50.65  Aligned_cols=98  Identities=9%  Similarity=-0.051  Sum_probs=66.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHh
Q 010459          286 LDAYMNFGMLDKMEKFYKRLLNS---RTPLK----EDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSH  358 (510)
Q Consensus       286 l~~~~~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  358 (510)
                      +..+.+.|++++|++++++..+.   -+.|+    ..+++.|...|...|++++|..+.                     
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~---------------------  352 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG---------------------  352 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH---------------------
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH---------------------
Confidence            45566778889999998888753   12222    245667777777777777777663                     


Q ss_pred             hhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          359 ACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       359 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                            ++++++++.......+-...+++.|...|...|++++|..++++..
T Consensus       353 ------~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          353 ------TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             ------HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                  3334455544333222235678889999999999999999998875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.38  E-value=0.063  Score=52.06  Aligned_cols=85  Identities=8%  Similarity=0.011  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHHC---CCcc---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCC-CCC-HHHHHHHHHH
Q 010459          258 GLLKRMEGTYKSMLTK---RMHL---R-SSTMVAILDAYMNFGMLDKMEKFYKRLLN-----SRT-PLK-EDLVRKLAEV  323 (510)
Q Consensus       258 g~~~~A~~~~~~m~~~---g~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~~  323 (510)
                      |++++|+.++++..+.   -+.|   + ..+++.+..+|...|++++|+.++++.++     .|- .|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            6888888888876542   1222   2 36788899999999999999999988764     221 222 3467888889


Q ss_pred             HHhhcchhHHHHHHHHHHh
Q 010459          324 YIKNYMFSRLDDLGDDLAS  342 (510)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~  342 (510)
                      |...|++++|..++++...
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            9999999999888776653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.20  E-value=0.063  Score=39.40  Aligned_cols=55  Identities=24%  Similarity=0.346  Sum_probs=29.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLE-IYNSIIHGYSKIGKFNEALLFLNEMKEM  203 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~  203 (510)
                      .+.+.|++++|...|++..+.. +.+.. .|..+...|...|++++|.+.|++..+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4445555566665555555442 12334 5555555555555555565555555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.89  E-value=0.069  Score=39.19  Aligned_cols=51  Identities=10%  Similarity=-0.034  Sum_probs=23.4

Q ss_pred             hhcccccHHHHHHHHHHCCCCcCHH-HHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          360 CLLSHRGIDSVVREMESAKVRWNVT-TANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       360 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      ..|+.++|.+.|++..+.... +.. .|..+..+|.+.|++++|...|++..+
T Consensus        12 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A           12 NQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334444444444444443222 333 444444455555555555555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.75  E-value=1.1  Score=36.86  Aligned_cols=102  Identities=10%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010459          147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYD  226 (510)
Q Consensus       147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  226 (510)
                      +...++|+++.|.++.+++.      +...|..|-....+.|+++-|.+.|.....         +..|.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            34456788888888777652      677788888888888888888888877532         344555566667777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010459          227 EIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKS  269 (510)
Q Consensus       227 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  269 (510)
                      .-.++-+.....|      -++.....+...|+++++.++|.+
T Consensus        78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666555555443      135555566677788888777744

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.27  E-value=1.6  Score=35.87  Aligned_cols=100  Identities=14%  Similarity=0.106  Sum_probs=68.0

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010459          183 GYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR  262 (510)
Q Consensus       183 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  262 (510)
                      ...+.|+++.|.++-+++      -+...|..|-+...+.|+++-|.+.|....    .     +..+.--|.-.|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D-----~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----S-----FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----C-----HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----C-----HHHHHHHHHHhCCHHH
Confidence            445678888888887765      267788888888888888888888888776    2     3455556666777766


Q ss_pred             HHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459          263 MEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK  303 (510)
Q Consensus       263 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  303 (510)
                      -.++-+.-...|      -++.....+...|+++++.+++.
T Consensus        79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence            665555544444      23444555666788888777764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.08  E-value=0.36  Score=38.75  Aligned_cols=78  Identities=14%  Similarity=0.056  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 010459          158 AVRAFQEMEGFALKPSLEIYNSIIHGYSKIG---KFNEALLFLNEMKEMNLSP--QSDTYDGLIQAYGKYKMYDEIDMCL  232 (510)
Q Consensus       158 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~  232 (510)
                      +.+-|.+..+.|. ++..+...+-.++++.+   +.++++.+|++..+.+ .|  ....+=.|--+|.+.|++++|.+.+
T Consensus        17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            3344444433332 34444444444555544   3335555555544432 12  1222223333444555555555555


Q ss_pred             HHHHh
Q 010459          233 KMMKL  237 (510)
Q Consensus       233 ~~m~~  237 (510)
                      +.+.+
T Consensus        95 ~~lL~   99 (152)
T 1pc2_A           95 RGLLQ   99 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.89  E-value=0.51  Score=34.33  Aligned_cols=17  Identities=6%  Similarity=-0.226  Sum_probs=6.3

Q ss_pred             HHccCCHHHHHHHHHHH
Q 010459          219 YGKYKMYDEIDMCLKMM  235 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m  235 (510)
                      +.+.|++++|...|+++
T Consensus        53 ~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A           53 HFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            33333333333333333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.79  E-value=0.53  Score=34.24  Aligned_cols=66  Identities=9%  Similarity=-0.069  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010459          137 INEFNSQKIIGMLCEEGL---MEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEM  203 (510)
Q Consensus       137 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  203 (510)
                      .|...+..+..++...++   .++|..+|++..+.. +-++..+..+-..+.+.|++++|+..|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344444444444433322   455666666555543 224455555555666666666666666666554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.51  E-value=2.1  Score=33.32  Aligned_cols=139  Identities=14%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM  230 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  230 (510)
                      -.|.+++..++..+..+   ..+..-||.+|--....-+-+-..++++..-.-   -|          ..+||++.....
T Consensus        19 ldG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence            35778888888877775   346666777777666666666666666655221   12          124566666555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459          231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT  310 (510)
Q Consensus       231 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  310 (510)
                      .+-.+-     .+....+..++.....|.-|+-.+++.++.. +.+|+......+..||.+.|+..++.+++.+..+.|+
T Consensus        83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            555443     3555667788888999999999999888644 4467788888899999999999999999999988885


Q ss_pred             C
Q 010459          311 P  311 (510)
Q Consensus       311 ~  311 (510)
                      +
T Consensus       157 k  157 (172)
T 1wy6_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.69  E-value=0.49  Score=35.17  Aligned_cols=66  Identities=3%  Similarity=-0.058  Sum_probs=36.8

Q ss_pred             hhhHHHHHHHHHhcCCCCcHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459          103 KDHFWAVIRFLKNSSRSRQIPQVFDMWKNIE-----KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGF  168 (510)
Q Consensus       103 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  168 (510)
                      +..+..+-..+.+.|++..|...|+...+..     .-.+...++..|..+|.+.|+++.|...+++..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3344556666666666666666666555421     01223445555666666666666666666655543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.66  E-value=2  Score=34.38  Aligned_cols=81  Identities=12%  Similarity=0.053  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHhcCChhHHHH
Q 010459          226 DEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG---LLKRMEGTYKSMLTKRMHL--RSSTMVAILDAYMNFGMLDKMEK  300 (510)
Q Consensus       226 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~  300 (510)
                      ..+.+-|.+..+.| .++..+...+--++++.+   +.++++.+|++..+.. .|  +...+-.+--+|.+.|++++|++
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            34444454444444 245555555555555555   4445666666555543 12  12233334445566666666666


Q ss_pred             HHHHHHhc
Q 010459          301 FYKRLLNS  308 (510)
Q Consensus       301 ~~~~m~~~  308 (510)
                      .++.+++.
T Consensus        93 y~~~lL~i  100 (152)
T 1pc2_A           93 YVRGLLQT  100 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.62  E-value=1.2  Score=33.03  Aligned_cols=64  Identities=11%  Similarity=-0.071  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMN------LSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~  237 (510)
                      ..-+..|...+.+.|+++.|...|+...+.-      -.+....+..|..+|.+.|+++.|...+++..+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3344445555555555555555555443310      112334455555555555555555555555543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.56  E-value=3  Score=32.49  Aligned_cols=141  Identities=6%  Similarity=-0.065  Sum_probs=85.3

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE  192 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  192 (510)
                      +.-.|..+++.++......    ..+..-||-+|.-....-+-+-..++++.+-+.   -|..          ..|++..
T Consensus        17 ~ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHH
Confidence            3446778888888887765    345566777777766666777777776666432   2221          2334444


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                      ..+.+-.+-     .+..-.+.-++.....|+-+.-.+++..+.... +|+....-.+-.+|.+.|+..+|.+++.+.-+
T Consensus        80 Vi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           80 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            444433321     134445556666667777777777777753322 56666666777777777777777777777776


Q ss_pred             CCCc
Q 010459          273 KRMH  276 (510)
Q Consensus       273 ~g~~  276 (510)
                      .|++
T Consensus       154 kG~k  157 (172)
T 1wy6_A          154 KGEK  157 (172)
T ss_dssp             TTCH
T ss_pred             hhhH
Confidence            6654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.51  E-value=1.1  Score=40.31  Aligned_cols=93  Identities=14%  Similarity=0.083  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 010459          155 MEEAVRAFQEMEGFALKPS---LEIYNSIIHGYSK-----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY-KMY  225 (510)
Q Consensus       155 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~  225 (510)
                      ...|...+++..+.  .|+   -..|..+...|.+     -|+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            46677777777765  455   4578888888888     488888888888888744322467777788888874 888


Q ss_pred             HHHHHHHHHHHhCCCC--CCHHHHHH
Q 010459          226 DEIDMCLKMMKLDGCS--PDHITYNL  249 (510)
Q Consensus       226 ~~a~~~~~~m~~~g~~--~~~~~~~~  249 (510)
                      +++.+.+++.......  |+....|.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence            8888888888876544  55444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.42  E-value=0.69  Score=41.49  Aligned_cols=93  Identities=10%  Similarity=-0.014  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChH
Q 010459          121 QIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEE-----GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKI-GKFN  191 (510)
Q Consensus       121 ~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~  191 (510)
                      .|+..+++..   .+.|+   ...|..|...|.+.     |+.++|.+.|++..+.+...+..++......++.. |+.+
T Consensus       181 ~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          181 AAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3444444443   34565   67899999999994     99999999999999874333588899999999885 9999


Q ss_pred             HHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010459          192 EALLFLNEMKEMNLS--PQSDTYDGLI  216 (510)
Q Consensus       192 ~a~~~~~~m~~~g~~--p~~~t~~~li  216 (510)
                      ++.+.+++.+.....  |+....|.+-
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan~~~  284 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLVILS  284 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence            999999999998876  7765555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.86  E-value=0.93  Score=36.01  Aligned_cols=104  Identities=12%  Similarity=0.057  Sum_probs=60.7

Q ss_pred             CChhhHHHHHHHHHhcCCC------CcHHHHHHHHHhhcCCCCCHH-HHHHHHHHH------HhcCCHHHHHHHHHHHHh
Q 010459          101 WTKDHFWAVIRFLKNSSRS------RQIPQVFDMWKNIEKSRINEF-NSQKIIGML------CEEGLMEEAVRAFQEMEG  167 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~------~~~g~~~~A~~~~~~m~~  167 (510)
                      -|+++|...+...-+.|++      ++.+++|++..  ..++|+.. .|...|..+      ...+++++|.++|+.+.+
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi--a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI--EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH--HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH--HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4677888888888888888      78888888776  45566531 122222211      123566666666666654


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010459          168 FALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSP  207 (510)
Q Consensus       168 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  207 (510)
                      . .+.=...|-.-..-=.+.|++..|.+++......+.+|
T Consensus        89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            3 12114444444444455666666666666666655543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.38  E-value=3.4  Score=32.85  Aligned_cols=103  Identities=8%  Similarity=0.079  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCccCH----HHHHHHHH---HHHhcCChhHHHHHHHHHHhc
Q 010459          242 PDHITYNLLIQEFACAGLL------KRMEGTYKSMLTKRMHLRS----STMVAILD---AYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       242 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~----~t~~~ll~---~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      -|..+|-..+.-.-+.|++      ++..++|++.... ++|+.    ..|.-+--   .+...+++++|+++|+.+++.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4566666666666666666      6666666665542 34431    01110000   011236677777777766553


Q ss_pred             CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q 010459          309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR  346 (510)
Q Consensus       309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  346 (510)
                      +-.. ..++......-.+.|++..|.+++....++.++
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            2111 333333333333444444444444333333333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.08  E-value=1.8  Score=41.11  Aligned_cols=71  Identities=13%  Similarity=0.057  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKL-----DGCSPDHITY  247 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~  247 (510)
                      ....++..+...|+.++|+..++.+.... .-+...|..+|.++.+.|+..+|.+.|+...+     .|+.|+..+-
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            44566777778888888888888776643 23777888888888888888888888887643     4888877664

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=88.78  E-value=0.016  Score=55.55  Aligned_cols=147  Identities=9%  Similarity=-0.024  Sum_probs=94.7

Q ss_pred             chHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 010459          347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYD  426 (510)
Q Consensus       347 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~  426 (510)
                      .+.+|..+..++...+...+|.+-|-+..      |...|..+|.+..+.|.+++-..++...++..-.|...|  .|+.
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDt--eLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTH--HHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHH--HHHH
Confidence            36667777777777777766655443211      455667778888888888888877776665544444443  6777


Q ss_pred             hhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCC--------------------CCCC
Q 010459          427 ARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPY--------------------SREK  486 (510)
Q Consensus       427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~p  486 (510)
                      +|++.++..+-.+++.       .|+......+.+-|...|.++.|.-+|..+...                    ...-
T Consensus       125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn  197 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN  197 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred             HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7777777666444432       134444555666666666666665555443321                    1234


Q ss_pred             CcccHHHHHHHHHhcCCCCCCC
Q 010459          487 KRWTYQNLIDLVIKHNGKNLDG  508 (510)
Q Consensus       487 ~~~~~~~li~~~~~~g~~~~a~  508 (510)
                      +..||..+-.+|...+.+.+|.
T Consensus       198 s~ktWKeV~~ACvd~~EfrLAq  219 (624)
T 3lvg_A          198 STRTWKEVCFACVDGKEFRLAQ  219 (624)
T ss_dssp             SSCSHHHHTHHHHHSCTTTTTT
T ss_pred             ChhHHHHHHHHHhCchHHHHHH
Confidence            5679999999999999998885

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.56  E-value=1.8  Score=41.16  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=37.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCccCHH
Q 010459          213 DGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT-----KRMHLRSS  280 (510)
Q Consensus       213 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~  280 (510)
                      ..++..+...|+.++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+     .|+.|+..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            344555556666666666655555432 34555666666666666666666666655432     35555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.89  E-value=20  Score=34.55  Aligned_cols=228  Identities=9%  Similarity=0.054  Sum_probs=130.6

Q ss_pred             CCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHH--HHHHHHHHhcCCHHH--HHHHHHHHHh--CC-CCC
Q 010459          100 DWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNS--QKIIGMLCEEGLMEE--AVRAFQEMEG--FA-LKP  172 (510)
Q Consensus       100 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~--A~~~~~~m~~--~g-~~~  172 (510)
                      ..+......++..|...|+++...+.+..+.+.+|..+...+.  +.++.........+.  -..+.+....  .| +-.
T Consensus        53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kifl  132 (445)
T 4b4t_P           53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFV  132 (445)
T ss_dssp             TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCC
T ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHH
Confidence            4455677889999999999999988888777645544433332  223333333333322  2222221111  01 111


Q ss_pred             ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCC
Q 010459          173 ---SLEIYNSIIHGYSKIGKFNEALLFLNEMKEM--NLSPQ---SDTYDGLIQAYGKYKMYDEIDMCLKMMKL----DGC  240 (510)
Q Consensus       173 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~g~  240 (510)
                         .......|...|-..|++.+|.+++.++...  |..+.   ...+..-++.|...+++..|..++.++..    ...
T Consensus       133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~  212 (445)
T 4b4t_P          133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK  212 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence               1223456778889999999999999998543  22211   34667788889999999999999888642    221


Q ss_pred             CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCccCHHHHHH----HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 010459          241 SPD--HITYNLLIQEFACAGLLKRMEGTYKSMLTK-RMHLRSSTMVA----ILDAYMNFGMLDKMEKFYKRLLNSRTPLK  313 (510)
Q Consensus       241 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~----ll~~~~~~g~~~~a~~~~~~m~~~~~~~~  313 (510)
                      .|+  ..-+..++..+...+++.+|.+.|.+.... .+.-|...+..    ++-...-.+....-..+.....+....++
T Consensus       213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~  292 (445)
T 4b4t_P          213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKK  292 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccc
Confidence            222  234566777888889999998888777532 11113222222    11122222222222233333333333456


Q ss_pred             HHHHHHHHHHHHhh
Q 010459          314 EDLVRKLAEVYIKN  327 (510)
Q Consensus       314 ~~~~~~li~~~~~~  327 (510)
                      ...+..|+.+|...
T Consensus       293 l~~~~~L~k~f~~~  306 (445)
T 4b4t_P          293 LESQESLVKLFTTN  306 (445)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHhc
Confidence            67777788887654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=87.76  E-value=2.4  Score=32.68  Aligned_cols=21  Identities=10%  Similarity=0.044  Sum_probs=9.6

Q ss_pred             HHHHccCCHHHHHHHHHHHHh
Q 010459          217 QAYGKYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       217 ~~~~~~g~~~~a~~~~~~m~~  237 (510)
                      -++.|.|++++|.+.++.+.+
T Consensus        82 vg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           82 VGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHH
Confidence            344444444444444444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.81  E-value=6.3  Score=40.77  Aligned_cols=125  Identities=11%  Similarity=0.030  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCC-hHHHHHHHHHHHHC------CCCC-CHH-
Q 010459          143 QKIIGMLCEEGL-MEEAVRAFQEMEGFALKPSLEI--YNSIIHGYSKIGK-FNEALLFLNEMKEM------NLSP-QSD-  210 (510)
Q Consensus       143 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~-  210 (510)
                      ..++..+...|+ .+.|..+|+++.+.  .|...+  ...+|..+.+.++ --+|.+++.+..+.      ...+ +.. 
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            444555555555 57788888888765  333322  2233333333322 22344444443221      1111 111 


Q ss_pred             ---------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010459          211 ---------TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSM  270 (510)
Q Consensus       211 ---------t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  270 (510)
                               ..+.=.+.+...|+++.|+++-++..... +-+-.+|-.|...|...|+++.|+-.++.+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                     11111233556788888988888887653 345778999999999999999998888776

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.19  E-value=25  Score=33.88  Aligned_cols=163  Identities=5%  Similarity=0.024  Sum_probs=75.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC--CCccC---HHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCC--HHH
Q 010459          248 NLLIQEFACAGLLKRMEGTYKSMLTK--RMHLR---SSTMVAILDAYMNFGMLDKMEKFYKRLLN----SRTPLK--EDL  316 (510)
Q Consensus       248 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~  316 (510)
                      ..|...|-..|++.+|.+++.++...  |..+.   ...+...++.|...+++.+|..+...+..    ....|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            34555566666666666666665421  21111   23455556666666666666666665431    111111  123


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHhhc--CCchHHHHHHH----HHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHH
Q 010459          317 VRKLAEVYIKNYMFSRLDDLGDDLASRI--GRTELVWCLRL----LSHACLLSHRGIDSVVREMESAKVRWNVTTANIIL  390 (510)
Q Consensus       317 ~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  390 (510)
                      +...+..+...+++.+|.+.+.......  ..+...|...+    ....-.+....--.+.........-++...|..++
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~  300 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV  300 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence            3444555555566655555544443211  11122221111    11111111111222233333222234677788888


Q ss_pred             HHHHcC--CChhHHHHHHHhhh
Q 010459          391 LAYLKM--KDFKHLRVLLSELP  410 (510)
Q Consensus       391 ~~~~~~--g~~~~A~~~~~~m~  410 (510)
                      .+|...  .+++...+.|....
T Consensus       301 k~f~~~~L~~~~~~~~~~~~~L  322 (445)
T 4b4t_P          301 KLFTTNELMRWPIVQKTYEPVL  322 (445)
T ss_dssp             HHHHHCCSSSHHHHHHHTCSST
T ss_pred             HHHHhchHhhhHHHHHHHHHHh
Confidence            888764  45677777666554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=84.08  E-value=47  Score=35.25  Aligned_cols=293  Identities=10%  Similarity=-0.038  Sum_probs=122.2

Q ss_pred             HHHHHHHhcCCCCcH-HHHH-HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHH
Q 010459          108 AVIRFLKNSSRSRQI-PQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLE--IYNSIIHG  183 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a-~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~  183 (510)
                      ++.+++..+|--.+. .... +++-+   ..+....-.+.--+....|+.++++.+++.....+-..+..  .-..+--|
T Consensus       344 ~f~Naf~naG~~~D~~l~~~~~Wl~k---~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG  420 (963)
T 4ady_A          344 SVANGFMHAGTTDNSFIKANLPWLGK---AQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG  420 (963)
T ss_dssp             HHHHHHHTTTTCCCHHHHHCHHHHHH---CCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcchhhhcchhhhhc---cchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence            566677777755443 2222 22222   12222222223334555666666766666655321011222  22223334


Q ss_pred             HHhcCChHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCC-HHH-HHHHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNL-------SPQSDTYDGLIQAYGKYKM-YDEIDMCLKMMKLDGCSPD-HIT-YNLLIQE  253 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~-------~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~-~~~-~~~li~~  253 (510)
                      .+..|..+++++++.......-       .+....-.+|--+.+-.|. -+++...+..+...   .+ ... ..++--|
T Consensus       421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALG  497 (963)
T 4ady_A          421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN---DSATSGEAAALGMG  497 (963)
T ss_dssp             HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHh
Confidence            4455555556665555443210       0111111222222222222 12344444444332   12 111 1112122


Q ss_pred             --HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhh
Q 010459          254 --FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAY--MNFGMLDKMEKFYKRLLNSRTPLKEDLVR--KLAEVYIKN  327 (510)
Q Consensus       254 --~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~  327 (510)
                        |+..|+.+....++..+.+..   +......+.-++  ...|+.+.+..+.+.+.... .|...--.  ++.-+|+..
T Consensus       498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT  573 (963)
T 4ady_A          498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT  573 (963)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred             hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence              334455555555655554431   222222233333  35566666666666655431 22222222  222344455


Q ss_pred             cchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh-hHHHHHH
Q 010459          328 YMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDF-KHLRVLL  406 (510)
Q Consensus       328 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~  406 (510)
                      |+.....+++..+......+......+..+....|+.+.+.++++.+.+.+ .|.+.--.++.-+....|.. .++..++
T Consensus       574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L  652 (963)
T 4ady_A          574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL  652 (963)
T ss_dssp             CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            555555555554443333333322233334444555555666665555433 33333333333344444443 3556666


Q ss_pred             Hhhhh
Q 010459          407 SELPT  411 (510)
Q Consensus       407 ~~m~~  411 (510)
                      ..+..
T Consensus       653 ~~L~~  657 (963)
T 4ady_A          653 DPLTK  657 (963)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            66653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.92  E-value=31  Score=37.94  Aligned_cols=149  Identities=11%  Similarity=-0.009  Sum_probs=95.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-----------------
Q 010459          179 SIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCS-----------------  241 (510)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------------  241 (510)
                      .++..+.+.+..+.+.++.....     -+...-=.+..+|..+|++++|...|.+... |+.                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence            46666777777777766554432     2333333455667778888888888866421 110                 


Q ss_pred             ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-Cc-cC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 010459          242 ------PDHITYNLLIQEFACAGLLKRMEGTYKSMLTKR-MH-LR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTP  311 (510)
Q Consensus       242 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~-p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  311 (510)
                            .-..=|..++..+-+.|.++.+.++-....+.. .. ++  ...|..+.+++...|++++|...+-.+..... 
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-  969 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-  969 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence                  011236677788888888888887766555422 11 11  12578889999999999999988887765543 


Q ss_pred             CCHHHHHHHHHHHHhhcchhHHHH
Q 010459          312 LKEDLVRKLAEVYIKNYMFSRLDD  335 (510)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~  335 (510)
                       -......||...+..+.++....
T Consensus       970 -r~~cLr~LV~~lce~~~~~~L~~  992 (1139)
T 4fhn_B          970 -KKSCLLDFVNQLTKQGKINQLLN  992 (1139)
T ss_dssp             -CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCChhhhhC
Confidence             35667778888887777655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=82.30  E-value=12  Score=28.69  Aligned_cols=83  Identities=12%  Similarity=0.011  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCcc--CHHHHHHHHHHHHhcCChhHH
Q 010459          224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKR---MEGTYKSMLTKRMHL--RSSTMVAILDAYMNFGMLDKM  298 (510)
Q Consensus       224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a  298 (510)
                      .+..+.+-|.+....| .++..+--.+.-++++.....+   ++.++++....+ .|  .....-.+.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3344444444443333 2444444445555555554444   555555555442 11  112222334455555666666


Q ss_pred             HHHHHHHHhc
Q 010459          299 EKFYKRLLNS  308 (510)
Q Consensus       299 ~~~~~~m~~~  308 (510)
                      ++.++.+++.
T Consensus        94 ~~~~~~lL~~  103 (126)
T 1nzn_A           94 LKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6555555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.90  E-value=7.7  Score=28.32  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010459          193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      ..+-++.+...++.|++....+.+++|-|.+++..|.++|+.++
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33334444444444555555555555555555555555555444

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.59  E-value=13  Score=27.12  Aligned_cols=48  Identities=6%  Similarity=0.012  Sum_probs=30.7

Q ss_pred             CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       259 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      +.-+..+-++.+....+-|++....+.++||.+.+++..|.++++-++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344455555555556666677777777777777777777777776655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.05  E-value=17  Score=37.66  Aligned_cols=46  Identities=7%  Similarity=-0.071  Sum_probs=36.6

Q ss_pred             hhHHHHHhhccCchhHHHHHHhhcCCCCCCCCcccHHHHHHHHHhcCC
Q 010459          456 DPLVLAVYGKGHFLRYCEEVYSSLEPYSREKKRWTYQNLIDLVIKHNG  503 (510)
Q Consensus       456 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  503 (510)
                      |..+....-|.+.+++|.+.|+......  -+...+.-|+.-|.+.+.
T Consensus       616 WEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~~~~  661 (754)
T 4gns_B          616 WELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQPPK  661 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCc
Confidence            6666666778899999999999888754  455588899999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.04
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.02
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.93
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.92
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.8
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.23
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.16
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.07
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.01
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.98
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.96
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.83
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.78
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.76
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.74
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.68
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.52
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.42
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.13
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.11
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.03
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.02
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.02
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.01
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.91
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.02
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.93
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.04
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.5
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	89.31
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	87.3
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	81.41
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	81.2

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.2e-19  Score=168.57  Aligned_cols=383  Identities=9%  Similarity=-0.071  Sum_probs=310.8

Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010459          109 VIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG  188 (510)
Q Consensus       109 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  188 (510)
                      +...+.+.|++++|.+.++.+.+.  .+-+...+..+...|.+.|++++|...|++..+.. +-+..+|..+...|.+.|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence            345677889999999999998752  34467888999999999999999999999998764 336789999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010459          189 KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYK  268 (510)
Q Consensus       189 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  268 (510)
                      ++++|++.+....+.... +..............+....+........... .................+....+...+.
T Consensus        82 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence            999999999999876543 45555555656666666666666666555443 3455566666777788888999998888


Q ss_pred             HHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCch
Q 010459          269 SMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTE  348 (510)
Q Consensus       269 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  348 (510)
                      ....... -+...+..+...+...|+.++|...+....+.. +-+...+..+...|...|++++|...+.......+...
T Consensus       160 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  237 (388)
T d1w3ba_         160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH
Confidence            8776532 256778888889999999999999999988754 34567888899999999999999999999998888999


Q ss_pred             HHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHHHHHHHHhh
Q 010459          349 LVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVTIGILYDAR  428 (510)
Q Consensus       349 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~  428 (510)
                      ..+..+...+...|+.++|.+.|++..+..+. +..+|..+...+.+.|++++|.+.++..... ...+...+..+...+
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHH
Confidence            99999999999999999999999999887654 6788999999999999999999999988764 234667777888889


Q ss_pred             hhcCccchHHHHHHHcCCccccccccChhHHHHHhhccCchhHHHHHHhhcCCCCCCCC-cccHHHHHHHHHhcCC
Q 010459          429 RIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGHFLRYCEEVYSSLEPYSREKK-RWTYQNLIDLVIKHNG  503 (510)
Q Consensus       429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~  503 (510)
                      ...|++++|++.+++..... |.+...+..+...|.+.|++++|.+.|++..+  +.|+ ...|..+...|.+.|+
T Consensus       316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999975442 22344566677889999999999999999887  5665 4578888888888775

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.1e-17  Score=154.01  Aligned_cols=381  Identities=10%  Similarity=-0.013  Sum_probs=302.1

Q ss_pred             HHhhhhhHHHHHHHHHcccCCCchhhhhccCCCChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 010459           69 ESYHEHQALNALIQRLNKKVSCPLQILQHDGDWTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGM  148 (510)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  148 (510)
                      ..+.+.|.+.++++.+.       ..++..+ -++..+..+...|.+.|++++|.+.|+...+.  .+-+..+|..+...
T Consensus         7 ~~~~~~G~~~~A~~~~~-------~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~   76 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCM-------QLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHTCHHHHHHHHH-------HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH-------HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            44567788889988887       5554432 25678888889999999999999999998752  24467889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  228 (510)
                      |.+.|++++|+..+....+.. ..+...+..........+....+............. ...............+....+
T Consensus        77 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  154 (388)
T d1w3ba_          77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA  154 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhh
Confidence            999999999999999998765 335566666666666777777777766666555433 445556666677788888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          229 DMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       229 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ...+....... +.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+....+.
T Consensus       155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  232 (388)
T d1w3ba_         155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence            88888877654 346778888889999999999999999998875422 5678888999999999999999999998876


Q ss_pred             CCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHH
Q 010459          309 RTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANI  388 (510)
Q Consensus       309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  388 (510)
                      . +.+...+..+...|.+.|++++|...++......+.+..+|..+...+...|+.++|.+.++........ +...+..
T Consensus       233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  310 (388)
T d1w3ba_         233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNN  310 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhH
Confidence            5 4566778888999999999999999999998888899999999999999999999999999988876543 7788888


Q ss_pred             HHHHHHcCCChhHHHHHHHhhhhCCCCCC-HHHHHHHHHhhhhcCccchHHHHHHHcCCccccccccChhHHHHHhhccC
Q 010459          389 ILLAYLKMKDFKHLRVLLSELPTRHVKPD-IVTIGILYDARRIGFDGTGALEMWKRIGFLFKTVEINTDPLVLAVYGKGH  467 (510)
Q Consensus       389 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  467 (510)
                      +...+.+.|++++|+..|++..+.  .|+ ...+..+-..+...|++++|++.+++.....+ .+...+..+...|.+.|
T Consensus       311 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         311 LANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence            999999999999999999998863  565 45677777889999999999999998744321 22334555555665554


Q ss_pred             c
Q 010459          468 F  468 (510)
Q Consensus       468 ~  468 (510)
                      |
T Consensus       388 D  388 (388)
T d1w3ba_         388 D  388 (388)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-11  Score=113.03  Aligned_cols=240  Identities=10%  Similarity=-0.040  Sum_probs=104.6

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN  191 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  191 (510)
                      .+.+.|++++|.+.|+...+  ..+-+...|..+..+|...|++++|...|++..+.. +-+...|..+...|...|+++
T Consensus        28 ~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence            34455555555555555542  222234455555555555555555555555554432 123445555555555555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010459          192 EALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       192 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  271 (510)
                      +|.+.+++.....  |+............                   ...+.......+..+...+..++|.+.|.+..
T Consensus       105 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_         105 QACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             HHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence            5555555554421  11100000000000                   00000001111122233344455555555444


Q ss_pred             HCC-CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHH
Q 010459          272 TKR-MHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELV  350 (510)
Q Consensus       272 ~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  350 (510)
                      ... -.++...+..+...+...|++++|...++...+.. +-+...+..+...|.+.|++++|.+.+.......+.+..+
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  242 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS  242 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence            321 12234444555555555555555555555554432 2234444445555555555555555544444444444445


Q ss_pred             HHHHHHHhhhhcccccHHHHHHHHHH
Q 010459          351 WCLRLLSHACLLSHRGIDSVVREMES  376 (510)
Q Consensus       351 ~~~li~~~~~~~~~~~a~~~~~~m~~  376 (510)
                      |..+...|...|+.++|++.|++..+
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555555555555555555554443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-11  Score=114.15  Aligned_cols=243  Identities=11%  Similarity=0.003  Sum_probs=166.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKM  224 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  224 (510)
                      .-..+.+.|++++|+..|++..+.. +.+..+|..+...|...|++++|...|++..+.... +...|..+...|.+.|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            3445667788888888888777664 225667777777777778888888777777664322 45666777777777777


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010459          225 YDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKR  304 (510)
Q Consensus       225 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  304 (510)
                      +++|.+.+++.....  |+..............                   .+.......+..+...+...++.+.+..
T Consensus       103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            777777777766542  2211110000000000                   0001111122233444566778888887


Q ss_pred             HHhcC-CCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCH
Q 010459          305 LLNSR-TPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV  383 (510)
Q Consensus       305 m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  383 (510)
                      ..+.. -.++..++..+...+...|++++|...+.......+.+...|..+...+...|+.++|.+.|++..+..+. +.
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~  240 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YI  240 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cH
Confidence            76533 34567778888888999999999999998888888888889999999999999999999999988876443 57


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          384 TTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                      .+|..+..+|.+.|++++|+..|++.++
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7888888899999999999999988765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.8e-08  Score=90.02  Aligned_cols=61  Identities=5%  Similarity=-0.140  Sum_probs=29.7

Q ss_pred             HHHHHHHHhhhhcccccHHHHHHHHHHCC-CCcC--HHHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          350 VWCLRLLSHACLLSHRGIDSVVREMESAK-VRWN--VTTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       350 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      .|...+......|+.+.|..+|++..+.. ..|+  ...|...+.--.+.|+.+.+.++++++.
T Consensus       205 ~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333333334444444444555544432 2222  3455555555555566666666666654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=4.3e-08  Score=89.68  Aligned_cols=187  Identities=9%  Similarity=-0.043  Sum_probs=118.0

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010459          224 MYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYK  303 (510)
Q Consensus       224 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  303 (510)
                      ..++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+.+.+.........|...+..+.+.|+.+.|+++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            34566777777665444455666777777777777777777777777654333234456677777777777777777777


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCH
Q 010459          304 RLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNV  383 (510)
Q Consensus       304 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  383 (510)
                      ...+.+. .+...+......                                 -+...|+.+.|..+|+.+.+..+. +.
T Consensus       159 ~al~~~~-~~~~~~~~~a~~---------------------------------e~~~~~~~~~a~~i~e~~l~~~p~-~~  203 (308)
T d2onda1         159 KAREDAR-TRHHVYVTAALM---------------------------------EYYCSKDKSVAFKIFELGLKKYGD-IP  203 (308)
T ss_dssp             HHHTSTT-CCTHHHHHHHHH---------------------------------HHHTSCCHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHHhCC-CcHHHHHHHHHH---------------------------------HHHhccCHHHHHHHHHHHHHhhhh-hH
Confidence            7665442 122222111111                                 112234445566667776665322 57


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHhhhhC-CCCCC--HHHHHHHHHhhhhcCccchHHHHHHHcC
Q 010459          384 TTANIILLAYLKMKDFKHLRVLLSELPTR-HVKPD--IVTIGILYDARRIGFDGTGALEMWKRIG  445 (510)
Q Consensus       384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~~~  445 (510)
                      ..|...+..+.+.|+.+.|..+|++..+. +..|+  ...|...+.--...|+.+.+.++.+++.
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77888888888888888888888887753 34554  2457777776667788888888887763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.7e-08  Score=89.04  Aligned_cols=149  Identities=6%  Similarity=-0.055  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010459          140 FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG-KFNEALLFLNEMKEMNLSPQSDTYDGLIQA  218 (510)
Q Consensus       140 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  218 (510)
                      ..++.+-..+.+.+..++|++++++..+... -+...|+....++...| ++++|++.++...+.... +..+|+.+...
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            3455555566666777777777777766532 24556666666666654 367777777766654433 56666666666


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhc
Q 010459          219 YGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNF  292 (510)
Q Consensus       219 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  292 (510)
                      +.+.|++++|...++++.+.. +.+...|..+...+.+.|++++|++.|++..+.+.. +...|+.+...+.+.
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT  193 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHc
Confidence            667777777777777666553 345666666666677777777777777766665332 444555444444333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.5e-07  Score=86.19  Aligned_cols=203  Identities=9%  Similarity=-0.014  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          175 EIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK-MYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       175 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      ..|+.+-..+.+.+..++|++++++..+.... +...|+.....+.+.| ++++|...++...+.. +.+..+|..+-..
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            45556666666777777777777777764322 4456666666666655 4677777777766554 3456677777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHH
Q 010459          254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL  333 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  333 (510)
                      +.+.|++++|++.++.+.+.... +...|..+...+...|++++|.+.++.+++.. +.+...|+.+...+.+.+...  
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~--  197 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN--  197 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC--
T ss_pred             HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc--
Confidence            77777777777777777665322 56667777777777777777777777776654 234444444444443333221  


Q ss_pred             HHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhh
Q 010459          334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPT  411 (510)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  411 (510)
                                                ..+..++|++.+....+..+. |...|+.+...+.+ ...+++.+.++...+
T Consensus       198 --------------------------~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         198 --------------------------DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             --------------------------SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             --------------------------hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence                                      112234566666666655443 56666665554443 335666666666654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=4.2e-07  Score=83.99  Aligned_cols=27  Identities=7%  Similarity=0.012  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHhhh
Q 010459          384 TTANIILLAYLKMKDFKHLRVLLSELP  410 (510)
Q Consensus       384 ~~~~~li~~~~~~g~~~~A~~~~~~m~  410 (510)
                      .++..+-..|.+.|++++|.+.+++..
T Consensus       292 ~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         292 RNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345555566666777777776666553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=4.1e-07  Score=84.05  Aligned_cols=267  Identities=11%  Similarity=-0.028  Sum_probs=191.6

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 010459          110 IRFLKNSSRSRQIPQVFDMWKNIEKSRIN---EFNSQKIIGMLCEEGLMEEAVRAFQEMEGFAL-KPS----LEIYNSII  181 (510)
Q Consensus       110 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li  181 (510)
                      ...+...|++++|.++++.......-.++   ...++.+...|...|++++|+..|++..+... .++    ..++..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            45577899999999999988752211111   24677788899999999999999998764311 112    34566777


Q ss_pred             HHHHhcCChHHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 010459          182 HGYSKIGKFNEALLFLNEMKE----MNLS--PQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD----GCSPDHITYNLL  250 (510)
Q Consensus       182 ~~~~~~g~~~~a~~~~~~m~~----~g~~--p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~l  250 (510)
                      ..+...|++..+...+.+...    .+..  +. ...+..+...+...|+++.+...+......    +.......+..+
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            888999999999999887653    2221  11 235566778889999999999999887653    222334556667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHC----CCccC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CHHHHHHHH
Q 010459          251 IQEFACAGLLKRMEGTYKSMLTK----RMHLR--SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPL---KEDLVRKLA  321 (510)
Q Consensus       251 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li  321 (510)
                      ...+...++...+...+.+....    +..+.  ...+......+...|+.++|.+.+....+.....   ....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            77888899999999988776532    21111  2345666777888999999999998876543222   234556688


Q ss_pred             HHHHhhcchhHHHHHHHHHHhh------cCCchHHHHHHHHHhhhhcccccHHHHHHHHHH
Q 010459          322 EVYIKNYMFSRLDDLGDDLASR------IGRTELVWCLRLLSHACLLSHRGIDSVVREMES  376 (510)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  376 (510)
                      ..|...|++++|...+......      .+.....+..+...|...|+.++|.+.+++..+
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8999999999999998776522      223355677788899999999999999987654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.5e-07  Score=83.29  Aligned_cols=96  Identities=7%  Similarity=-0.091  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  255 (510)
                      +|..+...|.+.|++++|++.|++.++.... +..+|+.+..+|.+.|++++|...|++..+.. +-+..+|..+...|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            4555555666666666666666666554322 45566666666666666666666666665543 224455556666666


Q ss_pred             HcCCHHHHHHHHHHHHHC
Q 010459          256 CAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~~  273 (510)
                      ..|++++|.+.|+...+.
T Consensus       117 ~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh
Confidence            666666666666666554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=4.7e-08  Score=90.52  Aligned_cols=219  Identities=11%  Similarity=-0.068  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHH
Q 010459          190 FNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYK--MYDEIDMCLKMMKLDGCSPDHITYNLLI-QEFACAGLLKRMEGT  266 (510)
Q Consensus       190 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~  266 (510)
                      +++|+.+++...+...+ +...|..+...+...+  ++++|...+++..+.. +++...|...+ ..+...+.+++|+..
T Consensus        89 ~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence            44555555555443221 3444444444444433  2455555555554432 22344433322 344445555555555


Q ss_pred             HHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q 010459          267 YKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDLASRIGR  346 (510)
Q Consensus       267 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  346 (510)
                      ++...+.... +...|..+...+...|++++|...+....+..  |   ....+...+...+..+++...+.......+.
T Consensus       167 ~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~  240 (334)
T d1dcea1         167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (334)
T ss_dssp             HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHHHHhCcc
Confidence            5555544322 44455555555555555544433322211110  0   0011112222333333444333333333344


Q ss_pred             chHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHH
Q 010459          347 TELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIV  419 (510)
Q Consensus       347 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  419 (510)
                      ....+..+...+...++.++|.+.+.+..+..+. +..+|..+...|.+.|+.++|.+.|+...+  +.|+..
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~  310 (334)
T d1dcea1         241 PLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRA  310 (334)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGH
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccH
Confidence            4444444445555556666666666665554332 445666666677777777777777777765  346443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=7.2e-08  Score=89.22  Aligned_cols=274  Identities=9%  Similarity=-0.069  Sum_probs=196.4

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCH-HHHHHHHHH----------HHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010459          108 AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINE-FNSQKIIGM----------LCEEGLMEEAVRAFQEMEGFALKPSLEI  176 (510)
Q Consensus       108 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~~~~~~  176 (510)
                      .++.........++|+++++...+.   .|+. ..|+..-..          +...|++++|+..|+...+.. +.+...
T Consensus        34 ~~~~~~~~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~  109 (334)
T d1dcea1          34 AVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT  109 (334)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence            3333333344457999999988752   3443 445432222          233456889999999988764 447888


Q ss_pred             HHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          177 YNSIIHGYSKIGK--FNEALLFLNEMKEMNLSPQSDTYD-GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       177 ~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      |..+..++...++  +++|+..+.++.+.... +...+. .....+...+..++|...++...+.. +-+...|+.+-..
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~  187 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            9888888877664  78999999999886432 555554 44467778899999999999998876 4578899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHH
Q 010459          254 FACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRL  333 (510)
Q Consensus       254 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  333 (510)
                      +.+.|++++|...+......  .|+   .......+...+..+++...+....... +++...+..+...+...++..++
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHH
Confidence            99999998887666544332  111   1223344566677788888888777654 34444556667777788899999


Q ss_pred             HHHHHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010459          334 DDLGDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYL  394 (510)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  394 (510)
                      ...+.......+.+...|..+...+...|+.++|.+.|++..+..+. +...|..|...+.
T Consensus       262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~  321 (334)
T d1dcea1         262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence            99888888888888899999999999999999999999999886432 4556666654443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=3e-07  Score=81.33  Aligned_cols=129  Identities=12%  Similarity=-0.072  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG  220 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  220 (510)
                      +|..+-..|.+.|++++|+..|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+.... +..++..+...|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            34444555566666666666666665543 224556666666666666666666666666554322 3445555666666


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          221 KYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                      ..|++++|...|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus       117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            6666666666666655443 22333333333344444444444444444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.7e-06  Score=68.38  Aligned_cols=124  Identities=15%  Similarity=0.042  Sum_probs=81.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE  227 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  227 (510)
                      .+...|+++.|++.|+++.    +|+..+|..+-..|...|++++|++.|++.++.+.. +...|..+-.+|.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence            4456677777777777653    566777777777777777777777777777765432 56677777777777777777


Q ss_pred             HHHHHHHHHhCC------------CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 010459          228 IDMCLKMMKLDG------------CS--P-DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMH  276 (510)
Q Consensus       228 a~~~~~~m~~~g------------~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  276 (510)
                      |...|++.....            ..  + ...++..+-.++.+.|++++|.+.|.........
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            777777765321            00  0 0234445556677777777777777776655443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.2e-05  Score=63.67  Aligned_cols=133  Identities=12%  Similarity=0.012  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA  255 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  255 (510)
                      .|+- ...+...|+++.|++.|+++    ..|+..+|..+-..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence            3443 44567899999999999865    45788899999999999999999999999998876 457889999999999


Q ss_pred             HcCCHHHHHHHHHHHHHCC--------------CccC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 010459          256 CAGLLKRMEGTYKSMLTKR--------------MHLR-SSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKE  314 (510)
Q Consensus       256 ~~g~~~~A~~~~~~m~~~g--------------~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~  314 (510)
                      +.|++++|++.|++.....              ..++ ..++..+-.++...|++++|.+.+....+....++.
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence            9999999999999876421              1111 245666777889999999999999988876555433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=1.8e-05  Score=70.88  Aligned_cols=169  Identities=6%  Similarity=-0.125  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHHHHhhc---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HH
Q 010459          105 HFWAVIRFLKNSSRSRQIPQVFDMWKNIE---KSRI-NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALK-PS----LE  175 (510)
Q Consensus       105 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~  175 (510)
                      .|.-....|...|++++|.+.|.......   +.++ -..+|+.+..+|.+.|++++|.+.+++..+.-.. .+    ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            45566677778888888888887665421   1111 1246777777787888888887777765432100 11    33


Q ss_pred             HHHHHHHHHH-hcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-----
Q 010459          176 IYNSIIHGYS-KIGKFNEALLFLNEMKE----MNLSP-QSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDH-----  244 (510)
Q Consensus       176 ~~~~li~~~~-~~g~~~~a~~~~~~m~~----~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----  244 (510)
                      ++..+...|- ..|++++|++.|++..+    .+-.+ -..++..+...|.+.|++++|...|++..........     
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            4555555553 35777777777766543    11111 1234566677777777777777777776554211110     


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          245 -ITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       245 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                       ..+...+..+...|+++.|...+++..+.
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence             11233444556667777777777766544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=4.9e-05  Score=67.99  Aligned_cols=90  Identities=11%  Similarity=-0.005  Sum_probs=42.4

Q ss_pred             HHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCc-cCHHHHHHHH
Q 010459          217 QAYGKYKMYDEIDMCLKMMKLD----GCSP-DHITYNLLIQEFACAGLLKRMEGTYKSMLT----KRMH-LRSSTMVAIL  286 (510)
Q Consensus       217 ~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~t~~~ll  286 (510)
                      ..|...|++++|...|.+..+.    +-++ -..+|..+...|.+.|++++|.+.+++..+    .|.. ....++..+.
T Consensus        45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  124 (290)
T d1qqea_          45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (290)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence            3455555555555555554321    1011 123455555566666666666666554432    1110 1123344444


Q ss_pred             HHHHh-cCChhHHHHHHHHHH
Q 010459          287 DAYMN-FGMLDKMEKFYKRLL  306 (510)
Q Consensus       287 ~~~~~-~g~~~~a~~~~~~m~  306 (510)
                      ..|.. .|++++|.+.+.+..
T Consensus       125 ~~~~~~~~~~~~A~~~~~~A~  145 (290)
T d1qqea_         125 EILENDLHDYAKAIDCYELAG  145 (290)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHH
T ss_pred             HhHhhHHHHHHHHHHHHHHHH
Confidence            44432 466666666665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.9e-05  Score=57.49  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=46.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010459          148 MLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDE  227 (510)
Q Consensus       148 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  227 (510)
                      .+.+.|++++|+..|++..+.. +.+...|..+-.+|.+.|++++|++.+....+.+.. +...|..+..++...|++++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHH
Confidence            3445555555555555555443 224445555555555555555555555555544322 44555555555555555555


Q ss_pred             HHHHHHHHHhC
Q 010459          228 IDMCLKMMKLD  238 (510)
Q Consensus       228 a~~~~~~m~~~  238 (510)
                      |...|++..+.
T Consensus        90 A~~~~~~a~~~  100 (117)
T d1elwa_          90 AKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            55555555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=8.8e-05  Score=59.52  Aligned_cols=91  Identities=9%  Similarity=-0.017  Sum_probs=59.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010459          146 IGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMY  225 (510)
Q Consensus       146 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  225 (510)
                      -..|.+.|++++|+..|++..+.. +.+...|..+...|.+.|++++|.+.|+..++.... +..+|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence            345566777777777777766654 235666666667777777777777777776664322 445666666777777777


Q ss_pred             HHHHHHHHHHHhC
Q 010459          226 DEIDMCLKMMKLD  238 (510)
Q Consensus       226 ~~a~~~~~~m~~~  238 (510)
                      ++|...|++..+.
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            7777777766654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.8e-05  Score=56.64  Aligned_cols=91  Identities=14%  Similarity=0.055  Sum_probs=57.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      ...+.+.|++++|+..|++..+.... +...|..+-.+|.+.|++++|...++...+.. +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            34455666677777777666654322 55566666666666666666666666666554 34566666666666666666


Q ss_pred             HHHHHHHHHHHHC
Q 010459          261 KRMEGTYKSMLTK  273 (510)
Q Consensus       261 ~~A~~~~~~m~~~  273 (510)
                      ++|+..|+...+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666644

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=5.4e-05  Score=63.28  Aligned_cols=98  Identities=11%  Similarity=-0.105  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010459          172 PSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI  251 (510)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  251 (510)
                      |+...+-.....|.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...|++..+.. +-+..+|..+-
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            3344444444445555555555555554444321 144444445555555555555555555544332 12344455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 010459          252 QEFACAGLLKRMEGTYKSML  271 (510)
Q Consensus       252 ~~~~~~g~~~~A~~~~~~m~  271 (510)
                      .+|.+.|++++|+..|++..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=0.00015  Score=58.00  Aligned_cols=93  Identities=15%  Similarity=0.097  Sum_probs=66.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010459          180 IIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGL  259 (510)
Q Consensus       180 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  259 (510)
                      ....|.+.|++++|+..|++..+.... +...|..+...|.+.|++++|...|++..+.. +-+..+|..+..+|...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence            344566777888888888777775432 66677777777777777888777777776654 3456677777777777777


Q ss_pred             HHHHHHHHHHHHHCC
Q 010459          260 LKRMEGTYKSMLTKR  274 (510)
Q Consensus       260 ~~~A~~~~~~m~~~g  274 (510)
                      +++|.+.|++.....
T Consensus        94 ~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          94 FRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            777777777777653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=7.6e-05  Score=62.35  Aligned_cols=100  Identities=9%  Similarity=0.005  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 010459          206 SPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAI  285 (510)
Q Consensus       206 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  285 (510)
                      .|+...+...-..|.+.|++++|...|++..+.. +.+...|+.+-.+|.+.|++++|+..|+...+.... +..+|..+
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l   78 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL   78 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence            3677778888889999999999999999887765 457888999999999999999999999998865322 57788899


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh
Q 010459          286 LDAYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       286 l~~~~~~g~~~~a~~~~~~m~~  307 (510)
                      ..+|...|++++|...|+...+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.83  E-value=0.0001  Score=55.17  Aligned_cols=84  Identities=14%  Similarity=0.048  Sum_probs=36.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010459          149 LCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEI  228 (510)
Q Consensus       149 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  228 (510)
                      +.+.|++++|+..|++..+... -+...|..+..++.+.|++++|+..|++..+.... +..+|..+...|...|++++|
T Consensus        26 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~A  103 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAA  103 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHHH
Confidence            3344444444444444443321 13444444444444444444444444444432211 334444444444444444444


Q ss_pred             HHHHHH
Q 010459          229 DMCLKM  234 (510)
Q Consensus       229 ~~~~~~  234 (510)
                      .+.|++
T Consensus       104 ~~~l~~  109 (112)
T d1hxia_         104 LASLRA  109 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=0.01  Score=53.07  Aligned_cols=294  Identities=10%  Similarity=0.047  Sum_probs=165.6

Q ss_pred             CChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          101 WTKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSI  180 (510)
Q Consensus       101 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  180 (510)
                      ||..--..+.+-|.+.|.++.|..+|..+.          -|..++..|.+.++++.|.+++....      +..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence            333444578888999999999999998654          36778899999999999999887653      67899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010459          181 IHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLL  260 (510)
Q Consensus       181 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  260 (510)
                      ...+.+.....-|     .+.......+......++..|-..|..++...+++...... .++...++-++..|++.+ .
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence            9999988766543     23344455577777889999999999999999999876432 567788899999998875 4


Q ss_pred             HHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 010459          261 KRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDLGDDL  340 (510)
Q Consensus       261 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  340 (510)
                      ++-.+.++...   -.   .-..-++..|-..+-+.++.-++..+-+.        -+++..++.......+........
T Consensus       149 ~kl~e~l~~~s---~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~--------~~A~~~~i~~~~~~~~~~~f~e~~  214 (336)
T d1b89a_         149 QKMREHLELFW---SR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY--------DNAIITMMNHPTDAWKEGQFKDII  214 (336)
T ss_dssp             HHHHHHHHHHS---TT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH--------HHHHHHHHHSTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhcc---cc---CCHHHHHHHHHHcCChHHHHHHHHhcCCH--------HHHHHHHHHcchhhhhHHHHHHHH
Confidence            44444443331   11   22234556676666666666555543211        011111111111110111110001


Q ss_pred             HhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChhHHHHHHHhhhhCCCCCCHHH
Q 010459          341 ASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMKDFKHLRVLLSELPTRHVKPDIVT  420 (510)
Q Consensus       341 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  420 (510)
                      ..  ..++..|...+..|... +++-...++..+... +  |.   .-++.-+-+.++.......++...+.|   +...
T Consensus       215 ~k--~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~v  282 (336)
T d1b89a_         215 TK--VANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR-L--DH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSV  282 (336)
T ss_dssp             HH--CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG-C--CH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHH
T ss_pred             Hc--cCChHHHHHHHHHHHHc-CHHHHHHHHHHhccC-C--CH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHH
Confidence            11  12334444445444432 233333444433332 1  11   345555666777777777776665554   3456


Q ss_pred             HHHHHHhhhhcCccchHHHHHHH
Q 010459          421 IGILYDARRIGFDGTGALEMWKR  443 (510)
Q Consensus       421 ~~~li~~~~~~~~~~~a~~~~~~  443 (510)
                      .+++...|...++++.-...++.
T Consensus       283 n~al~~lyie~~d~~~l~~~i~~  305 (336)
T d1b89a_         283 NESLNNLFITEEDYQALRTSIDA  305 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCcchhHHHHHHHHH
Confidence            77777777777776555444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.78  E-value=0.00011  Score=54.98  Aligned_cols=85  Identities=11%  Similarity=-0.018  Sum_probs=38.4

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFN  191 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  191 (510)
                      .+.+.|++++|...|+...+.  .+-+...|..+-.+|.+.|++++|+..|+...+.. +.+..+|..+...|...|+.+
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence            344444555555555444431  11234444444444444555555555554444432 123444444444455555555


Q ss_pred             HHHHHHHH
Q 010459          192 EALLFLNE  199 (510)
Q Consensus       192 ~a~~~~~~  199 (510)
                      +|++.|++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=9.4e-05  Score=56.20  Aligned_cols=105  Identities=6%  Similarity=-0.069  Sum_probs=68.1

Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhhh---hcccccHHHHHHHHHHCCCCcCH-HHHHHHHHHHHc
Q 010459          320 LAEVYIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHAC---LLSHRGIDSVVREMESAKVRWNV-TTANIILLAYLK  395 (510)
Q Consensus       320 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~  395 (510)
                      |+..+...+++++|.+.++......+.++.++..+..++..   .++.++|+++|++..+.+..|+. .+|..+..+|.+
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            44444445555555555555555555555555555555543   33446688889988877655543 467778889999


Q ss_pred             CCChhHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 010459          396 MKDFKHLRVLLSELPTRHVKPDIVTIGILYD  426 (510)
Q Consensus       396 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~  426 (510)
                      .|++++|.+.|++..+  +.|+......+..
T Consensus        85 ~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~  113 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQ--TEPQNNQAKELER  113 (122)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence            9999999999999987  4577655444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00011  Score=55.91  Aligned_cols=92  Identities=11%  Similarity=0.043  Sum_probs=39.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 010459          145 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGK---FNEALLFLNEMKEMNLSPQ-SDTYDGLIQAYG  220 (510)
Q Consensus       145 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~  220 (510)
                      +++.+...+++++|.+.|+...+.+ +.+..++..+..++.+.++   .++|+++|++....+..|+ ..+|..|-.+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3344444444455555554444433 2234444444444443332   2234444444443332222 123344444444


Q ss_pred             ccCCHHHHHHHHHHHHh
Q 010459          221 KYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~~  237 (510)
                      +.|++++|.+.|++..+
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            44445444444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.68  E-value=0.0081  Score=53.75  Aligned_cols=138  Identities=11%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010459          171 KPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLL  250 (510)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  250 (510)
                      .||..--..+.+-|-+.|.++.|..+|..+.         -|..++..|.+.++++.|..++....      +..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV   75 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence            4566666677788889999999999998652         35677888888999999888876553      66788888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Q 010459          251 IQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYM  329 (510)
Q Consensus       251 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  329 (510)
                      ...+.+......|     .+.......+......++..|-..|..++...+++..... -..+...++-++..|++.+.
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~  148 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP  148 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh
Confidence            8888888766543     2233334456666778889999999999988888877643 25677788888888888654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.52  E-value=0.022  Score=49.01  Aligned_cols=61  Identities=11%  Similarity=0.037  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 010459          141 NSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSK----IGKFNEALLFLNEMKEMN  204 (510)
Q Consensus       141 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  204 (510)
                      .+..|-..+-+.|++++|++.|++..+.|   |...+..|-..|..    ..+...|...+..-...+
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            33444444445555555555555555443   33444444444443    334555555555544443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=0.00097  Score=54.23  Aligned_cols=69  Identities=9%  Similarity=0.045  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCccCHH
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSML-----TKRMHLRSS  280 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~  280 (510)
                      .+..+...+.+.|++++|...++++.+.. +-+...|..++.+|.+.|+.++|++.|+++.     +.|+.|...
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            44555666666666666666666665543 3455666666666666666666666666543     235555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.003  Score=50.76  Aligned_cols=62  Identities=6%  Similarity=-0.079  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +|+.+..+|.+.|++++|...++...+.. +.++..|..+..+|...|++++|...|+...+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            45556666666666666666666666553 335666666666666666666666666666654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0029  Score=50.83  Aligned_cols=62  Identities=10%  Similarity=-0.044  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      +|+.+..+|.+.|++++|+..++..++.... +..+|..+..+|...|++++|...|++..+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3444555555555555555555555543211 4455555555555555555555555555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.37  E-value=0.0022  Score=52.06  Aligned_cols=72  Identities=13%  Similarity=0.040  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 010459          174 LEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMK-----LDGCSPDHIT  246 (510)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~  246 (510)
                      ...+..+...+.+.|++++|+..++++.+.... +...|..++.+|.+.|+.++|.+.|+++.     +.|+.|...+
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            456778888899999999999999998886533 78889999999999999999999998874     3588887655

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.36  E-value=0.0042  Score=48.81  Aligned_cols=62  Identities=13%  Similarity=-0.026  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +|+.+..+|.+.|++++|...+++..+.. +.+..+|..+..+|...|++++|+..|+...+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44445555555555555555555554443 334555555555555555555555555555543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0023  Score=48.68  Aligned_cols=89  Identities=10%  Similarity=0.156  Sum_probs=42.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC-----HHHHHHHHHHHH
Q 010459          147 GMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLS-PQ-----SDTYDGLIQAYG  220 (510)
Q Consensus       147 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-----~~t~~~li~~~~  220 (510)
                      ..|.+.|++++|+..|++..+.+ +.+..+|..+-.+|.+.|++++|++.++++++.... ++     ..+|..+-..+.
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~   90 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555443 124455555555555555555555555554432100 00     123444444444


Q ss_pred             ccCCHHHHHHHHHHHH
Q 010459          221 KYKMYDEIDMCLKMMK  236 (510)
Q Consensus       221 ~~g~~~~a~~~~~~m~  236 (510)
                      ..+++++|...|+...
T Consensus        91 ~~~~~~~A~~~~~kal  106 (128)
T d1elra_          91 KEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHH
Confidence            5555555555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0039  Score=47.30  Aligned_cols=93  Identities=12%  Similarity=0.037  Sum_probs=48.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---c--cC-HHHHHHHHH
Q 010459          214 GLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRM---H--LR-SSTMVAILD  287 (510)
Q Consensus       214 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--p~-~~t~~~ll~  287 (510)
                      .+-..|.+.|++++|...|.+..+.. +.+...|..+-.+|.+.|++++|++.+++..+...   .  +. ..+|..+-.
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34445555555666666655555543 23455555555666666666666666655543210   0  00 124445555


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 010459          288 AYMNFGMLDKMEKFYKRLLN  307 (510)
Q Consensus       288 ~~~~~g~~~~a~~~~~~m~~  307 (510)
                      .+...+++++|.+.|.....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            55556666666666655543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=0.0057  Score=48.89  Aligned_cols=63  Identities=5%  Similarity=-0.204  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          210 DTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       210 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      ..|..+-.+|.+.|++++|...+++..+.. +.+...|..+-.+|...|++++|++.|+...+.
T Consensus        78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344555556666666666666666665543 335556666666666666666666666666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.11  E-value=0.014  Score=45.63  Aligned_cols=24  Identities=13%  Similarity=-0.128  Sum_probs=12.6

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHH
Q 010459          213 DGLIQAYGKYKMYDEIDMCLKMMK  236 (510)
Q Consensus       213 ~~li~~~~~~g~~~~a~~~~~~m~  236 (510)
                      ..-...+.+.|++.+|...|.+..
T Consensus        21 ~~~G~~~f~~~~y~~A~~~Y~~al   44 (153)
T d2fbna1          21 KEEGNEFFKKNEINEAIVKYKEAL   44 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333444555555555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.03  E-value=0.078  Score=45.26  Aligned_cols=205  Identities=10%  Similarity=0.027  Sum_probs=139.7

Q ss_pred             ChhhHHHHHHHHHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010459          102 TKDHFWAVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCE----EGLMEEAVRAFQEMEGFALKPSLEIY  177 (510)
Q Consensus       102 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~  177 (510)
                      ||..+..+-..+.+.+++++|.+.|+...+ .|   |...+-.|-.+|..    ..+...|...+....+.+   +...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~-~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            455666777777889999999999998876 43   55566667777776    578999999999988754   44555


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010459          178 NSIIHGYSK----IGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEIDMCLKMMKLDGCSPDHITYNL  249 (510)
Q Consensus       178 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~  249 (510)
                      ..+...+..    ..+.+.|...++...+.|..   .....+...+..    ......+...+.....   ..+...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhh
Confidence            555555543    45788999999998887742   333333333332    3456777788877665   356777888


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010459          250 LIQEFAC----AGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSRTPLKEDLVRKLA  321 (510)
Q Consensus       250 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  321 (510)
                      +...|..    ..+...+...++...+.|   +......+-..|..    ..+.++|.++|....+.|   ++..+..|-
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG  221 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence            8887776    456778888888777765   44455555444544    567888888888887776   333444444


Q ss_pred             HHHH
Q 010459          322 EVYI  325 (510)
Q Consensus       322 ~~~~  325 (510)
                      .+|.
T Consensus       222 ~~y~  225 (265)
T d1ouva_         222 AMQY  225 (265)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.02  E-value=0.0097  Score=47.47  Aligned_cols=81  Identities=7%  Similarity=-0.082  Sum_probs=61.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010459          243 DHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAE  322 (510)
Q Consensus       243 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  322 (510)
                      +...|..+-.+|.+.|++++|+..+++..+... -+..+|..+..++...|++++|.+.|....+.. +.+..+...+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            455677778889999999999999999887643 267788889999999999999999999988764 234455555544


Q ss_pred             HHH
Q 010459          323 VYI  325 (510)
Q Consensus       323 ~~~  325 (510)
                      ++.
T Consensus       154 ~~~  156 (169)
T d1ihga1         154 VKQ  156 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.02  E-value=0.00066  Score=59.11  Aligned_cols=51  Identities=20%  Similarity=0.156  Sum_probs=28.4

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKE  202 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  202 (510)
                      +.|++++|+..+++..+.. +.|...+..+...|+..|++++|.+.|+...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455556666555555543 22455555555556666666666555555554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.01  E-value=0.00062  Score=59.27  Aligned_cols=123  Identities=10%  Similarity=-0.047  Sum_probs=78.3

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRM  263 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  263 (510)
                      ..+.|++++|++.+++.++.... |...+..+...|+..|++++|.+.|+...+.. +-+...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence            34678899999999998887543 77888999999999999999999999887653 12344444444443333333322


Q ss_pred             HHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 010459          264 EGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNS  308 (510)
Q Consensus       264 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~  308 (510)
                      ..-...-...+-+++...+......+...|+.++|.+.+.++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            211111011111223344455566677788999999988887764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.97  E-value=0.015  Score=46.33  Aligned_cols=62  Identities=6%  Similarity=0.016  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          176 IYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       176 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      .|+.+-.+|.+.|++++|+..++..++... .+..+|..+..+|...|++++|...|++..+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344455555566666666666665555432 24555555556666666666666666665554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.91  E-value=0.046  Score=43.25  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010459          211 TYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTK  273 (510)
Q Consensus       211 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  273 (510)
                      +|+.+-.+|.+.|++++|...++...+.. +.+..+|..+..+|...|++++|.+.|+...+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44556666677777777777777766554 446667777777777777777777777777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.73  E-value=0.0046  Score=48.05  Aligned_cols=69  Identities=10%  Similarity=-0.015  Sum_probs=33.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIG----------KFNEALLFLNEMKEMNLSPQSDTYDGLIQAYG  220 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  220 (510)
                      +.+.+++|+..|+...+.. +.|..+|..+-.++...+          .+++|++.|++..+.... +..+|..+-..|.
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~   86 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence            4445666666666665543 224455555555554332          234455555555443221 3444444444444


Q ss_pred             c
Q 010459          221 K  221 (510)
Q Consensus       221 ~  221 (510)
                      .
T Consensus        87 ~   87 (145)
T d1zu2a1          87 S   87 (145)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0006  Score=65.72  Aligned_cols=112  Identities=8%  Similarity=-0.170  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010459          244 HITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEV  323 (510)
Q Consensus       244 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  323 (510)
                      ...|..+-..+.+.|+.++|...+.......   ...++..+-..+...|++++|...|.+..+.. +-+...|+.|...
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL  195 (497)
T ss_dssp             -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence            3344444445555555555555444333211   11344445555555555555555555555443 2233455555555


Q ss_pred             HHhhcchhHHHHHHHHHHhhcCCchHHHHHHHHHhh
Q 010459          324 YIKNYMFSRLDDLGDDLASRIGRTELVWCLRLLSHA  359 (510)
Q Consensus       324 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  359 (510)
                      |...|+..+|...+.......++.+.++..+...+.
T Consensus       196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            555555555555555555555555555555544433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.62  E-value=0.0057  Score=47.52  Aligned_cols=117  Identities=8%  Similarity=0.026  Sum_probs=76.7

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010459          184 YSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKY----------KMYDEIDMCLKMMKLDGCSPDHITYNLLIQE  253 (510)
Q Consensus       184 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  253 (510)
                      |-+.+.+++|.+.|+...+.... +..++..+-.+|...          +.+++|...|++..+.. +.+..+|..+-.+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            34556688999999998876532 666777777777643          44577888888887664 4567788877777


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459          254 FACAGL-----------LKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT  310 (510)
Q Consensus       254 ~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  310 (510)
                      |...|+           +++|.+.|+...+.  .|+...|..-+..+      .++.+++.+..+.|+
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            766543           46677777766654  45555555444433      455666666666553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.49  E-value=0.022  Score=44.52  Aligned_cols=55  Identities=9%  Similarity=-0.023  Sum_probs=27.0

Q ss_pred             HHHhcCCCCcHHHHHHHHHhhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010459          112 FLKNSSRSRQIPQVFDMWKNIEKSRIN----------EFNSQKIIGMLCEEGLMEEAVRAFQEME  166 (510)
Q Consensus       112 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~  166 (510)
                      .+.+.|++++|.+.|+...+...-.|+          ...|+.+-.+|.+.|++++|..-+++..
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            344456666666666655543222222          2344455555555555555555554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0011  Score=63.90  Aligned_cols=134  Identities=7%  Similarity=-0.103  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcchhHHHHH
Q 010459          258 GLLKRMEGTYKSMLTKRMHL-RSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRTPLKEDLVRKLAEVYIKNYMFSRLDDL  336 (510)
Q Consensus       258 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  336 (510)
                      +.++.|+..+....  ++.| +...+..+-..+.+.|+.++|...+....+..   ....+..+.+.+...+++++|...
T Consensus       100 ~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1         100 GFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHTC---------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence            34444444443332  2233 44566667777788888888887776655422   134677788899999999999999


Q ss_pred             HHHHHhhcCCchHHHHHHHHHhhhhcccccHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010459          337 GDDLASRIGRTELVWCLRLLSHACLLSHRGIDSVVREMESAKVRWNVTTANIILLAYLKMK  397 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  397 (510)
                      +.......+.+...|+.+...+...|+..+|...|.+...... |-..++..|...+.+..
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999887654 57788888888776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.33  E-value=0.031  Score=43.64  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHH
Q 010459          210 DTYDGLIQAYGKYKMYDEIDMCLKMM  235 (510)
Q Consensus       210 ~t~~~li~~~~~~g~~~~a~~~~~~m  235 (510)
                      .+|+.+-.+|.+.|++++|...+++.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhh
Confidence            34445555555555555555544443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.13  Score=35.84  Aligned_cols=60  Identities=10%  Similarity=-0.069  Sum_probs=26.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010459          179 SIIHGYSKIGKFNEALLFLNEMKEM-----NLSPQ-SDTYDGLIQAYGKYKMYDEIDMCLKMMKLD  238 (510)
Q Consensus       179 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~  238 (510)
                      .+...+.+.|++++|...|++..+.     ...++ ..+++.|..+|.+.|++++|...+++..+.
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3444444455555555444444321     00111 234444555555555555555555554443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.079  Score=37.13  Aligned_cols=62  Identities=6%  Similarity=-0.005  Sum_probs=30.1

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHhhcC----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010459          107 WAVIRFLKNSSRSRQIPQVFDMWKNIEK----SRIN-EFNSQKIIGMLCEEGLMEEAVRAFQEMEGF  168 (510)
Q Consensus       107 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  168 (510)
                      ..+-..+.+.|++++|.+.|+...+...    ..++ ..+++.|-.+|.+.|++++|+..+++..+.
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3444555555666666655554443211    1111 234455555555555555555555555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.04  E-value=0.78  Score=33.94  Aligned_cols=48  Identities=6%  Similarity=-0.032  Sum_probs=23.2

Q ss_pred             CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 010459          259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMN----FGMLDKMEKFYKRLLNSR  309 (510)
Q Consensus       259 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~  309 (510)
                      +.++|+++|+.-.+.|   ++.....|-..|..    ..+.++|.++++...+.|
T Consensus        74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            4555555555555554   22233333333333    235555666665555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.50  E-value=0.99  Score=33.33  Aligned_cols=111  Identities=11%  Similarity=-0.035  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 010459          154 LMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK----YKMYDEID  229 (510)
Q Consensus       154 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~  229 (510)
                      |+++|++.|++..+.|..   ..+..|..  ....+.++|++.+++.-+.|   +...+..|-..|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            566777777777666522   22223322  23456778888888877766   45555556555554    35678888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 010459          230 MCLKMMKLDGCSPDHITYNLLIQEFAC----AGLLKRMEGTYKSMLTKRM  275 (510)
Q Consensus       230 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  275 (510)
                      ++|++..+.|   +......|-..|..    ..+.++|.++|+.-.+.|.
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888887765   33344444444544    3577788888887777663

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=89.31  E-value=2.8  Score=30.26  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=95.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010459          151 EEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDM  230 (510)
Q Consensus       151 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~  230 (510)
                      -.|.+++..++..+..+   ..+..-||.+|--....-+-+...++++..-.- +  |          ..+|+++.....
T Consensus        14 ldG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHHHH
Confidence            45777777887777765   335666777776666666666666666555221 1  1          124555555555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 010459          231 CLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLLNSRT  310 (510)
Q Consensus       231 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~  310 (510)
                      .+-.+-     .+....+..++...+.|+-+.-.++++.+.+. -+|++.....+..||.+.|+..++-+++.+..+.|+
T Consensus        78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            544443     34455677788888999988888898887763 466777888888999999999999999998888885


Q ss_pred             C
Q 010459          311 P  311 (510)
Q Consensus       311 ~  311 (510)
                      .
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=87.30  E-value=3.9  Score=29.51  Aligned_cols=141  Identities=6%  Similarity=-0.070  Sum_probs=79.7

Q ss_pred             HHhcCCCCcHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 010459          113 LKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNE  192 (510)
Q Consensus       113 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  192 (510)
                      +...|..+++.++......    ..+..-||-+|.-....-+-+...++++.+-+.   -|.          ...+++..
T Consensus        12 ~ildG~ve~Gveii~k~~~----ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHcc----cCCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHH
Confidence            3456778888888887765    345566777777777777777777777766432   121          11222333


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010459          193 ALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEGTYKSMLT  272 (510)
Q Consensus       193 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  272 (510)
                      ....+-.+-     .+..-++.-++...+.|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+.-+
T Consensus        75 vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            322222221     123344555556666666666666666654443 55566666666666666666666666666666


Q ss_pred             CCCc
Q 010459          273 KRMH  276 (510)
Q Consensus       273 ~g~~  276 (510)
                      .|++
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            6654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.41  E-value=5.8  Score=28.55  Aligned_cols=23  Identities=13%  Similarity=-0.000  Sum_probs=10.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHh
Q 010459          215 LIQAYGKYKMYDEIDMCLKMMKL  237 (510)
Q Consensus       215 li~~~~~~g~~~~a~~~~~~m~~  237 (510)
                      |--+|.+.|++++|.+.++.+.+
T Consensus        79 Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          79 LTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHc
Confidence            33344444444444444444443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.20  E-value=6.2  Score=26.87  Aligned_cols=48  Identities=6%  Similarity=0.012  Sum_probs=32.2

Q ss_pred             CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010459          259 LLKRMEGTYKSMLTKRMHLRSSTMVAILDAYMNFGMLDKMEKFYKRLL  306 (510)
Q Consensus       259 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~  306 (510)
                      +.-++.+-++.+....+-|++....+.++||.+.+++..|.++++-++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344555555555566667777777777777777777777777776665