Citrus Sinensis ID: 010464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
ccccEEEEEEEEEEcEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEcccccccccEEEEEccccccccccccccccEEEcccccccc
cccHEEEcccccEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHcccHHHHHHHHHHHcccccEEEHHHHHcccccccEEEEEEcccccccccccEEEEEEEccHHHHHHccHHcccHHHHHHcccHHHHHHHccccccHHHHHHHccccHcccccccccEEEEEcccccccccccccHHHcccHHcccccEEHHHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccEEEEEcccccccccHHHccccEEEEccccccc
MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGrrifvvgdlniapaaidrcdagpdfakNEFRIWFRSMLVesggsffdvfrskhperreaytcwpsntgaeqfnygtridhilcagpclhqkhdlqshnfvtchvnecdilidykrwkpgnapsyrwkggmstrlegsdhapvymclgevpeipqhstpslasrylpiIRGVQQTLVSVLMKREVAkqgksckfsgslpaesnstgdtedcsenVDRSlnnycdsgilqgvycsssnqesegeFTKTIENCRdsanvashstitqgssnhispfhVDRARKKAkksqlgqlsLKSFFhkrsnvshddnnsitdtslnvnnsvtdtslsqeevpeshhhsnkipvtdyscsvhelhgvnssvcshdqdekkgkrfLDKERNNVALLEWRRIQQLMETsiplckghkepcvarvvkkpgptfgrRFFVcaraegpasnpeancgyfkwAFSKSKQK
MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAidrcdagpdFAKNEFRIWFRSMLVESGGSFFDVFRSKHPErreaytcwpsntgAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAkqgksckfsgslpaesnstgdteDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHstitqgssnhispFHVDRARKKAKKSQLGQLSLKSFFHKRSNVshddnnsitdtslnvNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGvnssvcshdqdekkgkrfldkernnvALLEWRRIQQLMETSiplckghkepCVARVVKKPGPTFGRRFFVCARAEgpasnpeancgyfkwafskskqk
MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
**FLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE**********************************LNNYCDSGILQGVYC**************************************************************************************************************VTDYSCSVHELHGV*********************RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP***PEANCGYFKWAF******
***LKLIVRDGVLLQIMVILFYSMCTGL*****IQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP*F**NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS******************************************************************************************************************************************************************************************************************************CKGHKEPCVARVVKKPGPTFGRRFFVCARAEG****PEANCGYFKWAFSK****
MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFS******************NVDRSLNNYCDSGILQGVYCS***********KTIENCRDSANVASHSTITQGSSNHISPFHV************GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT*****************KIPVTDYSCSVHELHGVNSS***********KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
*SFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR**************************************************************************************************************************************************************************************************ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS*****
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFLKLIVRDGVLLQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query510 2.2.26 [Sep-21-2011]
Q68G58516 DNA-(apurinic or apyrimid yes no 0.337 0.333 0.283 1e-16
Q9UBZ4518 DNA-(apurinic or apyrimid yes no 0.337 0.332 0.283 4e-15
Q5E9N9514 DNA-(apurinic or apyrimid yes no 0.017 0.017 0.538 1e-13
P87175523 DNA-(apurinic or apyrimid yes no 0.268 0.261 0.290 1e-08
Q8K203606 Endonuclease 8-like 3 OS= no no 0.084 0.070 0.469 4e-05
Q3MHN7606 Endonuclease 8-like 3 OS= no no 0.096 0.080 0.418 5e-05
P37454252 Exodeoxyribonuclease OS=B yes no 0.178 0.361 0.326 0.0004
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2 PE=1 SV=1 Back     alignment and function desciption
 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 43/215 (20%)

Query: 35  QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFR 92
           +L F + F   +  R E LL  G  + ++GDLN A   ID CDA     F ++  R W  
Sbjct: 166 RLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMD 225

Query: 93  SMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 145
            +L   G       G F D +R  HP+++ A+TCW   +GA   NYG+R+D++L      
Sbjct: 226 GLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL------ 279

Query: 146 HQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE 205
                            +  ++ID  +              +   + GSDH PV   L  
Sbjct: 280 ----------------GDRALVIDTFQ-----------ASFLLPEVMGSDHCPVGAVL-N 311

Query: 206 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 240
           V  +P    P+L +R+LP   G Q  ++  L+  E
Sbjct: 312 VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Function as a weak apurinic/apyrimidinic (AP) endodeoxyribonuclease in the DNA base excision repair (BER) pathway of DNA lesions induced by oxidative and alkylating agents. Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. Displays also double-stranded DNA 3'-5' exonuclease, 3'-phosphodiesterase activities. Shows robust 3'-5' exonuclease activity on 3'-recessed heteroduplex DNA and is able to remove mismatched nucleotides preferentially. Shows fairly strong 3'-phosphodiesterase activity involved in the removal of 3'-damaged termini formed in DNA by oxidative agents. In the nucleus functions in the PCNA-dependent BER pathway. Required for somatic hypermutation (SHM) and DNA cleavage step of class switch recombination (CSR) of immunoglobulin genes. Required for proper cell cycle progression during proliferation of peripheral lymphocytes.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 Back     alignment and function description
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 Back     alignment and function description
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 Back     alignment and function description
>sp|Q8K203|NEIL3_MOUSE Endonuclease 8-like 3 OS=Mus musculus GN=Neil3 PE=1 SV=1 Back     alignment and function description
>sp|Q3MHN7|NEIL3_BOVIN Endonuclease 8-like 3 OS=Bos taurus GN=NEIL3 PE=2 SV=1 Back     alignment and function description
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
255561291586 ap endonuclease, putative [Ricinus commu 0.888 0.773 0.575 1e-153
225431130 625 PREDICTED: DNA-(apurinic or apyrimidinic 0.892 0.728 0.546 1e-143
359476825596 PREDICTED: DNA-(apurinic or apyrimidinic 0.892 0.763 0.546 1e-142
224074261 617 predicted protein [Populus trichocarpa] 0.896 0.740 0.550 1e-136
449434154 611 PREDICTED: DNA-(apurinic or apyrimidinic 0.872 0.728 0.525 1e-131
147789500 632 hypothetical protein VITISV_019797 [Viti 0.849 0.685 0.533 1e-130
356502118 622 PREDICTED: DNA-(apurinic or apyrimidinic 0.888 0.728 0.515 1e-128
357518059 613 DNA-(apurinic or apyrimidinic site) lyas 0.878 0.730 0.506 1e-125
297798308 616 endonuclease/exonuclease/phosphatase fam 0.819 0.678 0.502 1e-113
79610414610 endonuclease 2 [Arabidopsis thaliana] gi 0.829 0.693 0.501 1e-113
>gi|255561291|ref|XP_002521656.1| ap endonuclease, putative [Ricinus communis] gi|223539047|gb|EEF40643.1| ap endonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/476 (57%), Positives = 337/476 (70%), Gaps = 23/476 (4%)

Query: 35  QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
           ++ F L F + +  RWE LL QGRRIFVVGDLNIAP A+DRCDA PDF KNEFRIWFRSM
Sbjct: 134 RIHFKLLFYNILQKRWESLLQQGRRIFVVGDLNIAPTAMDRCDADPDFEKNEFRIWFRSM 193

Query: 95  LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
           LV+SGG FFDVFRSKHP+RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ+HD Q H
Sbjct: 194 LVKSGGPFFDVFRSKHPDRREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQEHDFQVH 253

Query: 155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
           +FV+CH+ +CDILIDYKRWKPG+  + RWKGG  T+LEGSDHAPVY  L E+P+IPQH T
Sbjct: 254 DFVSCHMKDCDILIDYKRWKPGD--TMRWKGGWGTKLEGSDHAPVYTSLVEIPDIPQHGT 311

Query: 215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
           PSL++RYLP+I G QQTLVSVLMKR+ + Q  S    G++  ++        C+E++ + 
Sbjct: 312 PSLSARYLPMIHGFQQTLVSVLMKRQASTQVSSSFSDGNVTIKA--------CNESI-KG 362

Query: 275 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 334
           L N C+         S + ++S+G   +  ++C+D ++     +     S HI+  H + 
Sbjct: 363 LYNNCNISDHSASDSSCATKDSDGAILRMEKHCKDFSDQTCSDSTIMLQSRHINSMHTEG 422

Query: 335 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 394
            +KKA+KSQ  QLSL+SFF +  N           T     N+  D S SQE V  S+  
Sbjct: 423 TKKKARKSQCSQLSLRSFFQRTPN-----------TRSGAENTALDISHSQENVSNSNSP 471

Query: 395 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 454
            ++    D   +     G+NSS  + DQDE       +KE+NNVALLEW+RIQQLM+ SI
Sbjct: 472 PSETASQDDHNNTPGHCGLNSSSGTQDQDEINNGP-SEKEKNNVALLEWQRIQQLMQNSI 530

Query: 455 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 510
           PLCKGHKEPCV+R+VKKPGPT G RF+VCARAEGPASNPEANCGYFKWA SKS+QK
Sbjct: 531 PLCKGHKEPCVSRIVKKPGPTCGHRFYVCARAEGPASNPEANCGYFKWASSKSRQK 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431130|ref|XP_002265926.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476825|ref|XP_003631894.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224074261|ref|XP_002304326.1| predicted protein [Populus trichocarpa] gi|222841758|gb|EEE79305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434154|ref|XP_004134861.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cucumis sativus] gi|449491354|ref|XP_004158869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147789500|emb|CAN69587.1| hypothetical protein VITISV_019797 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502118|ref|XP_003519868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357518059|ref|XP_003629318.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula] gi|355523340|gb|AET03794.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297798308|ref|XP_002867038.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312874|gb|EFH43297.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79610414|ref|NP_974691.2| endonuclease 2 [Arabidopsis thaliana] gi|332661207|gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query510
TAIR|locus:2135164610 AT4G36050 [Arabidopsis thalian 0.686 0.573 0.506 2.9e-87
ZFIN|ZDB-GENE-040426-835558 apex2 "APEX nuclease (apurinic 0.103 0.094 0.629 2e-32
MGI|MGI:1924872516 Apex2 "apurinic/apyrimidinic e 0.154 0.153 0.425 2.7e-31
UNIPROTKB|F1RUD3515 LOC100519003 "Uncharacterized 0.137 0.135 0.450 4.2e-30
UNIPROTKB|Q9UBZ4518 APEX2 "DNA-(apurinic or apyrim 0.096 0.094 0.591 5.5e-29
UNIPROTKB|E2RCW8515 APEX2 "Uncharacterized protein 0.098 0.097 0.56 3.8e-28
UNIPROTKB|J9NYZ7515 APEX2 "Uncharacterized protein 0.098 0.097 0.56 3.8e-28
RGD|1586200516 Apex2l1 "APEX nuclease (apurin 0.205 0.203 0.368 5.1e-28
UNIPROTKB|F1MSK4514 APEX2 "DNA-(apurinic or apyrim 0.098 0.097 0.56 5.6e-28
UNIPROTKB|Q5E9N9514 APEX2 "DNA-(apurinic or apyrim 0.098 0.097 0.56 5.6e-28
TAIR|locus:2135164 AT4G36050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 182/359 (50%), Positives = 237/359 (66%)

Query:    35 QLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM 94
             ++EF   F   +  RWE LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+
Sbjct:   164 RIEFKHRFYGVLERRWECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSL 223

Query:    95 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 154
             LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ  D Q H
Sbjct:   224 LVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGH 283

Query:   155 NFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 214
             +F+ CHV ECDIL +YKR+K  N P+ RWKGG+ T+ +GSDH PV++   ++P+IP+HST
Sbjct:   284 SFLACHVKECDILTEYKRFKNENMPT-RWKGGLVTKFKGSDHVPVFISFDDLPDIPEHST 342

Query:   215 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 274
             P LASRYLP+I G QQTLVSV  KR   ++ K+ + S S   +SN++    D S      
Sbjct:   343 PPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---P 399

Query:   275 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 334
             L N    GI     CS  N+ + G  T+  E    + ++ + S   + SS        D 
Sbjct:   400 LRNCGSMGISLEKSCSFENKSTSG-VTEA-ETVAATGSIDNLSDGIRASSVRALNISRDG 457

Query:   335 ARKKAKKSQLGQLSLKSFFHKRSNVSH--DDNNSITDTSLNVN-NSVTDTSLSQEEVPE 390
              RKKA+K Q  QLSLKSFF   S V++  D ++S   +S +    S+T+ ++S +E  E
Sbjct:   458 DRKKARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSE 516
GO:0004518 "nuclease activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0048573 "photoperiodism, flowering" evidence=RCA
ZFIN|ZDB-GENE-040426-835 apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease) 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1924872 Apex2 "apurinic/apyrimidinic endonuclease 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUD3 LOC100519003 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBZ4 APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCW8 APEX2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYZ7 APEX2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1586200 Apex2l1 "APEX nuclease (apurinic/apyrimidinic endonuclease) 2-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MSK4 APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9N9 APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
cd09088309 cd09088, Ape2-like_AP-endo, Human Ape2-like subfam 9e-34
COG0708261 COG0708, XthA, Exonuclease III [DNA replication, r 2e-16
cd09073251 cd09073, ExoIII_AP-endo, Escherichia coli exonucle 4e-15
cd09086254 cd09086, ExoIII-like_AP-endo, Escherichia coli exo 5e-13
TIGR00633255 TIGR00633, xth, exodeoxyribonuclease III (xth) 4e-11
cd09087253 cd09087, Ape1-like_AP-endo, Human Ape1-like subfam 2e-10
TIGR00195254 TIGR00195, exoDNase_III, exodeoxyribonuclease III 1e-09
cd09085252 cd09085, Mth212-like_AP-endo, Methanothermobacter 6e-08
PRK13911250 PRK13911, PRK13911, exodeoxyribonuclease III; Prov 1e-06
pfam0683945 pfam06839, zf-GRF, GRF zinc finger 3e-06
cd10281253 cd10281, Nape_like_AP-endo, Neisseria meningitides 4e-05
PRK11756268 PRK11756, PRK11756, exonuclease III; Provisional 0.003
>gnl|CDD|197322 cd09088, Ape2-like_AP-endo, Human Ape2-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information 
 Score =  129 bits (326), Expect = 9e-34
 Identities = 66/182 (36%), Positives = 79/182 (43%), Gaps = 48/182 (26%)

Query: 36  LEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-------GPDFAKNEFR 88
           LEF L F   +  R E LL  GRR+ +VGD+N++   ID CD        G  F  N  R
Sbjct: 162 LEFKLDFYRLLEERVEALLKAGRRVILVGDVNVSHRPIDHCDPDDSEDFGGESFEDNPSR 221

Query: 89  IWFRSMLVES-------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 141
            W   +L +S       GG   D FR  HP R+ AYTCW + TGA   NYGTRID+IL  
Sbjct: 222 QWLDQLLGDSGEGGGSPGGLLIDSFRYFHPTRKGAYTCWNTLTGARPTNYGTRIDYILAD 281

Query: 142 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYM 201
              L               V   DIL +                     +EGSDH PVY 
Sbjct: 282 RGLLPW-------------VKAADILPE---------------------VEGSDHCPVYA 307

Query: 202 CL 203
            L
Sbjct: 308 DL 309

This subfamily includes human APE2, Saccharomyces cerevisiae Apn2/Eth1, and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For examples, Ape1 and Ape2 in humans, and Apn1 and Apn2 in bakers yeast. Ape2 and Apn2/Eth1 are both found in this subfamily, and have the weaker AP endonuclease activity. Ape2 shows strong 3'-5' exonuclease and 3'-phosphodiesterase activities; it can reduce the mutagenic consequences of attack by reactive oxygen species by removing 3'-end adenine opposite from 8-oxoG, in addition to repairing 3'-damaged termini. Apn2/Eth1 exhibits AP endonuclease activity, but has 30-40 fold more active 3'-phosphodiesterase and 3'-5' exonuclease activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily. Length = 309
>gnl|CDD|223780 COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|197307 cd09073, ExoIII_AP-endo, Escherichia coli exonuclease III (ExoIII)-like apurinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|197320 cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|233064 TIGR00633, xth, exodeoxyribonuclease III (xth) Back     alignment and domain information
>gnl|CDD|197321 cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III Back     alignment and domain information
>gnl|CDD|197319 cd09085, Mth212-like_AP-endo, Methanothermobacter thermautotrophicus Mth212-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|139971 PRK13911, PRK13911, exodeoxyribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|219199 pfam06839, zf-GRF, GRF zinc finger Back     alignment and domain information
>gnl|CDD|197336 cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|236970 PRK11756, PRK11756, exonuclease III; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 510
COG0708261 XthA Exonuclease III [DNA replication, recombinati 100.0
PRK13911250 exodeoxyribonuclease III; Provisional 100.0
PRK11756268 exonuclease III; Provisional 99.97
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 99.95
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 99.93
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 99.83
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 99.7
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 99.47
PF0683945 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc 99.35
PRK05421263 hypothetical protein; Provisional 98.98
COG3568259 ElsH Metal-dependent hydrolase [General function p 98.87
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 98.86
KOG3873422 consensus Sphingomyelinase family protein [Signal 98.73
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 98.53
PTZ00297 1452 pantothenate kinase; Provisional 98.52
COG3021309 Uncharacterized protein conserved in bacteria [Fun 98.42
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 98.09
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 97.81
KOG1956758 consensus DNA topoisomerase III alpha [Replication 97.31
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 97.25
KOG4399 325 consensus C2HC-type Zn-finger protein [General fun 97.03
KOG2338495 consensus Transcriptional effector CCR4-related pr 96.68
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 96.47
COG2374798 Predicted extracellular nuclease [General function 95.54
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 95.08
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 91.55
KOG05661080 consensus Inositol-1,4,5-triphosphate 5-phosphatas 90.42
KOG0620361 consensus Glucose-repressible alcohol dehydrogenas 90.07
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 89.28
COG5411460 Phosphatidylinositol 5-phosphate phosphatase [Sign 85.95
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-37  Score=306.70  Aligned_cols=162  Identities=33%  Similarity=0.546  Sum_probs=145.1

Q ss_pred             ecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC--
Q 010464            7 IVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--   79 (510)
Q Consensus         7 ~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~--   79 (510)
                      .|.|||+|     .|.|+|+|+||+.....+|+.  ||++|++.|+.+++++++.|++||||||||++|.+||.+++.  
T Consensus        87 ~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~--yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~  164 (261)
T COG0708          87 DDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFD--YKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKR  164 (261)
T ss_pred             ccccCcEEEEEECCEEEEEEEcCCCCCCCCcchH--HHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhh
Confidence            57789999     699999999999986688998  999999999999999999999999999999999999988762  


Q ss_pred             ------CCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCcccccccccc
Q 010464           80 ------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQS  153 (510)
Q Consensus        80 ------~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~  153 (510)
                            .+|.+.| |.||+.||. .|  |+|+||.+||+... ||||+++.++++.|.|+||||||+|+.|+.       
T Consensus       165 ~~n~~~~~f~~ee-R~~~~~ll~-~G--~~D~~R~~~p~~~~-YTwW~YR~~~~~~n~G~RID~~l~S~~L~~-------  232 (261)
T COG0708         165 WLNEGNSGFLPEE-RAWFRRLLN-AG--FVDTFRLFHPEPEK-YTWWDYRANAARRNRGWRIDYILVSPALAD-------  232 (261)
T ss_pred             hhcCCCCCCCHHH-HHHHHHHHH-cc--hhhhhHhhCCCCCc-ccccccccchhhhcCceeEEEEEeCHHHHH-------
Confidence                  4677776 999999884 56  99999999999855 999999999888889999999999998863       


Q ss_pred             ccccccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEec
Q 010464          154 HNFVTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE  205 (510)
Q Consensus       154 ~~~~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~  205 (510)
                            ++++|.|+.+.|.|+                 ..||||||+++|++
T Consensus       233 ------~~~~a~I~~~~rg~e-----------------~pSDHaPV~~e~~~  261 (261)
T COG0708         233 ------RLKDAGIDREVRGWE-----------------KPSDHAPVWVELDL  261 (261)
T ss_pred             ------HHHhcCccHHHhcCC-----------------CCCCcCcEEEEecC
Confidence                  899999999877654                 67999999999863

>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair] Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription] Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query510
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 9e-19
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 1e-13
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 2e-12
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 1e-11
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 1e-11
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 1e-11
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 2e-11
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 6e-11
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 1e-10
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 1e-04
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467 Back     alignment and structure
 Score = 87.8 bits (217), Expect = 9e-19
 Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 50/197 (25%)

Query: 14  LQIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAI 73
           +Q            L+        +    ++                   GDLN+A    
Sbjct: 311 VQSFDPSMREYLHRLD-------TWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDY 363

Query: 74  DRCDAGP--DFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGA 126
           DR  AG      +      E R+ FR  +  +     D+FR  +P+    Y+ W      
Sbjct: 364 DRYYAGTFKSMQECSGFAPEERMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRING 421

Query: 127 EQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGG 186
              N G R+D+ +             S    + +V +C  +                   
Sbjct: 422 RPRNLGWRLDYFVV------------SSRLAS-YVVDCFPMPTVM--------------- 453

Query: 187 MSTRLEGSDHAPVYMCL 203
                 GSDH P  M +
Sbjct: 454 ------GSDHCPFQMWM 464
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268 Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238 Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Length = 318 Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Length = 285 Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Length = 257 Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Length = 256 Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Length = 259 Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Length = 265 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 99.96
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 99.95
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 99.92
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 99.91
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 99.91
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 99.91
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 99.91
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 99.9
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 99.84
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.8
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.71
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.6
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.6
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.59
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.53
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.52
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.5
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.49
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.42
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.42
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.33
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.21
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 98.65
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 98.27
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 98.25
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 98.24
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 97.85
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 97.69
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 97.68
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 97.44
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 95.03
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 94.14
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
Probab=99.96  E-value=2.7e-29  Score=243.66  Aligned_cols=159  Identities=25%  Similarity=0.413  Sum_probs=138.0

Q ss_pred             ecCCCCEE-----eEEEEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCCC--
Q 010464            7 IVRDGVLL-----QIMVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--   79 (510)
Q Consensus         7 ~d~eGr~~-----~fvLiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~~--   79 (510)
                      .|.+||++     .|+|+|||+|+... ..+|+.  +|++|++.|...+..+...+.+|||+||||+++.++|..+..  
T Consensus        91 ~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~--~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~  167 (265)
T 3g91_A           91 FDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLK--YKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKEN  167 (265)
T ss_dssp             HHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHH--HHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGG
T ss_pred             cCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHH--HHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhc
Confidence            46789998     58999999999986 468888  999999999999999877789999999999999999987642  


Q ss_pred             ---CCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccc
Q 010464           80 ---PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF  156 (510)
Q Consensus        80 ---~~f~~~e~R~wl~~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~  156 (510)
                         .+|.+.+ |.+|+.++ +.|  |+|+||.+||.. +.||||+.+.+++..|.|+||||||+++.++.          
T Consensus       168 ~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~-~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~----------  232 (265)
T 3g91_A          168 SNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP-GQYTWWSYRTRARERNVGWRLDYFFVNEEFKG----------  232 (265)
T ss_dssp             TTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS-CCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG----------
T ss_pred             CCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC-CCCCCcCCCCCccccCceEEEEEEEECHHHHh----------
Confidence               4566655 89999988 666  999999999987 48999999999999999999999999998753          


Q ss_pred             cccceeeEEEeccccccCCCCCCCccccCCCCCCCCCCCccceEEEEeccC
Q 010464          157 VTCHVNECDILIDYKRWKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGEVP  207 (510)
Q Consensus       157 ~~~~v~~~~Il~~~r~~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~~~  207 (510)
                         .+.++.|+..                     ..+|||+||+++|....
T Consensus       233 ---~~~~~~i~~~---------------------~~~SDH~Pv~~~~~~~~  259 (265)
T 3g91_A          233 ---KVKRSWILSD---------------------VMGSDHCPIGLEIELLE  259 (265)
T ss_dssp             ---GEEEEEECTT---------------------CCSSSBCCEEEEEECCC
T ss_pred             ---hhcEEEEeCC---------------------CCCCCcceEEEEhhhhh
Confidence               7899999863                     36899999999997643
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 510
d1akoa_268 d.151.1.1 (A:) DNA-repair enzyme exonuclease III { 9e-08
d1hd7a_275 d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human 3e-07
d2imqx1280 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug ( 5e-05
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 43/195 (22%)

Query: 17  MVILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRC 76
           + ++      G      I+      F  ++    E  L +   + ++GD+NI+P  +D  
Sbjct: 103 VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIG 162

Query: 77  DAGPDFAK----------NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGA 126
               +  +           E R W   ++        D FR  +P+  + ++ +   +  
Sbjct: 163 IGEENRKRWLRTGKCSFLPEEREWMDRLM---SWGLVDTFRHANPQTADRFSWFDYRSKG 219

Query: 127 EQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPSYRWKGG 186
              N G RID +L + P                   E  I  + +  +            
Sbjct: 220 FDDNRGLRIDLLLASQPLAE-------------CCVETGIDYEIRSME------------ 254

Query: 187 MSTRLEGSDHAPVYM 201
                + SDHAPV+ 
Sbjct: 255 -----KPSDHAPVWA 264
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Length = 280 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query510
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.79
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.78
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 99.69
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.55
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.5
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.29
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.27
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.24
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.04
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.02
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.01
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA repair endonuclease Hap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.1e-19  Score=167.22  Aligned_cols=147  Identities=27%  Similarity=0.381  Sum_probs=105.2

Q ss_pred             EEEEeecCCCCccchhhhhHHHHHHHHHHHHHHHHHHhcCCceEEeccccCCCCccccCCC-----CCCCCchHHHHHHH
Q 010464           18 VILFYSMCTGLELIVRIQLEFNLSFSSSMYYRWEFLLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFR   92 (510)
Q Consensus        18 LiNVY~P~~~~~~~eR~~~~fKl~F~~~L~~ri~~Ll~~g~~VIv~GDfNia~~~iD~~d~-----~~~f~~~e~R~wl~   92 (510)
                      +...+.+.... ..++..  |.......... .......+..++++||||+.+..++..+.     ...+...+ ..+|.
T Consensus       124 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~  198 (275)
T d1hd7a_         124 LVTAYVPNAGR-GLVRLE--YRQRWDEAFRK-FLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFG  198 (275)
T ss_dssp             EEEEECCCCCG-GGTTHH--HHHHHHHHHHH-HHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHH-HHHHH
T ss_pred             eeeeeeeeccc-cccchh--hhhhhcccccc-cccccccCCceEeecccccCcchhhhccchhhhccccccccc-chhhh
Confidence            34444443332 234444  44333333332 33333567899999999999887765532     12223333 67788


Q ss_pred             HHHHHcCCcccccccccCCCCCCCcccCCCCCCCcccCCcCceEEEEEcCCccccccccccccccccceeeEEEeccccc
Q 010464           93 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR  172 (510)
Q Consensus        93 ~lL~~~G~~lvDv~R~~hP~~~~~YTcws~~~~ar~~N~GsRIDyILvS~~l~~~~~~l~~~~~~~~~v~~~~Il~~~r~  172 (510)
                      .+|.+.|  |.|+||..||...+.||||+...+++..|+|.||||||+++.+.             .+|.++.|...   
T Consensus       199 ~~l~~~~--~~D~~r~~~p~~~~~~t~~~~~~~~~~~~~g~RIDyi~vs~~l~-------------~~v~~~~i~~~---  260 (275)
T d1hd7a_         199 ELLQAVP--LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLL-------------PALCDSKIRSK---  260 (275)
T ss_dssp             HHHHHTT--CEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGG-------------GGEEEEEECTT---
T ss_pred             hhhcccC--cccceeeecCCcCCceeeccccCCcccCCCCeEeEEEEeChHHh-------------hheeEEEECCC---
Confidence            8887766  99999999998878999999999988889999999999999875             37889999753   


Q ss_pred             cCCCCCCCccccCCCCCCCCCCCccceEEEEec
Q 010464          173 WKPGNAPSYRWKGGMSTRLEGSDHAPVYMCLGE  205 (510)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~gSDH~PV~~~L~~  205 (510)
                                        ..+|||+||+++|++
T Consensus       261 ------------------~~~SDH~PV~v~l~l  275 (275)
T d1hd7a_         261 ------------------ALGSDHCPITLYLAL  275 (275)
T ss_dssp             ------------------CCSSSBCCEEEEECC
T ss_pred             ------------------CCCCCcccEEEEEEC
Confidence                              468999999999964
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure