Citrus Sinensis ID: 010496
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 509 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MA50 | 500 | Pentatricopeptide repeat- | yes | no | 0.927 | 0.944 | 0.662 | 0.0 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.801 | 0.764 | 0.418 | 1e-101 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.956 | 0.770 | 0.383 | 1e-99 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.884 | 0.655 | 0.377 | 3e-97 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.876 | 0.639 | 0.383 | 1e-95 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.886 | 0.727 | 0.401 | 6e-94 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.870 | 0.526 | 0.396 | 1e-93 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.886 | 0.611 | 0.378 | 2e-92 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.872 | 0.816 | 0.380 | 1e-91 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.880 | 0.620 | 0.366 | 1e-91 |
| >sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 379/474 (79%), Gaps = 2/474 (0%)
Query: 33 IQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD 92
IQ +N +ST TV WTS I+ R+GR+AEAA EF+ MTL G PNHITFI LLSGC D
Sbjct: 25 IQRHN-QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGD 83
Query: 93 FPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTW 152
F S LG ++HG CKLGLDRN+VMVGTA++ MY+K GR A +VFD M K+S TW
Sbjct: 84 FTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTW 143
Query: 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE 212
N MIDGYMR G +++A +MFD+MP RD ISWTA++NGFVK+GY EEAL FREMQISGV+
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVK 203
Query: 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272
PDYV II+ LNAC N+G L GLW+HRYVL QDFK+NV+V N+LIDLY RCGC+EFARQV
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 273 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI 332
F M KRT+VSWNS+IVGFA NG E+L YF MQ++GFKPD V+FTGALTACSH GL+
Sbjct: 264 FYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLV 323
Query: 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLA 392
E+GLRYF IMK YR+SPRIEHYGC+VDLYSRAGRLEDAL +V++MPMKPNEVV+GSLLA
Sbjct: 324 EEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLA 383
Query: 393 ACRTKG-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451
AC G +I+LAERLMK+L DL+ SNYV+L+NMYAA GKW+GA K+RR MKG G++K
Sbjct: 384 ACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKK 443
Query: 452 KPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGEL 505
+PG SSIEI +H FMAGD +H+E+ +I +LEL+S DL+L G V ET+AG+L
Sbjct: 444 QPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVETLAGDL 497
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 274/411 (66%), Gaps = 3/411 (0%)
Query: 78 PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLA 137
P+ TF + CA S +LG +HG +CK G R +V+ AL+DMY KF + A
Sbjct: 107 PDRFTFPFMFKSCASLGS--CYLGKQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVDA 163
Query: 138 TVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197
VFD M + +WN+++ GY R G ++ A +F M + +SWTA+++G+ G +
Sbjct: 164 HKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYV 223
Query: 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257
EA++ FREMQ++G+EPD +++ISVL +CA +G+L +G WIH Y ++ F VCN LI
Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALI 283
Query: 258 DLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317
++YS+CG I A Q+F +M + ++SW+++I G+A +G A+E FN MQ+ KP+G+
Sbjct: 284 EMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGI 343
Query: 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN 377
+F G L+ACSH G+ ++GLRYFD+M++ Y++ P+IEHYGC++D+ +RAG+LE A+ + +
Sbjct: 344 TFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKT 403
Query: 378 MPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437
MPMKP+ + GSLL++CRT G++ +A M +LV+L+P NYVLLAN+YA +GKW+
Sbjct: 404 MPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDV 463
Query: 438 GKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLS 488
++R+ ++ ++K PG S IE+ + + EF++GD S I +L+L +
Sbjct: 464 SRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFT 514
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 193/503 (38%), Positives = 302/503 (60%), Gaps = 16/503 (3%)
Query: 7 ATILPQPFLPHQQNPNQNL------TTTPQISIQTNNSKSTVNPTV-QWTSSISRHCRSG 59
A IL L H + P NL + +I T++P + +T++I+ +G
Sbjct: 50 AAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASING 109
Query: 60 RIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119
+A L + ++ NPN TF +LL C+ G +IH V K GL +
Sbjct: 110 LKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS------GKLIHTHVLKFGLGIDP-Y 162
Query: 120 VGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRD 179
V T L+D+YAK G + A VFD M +S + AMI Y ++G++E+A +FD M RD
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222
Query: 180 AISWTALLNGFVKRGYFEEALECFREMQISGV-EPDYVTIISVLNACANVGTLGIGLWIH 238
+SW +++G+ + G+ +AL F+++ G +PD +T+++ L+AC+ +G L G WIH
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282
Query: 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 298
+V + NVKVC LID+YS+CG +E A VF ++ +V+WN++I G+A++G+
Sbjct: 283 VFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQ 342
Query: 299 EALEYFNSMQK-EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC 357
+AL FN MQ G +P ++F G L AC+HAGL+ +G+R F+ M + Y + P+IEHYGC
Sbjct: 343 DALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGC 402
Query: 358 IVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417
+V L RAG+L+ A ++NM M + V+ S+L +C+ GD +L + + +YL+ L+
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKN 462
Query: 418 DSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIES 477
YVLL+N+YA+VG ++G K+R MK +GI K+PG+S+IEI + +HEF AGDR H +S
Sbjct: 463 SGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKS 522
Query: 478 EHIYSMLELLSFDLKLCGYVPET 500
+ IY+ML +S +K GYVP T
Sbjct: 523 KEIYTMLRKISERIKSHGYVPNT 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/453 (37%), Positives = 274/453 (60%), Gaps = 3/453 (0%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
W IS + R E+ M + +P +T + +LS C+ + L +
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
CK ++ + AL++ YA G MD+A +F +M+ + +W +++ GY+ RG+++
Sbjct: 264 ECK---TEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL 320
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
A FD+MPVRD ISWT +++G+++ G F E+LE FREMQ +G+ PD T++SVL ACA+
Sbjct: 321 ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAH 380
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287
+G+L IG WI Y+ K K++V V N LID+Y +CGC E A++VF M +R +W ++
Sbjct: 381 LGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAM 440
Query: 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347
+VG A NG EA++ F MQ +PD +++ G L+AC+H+G+++ ++F M+ +R
Sbjct: 441 VVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHR 500
Query: 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLM 407
+ P + HYGC+VD+ RAG +++A ++ MPM PN +V G+LL A R D +AE
Sbjct: 501 IEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAA 560
Query: 408 KYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEF 467
K +++L+P + Y LL N+YA +W ++RR + I+K PG S IE+ HEF
Sbjct: 561 KKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEF 620
Query: 468 MAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
+AGD+SH++SE IY LE L+ + Y+P+T
Sbjct: 621 VAGDKSHLQSEEIYMKLEELAQESTFAAYLPDT 653
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/454 (38%), Positives = 276/454 (60%), Gaps = 8/454 (1%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W S I+ ++G EA F M P+ +T +++S CA + + +G +
Sbjct: 218 VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA--IKVGQEV 275
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
HG V K RN++++ A +DMYAK R+ A +FD+M +++ +MI GY
Sbjct: 276 HGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS 335
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
++A MF +M R+ +SW AL+ G+ + G EEAL F ++ V P + + ++L A
Sbjct: 336 TKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKA 395
Query: 225 CANVGTLGIGLWIHRYVLKQDFK------DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
CA++ L +G+ H +VLK FK D++ V N+LID+Y +CGC+E VF++M +
Sbjct: 396 CADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMME 455
Query: 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338
R VSWN++I+GFA NG+ EALE F M + G KPD ++ G L+AC HAG +E+G Y
Sbjct: 456 RDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHY 515
Query: 339 FDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKG 398
F M + + V+P +HY C+VDL RAG LE+A +++E MPM+P+ V+ GSLLAAC+
Sbjct: 516 FSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHR 575
Query: 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSI 458
+I L + + + L++++P YVLL+NMYA +GKW+ +R++M+ G+ K+PG S I
Sbjct: 576 NITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Query: 459 EIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLK 492
+I H FM D+SH + I+S+L++L +++
Sbjct: 636 KIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (884), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 183/456 (40%), Positives = 273/456 (59%), Gaps = 5/456 (1%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
T W I S + L + RM N TF +LL C++ + I
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA--FEETTQI 137
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H + KLG + N+V +L++ YA G LA ++FD + +WN++I GY++ G
Sbjct: 138 HAQITKLGYE-NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
++ A+ +F +M ++AISWT +++G+V+ +EAL+ F EMQ S VEPD V++ + L+A
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 225 CANVGTLGIGLWIHRYVLKQDFK-DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
CA +G L G WIH Y+ K + D+V C LID+Y++CG +E A +VF+ + K+++ +
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGC-VLIDMYAKCGEMEEALEVFKNIKKKSVQA 315
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
W ++I G+A +G EA+ F MQK G KP+ ++FT LTACS+ GL+E+G F M+
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375
Query: 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILA 403
+ Y + P IEHYGCIVDL RAG L++A ++ MP+KPN V+ G+LL ACR +I L
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435
Query: 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSG 463
E + + L+ +DP YV AN++A KWD A + RR MK +G+ K PG S+I +
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495
Query: 464 IHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
HEF+AGDRSH E E I S ++ L+ GYVPE
Sbjct: 496 THEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPE 531
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 178/449 (39%), Positives = 276/449 (61%), Gaps = 6/449 (1%)
Query: 53 SRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLG 112
S + R G EA F M G P+ I+ ++ +S C+ + + G HG V + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRN--ILWGKSCHGYVLRNG 367
Query: 113 LDR-NNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRM 171
+ +N+ AL+DMY K R D A +FD M K+ TWN+++ GY+ G++++A
Sbjct: 368 FESWDNIC--NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWET 425
Query: 172 FDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS-GVEPDYVTIISVLNACANVGT 230
F+ MP ++ +SW +++G V+ FEEA+E F MQ GV D VT++S+ +AC ++G
Sbjct: 426 FETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGA 485
Query: 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVG 290
L + WI+ Y+ K + +V++ TL+D++SRCG E A +F + R + +W + I
Sbjct: 486 LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 545
Query: 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP 350
A+ G A+E F+ M ++G KPDGV+F GALTACSH GL++ G F M K++ VSP
Sbjct: 546 MAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605
Query: 351 RIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410
HYGC+VDL RAG LE+A+ ++E+MPM+PN+V+ SLLAACR +G++ +A + +
Sbjct: 606 EDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKI 665
Query: 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG 470
L P +YVLL+N+YA+ G+W+ K+R +MK +G++K PG SSI+I HEF +G
Sbjct: 666 QVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSG 725
Query: 471 DRSHIESEHIYSMLELLSFDLKLCGYVPE 499
D SH E +I +ML+ +S G+VP+
Sbjct: 726 DESHPEMPNIEAMLDEVSQRASHLGHVPD 754
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/455 (37%), Positives = 270/455 (59%), Gaps = 4/455 (0%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W S I+ + G +A F +M +H+T + +LS CA + L G +
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN--LEFGRQVC 255
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
+ + ++ N + + A+LDMY K G ++ A +FDAM K + TW M+DGY D
Sbjct: 256 SYIEENRVNVN-LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS-GVEPDYVTIISVLNA 224
E+A + + MP +D ++W AL++ + + G EAL F E+Q+ ++ + +T++S L+A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CA VG L +G WIH Y+ K + N V + LI +YS+CG +E +R+VF + KR + W
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
+++I G A++G EA++ F MQ+ KP+GV+FT ACSH GL+++ F M+
Sbjct: 435 SAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMES 494
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
Y + P +HY CIVD+ R+G LE A+ +E MP+ P+ V G+LL AC+ ++ LAE
Sbjct: 495 NYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAE 554
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
L++L+P D +VLL+N+YA +GKW+ ++R+ M+ G++K+PG SSIEI I
Sbjct: 555 MACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMI 614
Query: 465 HEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
HEF++GD +H SE +Y L + LK GY PE
Sbjct: 615 HEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPE 649
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/452 (38%), Positives = 273/452 (60%), Gaps = 8/452 (1%)
Query: 43 NPTVQ-WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG 101
NP V +T+ I SGR A+ + RM + P++ ++L C L +
Sbjct: 89 NPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACD------LKVC 142
Query: 102 AMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMR 161
IH V KLG + VG ++++Y K G + A +FD M + MI+ Y
Sbjct: 143 REIHAQVLKLGFGSSR-SVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSE 201
Query: 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221
G I+ A+ +F ++ ++D + WTA+++G V+ +ALE FREMQ+ V + T + V
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281
L+AC+++G L +G W+H +V Q + + V N LI++YSRCG I AR+VF+ M + +
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341
+S+N++I G A++G EA+ F M GF+P+ V+ L ACSH GL++ GL F+
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381
Query: 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDII 401
MK+++ V P+IEHYGCIVDL R GRLE+A +EN+P++P+ ++LG+LL+AC+ G++
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441
Query: 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIG 461
L E++ K L + + YVLL+N+YA+ GKW + +IR +M+ GI+K+PG S+IE+
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501
Query: 462 SGIHEFMAGDRSHIESEHIYSMLELLSFDLKL 493
+ IHEF+ GD +H E IY L+ L+ L+
Sbjct: 502 NQIHEFLVGDIAHPHKEAIYQRLQELNRILRF 533
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 270/459 (58%), Gaps = 11/459 (2%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W + I R+CR G + EA F M P+ + ++S C G M
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGR-------TGNMR 229
Query: 105 HGLVCKLGLDRNNVMVGT----ALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
+ L N+V + T AL+ MYA G MD+A F M V++ F AM+ GY
Sbjct: 230 YNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYS 289
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
+ G ++ A +FD+ +D + WT +++ +V+ Y +EAL F EM SG++PD V++ S
Sbjct: 290 KCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFS 349
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280
V++ACAN+G L W+H + + + + N LI++Y++CG ++ R VF++M +R
Sbjct: 350 VISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN 409
Query: 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFD 340
+VSW+S+I +++G +AL F M++E +P+ V+F G L CSH+GL+E+G + F
Sbjct: 410 VVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 469
Query: 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDI 400
M Y ++P++EHYGC+VDL+ RA L +AL V+E+MP+ N V+ GSL++ACR G++
Sbjct: 470 SMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGEL 529
Query: 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEI 460
L + K +++L+P D VL++N+YA +W+ IRR M+ + + K+ GLS I+
Sbjct: 530 ELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQ 589
Query: 461 GSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
HEF+ GD+ H +S IY+ L+ + LKL GYVP+
Sbjct: 590 NGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPD 628
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 509 | ||||||
| 359479098 | 518 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.978 | 0.628 | 0.0 | |
| 449492842 | 525 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.978 | 0.948 | 0.623 | 0.0 | |
| 449443656 | 525 | PREDICTED: pentatricopeptide repeat-cont | 0.978 | 0.948 | 0.623 | 0.0 | |
| 356547111 | 521 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.969 | 0.632 | 0.0 | |
| 296084034 | 502 | unnamed protein product [Vitis vinifera] | 0.964 | 0.978 | 0.598 | 0.0 | |
| 145335149 | 500 | protein pigment defective 247 [Arabidops | 0.927 | 0.944 | 0.662 | 0.0 | |
| 224059226 | 439 | predicted protein [Populus trichocarpa] | 0.722 | 0.838 | 0.694 | 0.0 | |
| 347954492 | 494 | chloroplast biogenesis 19, partial [Barb | 0.958 | 0.987 | 0.617 | 0.0 | |
| 297843364 | 500 | PDE247 [Arabidopsis lyrata subsp. lyrata | 0.919 | 0.936 | 0.643 | 0.0 | |
| 347954496 | 489 | chloroplast biogenesis 19, partial [Caps | 0.917 | 0.955 | 0.645 | 0.0 |
| >gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/511 (62%), Positives = 415/511 (81%), Gaps = 4/511 (0%)
Query: 3 SSATATILPQPFLPHQQNPNQ-NLTTTPQIS---IQTNNSKSTVNPTVQWTSSISRHCRS 58
++ ++++ P PNQ + P + + +++ S ++P V WTSSI+ HCR+
Sbjct: 8 ATTPSSLVTHPNSSPNSKPNQPTFPSRPHSTKYHLTRSHTHSPIDPIVSWTSSIALHCRN 67
Query: 59 GRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118
G++ EAA EF+RM + G PNHITF+TLLS C DFP + L G IH V KLGLD NV
Sbjct: 68 GQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENV 127
Query: 119 MVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR 178
MVGTAL+DMY+K G++DLA ++FD M V++S +WN MIDG MR G++ A+ +FD+M R
Sbjct: 128 MVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSER 187
Query: 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIH 238
DAISWT+++ GFVK+G FE+ALE FREMQ++GVEPDYVTIISVL ACAN+G LG+GLWI+
Sbjct: 188 DAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWIN 247
Query: 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 298
R+V+KQDFKDN+K+ N+LID+YSRCGCI ARQVF++M KR+LVSWNS+IVGFA+NG
Sbjct: 248 RFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAE 307
Query: 299 EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCI 358
EALE+FN M+KEGF+PDGVSFTGALTACSH+GL+++GL++FDIMK+ ++SPRIEHYGC+
Sbjct: 308 EALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCL 367
Query: 359 VDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418
VDLYSRAGRLEDALNV+ NMPMKPNEVVLGSLLAACRT GD+ LAERLMKYL ++DPG D
Sbjct: 368 VDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSD 427
Query: 419 SNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESE 478
SNYVLL+N+YAAVG+WDGA K+R+ MK GI KKPG SSIE+ IHEF+AGD++H+E++
Sbjct: 428 SNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQ 487
Query: 479 HIYSMLELLSFDLKLCGYVPETVAGELYEND 509
+IY+ML+ L +L++CGYVPE G+ YE+D
Sbjct: 488 NIYAMLDHLFLELRICGYVPEIEVGKSYEHD 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/510 (62%), Positives = 401/510 (78%), Gaps = 12/510 (2%)
Query: 1 MNSSATATILPQ-----PFLPHQ---QNPNQ----NLTTTPQISIQTNNSKSTVNPTVQW 48
M+S + T P PF P NP + +P +I + + ++V+P V W
Sbjct: 1 MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60
Query: 49 TSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLV 108
TSS++R+CR+G+++EAA EFTRM L G PNHITFITLLS CADFPS+ F + +HG
Sbjct: 61 TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120
Query: 109 CKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESA 168
CK GLD +VMVGTAL+DMY+K ++ A VF + VK+S +WN M++G+MR G+IE A
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180
Query: 169 VRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANV 228
+++FDEMP RDAISWTAL+NG +K GY E+ALECF +MQ SGV DYV+II+VL ACA++
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
Query: 229 GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288
G L +GLW+HR+V+ Q+FKDN+K+ N+LID+YSRCGCIEFARQVF +M KRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
Query: 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV 348
VGFAVNGF E+LE+F +MQKEGFKPDGVS+TGALTACSHAGL+ GL FD MK ++++
Sbjct: 301 VGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
Query: 349 SPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMK 408
+PRIEHYGCIVDLY RAGRLEDALN++E MPMKPNEVVLGSLLAACRT GD+ LAERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
Query: 409 YLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFM 468
+L LDP D+ YVLL+N+YAA+GKWDGA +RRTMK RG+QKKPG SS+EI +HEF+
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
Query: 469 AGDRSHIESEHIYSMLELLSFDLKLCGYVP 498
AGD H ++++IYSML+LL +LK+CGYVP
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVP 510
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/510 (62%), Positives = 401/510 (78%), Gaps = 12/510 (2%)
Query: 1 MNSSATATILPQ-----PFLPHQ---QNPNQ----NLTTTPQISIQTNNSKSTVNPTVQW 48
M+S + T P PF P NP + +P +I + + ++V+P V W
Sbjct: 1 MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60
Query: 49 TSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLV 108
TSS++R+CR+G+++EAA EFTRM L G PNHITFITLLS CADFPS+ F + +HG
Sbjct: 61 TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120
Query: 109 CKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESA 168
CK GLD +VMVGTAL+DMY+K ++ A VF + VK+S +WN M++G+MR G+IE A
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180
Query: 169 VRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANV 228
+++FDEMP RDAISWTAL+NG +K GY E+ALECF +MQ SGV DYV+II+VL ACA++
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240
Query: 229 GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288
G L +GLW+HR+V+ Q+FKDN+K+ N+LID+YSRCGCIEFARQVF +M KRTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300
Query: 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV 348
VGFAVNGF E+LE+F +MQKEGFKPDGVS+TGALTACSHAGL+ GL FD MK ++++
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360
Query: 349 SPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMK 408
+PRIEHYGCIVDLY RAGRLEDALN++E MPMKPNEVVLGSLLAACRT GD+ LAERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420
Query: 409 YLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFM 468
+L LDP D+ YVLL+N+YAA+GKWDGA +RRTMK RG+QKKPG SS+EI +HEF+
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480
Query: 469 AGDRSHIESEHIYSMLELLSFDLKLCGYVP 498
AGD H ++++IYSML+LL +LK+CGYVP
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVP 510
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/514 (63%), Positives = 403/514 (78%), Gaps = 9/514 (1%)
Query: 4 SATATILPQPFLPHQQN--PNQNLTTTPQI------SIQTNNSKSTVNPTVQWTSSISRH 55
+AT T LP P N PNQ +T + ++ +P V WT+SI+ +
Sbjct: 7 NATPTQLPHPPKSPSSNSLPNQTHSTFSNTNTNTNQGLSLRHTTKYNDPIVSWTTSIADY 66
Query: 56 CRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQC-LFLGAMIHGLVCKLGLD 114
C+SG + +AA +F +M PNHITFITLLS CA +PS+ + G IH V KLGLD
Sbjct: 67 CKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLD 126
Query: 115 RNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDE 174
N+VMVGTAL+DMYAK GR++ A + FD M V++ +WN MIDGYMR G E A+++FD
Sbjct: 127 INDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDG 186
Query: 175 MPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234
+PV++AISWTAL+ GFVK+ Y EEALECFREMQ+SGV PDYVT+I+V+ ACAN+GTLG+G
Sbjct: 187 LPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLG 246
Query: 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 294
LW+HR V+ QDF++NVKV N+LID+YSRCGCI+ ARQVF RM +RTLVSWNSIIVGFAVN
Sbjct: 247 LWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVN 306
Query: 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH 354
G EAL YFNSMQ+EGFKPDGVS+TGAL ACSHAGLI +GLR F+ MK++ R+ PRIEH
Sbjct: 307 GLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEH 366
Query: 355 YGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414
YGC+VDLYSRAGRLE+ALNV++NMPMKPNEV+LGSLLAACRT+G+I LAE +M YL++LD
Sbjct: 367 YGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIELD 426
Query: 415 PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSH 474
G DSNYVLL+N+YAAVGKWDGA K+RR MK RGIQKKPG SSIEI S IH+F++GD+SH
Sbjct: 427 SGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSSIHKFVSGDKSH 486
Query: 475 IESEHIYSMLELLSFDLKLCGYVPETVAGELYEN 508
E +HIY+ LE LSF+L+LCGY+P+ E YE+
Sbjct: 487 EEKDHIYAALEFLSFELQLCGYIPDFSGKESYED 520
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/511 (59%), Positives = 399/511 (78%), Gaps = 20/511 (3%)
Query: 3 SSATATILPQPFLPHQQNPNQ-NLTTTPQIS---IQTNNSKSTVNPTVQWTSSISRHCRS 58
++ ++++ P PNQ + P + + +++ S ++P V WTSSI+ HCR+
Sbjct: 8 ATTPSSLVTHPNSSPNSKPNQPTFPSRPHSTKYHLTRSHTHSPIDPIVSWTSSIALHCRN 67
Query: 59 GRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118
G++ EAA EF+RM + G PNHITF+TLLS C DFP + L G IH V KLGLD NV
Sbjct: 68 GQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENV 127
Query: 119 MVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR 178
MVGTAL+DMY+K G++DLA ++FD M V++S +WN MIDG MR G++ A+ +FD+M R
Sbjct: 128 MVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSER 187
Query: 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIH 238
DAISWT+++ GFVK+G FE+ALE FREMQ++GVEPDYVTIISVL ACAN+G LG+GLWI+
Sbjct: 188 DAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWIN 247
Query: 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVG 298
R+V+KQDFKDN+K+ N+LID+YSRCGCI ARQVF++M KR+LVSWNS+IVGFA+NG
Sbjct: 248 RFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAE 307
Query: 299 EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCI 358
EALE+FN M+KEG H+GL+++GL++FDIMK+ ++SPRIEHYGC+
Sbjct: 308 EALEFFNLMRKEG----------------HSGLVDEGLQFFDIMKRTRKISPRIEHYGCL 351
Query: 359 VDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418
VDLYSRAGRLEDALNV+ NMPMKPNEVVLGSLLAACRT GD+ LAERLMKYL ++DPG D
Sbjct: 352 VDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSD 411
Query: 419 SNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESE 478
SNYVLL+N+YAAVG+WDGA K+R+ MK GI KKPG SSIE+ IHEF+AGD++H+E++
Sbjct: 412 SNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQ 471
Query: 479 HIYSMLELLSFDLKLCGYVPETVAGELYEND 509
+IY+ML+ L +L++CGYVPE G+ YE+D
Sbjct: 472 NIYAMLDHLFLELRICGYVPEIEVGKSYEHD 502
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana] gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g05750, chloroplastic; AltName: Full=Protein PIGMENT DEFECTIVE 247; Flags: Precursor gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis thaliana gb|AC007109.6, and contains two DUF17 PF|01535 domains [Arabidopsis thaliana] gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana] gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/474 (66%), Positives = 379/474 (79%), Gaps = 2/474 (0%)
Query: 33 IQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD 92
IQ +N +ST TV WTS I+ R+GR+AEAA EF+ MTL G PNHITFI LLSGC D
Sbjct: 25 IQRHN-QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGD 83
Query: 93 FPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTW 152
F S LG ++HG CKLGLDRN+VMVGTA++ MY+K GR A +VFD M K+S TW
Sbjct: 84 FTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTW 143
Query: 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE 212
N MIDGYMR G +++A +MFD+MP RD ISWTA++NGFVK+GY EEAL FREMQISGV+
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVK 203
Query: 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272
PDYV II+ LNAC N+G L GLW+HRYVL QDFK+NV+V N+LIDLY RCGC+EFARQV
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 273 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI 332
F M KRT+VSWNS+IVGFA NG E+L YF MQ++GFKPD V+FTGALTACSH GL+
Sbjct: 264 FYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLV 323
Query: 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLA 392
E+GLRYF IMK YR+SPRIEHYGC+VDLYSRAGRLEDAL +V++MPMKPNEVV+GSLLA
Sbjct: 324 EEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLA 383
Query: 393 ACRTKG-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451
AC G +I+LAERLMK+L DL+ SNYV+L+NMYAA GKW+GA K+RR MKG G++K
Sbjct: 384 ACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKK 443
Query: 452 KPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGEL 505
+PG SSIEI +H FMAGD +H+E+ +I +LEL+S DL+L G V ET+AG+L
Sbjct: 444 QPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVETLAGDL 497
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa] gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/438 (69%), Positives = 368/438 (84%)
Query: 71 MTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK 130
M L +PNH+TFITLLSGCAD PSQ LG ++H KLGLD N+MVGTAL+DMYAK
Sbjct: 1 MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60
Query: 131 FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGF 190
G ++L+ + FD ++VK+SF+WN MIDG++R G I A+ +FDEMP R ISWT L+NGF
Sbjct: 61 CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGF 120
Query: 191 VKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV 250
VK G FEEALE FR+MQ+S VEPD VTI++VL+ACAN+G LG+GLW+HRY LK+ +DNV
Sbjct: 121 VKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNV 180
Query: 251 KVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310
K+CN+LIDLYSRCG IE ARQVF++M +RTLVSWNSII G A NGF EALE+F+ MQK+
Sbjct: 181 KICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQ 240
Query: 311 GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370
GFKP+ VSFTGALTACSH GL+++GL+YFDIM++++++SPRIEHYGCIVDLYSRAGRLED
Sbjct: 241 GFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLED 300
Query: 371 ALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA 430
A++VV+NMPMKPNEVV+GSLLAACRT+GD+ LAERLM YLV LDPG DSNYVLL+N+YAA
Sbjct: 301 AMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAA 360
Query: 431 VGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFD 490
VG+WDGA K R TMK GIQKKPG SSIEIG IHEF+AGD+SH ++E IYSMLELLSFD
Sbjct: 361 VGRWDGACKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIYSMLELLSFD 420
Query: 491 LKLCGYVPETVAGELYEN 508
LCGYVPE +A ++ N
Sbjct: 421 QALCGYVPEAMAKDMLGN 438
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/497 (61%), Positives = 382/497 (76%), Gaps = 9/497 (1%)
Query: 13 PFLPHQQNPNQNLTTTPQISIQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMT 72
PF+ Q+ + QI ++ST TV WTS I+ R+GR+AEAA EF+ M
Sbjct: 6 PFVTRQK--------SSQIQRILKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMR 57
Query: 73 LHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFG 132
L G PNHITFI LLSGC D S LG ++HG CKLGLDR +VMVGTA+L MY+K G
Sbjct: 58 LAGVEPNHITFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRG 117
Query: 133 RMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVK 192
R A +VFD M K+S TWN MIDGYMR G + +AV++FDEMP RD ISWTA++NGFVK
Sbjct: 118 RFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVK 177
Query: 193 RGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKV 252
+G+ EEAL FREMQISGV+PDYV II+ L AC ++G L GLW+HRYV+ QDFK+N++V
Sbjct: 178 KGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRV 237
Query: 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312
N+LIDLY RCGC+EFAR+VF +M KRT+VSWNS+IVGFA NG E+L YF MQ+EGF
Sbjct: 238 SNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGF 297
Query: 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDAL 372
KPD V+FTGALTACSH GL+E+GLRYF MK+ +R+SPRIEHYGC+VDLYSRAGRLEDAL
Sbjct: 298 KPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDAL 357
Query: 373 NVVENMPMKPNEVVLGSLLAACRTKG-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431
NVV++MPMKPNEVV+GSLLAACR G + +LAERL+K+L DL+ SNYV+L+NMYAA
Sbjct: 358 NVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAAD 417
Query: 432 GKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDL 491
G W+GA K+RR MKG G++K+PG SS+EI H FMAGD +H+E+ +I +LEL+S DL
Sbjct: 418 GIWEGASKMRRKMKGLGLKKQPGFSSVEIDDCTHVFMAGDSAHVETAYIREVLELISSDL 477
Query: 492 KLCGYVPETVAGELYEN 508
+L G V ET+AG+L+ +
Sbjct: 478 RLQGCVFETLAGDLFND 494
|
Source: Barbarea verna Species: Barbarea verna Genus: Barbarea Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata] gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/469 (64%), Positives = 372/469 (79%), Gaps = 1/469 (0%)
Query: 38 SKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQC 97
++ST TV WTS I+ R+GR+AEAA EF+ M L G PNHITFI +LSGC DFPS
Sbjct: 29 NQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSGS 88
Query: 98 LFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMID 157
LG ++HG CKLGLDRN+VMVGTA++ MY+K GR+ A VFD M K+S TWN MID
Sbjct: 89 EALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMID 148
Query: 158 GYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVT 217
GYMR G +++A +MFD+MP RD ISWTA++NGFV +G+ EEAL FREMQISGV+PDYV
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVA 208
Query: 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277
II+ LNAC N+G L GLW+HRYV+ QDFK+NV+V N+LIDLY RCGC+EFARQVF +M
Sbjct: 209 IIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKME 268
Query: 278 KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337
KRT+VSWNS+IVGFA NG E+L YF MQ+E FKPD V+FTGALTACSH GL+E+GLR
Sbjct: 269 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLR 328
Query: 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK 397
YF IM YR+SPRIEHYGC+VDLYSRAGRLEDAL +V++MPMKPNEVV+GSLLAACR
Sbjct: 329 YFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNH 388
Query: 398 G-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456
G + +LAE+LMK+L DL+ SNYV+L+NMYAA GKW+GA K+RR MKG G++K+PG S
Sbjct: 389 GNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFS 448
Query: 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGEL 505
SIEI H FMAGD +H+E+ +I +L+L+S +L+L G V ET+ G+L
Sbjct: 449 SIEIDDCTHVFMAGDSAHVETTNICEVLKLISSNLRLQGCVVETLPGDL 497
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/468 (64%), Positives = 371/468 (79%), Gaps = 1/468 (0%)
Query: 38 SKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQC 97
++ST V WTS I+ R+GR+AEAA EF+ M L G PNHITFI LLSGC DF S
Sbjct: 18 NQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGS 77
Query: 98 LFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMID 157
LG ++HG CKLG DR +VMVGTA+L MY+K R+ A +VFD M K+S TWN MID
Sbjct: 78 EALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMID 137
Query: 158 GYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVT 217
GYMR G +++AV+MFD+MP RD ISWTA++NGFVK+G+ EEAL FREMQISGV+PDYV
Sbjct: 138 GYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVA 197
Query: 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277
II+ LNAC N+G L GLW+HRYV+ QDFK+NVKV N+LIDLY RCGC+EFAR+VF +M
Sbjct: 198 IIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKME 257
Query: 278 KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337
KRT+VSWNS+IVGFA NG E+L YF MQ+EGFKPD V+FTGALTACSH GL+E+GLR
Sbjct: 258 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLR 317
Query: 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK 397
YF MK+ +R+SPRIEHYGC+VDLYSRAGRLE+AL VV++MPMKPNEVV+GSLLAACRT
Sbjct: 318 YFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTH 377
Query: 398 G-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456
G + +LAERLMK+L D++ SNYV+L+NMYAA GKW+GA ++RR MKG G++K+PG S
Sbjct: 378 GNNTVLAERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFS 437
Query: 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGE 504
SIEI H FMAGD +H+E+ I +LEL+S DL+L G ET+AG+
Sbjct: 438 SIEIDDCTHVFMAGDSAHVETADIREVLELVSSDLQLQGCEDETLAGD 485
|
Source: Capsella bursa-pastoris Species: Capsella bursa-pastoris Genus: Capsella Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 509 | ||||||
| TAIR|locus:2198678 | 500 | PDE247 "pigment defective 247" | 0.927 | 0.944 | 0.662 | 5e-170 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.801 | 0.764 | 0.420 | 1e-93 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.907 | 0.731 | 0.394 | 5e-92 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.884 | 0.655 | 0.377 | 2.2e-89 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.874 | 0.638 | 0.384 | 2.3e-87 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.886 | 0.727 | 0.401 | 3.7e-87 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.884 | 0.609 | 0.381 | 8.9e-86 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.687 | 0.588 | 0.430 | 1.2e-85 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.840 | 0.837 | 0.389 | 3.8e-85 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.886 | 0.624 | 0.363 | 1.3e-84 |
| TAIR|locus:2198678 PDE247 "pigment defective 247" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1653 (586.9 bits), Expect = 5.0e-170, P = 5.0e-170
Identities = 314/474 (66%), Positives = 379/474 (79%)
Query: 33 IQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD 92
IQ +N +ST TV WTS I+ R+GR+AEAA EF+ MTL G PNHITFI LLSGC D
Sbjct: 25 IQRHN-QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGD 83
Query: 93 FPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTW 152
F S LG ++HG CKLGLDRN+VMVGTA++ MY+K GR A +VFD M K+S TW
Sbjct: 84 FTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTW 143
Query: 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE 212
N MIDGYMR G +++A +MFD+MP RD ISWTA++NGFVK+GY EEAL FREMQISGV+
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVK 203
Query: 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272
PDYV II+ LNAC N+G L GLW+HRYVL QDFK+NV+V N+LIDLY RCGC+EFARQV
Sbjct: 204 PDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQV 263
Query: 273 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI 332
F M KRT+VSWNS+IVGFA NG E+L YF MQ++GFKPD V+FTGALTACSH GL+
Sbjct: 264 FYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLV 323
Query: 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLA 392
E+GLRYF IMK YR+SPRIEHYGC+VDLYSRAGRLEDAL +V++MPMKPNEVV+GSLLA
Sbjct: 324 EEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLA 383
Query: 393 ACRTKGD-IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451
AC G+ I+LAERLMK+L DL+ SNYV+L+NMYAA GKW+GA K+RR MKG G++K
Sbjct: 384 ACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKK 443
Query: 452 KPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGEL 505
+PG SSIEI +H FMAGD +H+E+ +I +LEL+S DL+L G V ET+AG+L
Sbjct: 444 QPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVETLAGDL 497
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 173/411 (42%), Positives = 275/411 (66%)
Query: 78 PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLA 137
P+ TF + CA S C +LG +HG +CK G R +V+ AL+DMY KF + A
Sbjct: 107 PDRFTFPFMFKSCASLGS-C-YLGKQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVDA 163
Query: 138 TVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197
VFD M + +WN+++ GY R G ++ A +F M + +SWTA+++G+ G +
Sbjct: 164 HKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYV 223
Query: 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257
EA++ FREMQ++G+EPD +++ISVL +CA +G+L +G WIH Y ++ F VCN LI
Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALI 283
Query: 258 DLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317
++YS+CG I A Q+F +M + ++SW+++I G+A +G A+E FN MQ+ KP+G+
Sbjct: 284 EMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGI 343
Query: 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN 377
+F G L+ACSH G+ ++GLRYFD+M++ Y++ P+IEHYGC++D+ +RAG+LE A+ + +
Sbjct: 344 TFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKT 403
Query: 378 MPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437
MPMKP+ + GSLL++CRT G++ +A M +LV+L+P NYVLLAN+YA +GKW+
Sbjct: 404 MPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDV 463
Query: 438 GKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLS 488
++R+ ++ ++K PG S IE+ + + EF++GD S I +L+L +
Sbjct: 464 SRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFT 514
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 187/474 (39%), Positives = 295/474 (62%)
Query: 41 TVNPTV-QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLF 99
T++P + +T++I+ +G +A L + ++ NPN TF +LL C+
Sbjct: 90 TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----- 144
Query: 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGY 159
G +IH V K GL + V T L+D+YAK G + A VFD M +S + AMI Y
Sbjct: 145 -GKLIHTHVLKFGLGIDPY-VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 202
Query: 160 MRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGV-EPDYVTI 218
++G++E+A +FD M RD +SW +++G+ + G+ +AL F+++ G +PD +T+
Sbjct: 203 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 262
Query: 219 ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
++ L+AC+ +G L G WIH +V + NVKVC LID+YS+CG +E A VF +
Sbjct: 263 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 322
Query: 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQK-EGFKPDGVSFTGALTACSHAGLIEDGLR 337
+ +V+WN++I G+A++G+ +AL FN MQ G +P ++F G L AC+HAGL+ +G+R
Sbjct: 323 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 382
Query: 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK 397
F+ M + Y + P+IEHYGC+V L RAG+L+ A ++NM M + V+ S+L +C+
Sbjct: 383 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 442
Query: 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSS 457
GD +L + + +YL+ L+ YVLL+N+YA+VG ++G K+R MK +GI K+PG+S+
Sbjct: 443 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 502
Query: 458 IEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPET--VAGELYEND 509
IEI + +HEF AGDR H +S+ IY+ML +S +K GYVP T V +L E +
Sbjct: 503 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETE 556
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 171/453 (37%), Positives = 276/453 (60%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
W IS + R E+ M + +P +T + +LS C+ + L +H
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLC--KRVHEY 261
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
V + + + + + AL++ YA G MD+A +F +M+ + +W +++ GY+ RG+++
Sbjct: 262 VSECKTEPS-LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL 320
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
A FD+MPVRD ISWT +++G+++ G F E+LE FREMQ +G+ PD T++SVL ACA+
Sbjct: 321 ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAH 380
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287
+G+L IG WI Y+ K K++V V N LID+Y +CGC E A++VF M +R +W ++
Sbjct: 381 LGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAM 440
Query: 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347
+VG A NG EA++ F MQ +PD +++ G L+AC+H+G+++ ++F M+ +R
Sbjct: 441 VVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHR 500
Query: 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLM 407
+ P + HYGC+VD+ RAG +++A ++ MPM PN +V G+LL A R D +AE
Sbjct: 501 IEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAA 560
Query: 408 KYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEF 467
K +++L+P + Y LL N+YA +W ++RR + I+K PG S IE+ HEF
Sbjct: 561 KKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEF 620
Query: 468 MAGDRSHIESEHIYSMLELLSFDLKLCGYVPET 500
+AGD+SH++SE IY LE L+ + Y+P+T
Sbjct: 621 VAGDKSHLQSEEIYMKLEELAQESTFAAYLPDT 653
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 174/453 (38%), Positives = 276/453 (60%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W S I+ ++G EA F M P+ +T +++S CA + + +G +H
Sbjct: 219 VSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA--IKVGQEVH 276
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
G V K RN++++ A +DMYAK R+ A +FD+M +++ +MI GY
Sbjct: 277 GRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAST 336
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
++A MF +M R+ +SW AL+ G+ + G EEAL F ++ V P + + ++L AC
Sbjct: 337 KAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKAC 396
Query: 226 ANVGTLGIGLWIHRYVLKQDFK------DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR 279
A++ L +G+ H +VLK FK D++ V N+LID+Y +CGC+E VF++M +R
Sbjct: 397 ADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456
Query: 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYF 339
VSWN++I+GFA NG+ EALE F M + G KPD ++ G L+AC HAG +E+G YF
Sbjct: 457 DCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYF 516
Query: 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGD 399
M + + V+P +HY C+VDL RAG LE+A +++E MPM+P+ V+ GSLLAAC+ +
Sbjct: 517 SSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRN 576
Query: 400 IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIE 459
I L + + + L++++P YVLL+NMYA +GKW+ +R++M+ G+ K+PG S I+
Sbjct: 577 ITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIK 636
Query: 460 IGSGIHEFMAGDRSHIESEHIYSMLELLSFDLK 492
I H FM D+SH + I+S+L++L +++
Sbjct: 637 IQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 183/456 (40%), Positives = 273/456 (59%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
T W I S + L + RM N TF +LL C++ + I
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA--FEETTQI 137
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H + KLG + N+V +L++ YA G LA ++FD + +WN++I GY++ G
Sbjct: 138 HAQITKLGYE-NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
++ A+ +F +M ++AISWT +++G+V+ +EAL+ F EMQ S VEPD V++ + L+A
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 225 CANVGTLGIGLWIHRYVLKQDFK-DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
CA +G L G WIH Y+ K + D+V C LID+Y++CG +E A +VF+ + K+++ +
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGC-VLIDMYAKCGEMEEALEVFKNIKKKSVQA 315
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
W ++I G+A +G EA+ F MQK G KP+ ++FT LTACS+ GL+E+G F M+
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375
Query: 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILA 403
+ Y + P IEHYGCIVDL RAG L++A ++ MP+KPN V+ G+LL ACR +I L
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435
Query: 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSG 463
E + + L+ +DP YV AN++A KWD A + RR MK +G+ K PG S+I +
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495
Query: 464 IHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
HEF+AGDRSH E E I S ++ L+ GYVPE
Sbjct: 496 THEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPE 531
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 174/456 (38%), Positives = 272/456 (59%)
Query: 46 VQWTSSISRHCRSGRIAEAALE-FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V W S I+ + G + ALE F +M +H+T + +LS CA + L G +
Sbjct: 198 VSWNSMINGFVQKGS-PDKALELFKKMESEDVKASHVTMVGVLSACAKIRN--LEFGRQV 254
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
+ + ++ N + + A+LDMY K G ++ A +FDAM K + TW M+DGY D
Sbjct: 255 CSYIEENRVNVN-LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS-GVEPDYVTIISVLN 223
E+A + + MP +D ++W AL++ + + G EAL F E+Q+ ++ + +T++S L+
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373
Query: 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS 283
ACA VG L +G WIH Y+ K + N V + LI +YS+CG +E +R+VF + KR +
Sbjct: 374 ACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
W+++I G A++G EA++ F MQ+ KP+GV+FT ACSH GL+++ F M+
Sbjct: 434 WSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493
Query: 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILA 403
Y + P +HY CIVD+ R+G LE A+ +E MP+ P+ V G+LL AC+ ++ LA
Sbjct: 494 SNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLA 553
Query: 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSG 463
E L++L+P D +VLL+N+YA +GKW+ ++R+ M+ G++K+PG SSIEI
Sbjct: 554 EMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGM 613
Query: 464 IHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
IHEF++GD +H SE +Y L + LK GY PE
Sbjct: 614 IHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPE 649
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
Identities = 151/351 (43%), Positives = 233/351 (66%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209
+ N+++ Y GD+ SA ++FD+MP +D ++W +++NGF + G EEAL + EM
Sbjct: 157 YVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSK 216
Query: 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFA 269
G++PD TI+S+L+ACA +G L +G +H Y++K N+ N L+DLY+RCG +E A
Sbjct: 217 GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEA 276
Query: 270 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQK-EGFKPDGVSFTGALTACSH 328
+ +F M + VSW S+IVG AVNGF EA+E F M+ EG P ++F G L ACSH
Sbjct: 277 KTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Query: 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLG 388
G++++G YF M++ Y++ PRIEH+GC+VDL +RAG+++ A +++MPM+PN V+
Sbjct: 337 CGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWR 396
Query: 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448
+LL AC GD LAE ++ L+P +YVLL+NMYA+ +W KIR+ M G
Sbjct: 397 TLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDG 456
Query: 449 IQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
++K PG S +E+G+ +HEF+ GD+SH +S+ IY+ L+ ++ L+ GYVP+
Sbjct: 457 VKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507
|
|
| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 169/434 (38%), Positives = 267/434 (61%)
Query: 63 EAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGT 122
E+ + + ++ G P+H TF + + A F S ++H + G + ++ T
Sbjct: 65 ESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPL--RLLHSQFFRSGFESDSFCC-T 121
Query: 123 ALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAIS 182
L+ YAK G + A VFD M + WNAMI GY RRGD+++A+ +FD MP ++ S
Sbjct: 122 TLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTS 181
Query: 183 WTALLNGFVKRGYFEEALECFREMQIS-GVEPDYVTIISVLNACANVGTLGIGLWIHRYV 241
WT +++GF + G + EAL+ F M+ V+P+++T++SVL ACAN+G L IG + Y
Sbjct: 182 WTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYA 241
Query: 242 LKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEA 300
+ F DN+ VCN I++YS+CG I+ A+++F+ + ++R L SWNS+I A +G EA
Sbjct: 242 RENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEA 301
Query: 301 LEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360
L F M +EG KPD V+F G L AC H G++ G F M++++++SP++EHYGC++D
Sbjct: 302 LTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMID 361
Query: 361 LYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420
L R G+L++A ++++ MPMKP+ VV G+LL AC G++ +AE + L L+P N
Sbjct: 362 LLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGN 421
Query: 421 YVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSS-IEIGSGIHEFMAGDRSHIESEH 479
V+++N+YAA KWDG ++R+ MK + K G S +E+G +H+F D+SH S
Sbjct: 422 CVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSYE 481
Query: 480 IYSMLELLSFDLKL 493
IY +LE + +KL
Sbjct: 482 IYQVLEEIFRRMKL 495
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 165/454 (36%), Positives = 272/454 (59%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
V W + I R+CR G + EA F M P+ + ++S C + + I+
Sbjct: 178 VTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN--MRYNRAIY 235
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
+ + + R + + TAL+ MYA G MD+A F M V++ F AM+ GY + G +
Sbjct: 236 EFLIENDV-RMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRL 294
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
+ A +FD+ +D + WT +++ +V+ Y +EAL F EM SG++PD V++ SV++AC
Sbjct: 295 DDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISAC 354
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285
AN+G L W+H + + + + N LI++Y++CG ++ R VF++M +R +VSW+
Sbjct: 355 ANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWS 414
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
S+I +++G +AL F M++E +P+ V+F G L CSH+GL+E+G + F M
Sbjct: 415 SMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDE 474
Query: 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405
Y ++P++EHYGC+VDL+ RA L +AL V+E+MP+ N V+ GSL++ACR G++ L +
Sbjct: 475 YNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKF 534
Query: 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465
K +++L+P D VL++N+YA +W+ IRR M+ + + K+ GLS I+ H
Sbjct: 535 AAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSH 594
Query: 466 EFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
EF+ GD+ H +S IY+ L+ + LKL GYVP+
Sbjct: 595 EFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPD 628
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9MA50 | PPR13_ARATH | No assigned EC number | 0.6624 | 0.9273 | 0.944 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017500001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (518 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 509 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-94 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-80 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-49 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-47 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-39 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 1e-94
Identities = 155/452 (34%), Positives = 245/452 (54%), Gaps = 38/452 (8%)
Query: 46 VQWTSSISRHCRSGRIAEAALE-FTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
V WT+ IS + ++G + + ALE + M +P+ IT ++LS CA L +G +
Sbjct: 355 VSWTAMISGYEKNG-LPDKALETYALMEQDNVSPDEITIASVLSACACLGD--LDVGVKL 411
Query: 105 HGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164
H L + GL V+V AL++MY+K
Sbjct: 412 HELAERKGLISY-VVVANALIEMYSKCKC------------------------------- 439
Query: 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224
I+ A+ +F +P +D ISWT+++ G EAL FR+M ++ ++P+ VT+I+ L+A
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSA 498
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
CA +G L G IH +VL+ + + N L+DLY RCG + +A F H++ +VSW
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSW 557
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
N ++ G+ +G A+E FN M + G PD V+F L ACS +G++ GL YF M++
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
Y ++P ++HY C+VDL RAG+L +A N + MP+ P+ V G+LL ACR + L E
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
+++ +LDP Y+LL N+YA GKWD ++R+TM+ G+ PG S +E+ +
Sbjct: 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737
Query: 465 HEFMAGDRSHIESEHIYSMLELLSFDLKLCGY 496
H F+ D SH + + I ++LE +K G
Sbjct: 738 HAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 264 bits (675), Expect = 2e-80
Identities = 146/455 (32%), Positives = 224/455 (49%), Gaps = 36/455 (7%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
W + I +G EA F M G++ TF+ +L A S G +H
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS--ARAGQQLH 247
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
V K G+ + V AL+DMY+K G DI
Sbjct: 248 CCVLKTGV-VGDTFVSCALIDMYSKCG-------------------------------DI 275
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
E A +FD MP + ++W ++L G+ GY EEAL + EM+ SGV D T ++
Sbjct: 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNT-LIDLYSRCGCIEFARQVFQRMHKRTLVSW 284
+ + L H +++ F ++ V NT L+DLYS+ G +E AR VF RM ++ L+SW
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344
N++I G+ +G +A+E F M EG P+ V+F L+AC ++GL E G F M +
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAE 404
+R+ PR HY C+++L R G L++A ++ P KP + +LL ACR ++ L
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514
Query: 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464
+ L + P +NYV+L N+Y + G+ A K+ T+K +G+ P + IE+
Sbjct: 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD 574
Query: 465 HEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPE 499
H F +GDR H +S IY L+ L ++ GYV E
Sbjct: 575 HSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-49
Identities = 110/384 (28%), Positives = 176/384 (45%), Gaps = 68/384 (17%)
Query: 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGL 107
W + + ++G EA + RM G P+ TF +L C P L G +H
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD--LARGREVHAH 212
Query: 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIES 167
V + G + +V V AL+ MY K G D+ S
Sbjct: 213 VVRFGFE-LDVDVVNALITMYVKCG-------------------------------DVVS 240
Query: 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
A +FD MP RD ISW A+++G+ + G E LE F M+ V+PD +TI SV++AC
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287
+G +G +H YV+K F +V VCN+LI +Y G A +VF RM + VSW ++
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347
I G+ NG +ALE + M+++ PD ++ L+AC+ G ++ G++ ++ ++
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMP---------------------------- 379
+S + ++++YS+ ++ AL V N+P
Sbjct: 421 ISYVVVA-NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 380 -----MKPNEVVLGSLLAACRTKG 398
+KPN V L + L+AC G
Sbjct: 480 QMLLTLKPNSVTLIAALSACARIG 503
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 1e-47
Identities = 101/330 (30%), Positives = 157/330 (47%), Gaps = 40/330 (12%)
Query: 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIH 105
+ W + IS + +G E F M +P+ +T +++S C + L G +H
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL--GREMH 311
Query: 106 GLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165
G V K G +V V +L+ MY G A VF M K
Sbjct: 312 GYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK------------------ 352
Query: 166 ESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225
DA+SWTA+++G+ K G ++ALE + M+ V PD +TI SVL+AC
Sbjct: 353 -------------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285
A +G L +G+ +H ++ V V N LI++YS+C CI+ A +VF + ++ ++SW
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345
SII G +N EAL +F M KP+ V+ AL+AC+ G + G +I +
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGK---EIHAHV 515
Query: 346 YRVSPRIEHY--GCIVDLYSRAGRLEDALN 373
R + + ++DLY R GR+ A N
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-39
Identities = 102/348 (29%), Positives = 160/348 (45%), Gaps = 56/348 (16%)
Query: 145 RVKSSFTW------NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEE 198
R SS NAM+ ++R G++ A +F +MP RD SW L+ G+ K GYF+E
Sbjct: 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDE 170
Query: 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258
AL + M +GV PD T VL C + L G +H +V++ F+ +V V N LI
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 259 LYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVS 318
+Y +CG + AR VF RM +R +SWN++I G+ NG E LE F +M++ PD ++
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 319 FTGALTACS-----------HAGLIEDGL--------------RYFDIMKKIYRVSPRIE 353
T ++AC H +++ G + +V R+E
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 354 -----HYGCIVDLYSRAGRLEDALNVVENMPM---KPNEVVLGSLLAACRTKGDI----- 400
+ ++ Y + G + AL M P+E+ + S+L+AC GD+
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 401 --ILAER--LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444
LAER L+ Y+V V + L MY+ D A ++ +
Sbjct: 411 LHELAERKGLISYVV-----VANA---LIEMYSKCKCIDKALEVFHNI 450
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 4e-22
Identities = 96/386 (24%), Positives = 176/386 (45%), Gaps = 28/386 (7%)
Query: 56 CRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAM-IHGLVCKLGLD 114
C+ R + A F ++ NP TF L+S CA SQ GA+ + LV + GL
Sbjct: 416 CKKQRAVKEAFRFAKLIR---NPTLSTFNMLMSVCAS--SQD-IDGALRVLRLVQEAGL- 468
Query: 115 RNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK----SSFTWNAMIDGYMRRGDIESAVR 170
+ + + T L+ AK G++D VF M + T+ A+IDG R G + A
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 171 MFDEMPVR----DAISWTALLNGFVKRGYFEEALECFREM--QISGVEPDYVTIISVLNA 224
+ M + D + + AL++ + G + A + EM + ++PD++T+ +++ A
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS- 283
CAN G + +++ + + + K +V ++ S+ G +FA ++ M K+ +
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 284 --WNSIIVGFAVN-GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFD 340
+ S +V A + G + +A E +K+G K VS++ + ACS+A + L ++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP---MKPNEVVLGSLLAACRTK 397
+K I ++ P + ++ +L AL V+ M + PN + LL A K
Sbjct: 709 DIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 398 GDIILAERLMKYLVDLDPGVDSNYVL 423
D + L + G+ N V+
Sbjct: 768 DDADVG--LDLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 2e-20
Identities = 90/361 (24%), Positives = 145/361 (40%), Gaps = 96/361 (26%)
Query: 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMI 104
TV W S ++ + G EA + M G + + TF ++ + L +
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-------LALLE 342
Query: 105 HGLVCKLGLDRN----NVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM 160
H GL R +++ TAL+D+Y+K+GRM+ A V
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV-------------------- 382
Query: 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS 220
FD MP ++ ISW AL+ G+ G +A+E F M GV P++VT ++
Sbjct: 383 -----------FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 221 VLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH--- 277
VL+AC YS G E ++FQ M
Sbjct: 432 VLSACR---------------------------------YS--GLSEQGWEIFQSMSENH 456
Query: 278 --KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335
K + + +I G + EA + +++ FKP + LTAC +E G
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
Query: 336 LRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLG-SLLAA 393
R +K+Y + P ++ +Y +++LY+ +GR +A VVE + K G S+ A
Sbjct: 514 -RL--AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK------GLSMHPA 564
Query: 394 C 394
C
Sbjct: 565 C 565
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 7e-18
Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 40/303 (13%)
Query: 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243
+ L G E+AL+ MQ V D +++ C + G + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEY 303
V++ N ++ ++ R G + A VF +M +R L SWN ++ G+A G+ EAL
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 304 FNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR--VSPRIEHYGCIVDL 361
++ M G +PD +F L C G I D R ++ + R ++ ++ +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTC---GGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 362 YSRAGRLEDALNVVENMPMK----------------------------------PNEVVL 387
Y + G + A V + MP + P+ + +
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVD-SNYVLLANMYAAVGKWDGAGKIRRTMKG 446
S+++AC GD L + Y+V VD S L MY ++G W A K+ M+
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
Query: 447 RGI 449
+
Sbjct: 352 KDA 354
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 3/201 (1%)
Query: 194 GYFEEALECFREMQISG-VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKV 252
G EALE F ++ T +++ AC + ++ ++ +V F+ + +
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312
N ++ ++ +CG + AR++F M +R L SW +II G G EA F M ++G
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDAL 372
+ +F L A + G G + + K V I D+YS+ G +EDA
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI-DMYSKCGDIEDAR 279
Query: 373 NVVENMPMKPNEVVLGSLLAA 393
V + MP K V S+LA
Sbjct: 280 CVFDGMPEK-TTVAWNSMLAG 299
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 5e-10
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227
D +++ L++G+ K+G EEAL+ F EM+ G++P+ T +++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 7e-10
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 147 KSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR----DAISWTALLNGFVK 192
T+N +IDGY ++G +E A+++F+EM R + +++ L++G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328
V++N++I G+ G V EAL+ FN M+K G KP+ +++ +
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 8e-07
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214
+++ L++G K G EEALE F+EM+ G+EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEMP 176
T+N +IDG R G ++ AV + DEM
Sbjct: 8 VTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEM 175
T+N++I GY + G +E A+ +F EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 181 ISWTALLNGFVKRGYFEEALECFREMQISGV 211
+++ +L++G+ K G EEALE F+EM+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 150 FTWNAMIDGYMRRGDIESAVRMFDEM 175
T+N +IDG + G +E A+ +F EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD 315
V++N++I G G V EALE F M++ G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312
V++NS+I G+ G + EALE F M+++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEP 213
++ ALL K G + AL EM+ SG++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHKR----TLVSWNSIIVGFA 292
+V NTLID Y + G +E A ++F M KR + +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 117 NVMVGTALLDMYAKFGRMDLATVVFDAMRVK----SSFTWNAMIDGY 159
+V+ L+D Y K G+++ A +F+ M+ + + +T++ +IDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 252 VCNTLIDLYSRCGCIEFARQVFQRMHKR 279
NTLID + G +E A ++F+ M +R
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKER 29
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (91), Expect = 0.002
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 4/143 (2%)
Query: 299 EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCI 358
EALE PD AL A G E+ L ++ ++ +
Sbjct: 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172
Query: 359 V-DLYSRAGRLEDALNVVEN---MPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414
+ L GR E+AL ++E + + L +L G A + ++LD
Sbjct: 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232
Query: 415 PGVDSNYVLLANMYAAVGKWDGA 437
P LA + +G+++ A
Sbjct: 233 PDNAEALYNLALLLLELGRYEEA 255
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 45 TVQWTSSISRHCRSGRIAEAALE-FTRMTLHGTNPNHITFITLLSGCAD 92
V + + I +C+ G++ E AL+ F M G PN T+ L+ G
Sbjct: 3 VVTYNTLIDGYCKKGKV-EEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 509 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.93 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.79 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.73 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.56 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.38 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.32 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.3 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.2 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.99 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.96 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.96 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.81 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.79 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.79 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.76 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.74 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.73 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.71 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.71 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.64 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.62 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.62 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.59 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.59 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.58 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.49 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.39 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.38 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.34 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.27 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.2 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.08 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.97 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.88 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.78 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.73 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.67 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.42 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.38 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.34 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.29 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.28 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.14 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.97 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.92 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.71 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.61 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.58 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.3 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.23 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.95 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.93 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.91 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.86 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.7 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.68 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.67 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.58 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.41 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.27 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.2 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.12 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.96 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.95 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.92 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.88 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.72 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.36 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.58 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.54 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.4 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.26 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.24 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.19 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.05 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.97 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.9 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.67 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.36 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.2 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.2 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.04 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.96 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.93 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.85 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.64 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.56 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.56 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.08 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.87 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.68 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.61 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.53 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 88.42 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.31 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.24 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.02 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.01 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.97 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.94 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.99 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.57 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.4 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.24 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.2 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.65 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.5 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.38 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.37 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.46 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.33 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.67 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 83.48 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.36 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.27 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.03 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 82.81 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.16 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.06 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.82 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.19 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=558.71 Aligned_cols=463 Identities=30% Similarity=0.500 Sum_probs=432.8
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCC-CCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHG-TNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
...++..+|+.+|.+|.+.|++++|+.+|+.|...+ +.||..+|+.++.+|++. ++.+.+.+++..|.+.|+.|+ .
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~-~ 158 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPD-Q 158 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcc-h
Confidence 345567799999999999999999999999998764 789999999999999998 999999999999999999987 8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhc------------------------
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDE------------------------ 174 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------------ 174 (509)
.+|+.|+.+|++.|+++.|.++|++|..||..+|+.++.+|++.|++++|.++|++
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 88888888888888888888888888877777776666666666655555555554
Q ss_pred ----------------------------------------------CCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 175 ----------------------------------------------MPVRDAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 175 ----------------------------------------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
|..+|..+||+++.+|++.|++++|+++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4466889999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 010496 209 SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288 (509)
Q Consensus 209 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 288 (509)
.|+.||..||+.++.+|++.|++++|.+++..|.+.|++++..+|+.|+.+|++.|++++|.++|++|.++|..+||.||
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..++.|+..+|+.++++|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 369 EDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 369 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
++|.+++++|+..|+..+|++|+.+|...|+++.|..+++++.+.+|.+...|..|+.+|++.|++++|.+++++|.+.|
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCcccc
Q 010496 449 IQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGEL 505 (509)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~~~ 505 (509)
+...|+++|+.+++.+|.|..++.+||...+++..++.+..+|++.||.||+....+
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~ 615 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP 615 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc
Confidence 999999999999999999999999999999999999999999999999999886554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=556.21 Aligned_cols=462 Identities=34% Similarity=0.638 Sum_probs=429.4
Q ss_pred cCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 38 SKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 38 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
+..+.||+.+||++|.+|++.|++++|+.+|++|.+.|+.||..||+.++.+|++. ++.+.+.+++..+.+.|+.|+
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~--g~~~~a~~l~~~~~~~g~~~d- 322 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFAVD- 322 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHHhCCccc-
Confidence 34667999999999999999999999999999999999999999999999999999 999999999999999999998
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcC----------------------
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEM---------------------- 175 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------------- 175 (509)
..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|.++|++|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 9999999999999999999999999998887777777777777777777666666655
Q ss_pred ------------------------------------------------CCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010496 176 ------------------------------------------------PVRDAISWTALLNGFVKRGYFEEALECFREMQ 207 (509)
Q Consensus 176 ------------------------------------------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 207 (509)
.++|..+|+++|.+|++.|+.++|+++|++|.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456666666666666667777777777776
Q ss_pred HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH
Q 010496 208 ISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287 (509)
Q Consensus 208 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 287 (509)
. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..+++.|+.+|++.|++++|.++|+.+ .+|..+|+.+
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~l 560 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNIL 560 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHH
Confidence 4 4789999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (509)
|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+..++.|+..+|+.++++|++.|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999778999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 368 LEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 368 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+++|.+++++|+++||..+|++|+.+|...|+.+.+....+++.+..|++...|..|++.|...|+|++|.++.+.|+++
T Consensus 641 ~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCccc
Q 010496 448 GIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGE 504 (509)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~~ 504 (509)
|+.++|+++|+++++.+|.|..++++||...+++..++.+..+|++.||.||+....
T Consensus 721 g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~ 777 (857)
T PLN03077 721 GLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM 777 (857)
T ss_pred CCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc
Confidence 999999999999999999999999999999999999999999999999999987654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-59 Score=476.77 Aligned_cols=459 Identities=17% Similarity=0.252 Sum_probs=408.6
Q ss_pred ccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCC-CCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCC
Q 010496 37 NSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGT-NPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDR 115 (509)
Q Consensus 37 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (509)
......+|+..|..++..+++.|++++|+++|+.|...|+ .|+..+++.++..|.+. +....|..++..|.. |
T Consensus 362 ~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~----p 435 (1060)
T PLN03218 362 GGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRN----P 435 (1060)
T ss_pred cccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCC----C
Confidence 3346778899999999999999999999999999999995 56778888999999998 999999999888864 7
Q ss_pred CchHHHHHHHHHHHhcCCchHHHHHHHhcC----CCChHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHH
Q 010496 116 NNVMVGTALLDMYAKFGRMDLATVVFDAMR----VKSSFTWNAMIDGYMRRGDIESAVRMFDEMP----VRDAISWTALL 187 (509)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li 187 (509)
+ ..+|+.++.+|++.|+++.|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 436 d-~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 436 T-LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred C-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6 9999999999999999999999999997 4699999999999999999999999999997 57999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCcHhHHHHHHHHHHhcCC
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK--QDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 5789999999999999999999
Q ss_pred HHHHHHHHHhccC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 266 IEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 266 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
+++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999985 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG-V 417 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~ 417 (509)
|. +.|+.|+..+|+.||.+|++.|++++|.++|++| +..||..+|+.|+.+|++.|++++|.++|++|.+.+.. +
T Consensus 675 M~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 AR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99 6799999999999999999999999999999998 58899999999999999999999999999999987765 5
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecC----------CCCCCch-HHHHHHHHH
Q 010496 418 DSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG----------DRSHIES-EHIYSMLEL 486 (509)
Q Consensus 418 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~ 486 (509)
..+|..++.+|++.|++++|.+++++|.+.|+.|+..++..++.-....|... ...++.. ..-....-.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 56899999999999999999999999999999998754433321100000000 0001100 011133556
Q ss_pred HHHHHHHcCccCCCCcc
Q 010496 487 LSFDLKLCGYVPETVAG 503 (509)
Q Consensus 487 ~~~~m~~~g~~pd~~~~ 503 (509)
++++|.+.|+.||..+.
T Consensus 834 lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 834 VYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHCCCCCCHHHH
Confidence 77899999999997654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=483.32 Aligned_cols=443 Identities=28% Similarity=0.466 Sum_probs=393.4
Q ss_pred CCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
....||+.+||++|.+|++.|++++|+.+|++|...|+.||..||+.++.+|+.. ++...+.+++..+.+.|+.|+ .
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~g~~~~-~ 222 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI--PDLARGREVHAHVVRFGFELD-V 222 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc--cchhhHHHHHHHHHHcCCCcc-c
Confidence 3567999999999999999999999999999999999999999999999999998 999999999999999999988 8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHH--------------------------------------
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM-------------------------------------- 160 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-------------------------------------- 160 (509)
.+++.|+.+|++.|+++.|.++|++|..+|..+|+++|.+|+
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 999999999999999999999999887666555555555544
Q ss_pred --------------------------------hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 161 --------------------------------RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 161 --------------------------------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
+.|++++|.++|++|..+|..+|+++|.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455566666666666677888999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 010496 209 SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288 (509)
Q Consensus 209 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 288 (509)
.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+.+|++.|++++|.++|++|.++|..+|+.++
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+. +.|+.++..+++.|+++|+++|++
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCH
Confidence 999999999999999999986 599999999999999999999999999999999 679999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHH-h
Q 010496 369 EDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMK-G 446 (509)
Q Consensus 369 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~ 446 (509)
++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.+.. +..+|..++.+|.+.|++++|.++|++|. +
T Consensus 541 ~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 541 NYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 9999999998 789999999999999999999999999999997765 66789999999999999999999999998 6
Q ss_pred CCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCcc
Q 010496 447 RGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAG 503 (509)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~ 503 (509)
.|+.|+... ++.++..++..+ ...++.+.+ +.| +++||...+
T Consensus 619 ~gi~P~~~~----y~~lv~~l~r~G----~~~eA~~~~----~~m---~~~pd~~~~ 660 (857)
T PLN03077 619 YSITPNLKH----YACVVDLLGRAG----KLTEAYNFI----NKM---PITPDPAVW 660 (857)
T ss_pred hCCCCchHH----HHHHHHHHHhCC----CHHHHHHHH----HHC---CCCCCHHHH
Confidence 799887654 344444555533 233333333 233 567776543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=466.62 Aligned_cols=376 Identities=22% Similarity=0.316 Sum_probs=215.8
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHH
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGT 122 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (509)
|+..+++.++.+|++.|..++|+.+|+.|.. ||..+|+.+|.+|++. ++.+.|.+++..|.+.|+.|+ ..+|+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~--g~~e~A~~lf~~M~~~Gl~pD-~~tyn 476 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASS--QDIDGALRVLRLVQEAGLKAD-CKLYT 476 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCC-HHHHH
Confidence 4444555555555555555555555555542 5555555555555555 555555555555555555555 55555
Q ss_pred HHHHHHHhcCCchHHHHHHHhcC----CCChHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHHcC
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMR----VKSSFTWNAMIDGYMRRGDIESAVRMFDEMP----VRDAISWTALLNGFVKRG 194 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~ 194 (509)
.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 55555555555555555555554 3455555555555555555555555555553 245555555555555555
Q ss_pred ChHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 010496 195 YFEEALECFREMQI--SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272 (509)
Q Consensus 195 ~~~~A~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (509)
++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 55555555555544 3455555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 010496 273 FQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV 348 (509)
Q Consensus 273 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 348 (509)
|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. ..++
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~ 715 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKL 715 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCC
Confidence 55554 245555555555555555555555555555555555555555555555555555555555555555 3455
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHH
Q 010496 349 SPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG-VDSNYVLL 424 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l 424 (509)
.|+..+|+.||.+|++.|++++|.++|++| ++.||..+|+.++.+|++.|++++|.+++++|.+.+.. +..+|..+
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 555555555555555555555555555555 35555555555555555555555555555555555544 23345554
Q ss_pred HH
Q 010496 425 AN 426 (509)
Q Consensus 425 ~~ 426 (509)
+.
T Consensus 796 Ig 797 (1060)
T PLN03218 796 TG 797 (1060)
T ss_pred HH
Confidence 43
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=426.05 Aligned_cols=407 Identities=24% Similarity=0.349 Sum_probs=373.8
Q ss_pred CCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCchHHHHHHHhcC----CCChH
Q 010496 76 TNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLG-LDRNNVMVGTALLDMYAKFGRMDLATVVFDAMR----VKSSF 150 (509)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~ 150 (509)
..++..+|+.++.++.+. |+...|.+++..|...+ ..|+ ..+|+.++.+|++.++++.|.+++..|. .+|..
T Consensus 83 ~~~~~~~~~~~i~~l~~~--g~~~~Al~~f~~m~~~~~~~~~-~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVAC--GRHREALELFEILEAGCPFTLP-ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCCceeHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 355677999999999999 99999999999999875 5676 9999999999999999999999999986 47999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 151 TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 151 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
+|+.++.+|++.|++++|.++|++|..+|..+|++++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
.+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.++|+++|+.++.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 010496 311 GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSL 390 (509)
Q Consensus 311 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 390 (509)
|+.||..||+.++.+|++.|++++|.+++..|. +.|+.|+..+|+.|+++|+++|++++|.++|++|. +||..+|+.|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~l 397 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNAL 397 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 999999999999999999999999999999999 67999999999999999999999999999999996 5799999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHh-CCCccCCcccEEEECCEEEEEe
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKG-RGIQKKPGLSSIEIGSGIHEFM 468 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~ 468 (509)
+.+|++.|+.++|.++|++|.+.+.. +..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+... ++.++..|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~----y~~li~~l~ 473 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH----YACMIELLG 473 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc----hHhHHHHHH
Confidence 99999999999999999999998766 566899999999999999999999999986 688887643 455555565
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCc
Q 010496 469 AGDRSHIESEHIYSMLELLSFDLKLCGYVPETVA 502 (509)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~ 502 (509)
..+ ...++.+. +++.+++||...
T Consensus 474 r~G----~~~eA~~~-------~~~~~~~p~~~~ 496 (697)
T PLN03081 474 REG----LLDEAYAM-------IRRAPFKPTVNM 496 (697)
T ss_pred hcC----CHHHHHHH-------HHHCCCCCCHHH
Confidence 533 33333332 334566666544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-26 Score=246.49 Aligned_cols=397 Identities=14% Similarity=0.093 Sum_probs=321.4
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHH
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMV 120 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (509)
.++++.+|+.+...+...|++++|...|+++.+.. +.+...+..+...+... |+.+.|...+..+.+.+ |++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~--~~~~~~ 535 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE--GNPDDAIQRFEKVLTID--PKNLRA 535 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC--cCcHHH
Confidence 34567789999999999999999999999998743 22445566666677777 99999999999998875 666888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcC
Q 010496 121 GTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRG 194 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 194 (509)
+..+...+.+.|+.++|...++++.. .+...+..++..|.+.|++++|..+++.+.. .+...|..+..++...|
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998853 2556777888889999999999999987753 36778889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 195 YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
++++|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++..+...|++++|.++++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988753 4456778888888889999999999999988875 6677888888889999999999999888
Q ss_pred hccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 010496 275 RMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 351 (509)
Q Consensus 275 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 351 (509)
.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|...++++.+ ..+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~ 769 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPND 769 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 8864 35567777888888888999999998888876 34556677788888888888888888888874 33456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMK-PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...|...|++++|.+.|+++ ... ++..++..+...+...|+ .+|+..++++.+..|.++..+..++.++.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 778888888888888888888888886 333 356677888888888888 77888888888888887777888888888
Q ss_pred HcCCchHHHHHHHHHHhCCC
Q 010496 430 AVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~ 449 (509)
..|++++|.++++++.+.+.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 88888888888888887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-26 Score=245.22 Aligned_cols=391 Identities=15% Similarity=0.051 Sum_probs=323.8
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
...+..++..+.+.|++++|+.+++.+... .+++...+..+...+... ++.+.|...+..+.+.. |++...+..+
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~--~~~~~~~~~l 505 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK--GDLAKAREAFEKALSIE--PDFFPAAANL 505 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhC--CCcHHHHHHH
Confidence 445667788888999999999999998874 344667788888888887 89999999999888764 6668888888
Q ss_pred HHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEE 198 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 198 (509)
+..+...|++++|.+.|+++.. .+..++..+...+.+.|++++|...|+.+.. .+...+..++..+...|++++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988863 3667888888889999999999999987743 256677888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 010496 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278 (509)
Q Consensus 199 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (509)
|..+++.+.... +.+...|..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|..+|+++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988753 5567788888999999999999999999988875 56777888889999999999999999988763
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 279 ---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 279 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
.+..++..++..+...|++++|..+++.+...+ +.+...+..+...+...|++++|...++.+.+ ..|+..++
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 739 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNA 739 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHH
Confidence 356788888889999999999999999988874 44667777788888899999999999999884 23555677
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 356 GCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
..++.++.+.|++++|.+.++++ . ...+...+..+...|...|++++|.+.|+++++..|+++..+..++..+.+.|+
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 78888899999999999988887 3 334667888888888899999999999999999999888889999999999999
Q ss_pred chHHHHHHHHHHhC
Q 010496 434 WDGAGKIRRTMKGR 447 (509)
Q Consensus 434 ~~~A~~~~~~m~~~ 447 (509)
.+|+..++++.+.
T Consensus 820 -~~A~~~~~~~~~~ 832 (899)
T TIGR02917 820 -PRALEYAEKALKL 832 (899)
T ss_pred -HHHHHHHHHHHhh
Confidence 8899999988765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=192.27 Aligned_cols=388 Identities=14% Similarity=0.193 Sum_probs=337.1
Q ss_pred ccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCC
Q 010496 35 TNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGL 113 (509)
Q Consensus 35 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (509)
....+....-..+|..+...+-..|++++|+.+++.|++. .| ....|..+..++... |+.+.|.+.+...++.+
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~--~~~~~a~~~~~~alqln- 180 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQ--GDLELAVQCFFEALQLN- 180 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhc--CCCcccHHHHHHHHhcC-
Confidence 3444555566789999999999999999999999999985 55 567788888888888 99999999999988875
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---HhHHHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRD---AISWTALL 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li 187 (509)
|+..-+.+.+...+...|++++|...+.+.... =...|..|...+-..|+...|+..|++...-| ..+|-.|.
T Consensus 181 -P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLG 259 (966)
T KOG4626|consen 181 -PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLG 259 (966)
T ss_pred -cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHH
Confidence 776777788888888999999999999887743 34689999999999999999999999886553 67899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
..|...+.++.|+..|.+.... .|+ ...+..+...|...|.++.|+..|++.++.. |--...|+.|..++-..|++
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccch
Confidence 9999999999999999998874 554 6678888888999999999999999999986 55578999999999999999
Q ss_pred HHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 267 EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 267 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
.+|.+.|.+... ....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.
T Consensus 337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 999999998764 35578899999999999999999999999884 554 457888999999999999999999999
Q ss_pred HHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 343 KKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 343 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
. .+.|+ ...|+.+...|...|+...|.+.+.+. .+.|. ....+.|...|-..|++.+|+..|+.++++.|+.+.
T Consensus 415 l---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 415 L---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred H---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 8 67786 678999999999999999999999886 67775 458899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchH
Q 010496 420 NYVLLANMYAAVGKWDG 436 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~ 436 (509)
+|..++.++.--.+|.+
T Consensus 492 A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 492 AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhHHHHHHHHHhcccc
Confidence 99999888766666554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=186.17 Aligned_cols=415 Identities=16% Similarity=0.170 Sum_probs=315.7
Q ss_pred CCcccCCccccccccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCC--------------------------
Q 010496 22 NQNLTTTPQISIQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHG-------------------------- 75 (509)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------------- 75 (509)
.+....+.+.++.+.....+.-+.. ...|..-..+.|++.+|++.-...-+.+
T Consensus 26 d~~~~s~~s~~v~qq~~~t~~~~~~-~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~ 104 (966)
T KOG4626|consen 26 DQSVSSSGSSSVLQQFNKTHEGSDD-RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAG 104 (966)
T ss_pred ccCcccccchHHHHHhccCCccchh-HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhh
Confidence 4444455555555555444444333 5556777788999999998755433221
Q ss_pred ------CCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCC
Q 010496 76 ------TNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKS 148 (509)
Q Consensus 76 ------~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 148 (509)
+.| -..+|+.+...+... |++..|...+..+++.. |+++..|..+..++...|+.+.|.+.|.+..+-+
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 001 122344444444444 66666666666666653 5556777777777777777777777776665543
Q ss_pred hHHH---HHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 010496 149 SFTW---NAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISV 221 (509)
Q Consensus 149 ~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 221 (509)
+..| ..+...+...|++.+|...+-+..+. -..+|+.|...+-..|+...|+..|++.++ +.|+ ...|..|
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNL 258 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINL 258 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhH
Confidence 3222 23344445566677766666544332 355788888888888999999999998887 4565 6788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChH
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVG 298 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 298 (509)
...|...+.++.|...|.+..... +-...++..+...|...|..+.|+..|++..+. -+..|+.|..++-..|+..
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 999999999999999998888765 566788888888999999999999999988753 3578999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 299 EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 299 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
+|.+.|.+.+... .--....+.|...+...|.++.|..+|.... .+.|. ....+.|...|.+.|++++|+..+++
T Consensus 338 ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 338 EAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 9999999999862 2245678889999999999999999999988 34454 66789999999999999999999988
Q ss_pred C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 378 M-PMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 378 ~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
. +++|+. ..|+.+...|-..|+.+.|.+.+.+++..+|.-..++..|+..|...|+..+|+.-|++..+..
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 7 889975 4999999999999999999999999999999988999999999999999999999999987754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-20 Score=190.78 Aligned_cols=392 Identities=13% Similarity=0.067 Sum_probs=298.0
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.+......+.+.|++++|+..|++.++ +.|+...|..+-.++... ++++.|...+...++. .|++..++..+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNAL--GDWEKVVEDTTAALEL--DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHh--CCHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 455678889999999999999999987 578888888888888888 9999999999998887 4777999999999
Q ss_pred HHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------------
Q 010496 127 MYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------------------------- 178 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------- 178 (509)
+|...|++++|+..|..+... +......++..+........+...++.-...
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999999999877655321 1111111111111111112222222211110
Q ss_pred ----CH---hHHHHHHHH---HHHcCChHHHHHHHHHHHHcC-CCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 010496 179 ----DA---ISWTALLNG---FVKRGYFEEALECFREMQISG-VEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDF 246 (509)
Q Consensus 179 ----~~---~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (509)
+. ..+..+... ....+++++|.+.|+.....+ ..| ....+..+...+...|++++|...+++.++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 00 011111111 122467999999999998764 234 34567778888899999999999999999875
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
|.....|..+..++...|++++|...|+++.+ .+..+|..+...+...|++++|+..|++.++.. +.+...+..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 55677889999999999999999999998763 367889999999999999999999999999863 33566777788
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-V-------VLGSLLAAC 394 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~ 394 (509)
.++.+.|++++|+..+++..+ ..+.+...++.+...+...|++++|++.|++. .+.|+. . .++..+..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 889999999999999999985 33445788999999999999999999999885 444431 1 122222233
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...|++++|.++++++++.+|.+...+..++.++.+.|++++|++.|++..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 446999999999999999999988889999999999999999999999987653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-20 Score=196.75 Aligned_cols=392 Identities=11% Similarity=0.020 Sum_probs=279.9
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcc---cHHHH------------HHhhcCCCccchhHHHHHHHHH
Q 010496 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHI---TFITL------------LSGCADFPSQCLFLGAMIHGLV 108 (509)
Q Consensus 44 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l------------l~~~~~~~~~~~~~a~~~~~~~ 108 (509)
+...+..+...+.+.|++++|+..|++..+. .|+.. .+..+ ...+... ++.+.|...+.++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~--g~~~eA~~~~~~A 377 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDKWESLLKVNRYWLLIQQGDAALKA--NNLAQAERLYQQA 377 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhHHHHHHHhhhHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 4556666666677777777777777776653 23221 11111 1122334 6667777777766
Q ss_pred HHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC------
Q 010496 109 CKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRD------ 179 (509)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 179 (509)
.+.. |++..++..+..++...|++++|++.|+++.. | +...+..+...|. .++.++|..+++.+....
T Consensus 378 l~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 378 RQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 6663 55566666677777777777777777776653 2 3444555555553 345677777766554321
Q ss_pred ------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHH
Q 010496 180 ------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVC 253 (509)
Q Consensus 180 ------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (509)
...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++++++.. +.+...+
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~ 532 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQV 532 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 1234445667778899999999999988853 2346667778888999999999999999988765 5566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCC----h---------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKRT----L---------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
..+...+...++.++|...++.+.... . ..+..+...+...|+.++|+.+++. .+.+...+.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~ 607 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHH
Confidence 666667788899999999998876321 1 1123456678889999999998872 244556677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 010496 321 GALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKG 398 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 398 (509)
.+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.++.. ...|+ ...+..+..++...|
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 7888999999999999999999952 3446888999999999999999999999987 45554 556777888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHHHh-CCCcc
Q 010496 399 DIILAERLMKYLVDLDPGVDS------NYVLLANMYAAVGKWDGAGKIRRTMKG-RGIQK 451 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 451 (509)
++++|.+++++++...|.++. .+..++..+...|++++|++.|++... .|+.|
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 999999999999998766432 566778999999999999999998863 45554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=184.71 Aligned_cols=291 Identities=13% Similarity=0.100 Sum_probs=201.9
Q ss_pred hCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccCCHHHH
Q 010496 161 RRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD---YVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a 234 (509)
..|++++|...|.++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444322 344555566666666666666666666655321111 13455556666666666666
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC--------hhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT--------LVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
..+|+++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666543 4455666666666777777777776666664321 11345566777788888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 010496 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV 385 (509)
Q Consensus 307 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 385 (509)
+.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..++.+|...|++++|...++++ ...|+..
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 88753 224556777888888999999999999998842 21112456788889999999999999999887 5677777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH---cCCchHHHHHHHHHHhCCCccCCcc
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA---VGKWDGAGKIRRTMKGRGIQKKPGL 455 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 455 (509)
.+..++..+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.++++.++|.+
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 778889999999999999999999999988764 55555655553 5689999999999999999998863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-19 Score=192.65 Aligned_cols=389 Identities=13% Similarity=0.020 Sum_probs=262.3
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHh-hcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSG-CADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
..-.+...+.+.|++++|+..|+.+.+.+ +|+...-...... .... ++.+.|...++.+.+.. |+++.++..+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~--g~~~~A~~~L~~ll~~~--P~~~~~~~~LA 188 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP--AQRPEAINQLQRLNADY--PGNTGLRNTLA 188 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC--ccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34455667889999999999999998753 3332211111122 2233 88899999999999885 77789999999
Q ss_pred HHHHhcCCchHHHHHHHhcCCCCh------H-----------------HHH-----------------------------
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKSS------F-----------------TWN----------------------------- 153 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~------~-----------------~~~----------------------------- 153 (509)
..+...|+.++|++.++++..... . .+.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 999999999999999988642100 0 000
Q ss_pred -----HHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHhHH------
Q 010496 154 -----AMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECFREMQISGVEP-DYVTI------ 218 (509)
Q Consensus 154 -----~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~------ 218 (509)
.....+...|++++|+..|++... .+..++..+..++.+.|++++|+..|++..+..... ....+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 113346678999999999987753 378889999999999999999999999988753211 11111
Q ss_pred ------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHH---
Q 010496 219 ------ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNS--- 286 (509)
Q Consensus 219 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~--- 286 (509)
......+.+.|++++|...|+++++.. +.+...+..+..++...|++++|++.|+++.+. +...+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122445678899999999999999886 667778888999999999999999999987632 2222221
Q ss_pred ---------------------------------------HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010496 287 ---------------------------------------IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS 327 (509)
Q Consensus 287 ---------------------------------------l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 327 (509)
+...+...|++++|++.|++.++... -+...+..+...+.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 23345567899999999999888632 24566777888899
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH--------------------------------------------HHHH
Q 010496 328 HAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV--------------------------------------------DLYS 363 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--------------------------------------------~~~~ 363 (509)
+.|++++|...++++.+... .+...+..+. ..+.
T Consensus 507 ~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999998874221 1222222222 2233
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 364 RAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
..|++++|.++++.- .++...+..+...+.+.|++++|+..|+++++..|.++.++..++.+|...|++++|++.+++
T Consensus 585 ~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334444444444321 123334455555666666666666666666666666666666666666666666666666665
Q ss_pred HHh
Q 010496 444 MKG 446 (509)
Q Consensus 444 m~~ 446 (509)
..+
T Consensus 663 ll~ 665 (1157)
T PRK11447 663 LPA 665 (1157)
T ss_pred Hhc
Confidence 544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-20 Score=176.11 Aligned_cols=287 Identities=14% Similarity=0.101 Sum_probs=224.4
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHHc
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-------DAISWTALLNGFVKR 193 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~ 193 (509)
....+...|++++|+..|+++... +..++..+...+...|++++|..+++.+... ....+..++..|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566777888888888877643 3456777777778888888888887766532 124577788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHH
Q 010496 194 GYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN----VKVCNTLIDLYSRCGCIEFA 269 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a 269 (509)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999888753 44677888888888999999999999998887652221 22456677888899999999
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 270 RQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
...|+++.+ .+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999998764 2456778888899999999999999999987633323456788899999999999999999999842
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 010496 347 RVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRT---KGDIILAERLMKYLVDLD 414 (509)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 414 (509)
.|+...+..++..+.+.|++++|..+++++ ...|+...+..++..+.. .|+.+++..+++++.+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 466666788999999999999999999876 677999999988877664 558899999999888744
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-18 Score=174.28 Aligned_cols=326 Identities=11% Similarity=-0.023 Sum_probs=228.9
Q ss_pred HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHH
Q 010496 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGY 159 (509)
Q Consensus 83 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 159 (509)
...++..+.+. |+...|..++....... |++...+..++.+....|++++|+..|+++.. | +...+..+...+
T Consensus 45 ~~~~~~~~~~~--g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRK--DETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhc--CCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33344444555 77777777777777764 55566677777777778888888888877753 2 456677777777
Q ss_pred HhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 010496 160 MRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLW 236 (509)
Q Consensus 160 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 236 (509)
.+.|++++|.+.|+.... .+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 788888888887776643 256677777888888888888888887776543 2222333222 34677788888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHH----HHHHHHHHHH
Q 010496 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGE----ALEYFNSMQK 309 (509)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~ 309 (509)
.++.+++....++......+..++...|++++|...|+++.. .+...+..+...+...|++++ |+..|++...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888877664333444455556777788888888888887653 245667777788888888775 7888888887
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-H
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVV-L 387 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~ 387 (509)
.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...++++ ...|+... +
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 52 234567777888888888888888888888842 2334566777888888888888888888876 45565433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
..+..++...|+.++|...|+++++..|++
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 345667788888888888888888888874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-18 Score=172.33 Aligned_cols=326 Identities=8% Similarity=-0.045 Sum_probs=262.7
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
-.-.++..+.+.|++++|+.+++........+ ...+..+..+.... |+.+.|...++.+.+.. |++...+..+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~--g~~~~A~~~l~~~l~~~--P~~~~a~~~la~ 118 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLAS--SQPDAVLQVVNKLLAVN--VCQPEDVLLVAS 118 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhc--CCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 34456788899999999999999998864332 33344444444555 99999999999999885 888999999999
Q ss_pred HHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHcCChHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPV--R-DAISWTALLNGFVKRGYFEEAL 200 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~ 200 (509)
.+.+.|++++|+..++++.. | +...+..+...+...|++++|...++.+.. | +...+..+ ..+...|++++|.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999999874 3 567888999999999999999999986632 2 44444444 3478899999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHhc
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEF----ARQVFQRM 276 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~ 276 (509)
..++.+......++...+..+..++...|++++|...++++.+.. +.+...+..+..+|...|++++ |...|+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999998876433444555566778899999999999999999886 6678889999999999999986 78999887
Q ss_pred cC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-
Q 010496 277 HK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI- 352 (509)
Q Consensus 277 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 352 (509)
.+ .+...+..+...+...|++++|+..+++..... +.+...+..+..++.+.|++++|...++++.+. .|+.
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~ 352 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTS 352 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccch
Confidence 63 356788999999999999999999999999863 224556777888999999999999999999843 3443
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN 383 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 383 (509)
..+..+..++...|++++|...|++. ...|+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 33444677889999999999999986 44443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-18 Score=174.63 Aligned_cols=391 Identities=11% Similarity=0.011 Sum_probs=299.2
Q ss_pred hHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (509)
..-.+......|+.++|++++.+..... +.+...+..+...+... ++.+.|..++...++. .|.++..+..++.+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~--~P~~~~a~~~la~~ 92 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSL--EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445667778999999999999998622 33444577777777777 9999999999999887 47778889999999
Q ss_pred HHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHH
Q 010496 128 YAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALE 201 (509)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~ 201 (509)
+...|++++|+..++++.. | +.. +..+..++...|+.++|+..++++... +...+..+..++...+..++|++
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999864 3 556 888889999999999999999987643 66777788889999999999999
Q ss_pred HHHHHHHcCCCCCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHHHc-CCCCcHh-HH----HHHHHHHH
Q 010496 202 CFREMQISGVEPDY------VTIISVLNACA-----NVGTL---GIGLWIHRYVLKQ-DFKDNVK-VC----NTLIDLYS 261 (509)
Q Consensus 202 ~~~~m~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~ 261 (509)
.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9887654 3331 11122222222 22234 7788888888865 1122221 11 11133456
Q ss_pred hcCCHHHHHHHHHhccCCC---h-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHH
Q 010496 262 RCGCIEFARQVFQRMHKRT---L-VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP---DGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~ 334 (509)
..|++++|+..|+.+.+.+ + .....+..+|...|++++|+..|+++....... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 7799999999999998642 2 122335778999999999999999988653211 13445666778899999999
Q ss_pred HHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 010496 335 GLRYFDIMKKIYR----------VSPR---IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGD 399 (509)
Q Consensus 335 a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 399 (509)
|...++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..++..+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999985321 1122 234567788899999999999999997 4445 56788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 400 IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+++|++.++++++..|++...+..++..+...|++++|..+++++++.
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-17 Score=167.55 Aligned_cols=368 Identities=9% Similarity=-0.051 Sum_probs=281.8
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
.+...+..+...+...|++++|+.+|++..+. .|+ ...+..+...+... ++.+.|...++.+.+. .|++.. +
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~--g~~~eA~~~l~~~l~~--~P~~~~-~ 119 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADA--GQYDEALVKAKQLVSG--APDKAN-L 119 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHh--CCCCHH-H
Confidence 34446899999999999999999999999884 454 45555666667777 9999999999999988 477788 9
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh--------HHHHHHHHH
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAI--------SWTALLNGF 190 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~ 190 (509)
..+..++...|+.++|+..++++.. | +...+..+..++...+..++|+..++.... ++. ....+++..
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999874 3 556677788888899999999999998776 211 222233333
Q ss_pred HH-----cCCh---HHHHHHHHHHHHc-CCCCCHh-HHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 010496 191 VK-----RGYF---EEALECFREMQIS-GVEPDYV-TII----SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL 256 (509)
Q Consensus 191 ~~-----~~~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (509)
.. .+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+........+
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 22 2234 7788899988864 1233321 111 1134456779999999999999987632112223335
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH--
Q 010496 257 IDLYSRCGCIEFARQVFQRMHKRT-------LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF-----------KPDG-- 316 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~-- 316 (509)
..+|...|++++|+..|+++.+.+ ...+..+..++...|++++|...++.+..... .|+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 789999999999999999986432 23455667788999999999999999987521 1332
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 010496 317 -VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAA 393 (509)
Q Consensus 317 -~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 393 (509)
..+..+...+...|+.++|+..++++.. ..+.+...+..+...+...|++++|++.+++. ...|+ ...+..++..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 2445667788899999999999999985 33456888999999999999999999999987 56776 5577777778
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
+...|++++|+.+++++++..|+++.+
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999998743
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-16 Score=160.71 Aligned_cols=393 Identities=10% Similarity=0.038 Sum_probs=269.9
Q ss_pred CCCCCccchHHH-HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcC-CCccchhHHHHHHHHHHHhCCCCCc
Q 010496 40 STVNPTVQWTSS-ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD-FPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 40 ~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
.+.|........ ...|.+.|++++|+.++.++.+.+.. +..-...+-..+.. . ++ +.+..++.. .+. .+
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l--~~-~~a~al~~~----~lk-~d 246 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQ--LD-DRLLALQSQ----GIF-TD 246 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhh--CH-HHHHHHhch----hcc-cC
Confidence 344444444444 88999999999999999999997532 33334445455544 2 33 555555332 222 45
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCC-----CChHHH------------------------------HHHHHHHHhC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRV-----KSSFTW------------------------------NAMIDGYMRR 162 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~------------------------------~~l~~~~~~~ 162 (509)
+.++..++..|.+.|+.++|.++++++.. +...+| -.++..+.+.
T Consensus 247 ~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 247 PQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999862 111111 1124445555
Q ss_pred CCHHHHHHHHh---------------------------------------------------------------cCCC-C
Q 010496 163 GDIESAVRMFD---------------------------------------------------------------EMPV-R 178 (509)
Q Consensus 163 ~~~~~A~~~~~---------------------------------------------------------------~~~~-~ 178 (509)
++++.++++.. .... +
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~ 406 (987)
T PRK09782 327 GQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ 406 (987)
T ss_pred cHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC
Confidence 55555555433 2211 0
Q ss_pred -----CHhHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHc-CC-CC--CHhHHHHHHHH
Q 010496 179 -----DAISWTALLNGFVKRGY---FEEALEC----------------------FREMQIS-GV-EP--DYVTIISVLNA 224 (509)
Q Consensus 179 -----~~~~~~~li~~~~~~~~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~l~~~ 224 (509)
+.....-++..|.+.+. ..++..+ ....... +. ++ +...|..+..+
T Consensus 407 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~ 486 (987)
T PRK09782 407 GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKC 486 (987)
T ss_pred cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHH
Confidence 11222344444444443 2222222 1111110 11 23 55667777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHH
Q 010496 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
+.. ++.++|...+.+..... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|..
T Consensus 487 l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 487 YRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred HHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 766 78888999888877664 4544444455666789999999999988763 344556677788889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 010496 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMK 381 (509)
Q Consensus 303 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 381 (509)
.+++..+.. +.+...+..+...+...|++++|...+++..+ ..|+...+..+...+.+.|++++|+..+++. ...
T Consensus 564 ~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 564 WLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999998863 22333333344445566999999999999983 3467888889999999999999999999887 566
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 382 PN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 382 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
|+ ...+..+..++...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 64 55778888889999999999999999999999999999999999999999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-16 Score=159.69 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=159.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH--HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI--IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
+...|..+..++.. ++.++|...+.+.....+..+..+ ...+...|++++|...|+++... +|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 67788888888887 889999998877664333334444 44456899999999999998764 45555566777888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
.+.|+.++|...++...+. . +.....+..+...+.+.|++++|...+++. ...|+...+..+..++.+.|++++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999842 2 333444444445555679999999999887 678888899999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.++++++..|+++..+..++.++...|++++|+.++++..+..
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999988753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-16 Score=159.00 Aligned_cols=368 Identities=13% Similarity=0.070 Sum_probs=268.2
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
...|+...|..+..+|.+.|++++|+..++..++. .| +...|..+-.++... |+++.|...+..+...+...+ .
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l--g~~~eA~~~~~~~~~~~~~~~-~ 229 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL--GKYADALLDLTASCIIDGFRN-E 229 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcc-H
Confidence 34577888999999999999999999999999985 45 455677777778888 999999887776655532111 2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC-----------------------------CCh---HHHHHHHHH---HHhCC
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRV-----------------------------KSS---FTWNAMIDG---YMRRG 163 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------------~~~---~~~~~l~~~---~~~~~ 163 (509)
.....+...+ .......+...++.-.. .+. ..+..+... ....+
T Consensus 230 ~~~~~~~~~l-~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~ 308 (615)
T TIGR00990 230 QSAQAVERLL-KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADE 308 (615)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhh
Confidence 1111111111 11111122222211110 000 001111111 12246
Q ss_pred CHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHH
Q 010496 164 DIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLW 236 (509)
Q Consensus 164 ~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 236 (509)
++++|.+.|+..... ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|..
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 789999999876532 4567888899999999999999999999885 454 6678888899999999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010496 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK 313 (509)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 313 (509)
.++++++.. +.+..++..+..++...|++++|...|++..+. +...+..+..++.+.|++++|+..|++.+.. .+
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FP 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC
Confidence 999999886 667889999999999999999999999998743 5567888888999999999999999999875 23
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CC---CH-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHH
Q 010496 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV-SP---RI-EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVV 386 (509)
Q Consensus 314 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~ 386 (509)
-+...+..+..++...|++++|+..|++..+...- .+ +. ..++.....+...|++++|.+++++. ...|+ ...
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a 544 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 35678888899999999999999999998842111 01 11 11222233344579999999999885 56665 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
+..+...+...|++++|.+.|+++.++.+..
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 8889999999999999999999999987653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-15 Score=154.72 Aligned_cols=394 Identities=12% Similarity=0.000 Sum_probs=283.9
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcc-cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHI-TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
+-...+-...+.|+++.|+..|++..+. .|+.. ....++..+... |+.+.|...++... ...|........++
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~--~p~n~~~~~llalA 109 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ--SSMNISSRGLASAA 109 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc--cCCCCCHHHHHHHH
Confidence 3344455568899999999999999874 56642 222666677777 99999999988887 21222234444447
Q ss_pred HHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHH--HcCChHHHH
Q 010496 126 DMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFV--KRGYFEEAL 200 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~ 200 (509)
..|...|++++|+++|+++.+. ++..+..++..+...++.++|++.++.+.+.++.....+..++. ..++..+|+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHH
Confidence 7899999999999999999753 56677788888999999999999999998765443333444444 456666699
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH-------------------------------------------
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWI------------------------------------------- 237 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------- 237 (509)
+.++++.+.. +-+...+..+..++.+.|-...|.++
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999998863 33455555555555555544333332
Q ss_pred -----HHHHHHc--CCCCcHhH----HHHHHHHHHhcCCHHHHHHHHHhccCC----ChhhHHHHHHHHHhCCChHHHHH
Q 010496 238 -----HRYVLKQ--DFKDNVKV----CNTLIDLYSRCGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 238 -----~~~~~~~--~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
++.+... ..|+.... ..-.+-++...|++.++++.|+.+... ...+-..+..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 2222221 11222111 123345667788899999999998843 33466778889999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC----------CCC---HHHHHHHHHHHHh
Q 010496 303 YFNSMQKEG-----FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV----------SPR---IEHYGCIVDLYSR 364 (509)
Q Consensus 303 ~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~li~~~~~ 364 (509)
+|+.+.... ..++......|.-++...+++++|..+++.+.+.... .|+ ...+..++..+.-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999987643 1223444577888999999999999999999852210 122 2334556777888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 365 AGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.|+..+|++.++++ ...| |......+...+...|.+.+|++.++.+....|++..+....+.++...|+|.+|..+.+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999988 4445 777888889999999999999999999999999988889999999999999999999988
Q ss_pred HHHhC
Q 010496 443 TMKGR 447 (509)
Q Consensus 443 ~m~~~ 447 (509)
.+.+.
T Consensus 509 ~l~~~ 513 (822)
T PRK14574 509 DVISR 513 (822)
T ss_pred HHHhh
Confidence 87664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-15 Score=149.96 Aligned_cols=347 Identities=12% Similarity=0.047 Sum_probs=275.5
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCCh-HHHHHH--HHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSS-FTWNAM--IDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l--~~~~~~~~~~~~A~~~~ 172 (509)
|+...|...+.+..+.. |.+......++..+...|+.++|+..+++...++. ..+..+ ...+...|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998885 65432333888899999999999999999997633 333334 55788899999999999
Q ss_pred hcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 173 DEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 173 ~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
+.+... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. |.+
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n 202 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTS 202 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCC
Confidence 988643 6777888889999999999999999999885 6676666555555555677767999999999986 777
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccC---------------------------------------------------
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHK--------------------------------------------------- 278 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------------------------------------- 278 (509)
...+..+..++.+.|-...|.++..+-..
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 88888888888888877666666553321
Q ss_pred CCh---h----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----
Q 010496 279 RTL---V----SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR---- 347 (509)
Q Consensus 279 ~~~---~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---- 347 (509)
+++ . ..--.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|+.+++.+....+
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 011 0 11123446777899999999999999988765667888999999999999999999999975332
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC-C-------------C--CH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPM-K-------------P--NE-VVLGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-------------p--~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
..++......|.-+|...+++++|..+++.+.- . | |- ..+..++..+...|+..+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223454467889999999999999999998831 1 2 22 24445567788999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 411 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
....|.+......++..+...|++.+|.+.++.....
T Consensus 443 ~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 443 SSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-15 Score=143.01 Aligned_cols=402 Identities=13% Similarity=0.058 Sum_probs=260.8
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCC--CCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTN--PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
...-|++..+.|..-|.-.|+++.+..+...+...... .-..+|-.+.+++-.. |+++.|...|-+..+.. +++
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~--Gd~ekA~~yY~~s~k~~--~d~ 340 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ--GDFEKAFKYYMESLKAD--NDN 340 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHccC--CCC
Confidence 44567778888888888888888888888888765411 1234566677777666 88888888887766664 554
Q ss_pred -hHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCC----CHHHHHHHHhcCCCC---CHhHHHHH
Q 010496 118 -VMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRG----DIESAVRMFDEMPVR---DAISWTAL 186 (509)
Q Consensus 118 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~l 186 (509)
...+..|..+|.+.|+.+.+...|+.+.. | +..+...|...|+..+ ..+.|..++.....+ |..+|-.+
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 56667788888888888888888888763 2 4455555556665553 345555555554433 44455555
Q ss_pred HHHHHHcCChHHHHHHHHHH----HHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCc------HhHH
Q 010496 187 LNGFVKRGYFEEALECFREM----QISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ---DFKDN------VKVC 253 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~ 253 (509)
...+.....+.. +.+|... ...+..+.....+.+.......|.+..|...|...... ...++ ..+-
T Consensus 421 aql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 444444433322 4444332 22333344455555555555555555555555554433 01111 1122
Q ss_pred HHHHHHHHhcCCHH----------------------------------HHHHHHHhcc---CCChhhHHHHHHHHHhCCC
Q 010496 254 NTLIDLYSRCGCIE----------------------------------FARQVFQRMH---KRTLVSWNSIIVGFAVNGF 296 (509)
Q Consensus 254 ~~l~~~~~~~g~~~----------------------------------~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 296 (509)
..+..++-..++++ +|...+.... +.++..+..+...+.....
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 22333333344444 4444444433 2355666666667777777
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 010496 297 VGEALEYFNSMQKE-GFKPDGVSFTGALTACSH------------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS 363 (509)
Q Consensus 297 ~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (509)
+..|.+-|..+... ...+|..+...|.+.|.+ .+..++|+++|.++.+ ..+.|...-+.+.-.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 77777766655543 123566666666665542 2346788888888884 34557778888888999
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-CCchHHHHHHHHHHcCCchHHHH
Q 010496 364 RAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP-G-VDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
..|++.+|..+|.... ......+|..+..+|...|++..|+++|+...+... . ++.+...|++++.+.|++.+|.+
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999998873 223456888899999999999999999999887543 3 56679999999999999999999
Q ss_pred HHHHHHhCC
Q 010496 440 IRRTMKGRG 448 (509)
Q Consensus 440 ~~~~m~~~~ 448 (509)
.+.......
T Consensus 738 ~ll~a~~~~ 746 (1018)
T KOG2002|consen 738 ALLKARHLA 746 (1018)
T ss_pred HHHHHHHhC
Confidence 988876654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9e-15 Score=142.35 Aligned_cols=400 Identities=13% Similarity=0.037 Sum_probs=260.4
Q ss_pred CCccchHHHHHHHHcCC---ChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCC-CCch
Q 010496 43 NPTVQWTSSISRHCRSG---RIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLD-RNNV 118 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 118 (509)
-++.++-.|.-.-.... .+..++.++...-... .-++...+.|-..+... ++...+..+...+...... +--.
T Consensus 231 ~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK--~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 231 TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFK--KDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhc--ccHHHHHHHHHHHHHhhhhhHHHH
Confidence 35555554444433333 3566777776665532 23455566666666666 9999999999888877522 2224
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCC--C--hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHH
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRVK--S--SFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFV 191 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 191 (509)
..|..+.++|-..|++++|.+.|-+..+. + ...+--+...|.+.|+++.+...|+.+... +..+...|...|.
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 56889999999999999999999988753 2 334556889999999999999999988643 6778888888888
Q ss_pred HcC----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCcHhHHHHHHHHHHhc
Q 010496 192 KRG----YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL----KQDFKDNVKVCNTLIDLYSRC 263 (509)
Q Consensus 192 ~~~----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 263 (509)
..+ ..+.|..++.+..+.- +.|...|..+...+...+-+.. +.+|..+. ..+.++.....|.+...+...
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 775 4577777777777653 4467788777777766554444 66666544 455567889999999999999
Q ss_pred CCHHHHHHHHHhccCC-------Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 010496 264 GCIEFARQVFQRMHKR-------TL------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV-SFTGALTACSHA 329 (509)
Q Consensus 264 g~~~~a~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~ 329 (509)
|++.+|...|...... |. .+--.+...+-..++++.|.+.|..+++. .|.-. .|..++......
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhc
Confidence 9999999999887532 22 11222344455566777777777777764 33332 333333222233
Q ss_pred CCHHHHHHHHHHhHHhcCC----------------------------------CCCHHHHHHHHHHHHh-----------
Q 010496 330 GLIEDGLRYFDIMKKIYRV----------------------------------SPRIEHYGCIVDLYSR----------- 364 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~----------------------------------~~~~~~~~~li~~~~~----------- 364 (509)
++..+|...++........ .+|..+.-.|...|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 4455555555544431111 1233333333332221
Q ss_pred -cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010496 365 -AGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 365 -~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
.+..++|+++|.+. ...| |.+.-+.+...++..|++.+|..+|.+..+...+...+|..++.+|...|+|-.|+++|
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 12345666666554 4444 55566666666777777777777777777766666667777777777777777777777
Q ss_pred HHHHhCCC
Q 010496 442 RTMKGRGI 449 (509)
Q Consensus 442 ~~m~~~~~ 449 (509)
+...++..
T Consensus 704 e~~lkkf~ 711 (1018)
T KOG2002|consen 704 ENCLKKFY 711 (1018)
T ss_pred HHHHHHhc
Confidence 77666544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-12 Score=116.04 Aligned_cols=406 Identities=14% Similarity=0.107 Sum_probs=274.7
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHH-HHHHHHHHhC----------
Q 010496 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGA-MIHGLVCKLG---------- 112 (509)
Q Consensus 44 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~-~~~~~~~~~~---------- 112 (509)
.|.+=|+|+.. ..+|....+.-+|++|.+.|+..+...-..|+....-....+...+. +.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34455665554 56788999999999999999887777666666543222112222111 1111111111
Q ss_pred --------CCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC----ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH
Q 010496 113 --------LDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK----SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDA 180 (509)
Q Consensus 113 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 180 (509)
..|..+.++..+|.++|+.-..+.|.+++++.... +..+||.+|.+-.-..+-+-.-++...-..||.
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCch
Confidence 23556888999999999999999999999887643 677888888765544443333333444456799
Q ss_pred hHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH-HHHHHHHHHH----cCC----C
Q 010496 181 ISWTALLNGFVKRGYFEE----ALECFREMQISGVEPDYVTIISVLNACANVGTLGI-GLWIHRYVLK----QDF----K 247 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~ 247 (509)
.|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..+..++.. ..+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999997764 56678888999999999999999998888888754 3334444332 222 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG 316 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 316 (509)
.+...|...+..|.+..+.+-|..+-.-+... ...-|..+..+.|+....+.....|+.|+-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 34555677778888888888887776554421 1234666777888888999999999999988888999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-Ch--------HH-----HHHHHHh-----
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG-RL--------ED-----ALNVVEN----- 377 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~~~~----- 377 (509)
.+...++++..-.|.++-.-++|..+. .+|..-+...-..+...+++.. .. .. |..+++.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999998888888888 5665555444444555555443 11 10 1111111
Q ss_pred --C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHH---HHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 378 --M-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYV---LLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 378 --~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
+ ...-.....+..+-.+.+.|..++|.+++.-..+.+-. .....+ -+...-.+.+...+|..+++-|...+.
T Consensus 513 ~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 513 IRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1 12334556667777788999999999999998765433 112234 455556677889999999999987765
Q ss_pred cc
Q 010496 450 QK 451 (509)
Q Consensus 450 ~~ 451 (509)
..
T Consensus 593 ~~ 594 (625)
T KOG4422|consen 593 PI 594 (625)
T ss_pred hh
Confidence 43
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-13 Score=122.32 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=169.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHH
Q 010496 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
....|++++|...|++.+..+-......|| +.-.+...|++++|++.|-++. ..+..+.-.+.+.|-...+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 345688999999999998776444444444 4556778899999999998775 457777778888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
+++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.--+ -++-+..+...|...|....-+++++.+|++. -+
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 999888775 566788889999999999999999887765542 34558889999999999999999999999997 57
Q ss_pred CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 381 KPNEVVLGSLLAAC-RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 381 ~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
.|+..-|..++..| .+.|++.+|.++|+..-+..|.+...+..|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 89999999988765 578999999999999999999999999999998887764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-13 Score=123.56 Aligned_cols=384 Identities=16% Similarity=0.113 Sum_probs=263.3
Q ss_pred hHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
+-+...-|.++|++++|++.|.+.++ ..|| +..|...-.+|... |+++...+--...++.+ |+-..++..-..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~l--gd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESL--GDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHH--hhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 44456678899999999999999998 5788 66677777777777 99999888877777664 776778888888
Q ss_pred HHHhcCCchHHHHHH------HhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CH-----------------
Q 010496 127 MYAKFGRMDLATVVF------DAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DA----------------- 180 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----------------- 180 (509)
++-..|++++|+.=. +.....+. ..++.-..+.--..++.+-|..-..| +.
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~---~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASI---EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 999999998875422 21111111 11111111111112233333311111 11
Q ss_pred ------hHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcC-CCC-----C------HhHHHHHHHHHHccCCHHHHHHH
Q 010496 181 ------ISWTALLNGFVK--RG---YFEEALECFREMQISG-VEP-----D------YVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 181 ------~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~~-~~p-----~------~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
.+...+..++.. .+ .+..|...+.+-.... ..+ | ..+.......+.-.|+.-.+..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 111111111111 11 2333333333221110 011 1 11122222234556888899999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP 314 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 314 (509)
|+..+... +.+...|-.+..+|....+.++....|.+.. ..++.+|..-.+.+.-.+++++|..=|++.+.. .|
T Consensus 349 ~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~p 425 (606)
T KOG0547|consen 349 FDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DP 425 (606)
T ss_pred HHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Ch
Confidence 99999987 4444557778888999999999999999876 347789999999999999999999999999985 33
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--------
Q 010496 315 -DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-------- 384 (509)
Q Consensus 315 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------- 384 (509)
+...|..+..+..+.+.+++++..|++..+ .++-.+..|+.....+...++++.|.+.|+.. .+.|+.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 455666666667788999999999999996 55667889999999999999999999999886 455541
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 -VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+--.++..- =.+++..|..+++++++.+|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 504 plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 504 PLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1222222222 238999999999999999999999999999999999999999999997654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=145.65 Aligned_cols=258 Identities=17% Similarity=0.131 Sum_probs=111.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC 263 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (509)
.+...+.+.|++++|++++........+|+ ...|..+...+...++++.|.+.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 456778888999999999966554432344 4444555666777889999999999998876 4467777778877 788
Q ss_pred CCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010496 264 GCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLRYFD 340 (509)
Q Consensus 264 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 340 (509)
+++++|.+++...-+ ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+..++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998877643 456677788888999999999999999987643 34566778888888999999999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
++.+. .+.+......++..+...|+.+++.++++... ...|...+..+..++...|+.++|...++++.+..|+++
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99952 23357788889999999999999888887762 234556788899999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 419 SNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.....++.++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-13 Score=130.66 Aligned_cols=318 Identities=15% Similarity=0.157 Sum_probs=245.1
Q ss_pred HHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHh---cCCCCCHhHHHHHHHHHHHcCChHH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEE 198 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~ 198 (509)
++.....|++++|..++.++... ....|.+|...|-..|+.+++...+- .+.+.|...|..+.....+.|++++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344459999999999888743 66788899999999999999888764 4455688889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh----HHHHHHHHHHhcCCHHHHHHHHH
Q 010496 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK----VCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 199 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
|.-+|.+.++.. +++...+---...|-+.|+...|...|.++.....+.+.. .-...++.+...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998864 5555555566778889999999999999998876333322 22334666777777788888888
Q ss_pred hccC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHH
Q 010496 275 RMHK-----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG---------------------------FKPDGVSFTGA 322 (509)
Q Consensus 275 ~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------------------------~~p~~~~~~~l 322 (509)
.... -+...++.++..|.+...++.|......+.... ..++... ..+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 7764 244678888999999999999998888877621 1222222 122
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHhc
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRLEDALNVVENMPMK---PNEVVLGSLLAACRTK 397 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~ 397 (509)
.-++.+.+..+....+...+. .....| +...|.-+.++|.+.|++.+|+.++..+... .+...|-.+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 334445555555555555555 344333 5778999999999999999999999998322 2567999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
|.+++|.+.|++++...|.+..+-..|...+.+.|+.++|.+.++.+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999876
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-12 Score=118.10 Aligned_cols=325 Identities=14% Similarity=0.070 Sum_probs=245.1
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh-HHHHHHHHHHHcCCh
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAI-SWTALLNGFVKRGYF 196 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~ 196 (509)
...+......+.+.|....|+..|-.....-+..|.+.+....-..+.+.+..+...+...+.. .--.+..++....+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence 6666666677777888888888888877655556666555554445555554444444332211 112344566666788
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---CcHhHHHHHHHHHHhcCCHHHHHHHH
Q 010496 197 EEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFK---DNVKVCNTLIDLYSRCGCIEFARQVF 273 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 273 (509)
++++.-.+.....|++.+...-+....+.....|+++|+.+|+++++.+ | .|..+|..++-+-....++.---...
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 8888888888888866555554555556678889999999999999885 3 24567776653333322222211222
Q ss_pred HhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 274 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
-.+.+-.+.|...+.+-|.-.++.++|...|++.++.+. -....|+.+.+-|...++...|++-++++.+ -.+.|-.
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyR 399 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYR 399 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHH
Confidence 233344667788888889999999999999999998632 2456777788889999999999999999994 2344888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.|-.|.++|.-.+...-|+-+|++. .++| |...|.+|..+|.+.++.++|++.|++++..+..+...+..|+..|-+.
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999997 6777 6789999999999999999999999999999888888999999999999
Q ss_pred CCchHHHHHHHHHHh
Q 010496 432 GKWDGAGKIRRTMKG 446 (509)
Q Consensus 432 g~~~~A~~~~~~m~~ 446 (509)
++.++|.+.|++.++
T Consensus 480 ~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVE 494 (559)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999999998876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-13 Score=122.64 Aligned_cols=393 Identities=12% Similarity=0.055 Sum_probs=252.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHH-HHhhcCCCccchhHHHHHHHHHHHhCCCCC---chHHHHHH
Q 010496 49 TSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITL-LSGCADFPSQCLFLGAMIHGLVCKLGLDRN---NVMVGTAL 124 (509)
Q Consensus 49 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l 124 (509)
..|.+.|..+....+|+..|+.+.+...-|+......- -..+.+. +++..|.+.+...+..-.... -+.+.+.+
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kk--r~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKK--REFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeeh--hhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34555666667777777777777766555655433221 1223333 666666666665554421111 01233333
Q ss_pred HHHHHhcCCchHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHhcCC--------------------------
Q 010496 125 LDMYAKFGRMDLATVVFDAMRV--KSSFTWNAMIDGYMRRGDIESAVRMFDEMP-------------------------- 176 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------------------- 176 (509)
...+.+.|+++.|+.-|+...+ |+..+-..|+-++..-|+-++..+.|..|.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 4445666677777666666553 344433334444444555555555555543
Q ss_pred --------------------------------CCCH-------------hHHH--------HHHHHHHHcCChHHHHHHH
Q 010496 177 --------------------------------VRDA-------------ISWT--------ALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 177 --------------------------------~~~~-------------~~~~--------~li~~~~~~~~~~~A~~~~ 203 (509)
.++- ..+. .-...+.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1100 0000 1112355667777777777
Q ss_pred HHHHHcCCCCCHhHHHHH--HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh
Q 010496 204 REMQISGVEPDYVTIISV--LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 281 (509)
.-+.+..-+.-...-+.| +..+....++..|.++-+..+..+ .-+......-.......|++++|.+.|++....|.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 766654322222222222 222223345666666666655543 33444433334444557899999999999998887
Q ss_pred hhHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 010496 282 VSWNSIIV---GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCI 358 (509)
Q Consensus 282 ~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 358 (509)
.+-.+|.. .+-..|+.++|++.|-++... +..+...+..+...|-...+...|++++..... -++-|+.+...|
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHH
Confidence 66555543 467789999999999887654 344677777888889999999999999988873 445578899999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 359 VDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
.+.|-+.|+-..|.+..-+. +.-| +..+..-|..-|....-.++++.+|+++.-..|.....-..++.++.+.|++.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999999987554 5444 777888888889999999999999999988888765444556667788999999
Q ss_pred HHHHHHHHHhC
Q 010496 437 AGKIRRTMKGR 447 (509)
Q Consensus 437 A~~~~~~m~~~ 447 (509)
|..+|+..-.+
T Consensus 679 a~d~yk~~hrk 689 (840)
T KOG2003|consen 679 AFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHh
Confidence 99999988554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-11 Score=115.98 Aligned_cols=414 Identities=11% Similarity=0.058 Sum_probs=236.8
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHH----HhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCC
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTR----MTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDR 115 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (509)
..+.+...|-+-...--++|+.+...+++.+ +...|+..+-..|..=...|-.. |..-.++.+....+..|++.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a--gsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA--GSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc--CChhhHHHHHHHHHhhcccc
Confidence 4455667777777777788888888877665 34567777777776666666666 66667777777776666654
Q ss_pred Cc-hHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHH
Q 010496 116 NN-VMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLN 188 (509)
Q Consensus 116 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 188 (509)
.+ ..+|..-...|.+.+.++-|..+|....+- +...|......=-..|..+.-..+|++.... ....|-....
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ak 592 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAK 592 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 32 346666666677777777776666665431 3344444444434444455555544443221 2333333334
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 010496 189 GFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEF 268 (509)
Q Consensus 189 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (509)
.+-..|+...|..++....+.. +.+...+...+........++.|..+|.+.... .++..+|..-+....-.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 4444455555555555444432 223444444444444555555555555444442 2344444444444444444555
Q ss_pred HHHHHHhccCC---ChhhHHHHHHHHHhCC----------------------------------ChHHHHHHHHHHHHCC
Q 010496 269 ARQVFQRMHKR---TLVSWNSIIVGFAVNG----------------------------------FVGEALEYFNSMQKEG 311 (509)
Q Consensus 269 a~~~~~~~~~~---~~~~~~~l~~~~~~~~----------------------------------~~~~A~~~~~~m~~~g 311 (509)
|.+++++..+. -...|..+.+.+-+.+ ..-.|..++++....+
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 55555444432 1123444444444444 4444555554444432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 010496 312 FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLL 391 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 391 (509)
+-+...|...|+.-.+.|+.+.|..+..++.+ ..+.+-..|..-|....+.++-......+++. .-|.++...+.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia 824 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIA 824 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHH
Confidence 12334444444444455555555554444443 22333334444444444444433333333333 35667777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEE
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 465 (509)
..+....++++|.+-|.+++..+|++..+|..+...+.+.|.-++-.+++++.... .|.-+..|..+..-+.
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhHH
Confidence 88888899999999999999999999999999999999999999999999988764 4566666665544333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-13 Score=125.91 Aligned_cols=275 Identities=10% Similarity=0.024 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHhcCCCC--CHhHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHccCCHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVR--DAISWT-ALLNGFVKRGYFEEALECFREMQISGVEPDYVTII--SVLNACANVGTLGIGLW 236 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~--~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 236 (509)
.|++++|++.+...... ++..+. .......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765443 233333 3344557888888888888888763 45543332 33566778888888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---h--------hHHHHHHHHHhCCChHHHHHHHH
Q 010496 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL---V--------SWNSIIVGFAVNGFVGEALEYFN 305 (509)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~A~~~~~ 305 (509)
.++++.+.. |-+..++..+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888776 66777888888888888888888888877764311 1 23333443444455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 010496 306 SMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-N 383 (509)
Q Consensus 306 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 383 (509)
.+.+. .+.+......+..++...|+.++|.+++++..+ .+++.... ++.+....++.+++.+.++.. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65443 344666777788888888889888888888873 23444222 233334558888888888776 4555 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
...+..+...|.+.+++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567788888888889999999999988888775 4577888888899999999888886654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-14 Score=132.75 Aligned_cols=275 Identities=15% Similarity=0.109 Sum_probs=208.8
Q ss_pred CHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 010496 164 DIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISG--VEPDYVTIISVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 164 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (509)
+..+|...|..++.. .......+.++|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888875543 34555677888999999999999998887752 112566777777655332 222333
Q ss_pred -HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010496 239 -RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP 314 (509)
Q Consensus 239 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 314 (509)
+.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 3444444 667888999999999999999999999988754 4467888888888888999999999887753 22
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 010496 315 D-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSL 390 (509)
Q Consensus 315 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 390 (509)
. -..|..+...|.+.++++.|+-.|+++. .+.| +.+....+...+.+.|+.++|+++++++ ...| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 2 2345556677889999999999999988 4455 5666777788888999999999999887 4444 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+..+...+++++|+..++++.+.-|++..+|..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6677888999999999999999999999999999999999999999999888776643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-12 Score=123.23 Aligned_cols=277 Identities=11% Similarity=-0.030 Sum_probs=217.2
Q ss_pred cCCchHHHHHHHhcCCC--ChHHHHHH-HHHHHhCCCHHHHHHHHhcCCCC--CHhHHH--HHHHHHHHcCChHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVK--SSFTWNAM-IDGYMRRGDIESAVRMFDEMPVR--DAISWT--ALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~~~~~~A~~~~ 203 (509)
.|+++.|.+.+...... ++..+..+ ..+..+.|+++.|.+.|.++.+. +..... .....+...|++++|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 69999999999877653 23333333 44558899999999999988654 322222 3367889999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV-------KVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
+++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998864 446778888899999999999999999999988743222 13334444444555667777777777
Q ss_pred cC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 277 HK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 277 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
.+ .++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|..
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHH
Confidence 53 47788899999999999999999999999884 5555322 33444566999999999999985 3345677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
.+..+...+.+.+++++|.+.|+.+ ...|+...+..+...+.+.|+.++|.+++++.+..-
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7889999999999999999999997 788999999999999999999999999999987643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-12 Score=113.03 Aligned_cols=358 Identities=13% Similarity=0.138 Sum_probs=230.9
Q ss_pred cccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCC
Q 010496 36 NNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDR 115 (509)
Q Consensus 36 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (509)
..-+..+.+..+|.++|.++|+--..+.|.++|++-.....+.+..+||.+|.+.+-. ....+...|....+.|
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~------~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS------VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh------ccHHHHHHHHHhhcCC
Confidence 3345666778899999999999999999999999998877888999999999875444 3478899999999999
Q ss_pred CchHHHHHHHHHHHhcCCchHHHHHH----HhcC----CCChHHHHHHHHHHHhCCCHHH-HHHHHhcCC----------
Q 010496 116 NNVMVGTALLDMYAKFGRMDLATVVF----DAMR----VKSSFTWNAMIDGYMRRGDIES-AVRMFDEMP---------- 176 (509)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~---------- 176 (509)
+ ..++|+++.+..+.|+++.|.+.+ .+|+ +|+..+|..+|..+.+.++..+ |..++.++.
T Consensus 272 n-l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 272 N-LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred c-hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 8 999999999999999988766554 4443 4677788888888877777644 333332221
Q ss_pred --CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 010496 177 --VRDAISWTALLNGFVKRGYFEEALECFREMQISG----VEPD---YVTIISVLNACANVGTLGIGLWIHRYVLKQDFK 247 (509)
Q Consensus 177 --~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 247 (509)
..|...|...+..|.+..+.+-|..+..-+.... +.|+ ..-|..+....|+....+.-...|..|+-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 1145556666666667777777766654443221 2222 122444555566666666666777777666556
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV---SFTGALT 324 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~ 324 (509)
|+..+...++++..-.|.++-.-+++.++..-+ ..-+-+--++++..|......|+.. -+.....
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 666666666666666666666666665554211 1111222334444444443344322 2222222
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhc
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-------PMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 397 (509)
-|.. .-.+.....-.+++ .........+.+.-.+.+.|+.++|.+++..+ ...|......-++......
T Consensus 499 k~aa-d~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 499 KCAA-DIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHH-HHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 2211 11112222223344 22334455777788899999999999998766 2334455556777778888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 010496 398 GDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~ 416 (509)
+....|..+++-+...+..
T Consensus 575 ~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCHHHHHHHHHHHHHcCch
Confidence 8999999999998776544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=129.81 Aligned_cols=275 Identities=13% Similarity=0.088 Sum_probs=209.9
Q ss_pred CchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 133 RMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 133 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+..+|..+|+.++.. ...+...+..+|...+++++|+++|+.+... +...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 467888888886532 3456667788899999999999999887643 67788887766543 2334433
Q ss_pred HH-HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh
Q 010496 204 RE-MQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV 282 (509)
Q Consensus 204 ~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 282 (509)
.+ +... -+-.+.+|..+..+|+-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 33 3332 24457889999999999999999999999999876 557888888888888889999999999998887777
Q ss_pred hHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 010496 283 SWNS---IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCI 358 (509)
Q Consensus 283 ~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 358 (509)
.|++ +.-.|.+.++++.|+-.|+++++.+ +-+.+....+...+-+.|+.++|+++++++.. +.| |+-.-..-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 6665 5667889999999999999988853 22455566677778888999999999998882 233 44444455
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 359 VDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
+..+...+++++|+..++++ .+.|+ ..++..++..|.+.|+.+.|+.-|..+.+++|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66778888999999999988 45665 4577777888999999999999999998888874
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-12 Score=121.03 Aligned_cols=115 Identities=11% Similarity=-0.009 Sum_probs=57.7
Q ss_pred hcCCchHHHHHHHhcCCC--C-hHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCH--hHHHHHHHHHHHcCChHHHHHH
Q 010496 130 KFGRMDLATVVFDAMRVK--S-SFTWNAMIDGYMRRGDIESAVRMFDEMPV--RDA--ISWTALLNGFVKRGYFEEALEC 202 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~A~~~ 202 (509)
..|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.+.|....+ |+. ...-.....+...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 346666666666554432 1 12223333445555666666665555321 111 1222234555556666666666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 203 FREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 203 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
++.+.+.. +-+...+..+...+...|+++.|.+++..+.+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66665542 2234455555555666666666666666665554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-12 Score=121.68 Aligned_cols=281 Identities=11% Similarity=0.037 Sum_probs=206.7
Q ss_pred HHhCCCHHHHHHHHhcCCCC--C-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHHccCCHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVR--D-AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV--TIISVLNACANVGTLGI 233 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 233 (509)
....|+++.|.+.+....+. + ...+-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 34689999999999877543 2 334455567888999999999999998774 35543 33445788889999999
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHH----HHHHHHhCCChHHHHHHHHH
Q 010496 234 GLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNS----IIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~A~~~~~~ 306 (509)
|...++.+.+.. |-+..++..+..++...|++++|.+.+..+.+. +...+.. ........+..+.+.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999987 778889999999999999999999999998853 3333321 11122333333334445555
Q ss_pred HHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHH--HHhcCChHHHHHHHHhC-C
Q 010496 307 MQKEGF---KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE-HYGCIVDL--YSRAGRLEDALNVVENM-P 379 (509)
Q Consensus 307 m~~~g~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~~-~ 379 (509)
+..... +.+...+..+...+...|+.++|.+.+++..+.. |+.. ....++.. ....++.+.+.+.++.. +
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 554321 1377888888899999999999999999999532 3322 11012222 23457788888888776 4
Q ss_pred CCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 380 MKPN-E--VVLGSLLAACRTKGDIILAERLMK--YLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 380 ~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|+ . ....++...+.+.|++++|.+.|+ ...+..|++. .+..++..+.+.|+.++|.+++++-..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5554 4 567789999999999999999999 5666777654 477999999999999999999997643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=131.76 Aligned_cols=223 Identities=19% Similarity=0.210 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPV--RDAISWTALLNGFVK 192 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 192 (509)
+..|..+.......++++.|++.++++... ++..+..++.. ...+++++|.+++...-+ +++..+..++..+.+
T Consensus 44 ~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 44 PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHH
Confidence 444444444444444555555555544432 22233333333 344555555554443321 234444555555666
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 193 RGYFEEALECFREMQISG-VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.++++++.. |.+..+...++..+...|+.+++.+
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 666666666666654322 22344455555555666666666666666666654 4445556666666666666665444
Q ss_pred HHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 272 VFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 272 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
++.... ..|+..+..+..++...|+.++|+.+|++..+. .+.|......+..++...|+.++|.++.+++.
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 444433 234455556666666666666666666665553 12245555556666666666666666655544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-11 Score=109.53 Aligned_cols=262 Identities=13% Similarity=0.028 Sum_probs=207.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
++........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++++.- |....+|.++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33444445556667788888888888887763 5666677777778888888877777777777764 677888989988
Q ss_pred HHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
.|.-.|+..+|+++|.+...-| ...|-.....|+-.|..+.|+..|...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888899999999999876443 368999999999999999999988877663 221222233344558889999999
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010496 336 LRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENMP--------MKP-NEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
.++|..+. ++-| |+...+.+.-.....+.+.+|..+|+... ..+ -..+++.|..+|.+.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999988 4445 67777888777778899999999997751 111 34478999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+++++...|.+..++.+++..|...|+++.|...|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-11 Score=116.88 Aligned_cols=360 Identities=13% Similarity=0.082 Sum_probs=238.6
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
+...-.....+...|+.++|..++.+.++.. +-....|.+|-..+-.. |+.+.+...+- ....+.|.+...|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqr--Gd~eK~l~~~l--lAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQR--GDIEKALNFWL--LAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHc--ccHHHHHHHHH--HHHhcCCCChHHHHHH
Confidence 3333344444555699999999999988763 33667788888888777 77777766554 4444567778889999
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCCh---HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH----hHH----HHHHHHHHHc
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKSS---FTWNAMIDGYMRRGDIESAVRMFDEMPVRDA----ISW----TALLNGFVKR 193 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~ 193 (509)
.....+.|+++.|.-+|.+..+.++ ..+---...|-+.|+...|.+.|.++.+.++ .-+ ...++.+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 9888899999999999988875433 3333456678888998888888877754322 222 2345566677
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------------------------
Q 010496 194 GYFEEALECFREMQISG-VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD--------------------------- 245 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 245 (509)
++-+.|.+.++.....+ -..+...+++++..+.+...++.+...........
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 77788888888776632 23345567777888888888888887777666511
Q ss_pred CCCcHhHHHHHHHHHHhc--CCHHHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRC--GCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSF 319 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 319 (509)
..++..++ .+.-++... +...+++.-|..-. ..++..|.-+..+|...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 12222231 122223333 33333333322221 124567778888888888888888888888876544556678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP-----------MKPNEVVLG 388 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~ 388 (509)
..+..+|...|.++.|.+.|+++.. -.+.+...-..|...+.+.|+.++|.+.+..+. ..|+.....
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 8888888888888888888888884 223345566677778888888888888888862 234444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 389 SLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.....+...|+.++-......++.
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555566777777665554444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-12 Score=107.55 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=120.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhh--------HHHHHHHHHh
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS--------WNSIIVGFAV 293 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~ 293 (509)
..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+... |--+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 334444455555555555554433 2233444445555555555555555554444322222 2223333334
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010496 294 NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 373 (509)
..+.+.|..++.+......+ ....-..+.+.....|+++.|.+.++.+.+ .+..--..+...|..+|...|+.++...
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55666666666666654221 122222344556666667777666666663 2222224455666666777777777666
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH---HcCCchHHHHHHHHHHhCCC
Q 010496 374 VVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA---AVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 374 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~ 449 (509)
++.++ ...+....-..+...-....-.+.|...+.+-+...|.- ..+..++.... ..|+..+.+.+++.|+...+
T Consensus 271 fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 271 FLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 66554 344444444444444444445566666666666655543 23444444332 23557777778888877766
Q ss_pred ccCCcccE
Q 010496 450 QKKPGLSS 457 (509)
Q Consensus 450 ~~~~~~~~ 457 (509)
+.+|.+-.
T Consensus 350 ~~~~~YRC 357 (389)
T COG2956 350 RRKPRYRC 357 (389)
T ss_pred hhcCCcee
Confidence 66665433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=106.48 Aligned_cols=280 Identities=13% Similarity=0.125 Sum_probs=193.9
Q ss_pred cCCchHHHHHHHhcCCCChHHH---HHHHHHHHhCCCHHHHHHHHhcCCCC-C------HhHHHHHHHHHHHcCChHHHH
Q 010496 131 FGRMDLATVVFDAMRVKSSFTW---NAMIDGYMRRGDIESAVRMFDEMPVR-D------AISWTALLNGFVKRGYFEEAL 200 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~~~~~A~ 200 (509)
..+.++|+.+|-+|.+.|+.++ -+|.+.|.+.|..|.|+++-..+... | ..+...|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 5677888888888776655444 45677777888888888877766543 2 223445667778888888888
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN----VKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
.+|..+.+.+ ..-......|+..|-...+|++|..+-+++.+.+-.+. ...|..|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887654 33455667778888888888888888887777664333 234666777777778888888888887
Q ss_pred cCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 277 HKRTL---VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 277 ~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
.+.|+ ..--.+...+...|++..|.+.++...+.+...-+.+...|..+|.+.|+.++...++.++.+ . .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~--~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-T--NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c--cCCcc
Confidence 75433 344456677888899999999999888875555566778888899999999999998888873 2 34444
Q ss_pred HHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 010496 354 HYGCIVDLYSRAGRLEDALNVV-ENMPMKPNEVVLGSLLAACRT---KGDIILAERLMKYLVDLD 414 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 414 (509)
.-..+.+.-......+.|...+ +.+.-+|+...+..|+..... -|...+-...++.|+...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 4444555444555555555554 556778999988888876543 334555556666665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-10 Score=104.91 Aligned_cols=344 Identities=13% Similarity=0.060 Sum_probs=177.8
Q ss_pred HHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 010496 54 RHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR 133 (509)
Q Consensus 54 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (509)
+-...-+.+.|.-++.+..+. ++.+...| -++++. ..++.|.++++...+. -|.+..+|.+-...--.+|+
T Consensus 385 aAVelE~~~darilL~rAvec-cp~s~dLw----lAlarL--etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC-CPQSMDLW----LALARL--ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHH--HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCC
Confidence 334456667788888888874 23333334 344555 7788888888888877 36668888888888888899
Q ss_pred chHHHHHHHhcCC--------CChHHHHHHHHHHHhCC-------------------------------------CHHHH
Q 010496 134 MDLATVVFDAMRV--------KSSFTWNAMIDGYMRRG-------------------------------------DIESA 168 (509)
Q Consensus 134 ~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-------------------------------------~~~~A 168 (509)
.+...+++++-.. -+...|..=...|-..| .++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 8888888876541 13333333333333333 33334
Q ss_pred HHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 169 VRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 169 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
..+|....+- +...|...+..--..|..+....+|++.... ++-....|......+-..|+...|..++.++.+..
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 4444333221 2333433333334444555555555555443 12223333333444444555555555555555543
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGA 322 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 322 (509)
+-+...+...+........++.|..+|.+... ++...|.--+...--.+..++|++++++.++. .|+ ...|..+
T Consensus 615 -pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lml 691 (913)
T KOG0495|consen 615 -PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLML 691 (913)
T ss_pred -CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 33445555555555555555555555555442 33344444444444445555555555555543 222 2334444
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPM-KP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~ 400 (509)
.+.+-+.++++.|...|..-.+ ..+-.+..|..|...=-+.|.+-.|..++++..+ .| +...|...|..-.+.|+.
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 4444455555555554444332 2222344444444444455555555555555421 12 444555555555555555
Q ss_pred HHHHHHHHHHHh
Q 010496 401 ILAERLMKYLVD 412 (509)
Q Consensus 401 ~~a~~~~~~~~~ 412 (509)
+.|..++.++++
T Consensus 770 ~~a~~lmakALQ 781 (913)
T KOG0495|consen 770 EQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=105.11 Aligned_cols=358 Identities=11% Similarity=0.026 Sum_probs=238.4
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
+...|+.-+-...-.+.+.|....|++.|...... . +..|.+.+....-. .+.+ +.......+....+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~li--t~~e----~~~~l~~~l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELI--TDIE----ILSILVVGLPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhh--chHH----HHHHHHhcCcccchHH
Confidence 44445444444444556678888888888887642 2 33344444332222 2222 2222222221112233
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCCC----ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHH
Q 010496 120 VGTALLDMYAKFGRMDLATVVFDAMRVK----SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------DAISWTALLNG 189 (509)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~ 189 (509)
.---+..++-...+.+++.+-.+..... +...-+....+.-...++++|+.+|+++.+. |..+|+.++..
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 3333555666667777777777666543 3333333444455678899999999988754 56677776644
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFA 269 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 269 (509)
- +.+ ..+.++.+-...--+--+.|+.++.+-|+-.++.++|..+|++.++.+ |....+|+.+..-|....+...|
T Consensus 309 ~--~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 K--NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H--hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3 322 222233222211113345678888888888899999999999999887 67788899999999999999999
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 270 RQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
.+-|+++.+ .|-..|-.+.++|.-.+...-|+-.|++.... .+-|...|.+|..+|.+.++.++|++.|++... .
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-L 461 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-c
Confidence 999988764 46678888999999999999999999998885 244678889999999999999999999999884 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 347 RVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-------P-MKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
+ ..+...+..|...|-+.++..+|...++.- + ..|. ......|..-+.+.+++++|..........++
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 3 345677888999999999999988877654 1 2332 22333355667788888888887777766533
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-10 Score=102.87 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (509)
.|+|.+|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+.-+..-.++...+.+..+.....|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555543322 233344444555555666666666665555321333334444445555566666666666
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh-----------hhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL-----------VSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
.++.+.+ +.+..+.....++|.+.|++.....++..+.+... .+|..++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6665554 45555566666666666666666666665554311 24555555444444444444455544
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHH
Q 010496 308 QKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEV 385 (509)
Q Consensus 308 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 385 (509)
-.+ .+-++..-..++.-+.+.|+.++|.++.++.. +.+..|... .+ -.+.+-++.+.-.+..+.. ...| ++-
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 332 23334444445555566666666666666666 334444411 11 1233444444444433332 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.+|...|.+.+.+.+|...|+.+++..|. ...|..++.++.+.|+..+|.+++++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5566666666666666666666666665554 245666666666666666666666655533
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-10 Score=101.58 Aligned_cols=276 Identities=14% Similarity=0.061 Sum_probs=217.5
Q ss_pred cCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----CHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR----DAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
.|+|..|+++..+..+. ....|..-+.+.-+.|+.+.+-..+.+..++ +....-+..+.....|++..|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58899999888876543 3334555556677888999999988887655 3455667778888899999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV-------KVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
.++.+.+ +-+........++|.+.|++..+..++..+.+.+.-.+. .+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888864 445677788888999999999999999999988865443 34555665555555555555566666
Q ss_pred c---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 277 H---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 277 ~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
. +.++..-..++.-+.+.|+.++|.++..+..+++..|+ .. ..-.+.+.++...-++..++-.+..+..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 5 34778888889999999999999999999999877776 22 22346788888888888888776555444 6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
.+.+|...|.+.+.+.+|...|+.. +..|+..+|+.+..++.+.|+..+|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7889999999999999999999976 78999999999999999999999999999988753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-09 Score=98.97 Aligned_cols=399 Identities=11% Similarity=0.081 Sum_probs=209.2
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
..+-+...|-...+.-..++++..|.++|++.+.-. ..+...|..-+..-.+. .....|+-+++.....- |.-..
T Consensus 68 rnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~l--PRVdq 142 (677)
T KOG1915|consen 68 RNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTIL--PRVDQ 142 (677)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhc--chHHH
Confidence 455666677776777777788888888888877632 22333343333333344 56666666666666553 22133
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHcCC
Q 010496 120 VGTALLDMYAKFGRMDLATVVFDAMR--VKSSFTWNAMIDGYMRRGDIESAVRMFDEMP--VRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~ 195 (509)
.|.--+-+--..|++..|.++|++.. +|+...|.+.|..=.+-+.++.|..+++... .|++.+|--..+.-.++|+
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc
Confidence 44444444445567777777776654 4666677777776666677777777776543 3455566555555566666
Q ss_pred hHHHHHHHHHHHHc-CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----------------------------
Q 010496 196 FEEALECFREMQIS-GV-EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD---------------------------- 245 (509)
Q Consensus 196 ~~~A~~~~~~m~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 245 (509)
...|.++|+...+. |- ..+...+.+....-.+...++.|.-+|+-.++.-
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 66666666655442 10 0011223333333334444455554544444331
Q ss_pred ---------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--Ch---hhHHHHHH--------HHHhCCCh
Q 010496 246 ---------------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--TL---VSWNSIIV--------GFAVNGFV 297 (509)
Q Consensus 246 ---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~l~~--------~~~~~~~~ 297 (509)
-+.|-.+|--.+..-...|+.+...++|+++... .. ..|...|- .-....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0334444444455555555555555555554421 00 11111111 11124455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010496 298 GEALEYFNSMQKEGFKPDGVSFTGALTAC----SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 373 (509)
+.+.++|+..++. ++-...||..+=-.| .+..++..|.+++..+. |.-|...+|...|..=.+.+.++.+..
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 5555555555542 222333333222211 24455555666555555 555555555555555555666666666
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 374 VVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 374 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++++. ...| +..+|......-...|+.+.|..+|+-++..... +...|...+..-...|.+++|..+|+++.+.
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 66554 4444 3445555555555566666666666665553222 2223555555556666666666666666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-09 Score=97.54 Aligned_cols=362 Identities=13% Similarity=0.110 Sum_probs=281.5
Q ss_pred CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHH
Q 010496 79 NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAM 155 (509)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 155 (509)
+...|..-.+--... ++...|+.+++..+..+ ..|...|..-+.+-.++.++..|..++++... | -...|.-.
T Consensus 72 ~~~~WikYaqwEesq--~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQ--KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence 344444433333444 89999999999998876 44588899999999999999999999999874 2 23455556
Q ss_pred HHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMP--VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGI 233 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 233 (509)
+..=-..|++..|.++|+.-. +|+..+|.+.|..-.+.+.++.|.++++..+- +.|+..+|.-....-.+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 666667899999999998665 57999999999999999999999999999987 57999999999999999999999
Q ss_pred HHHHHHHHHHc-C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---------------------------------
Q 010496 234 GLWIHRYVLKQ-D-FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--------------------------------- 278 (509)
Q Consensus 234 a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------------------- 278 (509)
+.++|..+++. | -..+...+.++...-.++..++.|.-+|+-...
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999988764 2 122344566666655666777777766654321
Q ss_pred -----------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHH----HH-HH---hccCCHHH
Q 010496 279 -----------R---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV--SFTGA----LT-AC---SHAGLIED 334 (509)
Q Consensus 279 -----------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l----i~-~~---~~~~~~~~ 334 (509)
. |-.+|.-.+..-...|+.+...++|++.+.. ++|-.. .|... |+ +| ....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1 3346666777777789999999999999886 565321 11111 11 11 35678999
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDL----YSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKY 409 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 409 (509)
+.++++...+ -++-...+|..+--+ -.++.++..|.+++-.. |..|...+|...|..-.+.++++....+|++
T Consensus 385 tr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999984 333345555544433 45788999999999765 8899999999999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 410 LVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
.++.+|.+-.+|...+..-...|+++.|..+|+-.+.+..
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999887654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-11 Score=104.25 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=144.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566666777777777777777766542 234566667777777777888888877777653 23455666677777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
...|++++|...++++.+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888742222234456677778888888888888888776 3344 4567778888888999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998887777777888888888999999999988877553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-10 Score=99.06 Aligned_cols=266 Identities=12% Similarity=0.034 Sum_probs=207.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTA---LLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 224 (509)
|......+...+...|+.++|+..|++....|+.+... -...+.+.|+.++...+...+.... .-+...|-.-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 66777788888888888888888888776555544333 2344567888888888887776542 2344444444555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc--C-CChhhHHHHHHHHHhCCChHHHH
Q 010496 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH--K-RTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
....+++..|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+... . -+..+|.-++.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 667788999999999988876 6677777777888889999999999998765 3 47889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 302 EYFNSMQKEGFKPDGVSFTGAL-TACS-HAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
-+-+...+. ..-+..+...+. ..|. ...--++|.+++++.. .+.|+ ....+.+...+...|..+.++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 888877664 444566666553 3333 3344678999999887 45665 566778888999999999999999886
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 379 -PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 379 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
...||....+.|...+...+.+.+|...|..+++.+|.+..
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 78899999999999999999999999999999999998743
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=120.16 Aligned_cols=267 Identities=14% Similarity=0.150 Sum_probs=200.1
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 280 (509)
.++..+...|+.|+..||..++.-||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46678888999999999999999999999999999 9999998888999999999999999998877665 688
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..+|..+..+|..+|+... .+..++ ....+...+...|.-.....++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999766 222222 223344556666766666777766553334455553 3556
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 010496 361 LYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKG-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
.....|-++.+++++..++..........+++-+.... .+++-..+.+...+ . .++.+|..+..+-.-+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhHHH
Confidence 66778889999999988842211111111344444433 45555555555554 3 356789999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCcccccc
Q 010496 440 IRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGELYE 507 (509)
Q Consensus 440 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~~~~~ 507 (509)
++.+|++.|+..+++++|.++-+ . +....++-+++-|++.|++|++++...|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999999999988733 1 22346667778999999999999876553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-10 Score=114.35 Aligned_cols=261 Identities=14% Similarity=0.040 Sum_probs=190.1
Q ss_pred CHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHH---------ccCCHHHHHHHHHHHHH
Q 010496 179 DAISWTALLNGFVK-----RGYFEEALECFREMQISGVEPD-YVTIISVLNACA---------NVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 179 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 243 (509)
+...|...+++... .+.+++|..+|++..+. .|+ ...|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555554322 13467899999999885 554 445555554443 23458999999999999
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-VSF 319 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 319 (509)
.+ |.+..++..+..++...|++++|...|+++.+ | +...+..+..++...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 87 77888999999999999999999999999764 3 4567888899999999999999999999986 3442 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHh
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRT 396 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 396 (509)
..++..+...|++++|...++++.+. .+| +...+..+..++...|++++|...+.++ ...|+.. ..+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998742 234 4556777888899999999999999887 4455544 44555556676
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 397 KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
.| +.|...++++.+..-..+..+..+...|.-.|+.+.+..+ +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 66 4788888887775444333344477778888888888777 88877653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-10 Score=109.80 Aligned_cols=231 Identities=19% Similarity=0.233 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhccC-------C--
Q 010496 216 VTIISVLNACANVGTLGIGLWIHRYVLKQ-----D-FKDNVK-VCNTLIDLYSRCGCIEFARQVFQRMHK-------R-- 279 (509)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-- 279 (509)
.++..+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666665543 1 122222 233466677777777777777766642 1
Q ss_pred --ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--C
Q 010496 280 --TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE-----GF-KPDGV-SFTGALTACSHAGLIEDGLRYFDIMKKIYR--V 348 (509)
Q Consensus 280 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~ 348 (509)
-..+++.|..+|.+.|++++|..+++...+. |. .|... .++.+...|+..+++++|..+++...+... .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1235666666777777777776666655431 11 22222 355667778899999999999988765333 1
Q ss_pred CCC----HHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 010496 349 SPR----IEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVD-- 412 (509)
Q Consensus 349 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 412 (509)
.++ ..+++.|...|...|++.+|.++++++ +..+. ...++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 457899999999999999999999886 11222 44788889999999999999999988665
Q ss_pred --cCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 413 --LDPGVDS---NYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 413 --~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+|..+. +|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4555443 589999999999999999999998863
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-11 Score=102.86 Aligned_cols=223 Identities=17% Similarity=0.045 Sum_probs=132.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHhCCC
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF 296 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 296 (509)
.+.++|.+.|.+.+|.+.++..++. .|.+.||..|.++|.+..+...|+.+|.+..+ | |+....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4444555555555555555544443 23444455555555555555555555554442 2 22222223444445555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVE 376 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 376 (509)
.++|.++|+...+.. +.+......+...|.-.++.+.|..+|+++.+ .|. -+...|+.+.-+|.-.++++-++..|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 566666666555541 22344444455555556666666666666662 333 344556666666666666666666665
Q ss_pred hC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 377 NM---PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 377 ~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+. --.|+ ..+|..+.......|++..|.+.|+-++..++++...++.|+..-.+.|++++|..++......
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 54 11233 3467777777778888888888888888888888888888888888889999988888877654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-09 Score=91.95 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=111.4
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHH
Q 010496 212 EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSII 288 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~ 288 (509)
+-|......+..++...|+.++|...|++..-.+ +-+........-.+.+.|+++....+...+... ....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 3345556666666666666666666666665543 222333333333344555555555544444322 222233333
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 367 (509)
......+++..|+.+-++.+... +-+...|..-...+...|+.++|.-.|+... .+.| +..+|..|+.+|...|+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhch
Confidence 33344445555555555444421 1122233333334444555555555555544 2222 34455555555555555
Q ss_pred hHHH------------------------------------HHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 010496 368 LEDA------------------------------------LNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKY 409 (509)
Q Consensus 368 ~~~A------------------------------------~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 409 (509)
+.+| ..+++.. .++|+-. ..+.+...|...|..++++.++++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 5554 4444332 3444432 444444555555666666666666
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 410 LVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+...++. .....|++.+...+.+.+|++.|.....
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55554432 3455566666666666666665555433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-10 Score=109.31 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=173.7
Q ss_pred cccccccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHH
Q 010496 30 QISIQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVC 109 (509)
Q Consensus 30 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 109 (509)
..++......|..||.+||.++|..||..|+.+.|- +|.-|.-+....+...++.++.+.... ++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A--nd~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA--NDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc--ccccCCC-------
Confidence 344445555677888888888888888888888877 888887777777777888888776666 6665554
Q ss_pred HhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHH
Q 010496 110 KLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMP--VRDAISWTALL 187 (509)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li 187 (509)
.|. +.+|..|..+|.+.||... |+...+ ....+...+...|--.....++..+. ......-...+
T Consensus 80 ----ep~-aDtyt~Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i 146 (1088)
T KOG4318|consen 80 ----EPL-ADTYTNLLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI 146 (1088)
T ss_pred ----CCc-hhHHHHHHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence 355 7788888888888888665 222221 23334455556666555555555432 11112223345
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
......|-|+.+++++..+..... +. ++..+++-+.... ...+++.......--.++..+|..++++-...|+.+
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~--~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAW--NA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccc--cc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 556667778888887766643311 11 1111244433332 223333333322211588888888888888889999
Q ss_pred HHHHHHHhccCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010496 268 FARQVFQRMHKRT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL 331 (509)
Q Consensus 268 ~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 331 (509)
.|..++.+|.+.. ..-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9998888888653 3334444433 77788888888888888889998888877777776444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-10 Score=98.75 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=101.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666666777777777776666542 2234555566666666667777776666666654 4445555556666
Q ss_pred HHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
+...|++++|.+.++++... ....+..+...+...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666655421 12234444445555555555555555554431 1123344444445555555555
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVE 376 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 376 (509)
|...+++..+. .+.+...+..++..+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555421 12233333344444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=83.50 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=48.5
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcC
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD 92 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 92 (509)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999864
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=100.49 Aligned_cols=230 Identities=15% Similarity=0.094 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
--+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-++|.+..++..|+.++.+-++.- |.++.........+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3467889999999999999999998885 6788899999999999999999999999988874 677777778889999
Q ss_pred hcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010496 262 RCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
..++.++|.++|+.+.+. ++.....+...|.-.++.+-|+..|++++..|+. +...|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998754 5566666777888999999999999999999976 788899999999999999999999
Q ss_pred HHHhHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 339 FDIMKKIYRVSPR--IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 339 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
|.+.... .-.|+ ..+|..|.......|++.-|.+.|+-. ...| +...++.|.-.-.+.|++++|..++..+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9998842 33343 567888888889999999999999886 3333 56799999998999999999999999999988
Q ss_pred CC
Q 010496 415 PG 416 (509)
Q Consensus 415 ~~ 416 (509)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 87
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-09 Score=102.61 Aligned_cols=128 Identities=17% Similarity=0.117 Sum_probs=107.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRT 396 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 396 (509)
|......+.+.+..++|...+.++.+ -.+.....|......+...|..++|.+.|... -+.|+ +....++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445567788888999888888874 33446777888888889999999999998776 67775 5589999999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 397 KGDIILAER--LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 397 ~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|+..-|.. ++..+++.+|.++.+|..++..+.+.|+.++|.+.|....+..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 999888888 9999999999999999999999999999999999999887653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-10 Score=110.97 Aligned_cols=257 Identities=11% Similarity=-0.006 Sum_probs=180.4
Q ss_pred ChHHHHHHHHHHHh-----CCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHH---------cCChHHHHHHHHHHHHcC
Q 010496 148 SSFTWNAMIDGYMR-----RGDIESAVRMFDEMPVR---DAISWTALLNGFVK---------RGYFEEALECFREMQISG 210 (509)
Q Consensus 148 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~ 210 (509)
+...|...+.+... .+++++|...|++.... +...|..+..++.. .+++++|...+++..+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555555554321 23467899999877654 45666666665542 244789999999999864
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---hhHHHH
Q 010496 211 VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL---VSWNSI 287 (509)
Q Consensus 211 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l 287 (509)
+-+...+..+...+...|++++|...++++++.+ |.+...+..+..++...|++++|...++++.+.++ ..+..+
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 3467778888888899999999999999999987 67788899999999999999999999999875333 233444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhc
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRA 365 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 365 (509)
+..+...|++++|+..++++.... .| +...+..+..++...|+.++|...++++.. ..| +....+.+...|...
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhcc
Confidence 555677899999999999988753 34 344566677788899999999999998773 234 344456666677777
Q ss_pred CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 366 GRLEDALNVVENM----PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 366 g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
| ++|...++.+ ...+....+..+ .+.-.|+-+.+... +++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccch
Confidence 7 4666666555 233333333333 34455665555554 77766543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-09 Score=98.66 Aligned_cols=290 Identities=14% Similarity=0.110 Sum_probs=206.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHc
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPV--RD-AISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACAN 227 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 227 (509)
+-...+-|.+.|.+++|++.+..... |+ +..|....-+|...|+|+++.+.-.+.++ +.|+ ...+..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 34455668899999999999998764 45 77889999999999999999998888877 4665 4556666778888
Q ss_pred cCCHHHHHHHHHHHH-HcC-----------------------------CCCcHhHHHHHHHHHHhc------------C-
Q 010496 228 VGTLGIGLWIHRYVL-KQD-----------------------------FKDNVKVCNTLIDLYSRC------------G- 264 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~-~~~-----------------------------~~~~~~~~~~l~~~~~~~------------g- 264 (509)
.|++++|+.=..-.. -.| -+|... -...|..|... +
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHhhccccccccccCCCc
Confidence 999988764222111 000 111110 11112222210 0
Q ss_pred ----CHHHHHHHHHhccC--------------------C-----Chh------hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 265 ----CIEFARQVFQRMHK--------------------R-----TLV------SWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 265 ----~~~~a~~~~~~~~~--------------------~-----~~~------~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
...++.+.+..-.+ . |.. +......-+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01122222111110 0 111 111111223346888899999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVV 386 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 386 (509)
....++. .|..+...|....+.++.+..|....+ +.| +..+|..-.+.+.-.+++++|..-|++. .+.| +...
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 7544333 277777789999999999999999984 334 5677888888888899999999999887 6777 4668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
|..+..+..+.+++++++..|+..++..|..+.+|+..+..+..++++++|.+.|+..++..
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 88888888899999999999999999999999999999999999999999999999988753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-08 Score=90.31 Aligned_cols=382 Identities=13% Similarity=0.079 Sum_probs=229.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCC-CCCchHHHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGL-DRNNVMVGTALLDMYA 129 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 129 (509)
=+.-+...|++++|+....++...+ +-+...+..=+-++... +.++.|..+.+ ..+. ...+... .--+-+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~--~ky~~ALk~ik---k~~~~~~~~~~~-fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQL--DKYEDALKLIK---KNGALLVINSFF-FEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhh--hHHHHHHHHHH---hcchhhhcchhh-HHHHHHHH
Confidence 4566677889999999999998854 22344444444455555 77777764432 2221 1111111 12233345
Q ss_pred hcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------------------
Q 010496 130 KFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------------------------------- 178 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------------- 178 (509)
+.+..|+|+..++-....+..+...-...+-+.|++++|+++|+.+.+.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 6788999999988666666667777778888899999999998877311
Q ss_pred CHhHH---HHHHHHHHHcCChHHHHHHHHHHHHcC-------CCCCHh-------HHHHHHHHHHccCCHHHHHHHHHHH
Q 010496 179 DAISW---TALLNGFVKRGYFEEALECFREMQISG-------VEPDYV-------TIISVLNACANVGTLGIGLWIHRYV 241 (509)
Q Consensus 179 ~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (509)
...+| ......+...|++.+|+++++.....+ -.-+.. .-.-+.-++...|+..+|.+++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 11122 234456677899999999998883221 011111 1123444567889999999999998
Q ss_pred HHcCCCCcHhH----HHHHHHHHHhcC---------------------------------------------CHHHHHHH
Q 010496 242 LKQDFKDNVKV----CNTLIDLYSRCG---------------------------------------------CIEFARQV 272 (509)
Q Consensus 242 ~~~~~~~~~~~----~~~l~~~~~~~g---------------------------------------------~~~~a~~~ 272 (509)
++.. ++|... .|.|+.+-.... ..+.+.++
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8876 444422 222221111110 00111111
Q ss_pred HHhccCC-ChhhHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------H
Q 010496 273 FQRMHKR-TLVSWNSIIVGFA--VNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFD--------I 341 (509)
Q Consensus 273 ~~~~~~~-~~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~--------~ 341 (509)
....... ....+.+++.... +...+..|.+++....+....-........+......|+++.|.+++. .
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 1111101 1123333333322 223466777777776654222223445556667788999999999999 4
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM--------PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
+. ..+..|. +...++..+.+.++.+.|..++.+. ...+. ..++..++..-.+.|+.++|..+++++.+
T Consensus 410 ~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 410 IL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 54 3344444 4455677788877776666666554 11221 22444444555678999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 413 LDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 413 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
..|.+..+...++.+|++. +.+.|..+-+.+
T Consensus 487 ~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999887 677777765544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-07 Score=89.25 Aligned_cols=391 Identities=15% Similarity=0.155 Sum_probs=245.1
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhC-CCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLH-GTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTA 123 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 123 (509)
+..|-..+....++|+...-...|++.+.. -+..-...|-..+...... +-.+.+..+++..++.. +...+-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--~lPets~rvyrRYLk~~-----P~~~ee 174 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--GLPETSIRVYRRYLKVA-----PEAREE 174 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--CChHHHHHHHHHHHhcC-----HHHHHH
Confidence 345666677777788888888888776543 1112233465566655555 66667777777777663 334566
Q ss_pred HHHHHHhcCCchHHHHHHHhcCC--------------------------C--------------------C--hHHHHHH
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRV--------------------------K--------------------S--SFTWNAM 155 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~--------------------------~--------------------~--~~~~~~l 155 (509)
-+..+++.+++++|.+.+..+.. | | ...|.+|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 66777777777777777766641 0 1 1346778
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC---------------------------------------------------------
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVR--------------------------------------------------------- 178 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~--------------------------------------------------------- 178 (509)
.+.|.+.|.+++|.++|++....
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 88888899999998888765411
Q ss_pred -------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHccCCHHHHHHHHH
Q 010496 179 -------------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD------YVTIISVLNACANVGTLGIGLWIHR 239 (509)
Q Consensus 179 -------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (509)
++..|.. +.-+..|+..+-...|.+..+. +.|. ...|..+.+.|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1111111 1111235556666666666554 2331 2467788889999999999999999
Q ss_pred HHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccC-C--------------------ChhhHHHHHHHHHhCC
Q 010496 240 YVLKQDFKDN---VKVCNTLIDLYSRCGCIEFARQVFQRMHK-R--------------------TLVSWNSIIVGFAVNG 295 (509)
Q Consensus 240 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~ 295 (509)
+..+...+.- ..+|......-.+..+++.|+++.++..- | +...|...+...-..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9998764433 56788888888889999999999887641 0 2224544454444455
Q ss_pred ChHHHHHHHHHHHHCCC----------------------------------CCCHH-HHHHHHHHHh---ccCCHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGF----------------------------------KPDGV-SFTGALTACS---HAGLIEDGLR 337 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~----------------------------------~p~~~-~~~~li~~~~---~~~~~~~a~~ 337 (509)
-++....+|+++++..+ .|+.. .|+..+.-+. ....++.|..
T Consensus 492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 55555555555544321 23322 2222222222 2246788999
Q ss_pred HHHHhHHhcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010496 338 YFDIMKKIYRVSPRIEH--YGCIVDLYSRAGRLEDALNVVENM--PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 338 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 411 (509)
+|++..+ +.+|...- |......=-+.|-...|+.++++. ++++. ...|+..|.-....=.+.....+|++++
T Consensus 572 LFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999885 66664322 222222233568888889999887 34443 2367777765444444556678899998
Q ss_pred hcCCCCCc--hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 412 DLDPGVDS--NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 412 ~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.-|+... .....+..-.+.|..+.|..++..-.+-
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 88776332 3556667778899999999999776554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-07 Score=88.11 Aligned_cols=381 Identities=14% Similarity=0.136 Sum_probs=247.1
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCc--------------c------chhHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPS--------------Q------CLFLGAMIHG 106 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------------~------~~~~a~~~~~ 106 (509)
-|.+|...|.+.|.+++|.++|++..+. ..++.-|..+..+|+.... + +++....-++
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 5899999999999999999999998874 3456667777666654310 1 1111122222
Q ss_pred HHHHhC----------CCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---C------ChHHHHHHHHHHHhCCCHHH
Q 010496 107 LVCKLG----------LDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---K------SSFTWNAMIDGYMRRGDIES 167 (509)
Q Consensus 107 ~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~ 167 (509)
.+.... -.|.|...|..-+..+ .|+..+-...+.+... | -...|..+...|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 222221 1233444444443332 4566666666666542 1 23468888999999999999
Q ss_pred HHHHHhcCCCCC-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----------C------CHhHHHHHHH
Q 010496 168 AVRMFDEMPVRD-------AISWTALLNGFVKRGYFEEALECFREMQISGVE-----------P------DYVTIISVLN 223 (509)
Q Consensus 168 A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----------p------~~~~~~~l~~ 223 (509)
|..+|++..+.+ ..+|......-.+..+++.|+++++......-. + +...|...+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 999999887542 345666667777888999999998877542111 1 1123444455
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCh-hhHHHHHHHHHh---CC
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK----RTL-VSWNSIIVGFAV---NG 295 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~~ 295 (509)
.--..|-++....+|+.+++..+. ++.+.-.....+-...-++++.++|++-.. |++ ..|+..+.-+.+ ..
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 555678889999999999988743 344433444455666778999999998763 333 467766665554 34
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCChHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTAC--SHAGLIEDGLRYFDIMKKIYRVSPR--IEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A 371 (509)
..+.|..+|++.++ |.+|...-+..|+-+- -+.|....|+.+++++.. ++++. ...|+..|.-....=.+...
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 68999999999999 6777655443343322 245888999999999874 55553 56788877655544444444
Q ss_pred HHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCch
Q 010496 372 LNVVENM-PMKPNEVV---LGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 372 ~~~~~~~-~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 435 (509)
..++++. ..-|+... ...+...-.+.|.++.|..+|....+.-+. +...|...=..-.+.|+-+
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 4555544 23344432 333344567889999999999988885443 5556777777788888843
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=76.67 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.4e-09 Score=96.15 Aligned_cols=275 Identities=14% Similarity=0.086 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFV 191 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 191 (509)
..+.....+-+...+++.+..++++.+.+. ....+..-|..+...|+..+-..+=.++.. ..+.+|-++..-|.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 777777788888889999999999888754 344556666677777776555554444432 26778888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 010496 192 KRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR 270 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 270 (509)
-.|+.++|.++|.+.... .|. ...|......+.-.|..++|...+..+-+.= +...--+.-+.--|.+.++.+.|.
T Consensus 324 ~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 889999999998887653 343 5677888888888899999998888777652 222222333455577888899999
Q ss_pred HHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 271 QVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE----G--FKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 271 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
++|.... ..|+...+-+.-..-..+.+.+|..+|+..+.. + ..-...+++.|..+|.+.+.+++|+..+++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9988765 347778888877777788889999888877631 0 112455788899999999999999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 397 (509)
... -.+.+..++.++.-.|...|+++.|.+.|.+. .++|+..+...++..+...
T Consensus 481 aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 481 ALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 984 33557888999999999999999999999876 7889888877777765543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9e-08 Score=81.98 Aligned_cols=387 Identities=14% Similarity=0.051 Sum_probs=251.7
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
-+.+.+..+.+..++..|++++..-.+. .| +....+.+..++-.. .++..|...++++......-..... .-.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrl--Y~A 85 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRL--YQA 85 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHH--HHH
Confidence 4778888889999999999999988775 44 556666676777777 8999999999999888532221122 235
Q ss_pred HHHHhcCCchHHHHHHHhcCCCC-hHHHHHHH--HHHHhCCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHHcCChHHHHH
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKS-SFTWNAMI--DGYMRRGDIESAVRMFDEMPV-RDAISWTALLNGFVKRGYFEEALE 201 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~ 201 (509)
..+.+.+.+..|+++...|...+ ...-..-+ ...-..+++..+..++++.+. .+..+.+.......+.|+++.|.+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 66778899999999999998742 21111112 223467899999999999984 577777888888899999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-------------cH---------------hHH
Q 010496 202 CFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD-------------NV---------------KVC 253 (509)
Q Consensus 202 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~ 253 (509)
-|+...+-+-.-....|+..+ +..+.++++.|+++..+++++|+.. |+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 999988765343455666544 5567899999999999999876532 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
|.-...+.+.|+++.|.+.+-.|..+ |++|...+.-.= ..+++.+..+-+.-+..... ....||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 33444556788999999999999843 677766554322 23445555555555555433 346788888889999
Q ss_pred cCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCC---HH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVS-PRIEHYGCIVDLYS-RAGRLEDALNVVENMPMKP--NEVVLGSLLAACRTKGD---II 401 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~---~~ 401 (509)
..-++.|-+++.+-. ..... .+...|+ |++++. .....++|++-++.+...- .......-+..-...++ ..
T Consensus 323 Neyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 323 NEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 998999888876544 11111 2333344 344444 3456677776665541000 00011111111111111 22
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+++-++..++.- -.+...-++.|++..++..+.++|..-.+.
T Consensus 401 ~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 401 KAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 2233333333321 124566777889999999999999876553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-08 Score=92.80 Aligned_cols=226 Identities=11% Similarity=-0.014 Sum_probs=147.2
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 010496 194 GYFEEALECFREMQISG-VEPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR 270 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 270 (509)
++.+.++..+.++.... ..|+ ...|..+...+...|+.++|...|++.++.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776532 1222 3446666777788888888888888888876 667788888888888888888888
Q ss_pred HHHHhccC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 010496 271 QVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347 (509)
Q Consensus 271 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 347 (509)
..|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88888753 2 4567777888888888888998888888875 44433222222223456788888888876553 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH--HHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLED--ALNVVENM-P----MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV-D 418 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 418 (509)
..++... ..+.. ...|+..+ +.+.+.+. . ..| ....|..+...+...|++++|...|+++++.+|.+ .
T Consensus 195 ~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2333222 12222 23444433 33333221 1 112 23578888999999999999999999999988753 3
Q ss_pred chHHHHHHH
Q 010496 419 SNYVLLANM 427 (509)
Q Consensus 419 ~~~~~l~~~ 427 (509)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-08 Score=93.64 Aligned_cols=283 Identities=14% Similarity=0.065 Sum_probs=153.5
Q ss_pred HHHhCCCHHHHHHHHhcCCCC--C-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-----C
Q 010496 158 GYMRRGDIESAVRMFDEMPVR--D-AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANV-----G 229 (509)
Q Consensus 158 ~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~ 229 (509)
.+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+...+ +.+..-|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 344555555555555443322 2 2233444555566666666666666665543 22222333333333111 1
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH-HHHHHHHhccCCCh-hhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 230 TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE-FARQVFQRMHKRTL-VSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
+.+...++++++...- |.......+.-.+.....+. .+..++..+..+++ .+|+.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3444455555554432 22222211111111111121 22233333333332 34444444444444444444444443
Q ss_pred HHC--------------CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 010496 308 QKE--------------GFKPDG--VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 308 ~~~--------------g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 370 (509)
... .-+|.. .++..+...|...|++++|..++++..+ ..|+ +..|..-...|.+.|++.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 321 113333 3455666777888888888888888883 2454 7778888888888899998
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------h--HHHHHHHHHHcCCchHHHH
Q 010496 371 ALNVVENMP-MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-------N--YVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 371 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~--~~~l~~~~~~~g~~~~A~~ 439 (509)
|.+.++... +.+ |...-+..+..+.+.|++++|.+++....+.+.++.. . ....+.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888873 333 5556666677788888999998888887665532111 1 2456677888888888888
Q ss_pred HHHHHHh
Q 010496 440 IRRTMKG 446 (509)
Q Consensus 440 ~~~~m~~ 446 (509)
.|..+.+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 7766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-08 Score=97.15 Aligned_cols=237 Identities=15% Similarity=0.152 Sum_probs=143.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC----------CCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPV----------RDAI-SWTALLNGFVKRGYFEEALECFREMQIS-----G-VEPD 214 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~ 214 (509)
...+...|...|+++.|+.+++...+ +... ..+.+...|...+++.+|..+|+++... | ..|.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 33456666666666666666654432 1222 2345778889999999999999998653 2 1222
Q ss_pred -HhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CCc-HhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH
Q 010496 215 -YVTIISVLNACANVGTLGIGLWIHRYVLKQ-----DF-KDN-VKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNS 286 (509)
Q Consensus 215 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 286 (509)
..++..|..+|.+.|++++|..+++.+.+. +. .+. ...++.++..++..+++++|..+++..
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a---------- 351 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA---------- 351 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH----------
Confidence 345666777788888888887777765542 10 111 122444455555555555555554422
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC-CHHHHHHHHH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY----R-VSP-RIEHYGCIVD 360 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~li~ 360 (509)
.+++.........--..+++.|...|.+.|++++|.++++++.+.. + ..+ .-..++.+..
T Consensus 352 --------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 352 --------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred --------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 1111111110000112466677777777777777777777765422 1 112 1344666777
Q ss_pred HHHhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 361 LYSRAGRLEDALNVVENM--------PMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.|.+.+++.+|.++|.+. ...|+. .+|..|...|...|+++.|.++.+.+..
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 777888887777777665 134554 4899999999999999999999888874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-07 Score=85.06 Aligned_cols=393 Identities=13% Similarity=0.102 Sum_probs=226.9
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcc-cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHI-TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
+-..+.++|+.+.-.+....++++|++.|...... .||.. .|.-+--.-++. ++++.......+..+.. |.+.
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~Qm--Rd~~~~~~tr~~LLql~--~~~r 143 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQM--RDYEGYLETRNQLLQLR--PSQR 143 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHhh--hhhH
Confidence 44456677887777777777888888888887763 44433 232111111233 56666666666666653 5556
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC-----CChHHHHHH------HHHHHhCCCHHHHHHHHhcCCCC--CHhHH-H
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRV-----KSSFTWNAM------IDGYMRRGDIESAVRMFDEMPVR--DAISW-T 184 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~--~~~~~-~ 184 (509)
..|...+.++.-.|+...|..+++...+ ++...+... .....+.|.++.|++.+...... |...+ .
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 6777777777777888888777776642 333333322 23455677777777777665543 32222 3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHH-HHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS-VLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
.-...+.+.++.++|..++..+... .||..-|.. +..++.+.. ..+....+|....+. .|....-..+--....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhC
Confidence 4456677778888888888888775 455544443 344443222 233333555544443 1111111111111111
Q ss_pred cCCH-HHHHHHHHhccCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CC----------CCCCHH--HHHHHHH
Q 010496 263 CGCI-EFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFNSMQK----EG----------FKPDGV--SFTGALT 324 (509)
Q Consensus 263 ~g~~-~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g----------~~p~~~--~~~~li~ 324 (509)
..++ +...+++....+. -+.++..+.+.|-.....+-..++.-.+.. .| -+|... ++..++.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 1112 2222333333322 234444555444433322212222222221 11 144443 4556777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDII 401 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 401 (509)
.+-+.|+++.|..+++... +..|+ +..|..-.+.+...|++++|..++++.. ..||...-..-+.-..+.++.+
T Consensus 380 h~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH
Confidence 8889999999999999988 44666 5566667788999999999999999883 3455555546677778899999
Q ss_pred HHHHHHHHHHhcCCC---C---Cc-hHHHH--HHHHHHcCCchHHHHHHHHHH
Q 010496 402 LAERLMKYLVDLDPG---V---DS-NYVLL--ANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~---~---~~-~~~~l--~~~~~~~g~~~~A~~~~~~m~ 445 (509)
+|.++....-+.+.. + .. .|..+ +.+|.+.|++..|++=|..+.
T Consensus 457 eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 457 EAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 999999988776642 1 11 13322 456888888888877665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-07 Score=87.42 Aligned_cols=344 Identities=13% Similarity=0.070 Sum_probs=187.7
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
|+.+.|..........+ +.+...|+.+.-.+-.-.++++|++.|..... .|...|..+.-.-++.|+++...+.-
T Consensus 55 g~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 55556655555555443 33355566666555556666666666665542 24455555544445555555555444
Q ss_pred hcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhHHHHH------HHHHHccCCHHHHHHHHHHHH
Q 010496 173 DEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISG-VEPDYVTIISV------LNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 173 ~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~ 242 (509)
..+.+. ....|..++.++.-.|+...|..++++..+.. -.|+...|.-. .......|.++.|.+.+..-.
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 433322 33445555555566666666666666655543 12443333221 122344555555555554433
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh--hhHHHH-HHHHHhC-------------------------
Q 010496 243 KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL--VSWNSI-IVGFAVN------------------------- 294 (509)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~l-~~~~~~~------------------------- 294 (509)
..- ......-..-...+.+.+++++|..++..+..+++ ..|... ..++.+-
T Consensus 213 ~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 213 KQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred hHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 221 11122222334455555666666666655553322 222221 1111111
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH-------hc----------C
Q 010496 295 ----------GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK-------IY----------R 347 (509)
Q Consensus 295 ----------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~----------~ 347 (509)
.-.+..-.++..+.+.|+++--..+..+ |-.-...+ +++++.. .. .
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhH----HHHHHHHHHHhhcccccCCCccccccc
Confidence 1122333445555556655432222222 21111111 2222211 00 0
Q ss_pred CCCCHH--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 348 VSPRIE--HYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 348 ~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
-+|+.. ++..++..|-+.|+++.|..+++.. .-.|+.. .|..-.+.+...|++++|...++++.+++-.|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 145543 4456788889999999999999987 6667654 66666788999999999999999999987766443345
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
-+.-..++++.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 66777899999999999999988875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-09 Score=96.14 Aligned_cols=212 Identities=16% Similarity=0.113 Sum_probs=154.1
Q ss_pred cCCHHHHHHHHHHHHHcC-CC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQD-FK--DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
.+..+.+..-+.+++... .. .....|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777888887643 11 2245688888999999999999999998864 36688999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--
Q 010496 302 EYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-- 378 (509)
Q Consensus 302 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 378 (509)
..|++.++. .| +..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|...+.+.
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999985 44 4567778888889999999999999999843 343221222222345678899999999664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 379 PMKPNEVVLGSLLAACRTKGDIILAERLMKYLV-------DLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 379 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...|+...+ .+ .....|+...+ +.++.+. +..|....+|..++..+.+.|++++|+..|++..+.+
T Consensus 194 ~~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KLDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hCCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233433322 22 23345554443 2444443 3344455689999999999999999999999998765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-08 Score=95.67 Aligned_cols=260 Identities=13% Similarity=0.103 Sum_probs=188.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-- 264 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 264 (509)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |.+..-|..+..+.....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 45678899999999999886553 33345556677888999999999999999999998 667777777777763332
Q ss_pred ---CHHHHHHHHHhccCCCh--hhHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010496 265 ---CIEFARQVFQRMHKRTL--VSWNSIIVGFAVNGFV-GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 265 ---~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
+.+...++|+++....+ .....+.-.+.....+ ..+..++..+...|+++ +|..|-..|....+.+....+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 56777888888764322 2222222222222223 34556777788888764 455555556655555555555
Q ss_pred HHHhHHhc-------------CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 010496 339 FDIMKKIY-------------RVSPRI--EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDII 401 (509)
Q Consensus 339 ~~~~~~~~-------------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 401 (509)
+....... .-+|+. .++..+...|-..|++++|++++++. ...|. +..|..-...+-+.|++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55544211 123443 34567788899999999999999976 67776 558888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
+|.+.++.+..+++.|.-.-+-.+..+.+.|+.++|.+++....+.+..|
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999999988777888888999999999999999998877633
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-09 Score=98.20 Aligned_cols=249 Identities=15% Similarity=0.120 Sum_probs=190.6
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 300 (509)
-+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+- +....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467888999999999999887 788999999999999999999999999888754 456667777788889998999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 301 LEYFNSMQKEGFKPDGVSFTGAL-----------TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 301 ~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
++.++.-+....+ |..+. ..+.....+....++|-.+....+..+|..++..|.-.|--.|.++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999888764311 11111 1122223344555566666545665678888999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 370 DALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 370 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+|...|+.+ .++| |...||.|...++...+.++|+..|.+++++.|.-..+...|+..|...|.+++|.+.|-..+..
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999987 7788 56699999999999999999999999999999999999999999999999999999999776654
Q ss_pred CCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHc
Q 010496 448 GIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLC 494 (509)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 494 (509)
.-..... .+..++ .+.+|..+...+..|.+.
T Consensus 528 q~ks~~~---------------~~~~~~-se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 528 QRKSRNH---------------NKAPMA-SENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhccccc---------------ccCCcc-hHHHHHHHHHHHHHcCCc
Confidence 2211000 000022 578888888777777655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-07 Score=79.55 Aligned_cols=386 Identities=12% Similarity=0.059 Sum_probs=228.6
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhh-cCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGC-ADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK 130 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (509)
+.-+....++..|+.+++--...+-. ........|..| .+. |+++.|...+..+.... .++ ...+..|+.++.-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~-~~~-~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHL--GDYEEALNVYTFLMNKD-DAP-AELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhh--ccHHHHHHHHHHHhccC-CCC-cccchhHHHHHHH
Confidence 55666778888888888776643322 222344444433 445 88888888887777644 344 6666777777777
Q ss_pred cCCchHHHHHHHhcCCC---------------ChH--------------HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh
Q 010496 131 FGRMDLATVVFDAMRVK---------------SSF--------------TWNAMIDGYMRRGDIESAVRMFDEMPVRDAI 181 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~---------------~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 181 (509)
.|.+.+|.++-++..+. |.. .-.+|....--.-.+.+|+++++++...++.
T Consensus 104 Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 78888888877766531 111 1112233333344678888888877655432
Q ss_pred --HHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHc--cCCHHHHH--H----------HHHHHHH
Q 010496 182 --SWT-ALLNGFVKRGYFEEALECFREMQISGVEPDY-VTIISVLNACAN--VGTLGIGL--W----------IHRYVLK 243 (509)
Q Consensus 182 --~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~--~~~~~~a~--~----------~~~~~~~ 243 (509)
..| .+.-+|.+..-++-+.+++.-..+. .||. ...+..+....+ .|+..+.+ . ..+.+.+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 222 3455677888888888888777664 3443 333332222222 12211110 1 1111111
Q ss_pred cCC------C------C-----cHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCC-------ChHH
Q 010496 244 QDF------K------D-----NVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG-------FVGE 299 (509)
Q Consensus 244 ~~~------~------~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 299 (509)
.++ + | -+..-..|+-.|.+.+++++|..+.+++...++.-|-.-.-.++..| ...-
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 110 0 0 01223345566788899999999999888666655544444444444 3455
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 300 ALEYFNSMQKEGFKPDGV-SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 300 A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
|.+.|+..-+.+..-|.. --.++..++.-..++++++.+++.+. .+-...|...+ .+.++++..|.+.+|+++|-++
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhh
Confidence 666666555544433322 12234444555667888888888888 44444444444 4788999999999999999887
Q ss_pred C-CC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 379 P-MK-PNEVVLGS-LLAACRTKGDIILAERLMKYLVDLDPGVD-SNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 379 ~-~~-p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
. .+ .|..+|.. |.++|.+.++++.|..++-++ ..|... .....++..|.+.+.+=-|-+.|+.+....
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 3 11 25566655 456788899998887776544 222222 235566778889999888888888886654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-07 Score=81.87 Aligned_cols=301 Identities=13% Similarity=0.072 Sum_probs=195.1
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHH---HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH---H
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAM---IDGYMRRGDIESAVRMFDEMPVRDAISWTAL---L 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---i 187 (509)
.|.++.-..-|.+.+...|++..|+.-|....+-|+..|.++ ...|...|+-..|+.=|..+.+..+..+.+- .
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 333344555566666777777777777777776666655554 3456666766666666665554433333333 2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDY----------------VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
..+.+.|.+++|..-|+...+.. |+. ......+..+...|+...|+.....+++.. +.+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 45677777777777777776653 211 112233445667788888888888888775 77888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH----HHH--
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSF----TGA-- 322 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~l-- 322 (509)
.+..-..+|...|++..|+.-++.+. ..+..+.--+-..+-..|+.+.++..+++-++. .||.... ..|
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 88888888888888888877666554 345666666777777788888888888777763 5664321 111
Q ss_pred -HH------HHhccCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 010496 323 -LT------ACSHAGLIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLL 391 (509)
Q Consensus 323 -i~------~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 391 (509)
.. .....+.|.++..-.+.+.+...-.+ ....+..+..++...|++.+|++...+. .+.|+ +.++.--.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 11 12344666677776666663211111 1233455666777778888888877775 56665 66777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.+|.-...++.|+.-|+++.+.++.+..
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 8888888888888888888888877653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-06 Score=81.11 Aligned_cols=331 Identities=15% Similarity=0.084 Sum_probs=223.2
Q ss_pred chHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHH
Q 010496 117 NVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-----DAISWTALLN 188 (509)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~ 188 (509)
++.+|..|.-++...|+++.+-+.|++...- ....|+.+...|...|.-..|..+++....+ +...+-..-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4788888888889999999999999988743 5567888888899999999999999866533 2333333333
Q ss_pred HH-HHcCChHHHHHHHHHHHHc--CC--CCCHhHHHHHHHHHHcc----CC-------HHHHHHHHHHHHHcCCCCcHhH
Q 010496 189 GF-VKRGYFEEALECFREMQIS--GV--EPDYVTIISVLNACANV----GT-------LGIGLWIHRYVLKQDFKDNVKV 252 (509)
Q Consensus 189 ~~-~~~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~----~~-------~~~a~~~~~~~~~~~~~~~~~~ 252 (509)
.| -+.+..++++.+-.+.... +. ......|..+.-+|... .. ..++.+.+++..+.+ +.|..+
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~ 480 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLV 480 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchH
Confidence 33 3457788888888887762 11 12334555555555432 11 256777888888876 445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCC-------------
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE-GFKP------------- 314 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p------------- 314 (509)
...+.--|+..++.+.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+..... |..-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 5555666788889999998888765 347789999999999999999999999987764 2100
Q ss_pred -----CHHHHHHHHHHHhc---------c--------------CCHHHHHHHHHHhHH-------hcC---------CCC
Q 010496 315 -----DGVSFTGALTACSH---------A--------------GLIEDGLRYFDIMKK-------IYR---------VSP 350 (509)
Q Consensus 315 -----~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~~~~-------~~~---------~~~ 350 (509)
-..|...++..+-. . ++..++.+..+.+.. ..+ ..|
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 01122222221110 0 011111111111100 001 111
Q ss_pred --C------HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 351 --R------IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 351 --~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
+ ...|......+.+.+..++|...+.+. ++.| ....|......+...|..++|.+.|..+...+|++...
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 1 223445666777888888888777776 4444 45577777788889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHH--HHHHHHhCC
Q 010496 421 YVLLANMYAAVGKWDGAGK--IRRTMKGRG 448 (509)
Q Consensus 421 ~~~l~~~~~~~g~~~~A~~--~~~~m~~~~ 448 (509)
..+++.++.+.|+..-|.. ++..+.+.+
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 9999999999998887777 888887754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-07 Score=82.39 Aligned_cols=372 Identities=14% Similarity=0.113 Sum_probs=191.8
Q ss_pred HHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 010496 53 SRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFG 132 (509)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (509)
.+.+..|+++.|+.+|...+... ++|...|+.=..+++.. ++++.|.+--...++.. |+=+..|..+..++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence 44566788888888888877643 33555676667777777 77777777666665554 554677788888888888
Q ss_pred CchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhc------CC-CC------CHhHHHHHHHHHHHc---
Q 010496 133 RMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDE------MP-VR------DAISWTALLNGFVKR--- 193 (509)
Q Consensus 133 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~------~~-~~------~~~~~~~li~~~~~~--- 193 (509)
++++|+..|.+-.+. +...++.+..++... . ++.+.|.. +. .| ....|..++..+-+.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 888888888876643 444555555555111 0 01111110 00 00 111222222222111
Q ss_pred -------CChHHHHHHHHH-----HHHcC-------CCC----------------------CHhHHHHHHHHHHccCCHH
Q 010496 194 -------GYFEEALECFRE-----MQISG-------VEP----------------------DYVTIISVLNACANVGTLG 232 (509)
Q Consensus 194 -------~~~~~A~~~~~~-----m~~~~-------~~p----------------------~~~~~~~l~~~~~~~~~~~ 232 (509)
.+...|...+.. +...| ..| -..-...+.++..+..++.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 001111111100 00000 001 1134566777777888888
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---h-------hHHHHHHHHHhCCChHHHHH
Q 010496 233 IGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL---V-------SWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 233 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~~ 302 (509)
.+.+.+...++.. .+..-++....+|...|.+..+...-....+..- . .+..+..+|.+.++++.|+.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 8888888887765 5566677777788888877777666665543311 1 22224445666777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI-EHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 303 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
.|.+.+.....|+..+ +....+++....+... -+.|.. .-...-...+.+.|++..|+..+.++ ..
T Consensus 320 ~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 8888776544443322 1122222222222222 111211 11111133444455555555555444 22
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 381 KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 381 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.| |...|....-+|.+.|.+..|+.-.+..++++|.....|..=+.++....+|++|++.|.+-.+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23 3344555555555555555555555555555555444455555555555555555555544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-08 Score=80.48 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
+...|.-.|...|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|++.++.. |.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667777777777777777777753 3345666677777777777777777777777765 566677777777777
Q ss_pred hcCCHHHHHHHHHhccC-C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010496 262 RCGCIEFARQVFQRMHK-R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 336 (509)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|...|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776653 2 234566666666666777777777766666521 13345555566666666666666
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 337 RYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
.+++.... +..++..+....|+.-.+.|+.+.+-++=..
T Consensus 194 ~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 194 LYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66666663 2235555555555555566665555544333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-07 Score=88.07 Aligned_cols=191 Identities=12% Similarity=0.089 Sum_probs=95.8
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CC--h-HHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KS--S-FTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWT 184 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 184 (509)
+|+.+..+..+...+...|+.+.+.+.+..... .+ . .........+...|++++|.+.++..... +...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 466677777788777777877776665555431 11 1 11112233345566666666666554321 333332
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 185 ALLNGFVK----RGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 185 ~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
. ...+.. .+....+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 1 112222 23333333333331 111222 2223344445566666666666666666654 4445555566666
Q ss_pred HHhcCCHHHHHHHHHhccCC-----Ch--hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKR-----TL--VSWNSIIVGFAVNGFVGEALEYFNSMQ 308 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~ 308 (509)
+...|++++|...+++..+. +. ..|..+...+...|++++|..++++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666666654421 11 123345555555566666666665553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-07 Score=79.83 Aligned_cols=342 Identities=13% Similarity=0.130 Sum_probs=204.9
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
+++..|..+++.-...+-+.. ..+-.-+..++.+.|++++|...+..+... +...+..|...+.-.|.+.+|..+-
T Consensus 36 rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 677777777776665543333 233344667788999999999999988753 5567777777777788899988887
Q ss_pred hcCCCC---------------CHh---HH-----------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHH-
Q 010496 173 DEMPVR---------------DAI---SW-----------TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL- 222 (509)
Q Consensus 173 ~~~~~~---------------~~~---~~-----------~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~- 222 (509)
....+. |.. ++ -.|....-..-.+++|++++...... .|+....+.-+
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~A 192 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMA 192 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHH
Confidence 766421 111 01 11222222233577888888887764 45555555433
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc--CCHHH--HHHHHHhcc----------C----------
Q 010496 223 NACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC--GCIEF--ARQVFQRMH----------K---------- 278 (509)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~--a~~~~~~~~----------~---------- 278 (509)
-+|.+..-++.+.+++.-.++.- +.+....|.......+. |+..+ -.++-+... +
T Consensus 193 LCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 45567777777777777666542 44444444443333322 22111 111111111 0
Q ss_pred -----------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHh
Q 010496 279 -----------RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC-----SHAGLIEDGLRYFDIM 342 (509)
Q Consensus 279 -----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~~~~~~a~~~~~~~ 342 (509)
-=+.....++--|.+.++..+|..+.+++.- ..|-......+..+- ........|.+.|+.+
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 0112333445557788888888888776532 233333333333221 1122355567777666
Q ss_pred HHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 343 KKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 343 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
-. .+..- ++.--.++..++.-..++++++-+++.++ +..|...-..+..+.+..|++.+|+++|-++......+..
T Consensus 350 G~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 350 GE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred cc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 52 23222 22223445566666678888888887773 3334444445788999999999999999988776666666
Q ss_pred hH-HHHHHHHHHcCCchHHHHHHHHH
Q 010496 420 NY-VLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 420 ~~-~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
.| ..|+++|.+.++.+-|..++-++
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 66 45778999999999998887655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-07 Score=78.35 Aligned_cols=199 Identities=14% Similarity=0.055 Sum_probs=156.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHh
Q 010496 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV 293 (509)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 293 (509)
+...|.-.|...|+...|..-+++.++.+ |.+..++..+...|.+.|+.+.|.+.|++..+ .+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34556677889999999999999999887 67788888899999999999999999988763 466778888888899
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010496 294 NGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDAL 372 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 372 (509)
.|++++|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+. .+-.......+.....+.|++..|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999888753222 2457778887888899999999999988842 2223456677888888889999998
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 373 NVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 373 ~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
.+++.. ...++..+.-..|..-...|+.+.+.+.=.++.+..|...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888876 3457777777778888888888888888777777777654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-06 Score=80.49 Aligned_cols=350 Identities=11% Similarity=0.055 Sum_probs=220.7
Q ss_pred hcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHH--HhCCCHHH
Q 010496 90 CADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGY--MRRGDIES 167 (509)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 167 (509)
.... ++++.|.+....++..+ |++..++..-+.++++.+.+++|+.+.+.-........-.+=.+| .+.+..++
T Consensus 22 ~~~~--~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 22 HGKN--GEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred hccc--hHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 3444 89999999999998887 777899999999999999999999877765532111111123444 47899999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------------------------C--CHhHHHH
Q 010496 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE-------------------------P--DYVTIIS 220 (509)
Q Consensus 168 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-------------------------p--~~~~~~~ 220 (509)
|+..++...+.+..+...-...+-+.|++++|+.+|+.+.+.+.. | ...+|..
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 999999776667667777778889999999999999998654321 0 1124444
Q ss_pred HHH---HHHccCCHHHHHHHHHHHHHcCC-------CCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhccCC---C
Q 010496 221 VLN---ACANVGTLGIGLWIHRYVLKQDF-------KDNV-------KVCNTLIDLYSRCGCIEFARQVFQRMHKR---T 280 (509)
Q Consensus 221 l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 280 (509)
+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-++-..|+..+|..+|..+.+. |
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 433 34577899999999988833210 0001 12234566677889999999988876532 1
Q ss_pred hh----hHHHHHHHHH---------------------------------------------hCCChHHHHHHHHHHHHCC
Q 010496 281 LV----SWNSIIVGFA---------------------------------------------VNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 281 ~~----~~~~l~~~~~---------------------------------------------~~~~~~~A~~~~~~m~~~g 311 (509)
.. .-|.++..-. ..+..+.+.++-.... +
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~ 335 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--G 335 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--c
Confidence 10 1111111000 0011111111111100 1
Q ss_pred CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH--------hC-C
Q 010496 312 FKPDGVSFTGALTACS--HAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVE--------NM-P 379 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~-~ 379 (509)
..|. ..+..++..+. +...+..+..++....+ +.+-+ ..+....+......|+++.|.+++. .+ .
T Consensus 336 ~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 336 MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 1222 23334443332 23356777777777764 33333 4556677788889999999999988 33 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C---CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 380 MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP----G---VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+.-.+.+...++..+.+.++.+.|..++..++..-. . -...+..++..-.+.|+.++|..+++++.+.+
T Consensus 413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 333445666667778888888888888888776321 1 12235556666678899999999999998843
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-09 Score=94.34 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=69.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH----HhcCC
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY----SRAGR 367 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 367 (509)
...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+..++ .-.+.
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchh
Confidence 3345555555444321 2333444445555555555555555555551 22221 111222222 22234
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc-hHHHHHHHHH
Q 010496 368 LEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKW-DGAGKIRRTM 444 (509)
Q Consensus 368 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m 444 (509)
+.+|..+|+++ ...++..+.+.+..++...|++++|.+++.++.+.+|.++.+...++.+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55566666555 23345555555666666666666666666666666666555555666665555555 4455555555
Q ss_pred Hh
Q 010496 445 KG 446 (509)
Q Consensus 445 ~~ 446 (509)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-06 Score=83.27 Aligned_cols=297 Identities=11% Similarity=-0.054 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CC--CH-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 010496 149 SFTWNAMIDGYMRRGDIESAVRMFDEMP---VR--DA-ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL 222 (509)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 222 (509)
...|..+...+...|+.+.+.+.+.... .. +. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 3456666666777777777655555432 11 22 222333456778899999999999988752 334434432 2
Q ss_pred HHHH----ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCC
Q 010496 223 NACA----NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG 295 (509)
Q Consensus 223 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 295 (509)
..+. ..+..+.+.+.+... ....+........+..++...|++++|...+++..+ .+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 2222 344555555555441 112233345556777889999999999999999874 35667888899999999
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH-H--HHHHHHHhcCChH
Q 010496 296 FVGEALEYFNSMQKEGF-KPDG--VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY-G--CIVDLYSRAGRLE 369 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~ 369 (509)
++++|...+++...... .|+. ..+..+...+...|++++|..+++++.......+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999999887532 2232 245567788899999999999999986322212222211 1 2333344445433
Q ss_pred HHHHH---HHhC-C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHHcCC
Q 010496 370 DALNV---VENM-P---MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG---------VDSNYVLLANMYAAVGK 433 (509)
Q Consensus 370 ~A~~~---~~~~-~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 433 (509)
.+.++ .... . .............++...|+.++|..+++.+...... ........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 1111 1 1111222235666788999999999999988663321 22345566677889999
Q ss_pred chHHHHHHHHHHhCC
Q 010496 434 WDGAGKIRRTMKGRG 448 (509)
Q Consensus 434 ~~~A~~~~~~m~~~~ 448 (509)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-08 Score=81.73 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 361 LYSRAGRLEDALNVVENMP----MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
.+.+.|+++.|.+.+..|+ ...|+.|...+.-.- ..+++.+..+-+.-+++..|-++.+|..++..||+..-++-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 3567788888888888883 334667776654322 34556777777788888888888889999999999888888
Q ss_pred HHHHHHH
Q 010496 437 AGKIRRT 443 (509)
Q Consensus 437 A~~~~~~ 443 (509)
|-.++-+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 8877643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-06 Score=81.16 Aligned_cols=339 Identities=14% Similarity=0.069 Sum_probs=220.3
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--CC-hHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--KS-SFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
|+++.|...|...+.. +|.|...|..-..+|+..|++++|++=-.+-.+ |+ +..|.-...++.-.|++++|+..|
T Consensus 16 ~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 8999999999887766 477799999999999999999999887766654 32 457889999999999999999999
Q ss_pred hcCCCC---CHhHHHHHHHHHHHcCChHHH---HHHHHHHHHc---CCCCCHhHHHHHHHHHHcc-------CCHHHHHH
Q 010496 173 DEMPVR---DAISWTALLNGFVKRGYFEEA---LECFREMQIS---GVEPDYVTIISVLNACANV-------GTLGIGLW 236 (509)
Q Consensus 173 ~~~~~~---~~~~~~~li~~~~~~~~~~~A---~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~-------~~~~~a~~ 236 (509)
.+-.+. |...++.+..++.......+. -.++..+... ........|..++..+-+. ...+...+
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 977654 566777777766211000000 0011111000 0000111222222222111 00111111
Q ss_pred HHHHHHH--------cC-------CCC----------------------cHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 010496 237 IHRYVLK--------QD-------FKD----------------------NVKVCNTLIDLYSRCGCIEFARQVFQRMHKR 279 (509)
Q Consensus 237 ~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 279 (509)
..-.+.. .+ ..| -..-...+..+..+..++..|.+-+.....-
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 1111110 00 011 0112456788888888999999988877643
Q ss_pred --ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 010496 280 --TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT-------GALTACSHAGLIEDGLRYFDIMKKIYRVSP 350 (509)
Q Consensus 280 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 350 (509)
+..-++....+|...|.+..+...-....+.|.. ...-|+ .+..++.+.++++.++..|.+... ....|
T Consensus 254 ~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt-e~Rt~ 331 (539)
T KOG0548|consen 254 ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT-EHRTP 331 (539)
T ss_pred hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh-hhcCH
Confidence 4445666777899999988888887777766533 222222 233466677889999999999874 33334
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+ ...+....+++....+.. -+.|... -...-...+.+.|++..|++.|.+++..+|+++..|...+-+|
T Consensus 332 ~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 332 D---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred H---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3 233445566666666554 2445432 3333367788999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010496 429 AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.|.+..|++-.+..++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhhHHHHHHHHHHHHhc
Confidence 9999999999977766665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.5e-08 Score=86.09 Aligned_cols=248 Identities=14% Similarity=0.110 Sum_probs=150.2
Q ss_pred HHhCCCHHHHHHHHhcCCCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVR----DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 234 (509)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .+..... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566776665444 2111 2334455667777888766543 3333332 55555555555555444444455
Q ss_pred HHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010496 235 LWIHRYVLKQDFK-DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK 313 (509)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 313 (509)
..-+++....... .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444443333222 23333344445566678888888887765 45666677788888888888888888888764 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 010496 314 PDGVSFTGALTACSH----AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVL 387 (509)
Q Consensus 314 p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 387 (509)
.| .+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+. ...| +..++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 344444444432 3468888888888874 44567778888888888888888888888775 4444 45577
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCC
Q 010496 388 GSLLAACRTKGDI-ILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 388 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 418 (509)
..++.+....|+. +.+.+++.++....|..+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7777777777776 667788888888777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-06 Score=75.41 Aligned_cols=282 Identities=13% Similarity=0.042 Sum_probs=187.9
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHH---HHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAM---IDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~ 172 (509)
+.+..|..-+...++. +|+|..++..-...|...|+-..|+.-|+++.+..+..+.+- ...+.+.|.+++|..=|
T Consensus 52 ~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 4444444444444443 355455555555566666666666666665554322222222 23455666666666666
Q ss_pred hcCCCCCH------h------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHH
Q 010496 173 DEMPVRDA------I------------SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 173 ~~~~~~~~------~------------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 234 (509)
+.+...++ . .....+..+...|+...|++....+.+.. +.|...|..-..+|...|++..|
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHH
Confidence 55543211 1 11233455667788999999999888853 55888888888899999999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh------hHHHH---------HHHHHhCCChHH
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV------SWNSI---------IVGFAVNGFVGE 299 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~l---------~~~~~~~~~~~~ 299 (509)
+.=++.+.+.. ..+...+..+-..+...|+.+.++...++..+-|+. .|..+ +......++|.+
T Consensus 209 I~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~ 287 (504)
T KOG0624|consen 209 IHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTE 287 (504)
T ss_pred HHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 88888877765 556777777888888899999998888888754332 12111 223456788999
Q ss_pred HHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 010496 300 ALEYFNSMQKEGFKPDGV---SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVV 375 (509)
Q Consensus 300 A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 375 (509)
+++..+..++........ .+..+-.++...+++.+|++...++. .+.|+ +.++.--..+|.-...++.|+.-|
T Consensus 288 cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 288 CLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999988864332233 34445556778899999999999998 44564 888888888999999999999999
Q ss_pred HhC-CCCCCH
Q 010496 376 ENM-PMKPNE 384 (509)
Q Consensus 376 ~~~-~~~p~~ 384 (509)
+.. ...++.
T Consensus 365 e~A~e~n~sn 374 (504)
T KOG0624|consen 365 EKALELNESN 374 (504)
T ss_pred HHHHhcCccc
Confidence 887 455543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-07 Score=88.35 Aligned_cols=249 Identities=15% Similarity=0.105 Sum_probs=188.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
...+.+.|+..+|.=.|+..++.+ +-+...|..|.......++-..|+..+++.++.+ |.+..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 445678899999999999998874 4467889999999999999999999999999987 78899999999999999999
Q ss_pred HHHHHHHHhccCCC-hhhHHHHH---------HHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 267 EFARQVFQRMHKRT-LVSWNSII---------VGFAVNGFVGEALEYFNSMQK-EGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 267 ~~a~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
..|++.|+.-.... ...|.... ..+..........++|-++.. .+..+|......|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988763211 00110000 112222234455555555544 44346666777777778889999999
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 336 LRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
++.|+.++ .++| |...||.|...++...+.++|+..|.+. .++|.-+ +...|.-.|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999 4556 6889999999999999999999999887 7889744 777788899999999999999998888
Q ss_pred cCCCC----------CchHHHHHHHHHHcCCchHHHHH
Q 010496 413 LDPGV----------DSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 413 ~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
+.+.. ...|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 65441 13566666666666766644443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-06 Score=84.02 Aligned_cols=259 Identities=15% Similarity=0.191 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhH--------H--------
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMR--VKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAIS--------W-------- 183 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~-------- 183 (509)
.+.+..|.+.|.+.+|.+....-. ..|......+..++.+..-+++|-++|+.+..++... |
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 345777888888877766543221 2355555555555555555566666665554332110 0
Q ss_pred -----------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhH
Q 010496 184 -----------TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKV 252 (509)
Q Consensus 184 -----------~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (509)
......+...|+++.|+..|-+.. .....+.+......+.+|+.+++.+.... .-...
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~y 767 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGY 767 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccccc
Confidence 011112222233333332222111 11122334445556666666666555543 22334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI 332 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 332 (509)
|..+.+.|...|+++.|.++|-+.. .++-.|..|.+.|+|++|.++-.+.. |.......|..-..-+-+.|++
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcch
Confidence 5566666677777777777665543 34445666667777776666654432 3333444454444445556666
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMK 408 (509)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (509)
.+|+++|-.+. .|+. .|.+|-+.|..+..+++..+-.-.--..|-..+..-+-..|+...|...|-
T Consensus 841 ~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 841 AEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 66666554443 2433 345666666666666666554211112233344444445555555544433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-06 Score=82.72 Aligned_cols=366 Identities=13% Similarity=0.080 Sum_probs=226.8
Q ss_pred CcccHHHHHHh--hcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC----------
Q 010496 79 NHITFITLLSG--CADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---------- 146 (509)
Q Consensus 79 ~~~~~~~ll~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 146 (509)
|..|-..++.. |... |+.+.|.+-...+. + ..+|..++++|.+..++|-|.-.+-.|..
T Consensus 725 d~~TRkaml~FSfyvti--G~MD~AfksI~~Ik------S-~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTI--GSMDAAFKSIQFIK------S-DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEe--ccHHHHHHHHHHHh------h-hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 45555555543 3344 77777766554443 2 67889999999999999988888877762
Q ss_pred --CChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010496 147 --KSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224 (509)
Q Consensus 147 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 224 (509)
.+...-..........|.+++|..+|++.+. |..|=..|...|.|++|+++-+.=-. + .=..||.....-
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--i-HLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--I-HLRNTYYNYAKY 867 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--e-ehhhhHHHHHHH
Confidence 1223333344445678899999999987654 44555678888999999888654322 1 123466666666
Q ss_pred HHccCCHHHHHHHHHHHH----------HcC---------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHH
Q 010496 225 CANVGTLGIGLWIHRYVL----------KQD---------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 285 (509)
+...+|.+.|+++|++.- ... -..+...|..-...+...|+.+.|+.+|.... -|.
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~f 942 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYF 942 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhh
Confidence 777788888888776522 111 02234455556666666777777777777654 355
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH--
Q 010496 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS-- 363 (509)
Q Consensus 286 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-- 363 (509)
.++...|-.|+.++|-++-++ .-|......|.+.|-..|++.+|..+|.++.. +...|+.|.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa----------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA----------FSNAIRLCKEN 1006 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHhc
Confidence 566666677777777776654 22556666788888888888888888887652 222222222
Q ss_pred -------------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----------HHhcCCC-CCc
Q 010496 364 -------------RAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKY----------LVDLDPG-VDS 419 (509)
Q Consensus 364 -------------~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~----------~~~~~~~-~~~ 419 (509)
...+.-.|-++|++.+..- ...+..|-+.|.+.+|+++.=+ +.++++. +|.
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 2223445556666654221 1223346677777777764321 2235555 667
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh----------CCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKG----------RGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSF 489 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (509)
....-+..++...++++|..++-..++ +|++.+..... ++. ...+..++..+...+++++.+
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE-----~mT---p~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE-----LMT---PTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH-----hcC---cCcCCCccHHHHHHHHHHHHH
Confidence 788888889999999999988765543 33332221111 110 112235556666677777777
Q ss_pred HHHHcC
Q 010496 490 DLKLCG 495 (509)
Q Consensus 490 ~m~~~g 495 (509)
-..++|
T Consensus 1154 ~c~qQG 1159 (1416)
T KOG3617|consen 1154 LCLQQG 1159 (1416)
T ss_pred HHHhcc
Confidence 766666
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-05 Score=86.36 Aligned_cols=322 Identities=12% Similarity=0.022 Sum_probs=207.1
Q ss_pred HHHhcCCchHHHHHHHhcCC----CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC----C----C----HhHHHHHHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRV----KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV----R----D----AISWTALLNGF 190 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~----~~~~~~li~~~ 190 (509)
.+...|+++.+...++.+.. .++.........+...|++++|...+..... . + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777776631 1333334445556678899998888765421 1 1 11222334556
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--cHhHHHHHHHHHH
Q 010496 191 VKRGYFEEALECFREMQISGVEPDY----VTIISVLNACANVGTLGIGLWIHRYVLKQDF---KD--NVKVCNTLIDLYS 261 (509)
Q Consensus 191 ~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 261 (509)
...|++++|...+++....-...+. .....+...+...|+++.|...+.+.....- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7889999999999988763111121 2344556667789999999999888775311 11 1235566777888
Q ss_pred hcCCHHHHHHHHHhccC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 010496 262 RCGCIEFARQVFQRMHK-------RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEG--FKPD--GVSFTGALTAC 326 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~~~~~li~~~ 326 (509)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998877542 11 1234455566777899999999998876531 1122 23344455667
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCHH----HHHHHHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHY-----GCIVDLYSRAGRLEDALNVVENMPMK--PNEV----VLGSLLAACR 395 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~l~~~~~ 395 (509)
...|+++.|...+...............+ ...+..+...|+.+.|.+++...... .... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999999988876321111111111 11224455688999999998776311 1111 2345667788
Q ss_pred hcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 396 TKGDIILAERLMKYLVDLDPG------VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
..|++++|...++++...... ...++..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998874221 12356778889999999999999999998754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-05 Score=76.55 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.+..++.+|.++|.+..|-+=|.
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHh
Confidence 46778888888888776665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-05 Score=80.50 Aligned_cols=355 Identities=16% Similarity=0.199 Sum_probs=215.4
Q ss_pred hHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (509)
-+.|..-.-+.++..--+..++...+.|.. |..+++++.+.+... ++..+.. .+. |+.-=+..+.-
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDS--NNnPE~f------Lke-----N~yYDs~vVGk 906 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDS--NNNPERF------LKE-----NPYYDSKVVGK 906 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecC--CCChHHh------ccc-----CCcchhhHHhh
Confidence 344555566677777777778888888855 888899988888776 3333211 111 12222333444
Q ss_pred HHhcCCchHHHHHHHhcCCC--------ChHHHHHHHHHHHhCCCHHHHHHHHhcCC-----------------CCCHhH
Q 010496 128 YAKFGRMDLATVVFDAMRVK--------SSFTWNAMIDGYMRRGDIESAVRMFDEMP-----------------VRDAIS 182 (509)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------~~~~~~ 182 (509)
||..+++..|.-.+++-... ....|-.....+.+..+.+--.+++.+-. ..|+..
T Consensus 907 YCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~ 986 (1666)
T KOG0985|consen 907 YCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEE 986 (1666)
T ss_pred hhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHH
Confidence 55555555554444433211 11233444444455555444444442211 226677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------------
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISG--VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD--------------- 245 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------- 245 (509)
.+..+.++...+-+.+-++++++..-.+ +..+...-+.|+-...+. +...+.++.+++-.-+
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 7777888888888888888888876432 111122222333332222 2233333333333222
Q ss_pred --------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010496 246 --------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317 (509)
Q Consensus 246 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 317 (509)
+..+....+.|++ ..+..++|.++-++.. .+..|..+..+-.+.|...+|++-|-+. -|+.
T Consensus 1066 EAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1066 EAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred HHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 0112222222221 1233444444444443 4567999999999999999999877542 3677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (509)
.|.-++..+.+.|.+++-.+++..+++ ..-.|.+. ..||-+|++.++..+.++++. .||......+..-|...
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhh
Confidence 899999999999999999999988884 34456554 568889999999988877664 47777788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|.++.|.-+|... +.|..|+..+...|++..|...-++
T Consensus 1208 ~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888887777643 3477777777777777776655443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-06 Score=90.40 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=168.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVS 318 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 318 (509)
|-+...|-..+......++.++|+++++++.+. -...|.++++....-|.-+...++|+++.+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556778888899999999999999999988742 2347888888878888888889999998875 212346
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---EVVLGSLLAAC 394 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 394 (509)
|..|...|.+.+..++|.++++.|.++.+ -....|..+++.+.+..+-++|.+++.++ ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888899999999999999999998665 45677999999999999999999999876 44443 44566666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKK 452 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (509)
.+.|+.+.+..+|+..+...|.....|..+++.-.+.|+.+.+..+|++.+..++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8899999999999999999999888999999999999999999999999999988763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-05 Score=76.57 Aligned_cols=347 Identities=14% Similarity=0.076 Sum_probs=213.6
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKF 131 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (509)
+.+-.+...|.+|+.+++.+.... .-..-|..+...|+.. ++++.|.++|.. ...++..+.+|.+.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~--~dfe~ae~lf~e----------~~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANK--GDFEIAEELFTE----------ADLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccc--hhHHHHHHHHHh----------cchhHHHHHHHhcc
Confidence 444556788999999999888753 2344577777888888 999999998743 23456688999999
Q ss_pred CCchHHHHHHHhcCCC--ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 010496 132 GRMDLATVVFDAMRVK--SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209 (509)
Q Consensus 132 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 209 (509)
|+++.|.++-++...| ....|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..+++.++--..
T Consensus 805 ~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 9999999999998877 445677777778899999999999999888863 577899999999999887664321
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh-----hH
Q 010496 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV-----SW 284 (509)
Q Consensus 210 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~ 284 (509)
.-..|...+..-+-..|++..|...|-+.-+ |...+++|...+-|++|.++-+.--..+.. .|
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 1235666777788889999999887755432 566677888888888888876543322211 11
Q ss_pred -------------------HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 010496 285 -------------------NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345 (509)
Q Consensus 285 -------------------~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 345 (509)
..-+...+..+.++-|.++-+-..+.. .|... ..+..-+-..|++++|.+.|-+..+.
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhc
Confidence 111112223334444444443333321 12211 12222345678888887777666532
Q ss_pred cCC-------CCCHHHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 010496 346 YRV-------SPRIEHY---------GCIVDLYSRAGRLEDALNVVENMPMKPN--EVVLGSLLAACRTKGDIILAERLM 407 (509)
Q Consensus 346 ~~~-------~~~~~~~---------~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 407 (509)
... .|+..-. ...+.++.+..+++.|.++-+.-- |+ ..++..-.+.....|++-+|..++
T Consensus 1025 ntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fl 1102 (1636)
T KOG3616|consen 1025 NTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFL 1102 (1636)
T ss_pred ccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhhe
Confidence 111 0111000 012233444445555554444331 22 223444445556667777777665
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 408 KYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
-++ ..|+ ..++-|...+.|.+|+++-+
T Consensus 1103 lra--nkp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1103 LRA--NKPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred eec--CCCc------hHHHHHHHhccChHHHHHHH
Confidence 443 1222 22344556667777766654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.9e-07 Score=78.54 Aligned_cols=184 Identities=11% Similarity=0.016 Sum_probs=125.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---Ch---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TL---VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG--VS 318 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~ 318 (509)
+.....+..++..+...|+++.|...|+++.+. +. .++..+..++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888888899999999998877642 22 35677788888899999999999998875322111 13
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 010496 319 FTGALTACSHA--------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSL 390 (509)
Q Consensus 319 ~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 390 (509)
+..+..++.+. |+.+.|.+.++.+.+.. +-+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44445555543 67788888888887432 222222222211110 00000 0111245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...+...|++.+|...++++++..|..+ ..+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999999877643 57899999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-06 Score=85.31 Aligned_cols=246 Identities=11% Similarity=0.050 Sum_probs=167.5
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH
Q 010496 104 IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDA 180 (509)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 180 (509)
.|.+..-.+++|++...+..|+..+...+++++|.++.+.... | ....|..+...+.+.++...+..+
T Consensus 17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--------- 87 (906)
T PRK14720 17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--------- 87 (906)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh---------
Confidence 3444455577899999999999999999999999999997664 3 333444444466777765544433
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
.++.......++.-+..+...|... .-+...+-.+..+|-+.|+.+++..+|+++++.+ +-|..+.|.+...|
T Consensus 88 ----~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ----NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ----hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 4566666666776666666666663 3455678888999999999999999999999998 88899999999999
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHH
Q 010496 261 SRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV-SFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~ 339 (509)
... ++++|.+++.++. ..+...+++..+.++|.++... .|+.. .|..+ .
T Consensus 161 ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i----------------~ 210 (906)
T PRK14720 161 EEE-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRI----------------E 210 (906)
T ss_pred HHh-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHH----------------H
Confidence 999 9999999988765 3366677888888888888875 33322 22222 2
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010496 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACR 395 (509)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 395 (509)
+.+....+..--+.++..+...|....+++++..+++.+ ...| |.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222211122222344455556666666777777777665 3333 3445555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-06 Score=76.79 Aligned_cols=227 Identities=11% Similarity=0.056 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
++..+-..+...++.++|+.++.++++. .|+ ...|.....++...| ++++++..++++++.+ +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3344444455566666666666666653 332 333444444444444 4566666666666554 4444555544444
Q ss_pred HHhcCCH--HHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC
Q 010496 260 YSRCGCI--EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA---GL 331 (509)
Q Consensus 260 ~~~~g~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~ 331 (509)
+.+.|+. ++++.+++++.+ .+..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 4444432 344444444432 23344444444455555555555555555554322 233333332222221 11
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHh----cCCHHHHHH
Q 010496 332 IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN-MPMKP-NEVVLGSLLAACRT----KGDIILAER 405 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~----~g~~~~a~~ 405 (509)
.+ ...++++++..+ +...| |...|+.+...+.. .++..+|.+
T Consensus 195 ~~--------------------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 195 LE--------------------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred cc--------------------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 10 001233444422 23344 33455555555544 233455666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcC------------------CchHHHHHHHHH
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVG------------------KWDGAGKIRRTM 444 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 444 (509)
.+.++...+|.++.++..|+..|+... ..++|.++++.+
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 666666666666666777777776532 236688888777
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-06 Score=80.94 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=160.1
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA 325 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 325 (509)
.+|--..-..+...+...|-...|..+|+++. .|...+.+|+..|+..+|..+..+-.++ +||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 35555666788899999999999999998865 6777888999999999999999988874 8899999999988
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILA 403 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 403 (509)
.....-+++|+++.+..... .-..+.....+.++++++.+.|+.. .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88877888898888776531 1122223334578999999998764 6666 456888888888899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEE
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHE 466 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 466 (509)
.+.|...+...|++...|+.+..+|.+.|+..+|...+++..+.+.+ .|-.+.+..+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENymlv 596 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYMLV 596 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhhh
Confidence 99999999999999999999999999999999999999998887643 23445544443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-06 Score=73.85 Aligned_cols=146 Identities=11% Similarity=0.111 Sum_probs=107.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 356677777665444322221 11 012235666777777777774 3355788888899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAAC-RTKGD--IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 5566 566777777764 56676 58999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 010496 444 MKGRG 448 (509)
Q Consensus 444 m~~~~ 448 (509)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 97764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0001 Score=73.96 Aligned_cols=359 Identities=11% Similarity=0.115 Sum_probs=199.6
Q ss_pred ccccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHH-----HHHHhhcCCCccchhHHHHHHHH
Q 010496 33 IQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFI-----TLLSGCADFPSQCLFLGAMIHGL 107 (509)
Q Consensus 33 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~ll~~~~~~~~~~~~~a~~~~~~ 107 (509)
.++-..+...|. .-+..+.++...+-+.+-+++++++.- .|++.+=+ .|+-...+ -+.....+..+.
T Consensus 974 v~tal~E~~dPe--~vS~tVkAfMtadLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAik---ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 974 VQTALPETQDPE--EVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAIK---ADRTRVMEYINR 1045 (1666)
T ss_pred HHhcCCccCChH--HHHHHHHHHHhcCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHhh---cChHHHHHHHHH
Confidence 344444444444 445678999999999999999999874 44443322 22222222 233333333333
Q ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC-------------------------CChHHHHHHHHHHHhC
Q 010496 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV-------------------------KSSFTWNAMIDGYMRR 162 (509)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~ 162 (509)
+...+ .|+ +.......+-+++|..+|+.... ..+..|..+..+-.+.
T Consensus 1046 LdnyD-a~~-------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1046 LDNYD-APD-------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hccCC-chh-------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 32221 121 33344445555566655554431 1334566666666666
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010496 163 GDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 163 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (509)
|.+.+|.+-|-+ ..|+..|..+++...+.|.|++-.+++...++..-.|...+ .|+-+|++.+++.+.+++.
T Consensus 1118 ~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred CchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh----
Confidence 666666665533 23555666666666666666666666666655544444332 4555666666665554443
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010496 243 KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA 322 (509)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 322 (509)
.-||......+.+-|...|.++.|.-+|. ++..|..+...+...|.+..|.+.-++. .+..||..+
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~V 1255 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEV 1255 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHH
Confidence 23555555566666666666666665554 3446777777788888888777665543 245677777
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVS--PRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG 398 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 398 (509)
-.+|...+.+.-|. ..|+. ....-...|+..|...|-+++.+.+++.. ++.- ....|+.|.-.|++.
T Consensus 1256 cfaCvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred HHHHhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence 77777766554331 23432 34455677888888888888888888764 4332 233555555555443
Q ss_pred CHHHHHHHHHHHHh-cC-C------CCCchHHHHHHHHHHcCCchHHH
Q 010496 399 DIILAERLMKYLVD-LD-P------GVDSNYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 399 ~~~~a~~~~~~~~~-~~-~------~~~~~~~~l~~~~~~~g~~~~A~ 438 (509)
++++..+.++-.-. .+ | +....|.-+...|.+-..|+.|.
T Consensus 1327 kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 23333332222211 00 1 01234556666666655555543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-08 Score=57.61 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.7
Q ss_pred CCCCCCccchHHHHHHHHcCCChhHHHHHHHHHh
Q 010496 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMT 72 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 72 (509)
+|..||+.+||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999999984
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-06 Score=83.32 Aligned_cols=371 Identities=14% Similarity=0.046 Sum_probs=191.7
Q ss_pred hhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHH
Q 010496 61 IAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATV 139 (509)
Q Consensus 61 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (509)
...|+..|-+..+. .|+ ...|..|...|... .+...|.+.|....+.+ +++........+.|++..+++.|..
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHH
Confidence 45555555555442 222 34566666666666 56667777777666553 5557777777788888888887777
Q ss_pred HHHhcCCCC-----hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 010496 140 VFDAMRVKS-----SFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGV 211 (509)
Q Consensus 140 ~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 211 (509)
+.-..-+.+ ...|....-.|.+.++...|..-|+...+. |...|..+..+|...|++..|+++|.+... +
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--L 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--L 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--c
Confidence 744433321 123334455566777777777777755433 566677788888888888888888877766 3
Q ss_pred CCCHhHHHHH--HHHHHccCCHHHHHHHHHHHHHcC------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----
Q 010496 212 EPDYVTIISV--LNACANVGTLGIGLWIHRYVLKQD------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK----- 278 (509)
Q Consensus 212 ~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 278 (509)
.|+. +|... ....+..|.+.++...+...+... ...-..++-.+...+.-.|-..+|..++++-.+
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4543 22222 223466777777777777665431 111122333333333333444444444433221
Q ss_pred ------CChhhHHHHHHHHH---hCC--Ch-HHHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHH
Q 010496 279 ------RTLVSWNSIIVGFA---VNG--FV-GEALEYF-NSMQKEGFKP--------------------DGVSFTGALTA 325 (509)
Q Consensus 279 ------~~~~~~~~l~~~~~---~~~--~~-~~A~~~~-~~m~~~g~~p--------------------~~~~~~~li~~ 325 (509)
.+...|-.+..+|. ... -+ .....++ .+....+.-| +..+|..|+..
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 11122222221111 100 00 0000000 1111111111 11222222222
Q ss_pred Hhc----c----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010496 326 CSH----A----GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACR 395 (509)
Q Consensus 326 ~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 395 (509)
|.+ . .+...|+..+++..+. ..-+...|+.|.-. ...|.+.-|...|-+. -..| ...+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEE
Confidence 221 0 1122444555544421 11233344444332 4445555555444333 2233 3446666666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
...+++.|...|.+...+.|.+...|.-.+......|+.-++..+|..
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777766666677777777777765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-06 Score=84.13 Aligned_cols=220 Identities=15% Similarity=0.082 Sum_probs=150.2
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC--------ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-C-HhHHH
Q 010496 115 RNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK--------SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-D-AISWT 184 (509)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 184 (509)
|++...|-.-|....+.++.++|++++++.... -...|.++++.-..-|.-+...++|++..+- | -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 666777777777778888888888888877632 2346777777766677777777777776554 3 33567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHh
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD--NVKVCNTLIDLYSR 262 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 262 (509)
.|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++.- |. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 7778888888888888888888765 33456677777777788888788888887777652 22 34455556666677
Q ss_pred cCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHH
Q 010496 263 CGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV--SFTGALTACSHAGLIEDGL 336 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~ 336 (509)
.|+.+++..+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-.. .|...+..--+.|+-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 78888877777776633 45678888888788888888888888877776665432 3444444333344443333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00027 Score=76.19 Aligned_cols=323 Identities=10% Similarity=0.002 Sum_probs=202.3
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCChH--HHHHHHHHHHhCCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHHcCChHH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKSSF--TWNAMIDGYMRRGDIESAVRMFDEMPV----RDAISWTALLNGFVKRGYFEE 198 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 198 (509)
...+...|++.+|............. ........+...|+++.+..++..+.. .++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34445556666555555444333111 112223345567888888888887742 133334445566678899999
Q ss_pred HHHHHHHHHHcC--C----CCCH--hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCH
Q 010496 199 ALECFREMQISG--V----EPDY--VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN----VKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 199 A~~~~~~m~~~~--~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 266 (509)
|..++......- . .+.. .....+...+...|+++.|...+++..+.-...+ ....+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 999998875431 0 1111 1222233456789999999999998876421112 23456677778889999
Q ss_pred HHHHHHHHhccC-------CC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccC
Q 010496 267 EFARQVFQRMHK-------RT--LVSWNSIIVGFAVNGFVGEALEYFNSMQKE----GFK--P-DGVSFTGALTACSHAG 330 (509)
Q Consensus 267 ~~a~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~~ 330 (509)
++|...+++... +. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999888752 11 134455667788899999999998886652 211 1 1233444555667789
Q ss_pred CHHHHHHHHHHhHHhcC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHH-----HHHHHHHHhcC
Q 010496 331 LIEDGLRYFDIMKKIYR-VSP--RIEHYGCIVDLYSRAGRLEDALNVVENMP----MKPNEVVL-----GSLLAACRTKG 398 (509)
Q Consensus 331 ~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~-----~~l~~~~~~~g 398 (509)
++++|...+.+...... ..+ ....+..+...+...|++++|.+.+.+.. .......+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999999988763211 112 23345556677888999999998887751 11111111 11123445688
Q ss_pred CHHHHHHHHHHHHhcCCCCCch----HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 399 DIILAERLMKYLVDLDPGVDSN----YVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+.|.+.+.......+..... +..++.++...|++++|...+++....
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999987765532222211 457888899999999999999988654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.4e-05 Score=69.33 Aligned_cols=209 Identities=11% Similarity=0.033 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010496 151 TWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRG-YFEEALECFREMQISGVEPDYVTIISVLNACA 226 (509)
Q Consensus 151 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 226 (509)
++..+-..+...++.++|+.+...+... +..+|+....++...| ++++++..++++.+.+ +-+..+|......+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4555666677788999999999988654 4455666666777777 5799999999999864 335556665555566
Q ss_pred ccCCH--HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhC---CCh-
Q 010496 227 NVGTL--GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVN---GFV- 297 (509)
Q Consensus 227 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~---~~~- 297 (509)
+.|+. +.+..+++++++.+ +.+..+|+...-++...|+++++++.++++.+. +..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 66653 67889999999887 788999999999999999999999999998753 567787777666554 222
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 010496 298 ---GEALEYFNSMQKEGFKPDGVSFTGALTACSHA----GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR 364 (509)
Q Consensus 298 ---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 364 (509)
++++....+++... +-|...|+.+...+... +...+|..++.++.+ .-+.+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 45666666666652 23555666666666552 344557777777652 123345666777777764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-06 Score=84.22 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=136.8
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 010496 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC 357 (509)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 357 (509)
.++..+..|.....+.|.+++|+.+++...+. .|+. .....+...+.+.+++++|...+++... .-+-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 35778888888888888888888888888875 5554 4556677788888888888888888884 33345667777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
+..++.+.|++++|.++|+++ ...|+ ..++..+..++...|+.++|...|+++++...+-...|+.++. +..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 888888888888888888887 34444 6688888888888888888888888888866554444444332 233
Q ss_pred HHHHHHHHHHhCCCccCCcccEEEECCEEE---------------------EEecCCCCCCchHHHHHHHHHHHHHHHHc
Q 010496 436 GAGKIRRTMKGRGIQKKPGLSSIEIGSGIH---------------------EFMAGDRSHIESEHIYSMLELLSFDLKLC 494 (509)
Q Consensus 436 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 494 (509)
.-...++++.-.+......+..+.++..+. .++.... ........+-.+...+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIl~vi~sl---~~GGAEr~~~~La~~l~~~ 310 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPVLMINGSL---GAGGAERQFVNTAVALQSA 310 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCcceEEEEeCCC---CCCcHHHHHHHHHHHHHhc
Confidence 334555555444333222222222211111 1122211 2235556777777888888
Q ss_pred CccCC
Q 010496 495 GYVPE 499 (509)
Q Consensus 495 g~~pd 499 (509)
++.|+
T Consensus 311 ~~~~~ 315 (694)
T PRK15179 311 IQQGQ 315 (694)
T ss_pred ccCcc
Confidence 77655
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-06 Score=81.89 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHcCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMP--VRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~ 195 (509)
...-..+...+...|-...|..+|+++ ..|...+..|...|+-.+|..+..+.. ++++..|..+.+......-
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 344556777888888888888888875 457777888888888888888776554 3477788888887777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +.-..+|..+..++.+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88888887765432 11112222334688888888888887776 66778888888888888899888888887
Q ss_pred cc--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH
Q 010496 276 MH--KR-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI 352 (509)
Q Consensus 276 ~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (509)
.. +| +...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+.|.+++|++.+.++........|.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 66 33 4568888989999999988999988888886533 33445555556678888898888888877533333354
Q ss_pred HHHHHHHHHHHh
Q 010496 353 EHYGCIVDLYSR 364 (509)
Q Consensus 353 ~~~~~li~~~~~ 364 (509)
.+...++....+
T Consensus 624 ~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 624 EVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHHHHHh
Confidence 455555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-06 Score=68.59 Aligned_cols=121 Identities=9% Similarity=0.007 Sum_probs=72.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
.++++.++. .|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3332 33445556666777777777766662 22235566666666666677777777666665 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 381 KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 381 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
.| +...+..+..++...|++++|...|+++++..|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 4556666666666777777777777777777776666665555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=70.54 Aligned_cols=108 Identities=11% Similarity=-0.062 Sum_probs=92.7
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 336 LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
..++++.. .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++.
T Consensus 13 ~~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34556655 234543 556788889999999999999987 5566 6778999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 414 DPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+|.++..+..++.++.+.|++++|+..|++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0004 Score=65.18 Aligned_cols=78 Identities=8% Similarity=-0.034 Sum_probs=51.0
Q ss_pred CCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC--ChHHHHH
Q 010496 77 NPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK--SSFTWNA 154 (509)
Q Consensus 77 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 154 (509)
+-|..+|+.|++-+.. ...+..++.++++... .|..+..|..-+..-.+.++++..+++|.+.... +...|..
T Consensus 17 P~di~sw~~lire~qt---~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT---QPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHcc---CCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 3366777777765433 4566777777766544 4666777777777777777777777777776543 5566666
Q ss_pred HHHHH
Q 010496 155 MIDGY 159 (509)
Q Consensus 155 l~~~~ 159 (509)
.++.-
T Consensus 92 Yl~YV 96 (656)
T KOG1914|consen 92 YLSYV 96 (656)
T ss_pred HHHHH
Confidence 65543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.6e-06 Score=72.23 Aligned_cols=180 Identities=14% Similarity=0.064 Sum_probs=126.7
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHHhccCC---Chh---hH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV---KVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLV---SW 284 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---~~ 284 (509)
....+..+...+...|+++.|...++++.... |.+. .++..+..++...|++++|...++++.+. +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45667788888999999999999999998865 3332 46788899999999999999999998643 222 45
Q ss_pred HHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 285 NSIIVGFAVN--------GFVGEALEYFNSMQKEGFKPDGV-SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 285 ~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
..+..++... |++++|.+.|+.+... .|+.. ....+... .. . ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HHH
Confidence 5556666654 7889999999999886 44432 22222111 00 0 00000 112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 356 GCIVDLYSRAGRLEDALNVVENM-PMK---P-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
..+...|.+.|++.+|...+++. ... | ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788899999999888876 222 3 245788888899999999999998888876654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-05 Score=63.62 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH----A 329 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 329 (509)
..-...|+..|++++|++...... +....-.=...+.+..+.+-|.+.+++|... -+..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 333444555555555555554421 2222222223334444555555555555542 133444444443332 2
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
+.+.+|.-+|+++.+ ..+|+..+.+....++...|++++|..++++.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 234444444554442 23444444444444444444444444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-05 Score=67.49 Aligned_cols=155 Identities=13% Similarity=0.128 Sum_probs=113.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 256 LIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
.+-.|...|+++.+....+.+..+. ..+...++.+++...++..++.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456677777776655443332221 01223566778888888877763 45777888888999999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 336 LRYFDIMKKIYRVSPRIEHYGCIVDL-YSRAGR--LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
...|++..+ -.+.+...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|...|+++
T Consensus 93 ~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 223367778888876 467777 58999999887 5566 5668888888999999999999999999
Q ss_pred HhcCCCCCchH
Q 010496 411 VDLDPGVDSNY 421 (509)
Q Consensus 411 ~~~~~~~~~~~ 421 (509)
++..|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99888865444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-05 Score=67.60 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=110.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 010496 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR 364 (509)
Q Consensus 285 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 364 (509)
..+-..+...|+-+....+..+.... .+-|.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455566667777766666665442 223444555567777778888888888887773 445677778888888888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 365 AGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.|++++|..-|.+. .+.| +...++.+...+.-.|+.+.|..++.......+.+..+-..++.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888887777665 4555 455777777777788888888888888877777777777888888888888888877654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-05 Score=65.40 Aligned_cols=245 Identities=11% Similarity=0.133 Sum_probs=156.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
++-+.-.|++..++..-...... +-+...-..+.++|...|.+..... ++.. +-.+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchh
Confidence 34455567777776665554433 1333444445566666665443322 1111 1123333444444433334443
Q ss_pred HHHH-HHHHhccCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 267 EFAR-QVFQRMHKR----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 267 ~~a~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
+.-. ++.+.+..+ +......-...|+..|++++|++...... ....... =+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3332 233333322 22233334456889999999999988622 2222222 23446677889999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
|.+ + .+..+.+-|..++.+ .+.+.+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 984 2 344556656666554 46788999999999 4789999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHH-HHHHHHHHhC
Q 010496 416 GVDSNYVLLANMYAAVGKWDGA-GKIRRTMKGR 447 (509)
Q Consensus 416 ~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~ 447 (509)
.++.+...++.+-...|.-.++ .+.+.+++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999888888887654 4456666543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-05 Score=66.17 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALL 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 187 (509)
.|.+..+ ..+...+...|+-+....+...... .|......++....+.|++..|...|++... +|..+|+.+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 3443444 4445555555555555555444321 1333333344444555555555555544332 2444555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
-+|.+.|+++.|..-|.+..+.. .-+...++.+.-.+.-.|+++.|..++......+ +-+..+-..+..+....|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 55555555555555555444421 1123334444444444455555555544444433 234444444444444445544
Q ss_pred HHHHHH
Q 010496 268 FARQVF 273 (509)
Q Consensus 268 ~a~~~~ 273 (509)
+|..+.
T Consensus 220 ~A~~i~ 225 (257)
T COG5010 220 EAEDIA 225 (257)
T ss_pred HHHhhc
Confidence 444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-05 Score=69.47 Aligned_cols=135 Identities=14% Similarity=0.177 Sum_probs=73.6
Q ss_pred HHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHH
Q 010496 159 YMRRGDIESAVRMFDEMPV--R-DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a 234 (509)
+...|++++|+..++.+.. | |+..+......+.+.|+..+|.+.++.+... .|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445556666665555432 2 4445555555666666666666666666553 344 33334445556666666666
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
..+++...... +.++..|..|.++|...|+..++..... ..+...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA--------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 66666555554 5555566666666666665555544332 2344556666666555555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-05 Score=78.56 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=91.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA 325 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 325 (509)
+..++..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|++++.+.+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 334555666666666666666666666553 2445566666666666 666666666655443
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
+...+++..+..+|.++.. ..+.+...+..+.+..... .+..--..++.-+-..|...++++++..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 3444456666666666662 1122222222222222111 1222233455556667788889999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHH
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
+++.+++.+|++..+..-++.+|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999888888888887
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-07 Score=52.87 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=19.5
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 245 DFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
|++||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.002 Score=64.41 Aligned_cols=390 Identities=15% Similarity=0.145 Sum_probs=224.8
Q ss_pred HHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 010496 54 RHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR 133 (509)
Q Consensus 54 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (509)
.....+++..|+....++.++ .|+. .|..++.++.....|..++|..+++.....+ +++..+...+-.+|...|+
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhh
Confidence 345678999999999998874 4443 4666777765443388888887777666554 4468999999999999999
Q ss_pred chHHHHHHHhcCCC--ChHHHHHHHHHHHhCCCHH----HHHHHHhcCCCCCHhHHHHHHHHHHHcC-C---------hH
Q 010496 134 MDLATVVFDAMRVK--SSFTWNAMIDGYMRRGDIE----SAVRMFDEMPVRDAISWTALLNGFVKRG-Y---------FE 197 (509)
Q Consensus 134 ~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~~-~---------~~ 197 (509)
.++|..++++..+. +......+..+|.|.+.+. .|.++++..++. +..+-++++.+.+.- . ..
T Consensus 93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999864 5455556667777777664 577777766543 444444555444321 1 23
Q ss_pred HHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccCCHHHHHHHH-HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 198 EALECFREMQISGVEP-DYVTIISVLNACANVGTLGIGLWIH-RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
-|...++.+.+.+-+. +..-...-...+...|++++|..++ ....+.-...+...-+.-++.+...++|++..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566665543111 2222222344556778899999988 3444443345555566778888888888888777777
Q ss_pred ccCCChhhHHHHHHHHH----------------hCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHH-
Q 010496 276 MHKRTLVSWNSIIVGFA----------------VNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLR- 337 (509)
Q Consensus 276 ~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~- 337 (509)
+...+..-|...+..+. ..+..+...+..++..... -.|-...+. +..-+-..|+.+++..
T Consensus 252 Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le-l~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 252 LLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE-LDKRYKLIGDSEEMLSY 330 (932)
T ss_pred HHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH-HHHHhcccCChHHHHHH
Confidence 65432221333222111 1122233333333322221 111111111 1111122344444322
Q ss_pred -----------------------------HHHHhHHhcCCCCCHH-------HHHHHHHHHHhcCC-----hHHHHHHHH
Q 010496 338 -----------------------------YFDIMKKIYRVSPRIE-------HYGCIVDLYSRAGR-----LEDALNVVE 376 (509)
Q Consensus 338 -----------------------------~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~-----~~~A~~~~~ 376 (509)
++.... +..++.. .+...+..-.-.|. -+.-..++.
T Consensus 331 y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~ 407 (932)
T KOG2053|consen 331 YFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVR 407 (932)
T ss_pred HHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHH
Confidence 222222 1111111 01111111122221 112222222
Q ss_pred hC------C------CCCCH---------HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 377 NM------P------MKPNE---------VVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 377 ~~------~------~~p~~---------~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+. + .-|.. -+.+.|+..+.+.++ +-+|+-+++......|.+...-..+++.|+-.|
T Consensus 408 kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lG 487 (932)
T KOG2053|consen 408 KLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLG 487 (932)
T ss_pred HHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhc
Confidence 21 1 11221 145667788888876 456777888888888988888889999999999
Q ss_pred CchHHHHHHHHHHhCCCccCC
Q 010496 433 KWDGAGKIRRTMKGRGIQKKP 453 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~~~~ 453 (509)
-+..|.++|+.|.-+.++.+.
T Consensus 488 a~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 488 AFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred CChhHHHHHHhcchHHhhhcc
Confidence 999999999999777766543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-06 Score=65.67 Aligned_cols=119 Identities=10% Similarity=-0.095 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
....-.+...+...|++++|..+|+-. .+.| +..-|..|.-++-..|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344555666778899999999999987 5566 56688889999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHH
Q 010496 430 AVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKL 493 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 493 (509)
..|+.+.|.+.|+..+...- .+|+...+....+.+++.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999998877531 156666666777777666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.3e-05 Score=75.33 Aligned_cols=393 Identities=11% Similarity=-0.011 Sum_probs=241.2
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.|..|...|+...+...|...|+...+.+ .-+......+...+++. .+.+.|..+.-..-+......-...|..+.-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~--~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE--STWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc--ccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 67888888888888899999999988743 22566677788888888 8999998884444333221111233444555
Q ss_pred HHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHH---HHHHHHHHHcCChHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISW---TALLNGFVKRGYFEEAL 200 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~ 200 (509)
.|.+.+++..|+.-|+....- |...|..+..+|.+.|++..|.++|.+...-++..+ .-.....+..|.+.+|+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 677889999999999987643 667888899999999999999999977655433322 22334456788999999
Q ss_pred HHHHHHHHcC------CCCCHhHHHHHHHHHHccCCHHHHHHHHHH-------HHHcCCCCcHhHHHHHHHHHHh-----
Q 010496 201 ECFREMQISG------VEPDYVTIISVLNACANVGTLGIGLWIHRY-------VLKQDFKDNVKVCNTLIDLYSR----- 262 (509)
Q Consensus 201 ~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~----- 262 (509)
..+....... ..--..++..+...+...|-..++..+++. ........+...|-.+.+++.-
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 8888775431 111122333333333333333333333332 2222212222222222222111
Q ss_pred ------------------cCCH---H---HHHHHHHhcc--CCChhhHHHHHHHHHh--------CCChHHHHHHHHHHH
Q 010496 263 ------------------CGCI---E---FARQVFQRMH--KRTLVSWNSIIVGFAV--------NGFVGEALEYFNSMQ 308 (509)
Q Consensus 263 ------------------~g~~---~---~a~~~~~~~~--~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~m~ 308 (509)
.+.. + -+.+.+-.-. -.+..+|..++..|.+ ..+...|+..+.+.+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 1110 0 0001110000 0134456666555443 223457888888888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 010496 309 KEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVV 386 (509)
Q Consensus 309 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 386 (509)
+.. .-+..+|+.|. .....|++.-+...|-+-.. ..+....+|..+...+.+..+++.|...|... .+.| |...
T Consensus 811 ~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~ 886 (1238)
T KOG1127|consen 811 SLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQ 886 (1238)
T ss_pred HHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHH
Confidence 752 33555666554 45777888888877766652 33446778999999999999999999999988 4666 5567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPG-----VDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
|..........|+.-++..+|..--+.... .-..|.+........|+.++-+...+++-.
T Consensus 887 WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 766666667889999999998874443322 112344555556677887777776665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00016 Score=61.24 Aligned_cols=167 Identities=17% Similarity=0.242 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNS---IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 329 (509)
|..++-+....|+.+.|..+++.+...-+.++.. -.-.+-..|++++|+++|+.+++.. +.|..++..-+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 4444555556666666666666655322221111 1122345678888888888888764 34556666555566667
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHH
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG---DIILAE 404 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~a~ 404 (509)
|+.-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -..| +...+..+...+.-.| +.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888875 56678899999999999999999999999887 3556 4445555555544333 678888
Q ss_pred HHHHHHHhcCCCCCchHH
Q 010496 405 RLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~ 422 (509)
++|.+++++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999886544433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00023 Score=66.16 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=83.8
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILA 403 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 403 (509)
+...|.++.|+..+..+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4456777778877777774 33445666666677777888888888877776 55665 44566667777788888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
+.+++.....+|.++..|..|+++|...|+..+|.....+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888877778777778888777777777666666555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.7e-06 Score=65.39 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
......+...+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 445556666777778888887777775 3334 55677777777778888888888888888888887778888888888
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010496 430 AVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~ 447 (509)
..|++++|.+.|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.003 Score=59.57 Aligned_cols=388 Identities=13% Similarity=0.102 Sum_probs=214.3
Q ss_pred CCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
+..+-|+.+|+.||+-+-.+ ..+++.+.++++.. +-|+ ...|..-+..-... .+++....+|.+.+..-+.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLn--- 85 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKVLN--- 85 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhh---
Confidence 34556889999999887666 99999999999986 4554 45666667766666 8888888888887766443
Q ss_pred hHHHHHHHHHHHh-cCCchH----HHHHHHhcCC------CChHHHHHHHHH---------HHhCCCHHHHHHHHhcCCC
Q 010496 118 VMVGTALLDMYAK-FGRMDL----ATVVFDAMRV------KSSFTWNAMIDG---------YMRRGDIESAVRMFDEMPV 177 (509)
Q Consensus 118 ~~~~~~l~~~~~~-~g~~~~----A~~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~ 177 (509)
...|..-+.---+ .|+... ..+.|+-... .+...|+..+.- |....+++...+++.++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 3344443332211 233222 2222322221 133344444432 3344566667777766642
Q ss_pred C----------CHhHHHHHHHHH-------HHcCChHHHHHHHHHHHHc--C----------------------------
Q 010496 178 R----------DAISWTALLNGF-------VKRGYFEEALECFREMQIS--G---------------------------- 210 (509)
Q Consensus 178 ~----------~~~~~~~li~~~-------~~~~~~~~A~~~~~~m~~~--~---------------------------- 210 (509)
. |-..|..=|... -+...+..|.++++++... |
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 1 111111111100 1112233333333333211 1
Q ss_pred -------------------------------CCCCHhHH-HH----HHHHHHccCC-------HHHHHHHHHHHHHcCCC
Q 010496 211 -------------------------------VEPDYVTI-IS----VLNACANVGT-------LGIGLWIHRYVLKQDFK 247 (509)
Q Consensus 211 -------------------------------~~p~~~~~-~~----l~~~~~~~~~-------~~~a~~~~~~~~~~~~~ 247 (509)
..|+.... .. .-+.+...|+ .+++..+++..+..-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11111000 00 0011111222 23444444444433222
Q ss_pred CcHhHHHHHHHHHHhcC---CHHHHHHHHHhccC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHH
Q 010496 248 DNVKVCNTLIDLYSRCG---CIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSF 319 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 319 (509)
.+..+|..+...--..- +.+.....++++.. .-..+|-..++.-.+....+.|..+|.+..+.+..+ +....
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 23333333332221111 24444444444432 233567777887788888888999999988887777 56677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPN--EVVLGSLLAAC 394 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~ 394 (509)
.+++.-+|. ++...|.++|+.-.+.+|- +..--...++-+...++-..+..+|++. .+.|+ ...|..++.--
T Consensus 406 ~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 406 AALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 777776664 7888888998887764443 3333456677778888888888888887 23443 45888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--C--CchHHHHHHHHHHcCCchHH
Q 010496 395 RTKGDIILAERLMKYLVDLDPG--V--DSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~A 437 (509)
..-|+...+.++-++....-|. . ...-..++.-|.-.+.+..-
T Consensus 483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 8889998888888887776652 1 12344455556555554433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-05 Score=73.09 Aligned_cols=124 Identities=12% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTL 231 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 231 (509)
...++..+...++++.|.++|+++.+.++.....+++.+...++-.+|.+++++..+.. +-+...+......+.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455556666777777777777777666666667777777777777777777777542 33555555556667777777
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
+.|+++.+++.+.. |.+..+|..|..+|...|+++.|+..+..+.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777764 5556677777777777777777777777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=51.00 Aligned_cols=35 Identities=31% Similarity=0.581 Sum_probs=33.0
Q ss_pred cchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCc
Q 010496 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNH 80 (509)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 80 (509)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.003 Score=58.34 Aligned_cols=376 Identities=12% Similarity=0.077 Sum_probs=200.6
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCccc------HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 010496 55 HCRSGRIAEAALEFTRMTLHGTNPNHIT------FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMY 128 (509)
Q Consensus 55 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~------~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (509)
+-+++++.+|..+|.+..+. +..+... -+.++.++.. .+.+..........+.. |..+..---..-.+
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl---~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL---NNLDLMEKQLMELRQQF--GKSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 34678999999999998764 2323222 3345555544 55666555555555543 32233222223345
Q ss_pred HhcCCchHHHHHHHhcCCC-----------------Ch-HHHHHHHHHHHhCCCHHHHHHHHhcCCCC--------CHhH
Q 010496 129 AKFGRMDLATVVFDAMRVK-----------------SS-FTWNAMIDGYMRRGDIESAVRMFDEMPVR--------DAIS 182 (509)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~-----------------~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 182 (509)
.+.+++++|.+.+...... +. ..=+..+..+...|++.+++.+++++.+. +..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 6789999999988766521 11 11234567788999999999999887532 7788
Q ss_pred HHHHHHHHHHc--------C-------ChHHHHHHHHHHHHc------CCCCCHhHHHHHHHHHHccC--CHHHHHHHHH
Q 010496 183 WTALLNGFVKR--------G-------YFEEALECFREMQIS------GVEPDYVTIISVLNACANVG--TLGIGLWIHR 239 (509)
Q Consensus 183 ~~~li~~~~~~--------~-------~~~~A~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~ 239 (509)
|+.++-.+.+. . .++.+.-+..+|... .+.|.......++....-.. +..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88755444332 1 123333333333221 12344333444443332211 1222233333
Q ss_pred HHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhcc--------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 240 YVLKQDFKDNVK-VCNTLIDLYSRCGCIEFARQVFQRMH--------KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 240 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
.....-+.|+-. +...+..-+.. +.+++..+-+.+. +.=+.++..++....+.++...|.+.+.-+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333333322 22233333322 2233322222221 122334555555555555555555555444332
Q ss_pred CCCCCHH---------------------HH------------------------HHHHH---HHhccCC-HHHHHHHHHH
Q 010496 311 GFKPDGV---------------------SF------------------------TGALT---ACSHAGL-IEDGLRYFDI 341 (509)
Q Consensus 311 g~~p~~~---------------------~~------------------------~~li~---~~~~~~~-~~~a~~~~~~ 341 (509)
.|+.. .+ ..|+. -+-+.|. -++|..+++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 11111 11 11111 1223343 6677777777
Q ss_pred hHHhcCCCC-CHHHHHHHHH----HHHhc---CCh---HHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHH
Q 010496 342 MKKIYRVSP-RIEHYGCIVD----LYSRA---GRL---EDALNVVENMPMKP----NEVVLGSLLAA--CRTKGDIILAE 404 (509)
Q Consensus 342 ~~~~~~~~~-~~~~~~~li~----~~~~~---g~~---~~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~ 404 (509)
+.+ +.+ |..+-+.+.. .|... ..+ -+-..++++.++.| +...-|.|..+ +...|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 773 222 3333332221 22211 111 12233444555554 44566777665 56899999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
-.-..+.+..| ++.+|..++.++....++++|..++..+
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999999 7789999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=50.48 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP 78 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 78 (509)
+.+||.+|.+|++.|+++.|..+|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00018 Score=72.94 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHhcCCchHHH-HHHHhcCCCChHHHHHHHHHHHhCCC----HHHHHHHHhcCCCCCHhHHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLAT-VVFDAMRVKSSFTWNAMIDGYMRRGD----IESAVRMFDEMPVRDAISWTALLNGFVK 192 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~li~~~~~ 192 (509)
+.....+=.+...-|.-++|- +++.+.. .++....+... +.++.++.+... .++.++-.|.....+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~ 98 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQAR--------QVLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALEA 98 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHH--------HHHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 555555555566666666663 3333321 12222222222 223333333322 258888889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 193 RGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
.|.+++|..+++...+. .|+ ......++.++.+.+++++|....++..... +-+......+..++.+.|++++|.+
T Consensus 99 ~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred cCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999884 565 5566777888999999999999999999887 7778888889999999999999999
Q ss_pred HHHhccCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---
Q 010496 272 VFQRMHKRT---LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI--- 345 (509)
Q Consensus 272 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 345 (509)
+|+++..++ ..++..+..++...|+.++|...|++..+. ..|....|+..+. +...-..+++++.-+
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 248 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLGVEGDG 248 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcCccccc
Confidence 999988543 567888888888999999999999998875 3445555554442 333344555555411
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 010496 346 YRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~ 365 (509)
.+.+..+......|..|.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 249 RDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred CCCceeeeeHHHHHHHHhhc
Confidence 12222334445555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.3e-05 Score=70.35 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL 331 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 331 (509)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++.+.. .+-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34556667777888999999999998888888888888888888889999999998875 23355556566667888999
Q ss_pred HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 010496 332 IEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENMPMKP 382 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 382 (509)
++.|..+.+++.+ ..| +..+|..|..+|...|++++|+-.++.++..+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999984 345 56789999999999999999999999885443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.005 Score=56.78 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHH-HHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH-YGCIVD 360 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~ 360 (509)
+|...+....+....+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-.... ||... -+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 56666777777777888888888888877 5667777777777555 477778888887766322 33322 344556
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 361 LYSRAGRLEDALNVVENM--PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
-+.+.++-+.|..+|+.. ++..+ ...|..++.--..-|+...+..+-+++.+.-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 667778888888888755 22223 457777887777788888888877777777665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00032 Score=59.46 Aligned_cols=163 Identities=12% Similarity=0.132 Sum_probs=128.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA-LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
.|..++-+....|+.+.|..+++++... + |.+.-...+ .--+-..|++++|+++++.+.+ .-+-|..++-.-+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 3455566677789999999999998886 3 444322222 2224567999999999999995 224567777777777
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC---CchH
Q 010496 362 YSRAGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG---KWDG 436 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 436 (509)
....|+.-+|++-+... .+..|...|..+...|...|++++|.-.+++++-..|.++..+..++..+.-.| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888888877665 466799999999999999999999999999999999999999999999877665 4667
Q ss_pred HHHHHHHHHhCCC
Q 010496 437 AGKIRRTMKGRGI 449 (509)
Q Consensus 437 A~~~~~~m~~~~~ 449 (509)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8899988877654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.1e-05 Score=59.13 Aligned_cols=113 Identities=7% Similarity=0.041 Sum_probs=85.0
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 303 YFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 303 ~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
.|++.... .|+ ......+...+...|++++|...++.+.+ ..+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 343 34455666777888999999999988874 22446777888888888889999999888876 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 381 KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 381 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.| +...+..+...+...|++++|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 4667777888889999999999999999998887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00026 Score=57.21 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HhHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPD---YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN--VKVCNTL 256 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 256 (509)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+. ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3666777777777776652 222 12223344566677777777777777776552222 2234445
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC--ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 257 IDLYSRCGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
..++...|++++|+..++....+ ....+......+...|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666777777777777665432 233455556666667777777666664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=59.00 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 402 (509)
.++...+...++.+.+.++-.+ .......+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555666554222111 1223333445555666666666666555 112222 133344555666666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 403 AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|+..++... ..+-.+..+...+.+|.+.|++++|...|++
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665421 1122334556666666667777777666654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00026 Score=64.24 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=106.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCCHHHH-----------
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT--ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY----------- 355 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 355 (509)
.++...|++++|...--..++.. ++ ..+..+++ ++--.++.+.+...|++.. ...|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 35566788888887777666642 11 12222333 2334677888888888777 334442221
Q ss_pred --HHHHHHHHhcCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 356 --GCIVDLYSRAGRLEDALNVVENM-PM-----KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 356 --~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
..=..-..+.|++.+|.+.+.+. .+ +|+...|.....+..+.|+..+|+.-.+.+..+++.....|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 11122345778899999988776 43 44566777777788889999999999999999888877788888888
Q ss_pred HHHcCCchHHHHHHHHHHhCC
Q 010496 428 YAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+.-.++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998877654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.7e-05 Score=55.34 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+..+...+...|++++|..++++. ...|+ ...+..+...+...|++++|.+.++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888775 44443 3567777778888889999999999998888887778888889999999
Q ss_pred CchHHHHHHHHHHhC
Q 010496 433 KWDGAGKIRRTMKGR 447 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~ 447 (509)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.03 E-value=9e-05 Score=57.57 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV---DSNYVLLAN 426 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 426 (509)
+..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|++++|...++.+....|.+ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555555666666666666554 22222 2344445566666666666666666666655553 334566666
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 010496 427 MYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=46.94 Aligned_cols=33 Identities=48% Similarity=0.870 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPD 214 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 214 (509)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=46.36 Aligned_cols=33 Identities=39% Similarity=0.593 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEP 213 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 213 (509)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.1e-05 Score=54.22 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHhC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG-KWDGAGKIRRTMKGR 447 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 447 (509)
+..+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999987653
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=67.97 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=59.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDII 401 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 401 (509)
..+...|+++.|+..|+++.+ ..+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556667777777766663 12234555666666666666666666666665 3444 3445666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHH
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLL 424 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l 424 (509)
+|...|+++++.+|.++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666666666665544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=55.24 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLL 391 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 391 (509)
++..+...+.+.|++++|...|+.+.+...-.+ ....+..+..++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455566667777777777777764322111 1344555677777777777777777765 22333 34566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
.++...|+.++|...++++++..|.++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888777654433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.8e-06 Score=59.61 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|++++++
T Consensus 29 ~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 29 YNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3344455555555555555554 333333333333445555555555555555543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-05 Score=45.10 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=28.9
Q ss_pred cchHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 010496 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGT 76 (509)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 76 (509)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.3e-05 Score=65.39 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=73.6
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-VVLGSLLAACRTKGDII 401 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~ 401 (509)
-+.+.+++.+|+..|.+++ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4667788888888888888 3344 5666777778888888888888777665 666653 48888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCchHHHH
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLL 424 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l 424 (509)
+|++.|+++++++|.+......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 88888888888888876443333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.01 Score=59.50 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=50.6
Q ss_pred hCCCHHHHHHHHhcCCCCCH-hHHHHHHH--HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 010496 161 RRGDIESAVRMFDEMPVRDA-ISWTALLN--GFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~~~-~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
..+++.+|......+.++.+ ..|...+. ...+.|+.++|..+++.....+.. |..|...+-.+|...+..++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 34555555555554433211 11222222 234555566666555555443322 455555555555666666666666
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
|+...+.. |+......+..+|.+.+.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHH
Confidence 66555542 33444445555555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.3e-05 Score=52.45 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+...+...|++++|.+.|+++++..|.++..+..++.++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999998889999999999999999999999988764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00024 Score=59.37 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
...+..+...+...|++++|...+++. ...|+ ...+..+...+.+.|++++|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666666777777777777665 22222 3467777777888888888888888888888877777777788
Q ss_pred HHHHcCC
Q 010496 427 MYAAVGK 433 (509)
Q Consensus 427 ~~~~~g~ 433 (509)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8777666
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00021 Score=62.23 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGR 367 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 367 (509)
.-+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+... .+.|. ..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 45678899999999999999962 3356667777889999999999999999888 44564 6789999999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHH
Q 010496 368 LEDALNVVENM-PMKPNEVVLGSLLA 392 (509)
Q Consensus 368 ~~~A~~~~~~~-~~~p~~~~~~~l~~ 392 (509)
+++|++.|++. .+.|+-.+|-.=+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999886 78898776654443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00089 Score=55.90 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=63.0
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL 256 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (509)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445566777777778888888888887776432221 3466677777788888888888888887764 4456666677
Q ss_pred HHHHHhcCCHHHHHH
Q 010496 257 IDLYSRCGCIEFARQ 271 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~ 271 (509)
..++...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.027 Score=51.67 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACR 395 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 395 (509)
..+.+..+.-|...|+...|.++-++.. .|+...|..-+.+|+..++|++..++... +-.+..|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 3455666667778888888877755544 38888899999999999999998887654 234578888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988872 2366778889999999988775443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.2e-05 Score=53.57 Aligned_cols=47 Identities=13% Similarity=0.272 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFK-PDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443211 1222233344445555555555555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00038 Score=51.17 Aligned_cols=92 Identities=23% Similarity=0.196 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
+..+...+...|++++|...+++..+.. +.+...+..+..++...++++.|.+.++...+.. +.+..++..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445556666666666666666665542 2233445555556666666666666666666554 3344455555566666
Q ss_pred cCCHHHHHHHHHhc
Q 010496 263 CGCIEFARQVFQRM 276 (509)
Q Consensus 263 ~g~~~~a~~~~~~~ 276 (509)
.|+++.|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00054 Score=64.38 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=82.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG 366 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 366 (509)
-...+...|++++|+..|+++++.. +-+...|..+..+|.+.|++++|+..++++.+. .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456778899999999999999863 335677888888999999999999999999842 2336778899999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHH
Q 010496 367 RLEDALNVVENM-PMKPNEVVLGSLL 391 (509)
Q Consensus 367 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 391 (509)
++++|...|++. .+.|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999886 6677655544444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00077 Score=53.56 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHhcCC-CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 171 MFDEMP-VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 171 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
.+..+. +.+......+...+...|++++|..+|+.+.... +-+..-|-.|..++...|++++|+..|......+ +-+
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 333443 3344444555555666666666666666665532 2234444555555666666666666666666655 455
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
...+..+..++...|+.+.|.+.|+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666665544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00038 Score=57.89 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
....|..+...+...|++++|...+++. ...|+ ..++..+...+...|++++|...+++++...|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788888999998888876 33332 347888888999999999999999999999888777788888
Q ss_pred HHHH-------HcCCchHHHHHHHHHH
Q 010496 426 NMYA-------AVGKWDGAGKIRRTMK 445 (509)
Q Consensus 426 ~~~~-------~~g~~~~A~~~~~~m~ 445 (509)
..+. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8877 7888887766666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.025 Score=55.79 Aligned_cols=305 Identities=12% Similarity=0.089 Sum_probs=182.1
Q ss_pred HHHHHHHhcCCchHHHHHHHhcCCCC---hHHHHHHHHHHHhCC---CHHHHHHHHhcCCC--CCHhHHHHHHHHHHHcC
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMRVKS---SFTWNAMIDGYMRRG---DIESAVRMFDEMPV--RDAISWTALLNGFVKRG 194 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 194 (509)
.+++-+...+.+..|+++-..+..|. ..+|......+.+.. +.+-+..+-+++.. ....+|..+.+..-..|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 35666777888999999999888764 566777777776653 33334444445544 36677888888888999
Q ss_pred ChHHHHHHHHHHHHcCCC----CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----------CCCCcHhHHHHHHH-
Q 010496 195 YFEEALECFREMQISGVE----PDYVTIISVLNACANVGTLGIGLWIHRYVLKQ-----------DFKDNVKVCNTLID- 258 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~- 258 (509)
+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++..+... ..|.....|..+++
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 999998887653222100 11223445566677778877766666555432 11222223322222
Q ss_pred -------HHHhcCCHHHHHHHHHhcc-------CCChhhHHHHHHHHHhCCCh---HHH-------HHHHHHHHH-CCCC
Q 010496 259 -------LYSRCGCIEFARQVFQRMH-------KRTLVSWNSIIVGFAVNGFV---GEA-------LEYFNSMQK-EGFK 313 (509)
Q Consensus 259 -------~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~---~~A-------~~~~~~m~~-~g~~ 313 (509)
.+.+.++...+...|..-. ..-.........++.+.... ++| +.+.+.+.. .|..
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~ 681 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGS 681 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0011111111211111100 01111222233344433321 111 111111211 2333
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010496 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAA 393 (509)
Q Consensus 314 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 393 (509)
-...+.+--+.-+...|+..+|.++-.+.+ -|+...|..-+.+++..+++++-+++-+..+ .+..|.-++.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 444566666667778889999888777666 4888888888899999999999888887775 25667778889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.++--+
T Consensus 754 c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999998876532 12677888888888888876533
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.036 Score=50.89 Aligned_cols=284 Identities=14% Similarity=0.140 Sum_probs=147.4
Q ss_pred cchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
++|..+...-...|+..-|..+++. .|...-=.-++ ... ++.+.| +....+.| +| ..+|..|+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~qVplL---L~m--~e~e~A---L~kAi~Sg-D~--DLi~~vLl 63 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL------EPRASKQVPLL---LKM--GEDELA---LNKAIESG-DT--DLIYLVLL 63 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc------CCChHHHHHHH---hcC--CchHHH---HHHHHHcC-Cc--cHHHHHHH
Confidence 3577788888889999988887654 44443322222 222 444443 44555555 22 34555555
Q ss_pred HHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFRE 205 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 205 (509)
..--+.. .. +++ .+....+.. ..+...|++..+.+.-.++|..-..........+-.++.. .+.+.-...+..
T Consensus 64 ~L~~~l~-~s---~f~-~il~~~p~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~ 136 (319)
T PF04840_consen 64 HLKRKLS-LS---QFF-KILNQNPVA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQ 136 (319)
T ss_pred HHHHhCC-HH---HHH-HHHHhCcch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 5433322 11 122 221111212 2344556676677776666654333222222222223222 333333333333
Q ss_pred HHHc-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHH---HHH-cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 010496 206 MQIS-GVEPDYVTIISVLNACANVGTLGIGLWIHRY---VLK-QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280 (509)
Q Consensus 206 m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 280 (509)
..+. +-..+......++ ++-.++++. +.+ .+......+.+.-+.-+...|+...|.++-.+..-|+
T Consensus 137 a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~d 207 (319)
T PF04840_consen 137 AQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPD 207 (319)
T ss_pred HHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcH
Confidence 3221 0001111111111 111112111 110 1111122334444566667788888888888887788
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..-|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+..+|..++.++. +..-+.
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~-----------~~~rv~ 270 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP-----------DEERVE 270 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC-----------hHHHHH
Confidence 88888888888888888776665332 1133667777888888888888877776633 233566
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 010496 361 LYSRAGRLEDALNVVENMP 379 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~ 379 (509)
.|.++|++.+|.+.--+.+
T Consensus 271 ~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 271 MYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHCCCHHHHHHHHHHcC
Confidence 7788888888776655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00042 Score=62.81 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMK---KIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-------PMK-PNE 384 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~ 384 (509)
..|..|...|.-.|+++.|+...+.-. +.+|-.. -...+..|..++.-.|+++.|.+.++.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345566666666788888876655322 2333332 2456777888888888888888877654 211 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDL----D--PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
....+|..+|.-..++++|+.++.+-+.+ + .....++.+|+.+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677788887778888888877765442 1 12345688888888888888888877766544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0027 Score=57.76 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=65.4
Q ss_pred HHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCHH-HH
Q 010496 322 ALTACSHA-GLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENMP---M-----KPNEV-VL 387 (509)
Q Consensus 322 li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~ 387 (509)
+...|... |+++.|++.|++..+.+..... ..++..+...+.+.|++++|.++|++.. . +.+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 6777777777766542211111 3345566677778888888888887651 1 11221 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCc---hHHHHHHHHHHc--CCchHHHHHHHHH
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPG--VDS---NYVLLANMYAAV--GKWDGAGKIRRTM 444 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~---~~~~l~~~~~~~--g~~~~A~~~~~~m 444 (509)
...+-++...|+...|.+.+++.....|. ++. ....|+.++-.. ..+++|+.-|+.+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 33334566778888888888888877765 222 234444444332 2345555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.002 Score=51.46 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=76.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
...-+...|++++|..+|+-+ -..| +..-|..|..++-..+++++|...|..+...++++|..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 444556789999999999887 2333 56677888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 010496 436 GAGKIRRTMKG 446 (509)
Q Consensus 436 ~A~~~~~~m~~ 446 (509)
.|+..|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998877
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0027 Score=62.43 Aligned_cols=61 Identities=25% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|..+.-.+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444445555555555555555555 234455555555555555555555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=57.73 Aligned_cols=94 Identities=9% Similarity=0.086 Sum_probs=80.0
Q ss_pred CCCCCCccchHHHHHHHHcC-----CChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCC--------------ccchh
Q 010496 39 KSTVNPTVQWTSSISRHCRS-----GRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFP--------------SQCLF 99 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------------~~~~~ 99 (509)
.+...|..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+.. ....+
T Consensus 41 ~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 41 PGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred hhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 46788999999999999754 778888889999999999999999999999875432 35667
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 010496 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR 133 (509)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (509)
-+..++++|...|+-|+ .+++..|++.+++.+.
T Consensus 121 c~i~lL~qME~~gV~Pd-~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPD-KETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHhccccH
Confidence 88999999999999998 9999999998876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.6e-05 Score=51.89 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...|++++|.++|+++.+..|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999998889999999999999999999999887665
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0024 Score=48.92 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=67.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD---NVKVCNTLIDL 259 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 259 (509)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |. +......+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 355667777888888888888887775543 3345556677778888888888888777652 22 23333334456
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKRTLVSWNSIIVGF 291 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 291 (509)
+...|+.++|++.+-...-++...|..-|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776655544444444444444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0081 Score=54.67 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCc--HhH
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGV---EPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQ----DFKDN--VKV 252 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~ 252 (509)
......|...|++++|.+.|.+...... .+. ...|.....++. ..++++|...+++..+. | .++ ..+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~ 116 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 3455666667777777777666532110 111 112333333333 33666666666554431 2 111 223
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----CCHH
Q 010496 253 CNTLIDLYSRC-GCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK-----PDGV 317 (509)
Q Consensus 253 ~~~l~~~~~~~-g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~ 317 (509)
+..+...|... |+++.|++.|++..+ .. ..++..+...+.+.|++++|.++|+++...... .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 44455555555 566666655555431 11 123444455555556666666666555443211 1111
Q ss_pred -HHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 318 -SFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 318 -~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|...+-++...|+.-.|...+++..
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11222223344455555555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.032 Score=51.21 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=43.4
Q ss_pred HHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcC
Q 010496 291 FAVNGFVGEALEYFNSMQKE---GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAG 366 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 366 (509)
..+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.-.+... .+.+. +..|..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666542 233344445555555556666666666666555 22222 222222333444455
Q ss_pred ChHHHHHHHHhC
Q 010496 367 RLEDALNVVENM 378 (509)
Q Consensus 367 ~~~~A~~~~~~~ 378 (509)
++++|.+-++..
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.041 Score=48.59 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=44.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HH---HHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV-TI---ISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
++..+......+...|++++|.+.|+.+... .|+.. .. -.++.++.+.++++.|...+++.++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444545666667788888888888888774 34322 21 345566778888888888888887764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0023 Score=53.23 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=50.9
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEP--DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666667777777777777777776542222 12356666677777777777777777777653 34445555555
Q ss_pred HHHH
Q 010496 258 DLYS 261 (509)
Q Consensus 258 ~~~~ 261 (509)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.9e-05 Score=41.50 Aligned_cols=29 Identities=41% Similarity=0.746 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 311 (509)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00024 Score=49.48 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=51.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...|.+.+++++|.+++++++..+|.++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999988654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0026 Score=57.60 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA-CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357777777778888888888888887542 2233344433333 33356777799999998864 4456777888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
.+.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+.++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888999999999999886 323333 488888888889999999999999998887763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.013 Score=51.75 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCh---hh---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHKRTL---VS---WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
.....+...|++++|.+.|+.+....+ .. .-.++.++.+.+++++|...+++.++....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455566777777777777653211 11 233455667777777777777777764222112222222222221
Q ss_pred --cC---------------C---HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 010496 329 --AG---------------L---IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLG 388 (509)
Q Consensus 329 --~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 388 (509)
.+ + ...|...|+.+.+. |=...-..+|...+..+..+--..- .
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e-~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE-L 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-H
Confidence 10 1 12344444444432 2222223333333333311101111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+..-|.+.|.+..|..-++.+++.-|..+ .+...++.+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 345668899999999999999999888744 4678888999999999999998876643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0055 Score=53.97 Aligned_cols=101 Identities=22% Similarity=0.158 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 349 SPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTK---GDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
+-|...|..|...|...|++..|..-|.+. ++.| +...+..+..++..+ ....++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447888999999999999999999999886 4444 555666666665433 35778899999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
|+..+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=62.72 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 221 (509)
+......+++.+....+++.+.+++...... -+.+.+++++.|.+.|..+++++++..=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5556666777777777888888888766532 2446679999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC 263 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (509)
+..+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988877666777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0014 Score=61.74 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=60.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
+.+......+++.+....+.+.+..++.+.... ...|..+++..|...|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444555555555555555566666665555421 22344566666666666666666666666666677777777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 010496 321 GALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|++.+.+.|++..|.++...|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHH
Confidence 77777777777766666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0075 Score=59.41 Aligned_cols=129 Identities=9% Similarity=-0.069 Sum_probs=65.6
Q ss_pred CCCHhHHHHHHHHHHc--c---CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--------CHHHHHHHHHhcc-
Q 010496 212 EPDYVTIISVLNACAN--V---GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG--------CIEFARQVFQRMH- 277 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~- 277 (509)
+.+...|...+++... . ++...|..+|+++++.. |-....+..+..+|.... ++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4556667666666432 2 22567777777777765 444555555544443221 1222222222211
Q ss_pred ----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 278 ----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 278 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
..+...|.++.......|++++|...++++... .|+...|..+...+...|+.++|...+++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 113344444444444455555555555555554 2455555555555555555555555555555
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=47.76 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCcHhH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGV-EPDYVTIISVLNACANVG--------TLGIGLWIHRYVLKQDFKDNVKV 252 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 252 (509)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566667777999999999999999999 899999999998876543 24467788999999999999999
Q ss_pred HHHHHHHHHh
Q 010496 253 CNTLIDLYSR 262 (509)
Q Consensus 253 ~~~l~~~~~~ 262 (509)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00047 Score=46.68 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=46.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
+...+.+.|++++|.+.|+++ ...|+ ...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888886 55564 55777888888888888888888888888888753
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.016 Score=46.94 Aligned_cols=133 Identities=12% Similarity=0.064 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHH
Q 010496 312 FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---EVVL 387 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~ 387 (509)
..|+...-..|..+....|+..+|...|++.. ..-+.-|......+.++....+++..|...++.+ ...|. +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 35677777778888889999999999999888 4444557777888888888899999998888876 33332 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..+..++...|++.+|...|+.++...|.. ..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 456778888999999999999999887763 4555667778888887776665555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0071 Score=54.82 Aligned_cols=127 Identities=14% Similarity=0.114 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA-CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
+|..+++...+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 55666666666666777777777766432 2233444444443 23345555577777766665 355666666666666
Q ss_pred HhcCCHHHHHHHHHhccCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 261 SRCGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
...|+.+.|..+|++.... -...|..++..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777777777777666532 2235666666666666666666666666553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.003 Score=46.58 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 285 NSIIVGFAVNGFVGEALEYFNSMQKEGF-KPDGVSFTGALTACSHAG--------LIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 285 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
...|..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+..+.. ++-....+|+.|. ..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3345556666888888888988888888 888889998888776542 2345667778887 56788888888
Q ss_pred HHHHHHHHh
Q 010496 356 GCIVDLYSR 364 (509)
Q Consensus 356 ~~li~~~~~ 364 (509)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0019 Score=57.46 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLAN 426 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~ 426 (509)
|...+..+.+.|++++|...|+.+ ...|+. ..+..+...|...|++++|...|+.+++..|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445556666666666665 333332 3455566667777777777777777776666533 34555566
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 010496 427 MYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++...|++++|.++|+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 677777777777777776654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.059 Score=43.82 Aligned_cols=124 Identities=14% Similarity=0.049 Sum_probs=70.0
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHH
Q 010496 212 EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RTLVSWNS 286 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 286 (509)
.|+...-..|..++...|+..+|...|++...--+-.|......+.++....+++..|...++++-+ +.+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555566666666666666666666666554455666666666666666666666666666543 13334445
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 337 (509)
+...+...|++.+|+..|+..... -|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 555666666666666666666654 3333322222223445555444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.015 Score=49.86 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-----HhHHHHHHH
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN-----VKVCNTLID 258 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 258 (509)
+.++..+...|.+.-...++++.++...+.++.....|++...+.||.+.|..+|+...+..-..+ ..+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444445555555555555555544333444455555555555666666555555444321222 222222233
Q ss_pred HHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 259 LYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
.|.-.+++..|...|.++... ++..-|.-.-+..-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445555555555554432 3333344333444455555555555555553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00084 Score=46.09 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG-DIILAERLMKYLVDLDP 415 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 415 (509)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777788888888888888775 4455 3557777788888888 68888888888887766
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.067 Score=49.65 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKR-------TLVSWNSIIVGFAV---NGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
..++-+|....+++...++.+.+... ....-....-++.+ .|+.++|++++..++.....+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34445566777777777777766643 12222233445555 778888888888766655667777777776
Q ss_pred HHHhc---------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC-hH---HHHHHH---Hh-C------CC
Q 010496 324 TACSH---------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR-LE---DALNVV---EN-M------PM 380 (509)
Q Consensus 324 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~-~------~~ 380 (509)
+.|-. ....++|+..|.+.- .+.|+...=-.++..+...|. .+ +..++- .. . .-
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65431 123677777777665 333543322222223333332 11 222222 11 1 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 381 KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 381 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
..+-..+.+++.++.-.|++++|.+.++++.+..|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3467788899999999999999999999999886553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.028 Score=54.46 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 263 CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
.|-.+.+.++-+++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.+...++|++|..+-++.
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 333344444444444444444444444445555566666666655431 23455566667777766665554
Q ss_pred H
Q 010496 343 K 343 (509)
Q Consensus 343 ~ 343 (509)
.
T Consensus 800 P 800 (1081)
T KOG1538|consen 800 P 800 (1081)
T ss_pred c
Confidence 4
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.14 Score=46.76 Aligned_cols=287 Identities=17% Similarity=0.100 Sum_probs=143.5
Q ss_pred HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH--HHHhcCCchHHHHHHHhcCCCCh---HHHHHHHH
Q 010496 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD--MYAKFGRMDLATVVFDAMRVKSS---FTWNAMID 157 (509)
Q Consensus 83 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~ 157 (509)
|..|=.++...+.|+-..++++-.+..+. +..| ......|+. .-.-.|+.+.|.+-|+.|..... .-...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssD-qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSD-QEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhcc-chHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 33444443333336666666665554422 1122 222222332 33345777777777777764211 11222222
Q ss_pred HHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhH--HHHHHHH--HH-cc
Q 010496 158 GYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISG-VEPDYVT--IISVLNA--CA-NV 228 (509)
Q Consensus 158 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~--~~~l~~~--~~-~~ 228 (509)
.--+.|+.+.|...-+..-.. -...+.+.+...+..|+|+.|+++++.-+... +.++..- -..|+.+ .. -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 233566666666665544322 34566677777777777777777777655432 2333221 1122221 11 12
Q ss_pred CCHHHHHHHHHHHHHcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 229 GTLGIGLWIHRYVLKQDFKDNV-KVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
.+...|...-.+..+.. |+. ..-.....++.+.|+..++-.+++.+=+..+.---..+-.+.+.|+ .++.-+++.
T Consensus 243 adp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHH
Confidence 24555555555555442 332 2223345666777777777777776653322221122222333443 233333322
Q ss_pred HH-CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHhC
Q 010496 308 QK-EGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR-AGRLEDALNVVENM 378 (509)
Q Consensus 308 ~~-~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 378 (509)
.+ ...+|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++..++-+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 21 112333 3455556666667777777766555554 445666667666665443 37777777777654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=51.93 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHhcC--CCCCHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-------------
Q 010496 169 VRMFDEM--PVRDAISWTALLNGFVKR-----GYFEEALECFREMQISGVEPDYVTIISVLNACANV------------- 228 (509)
Q Consensus 169 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 228 (509)
.+.|+.. ...+..+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|++++=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 344666777777776543 66777777788888888888899999988887542
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 229 ---GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 229 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
.+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1236788999999999999999999999999977654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0087 Score=45.86 Aligned_cols=54 Identities=20% Similarity=0.073 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPG---VDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.+..++...|++++|..++++.....|+ +......++.++...|+.++|++.+-
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444455555555555544444443 22233333444444455555544443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.26 Score=48.54 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=52.2
Q ss_pred cCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-----DAISWTALLNGFVKRGYFEEALECFRE 205 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~ 205 (509)
.|++++|.+++-.+..+|. .+..+.+.|++-...++++.-... -..+|+.+...+.....|++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999988877664 456677888888888888764432 245777788888777778887777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=59.63 Aligned_cols=260 Identities=17% Similarity=0.107 Sum_probs=149.9
Q ss_pred chHHHHHH--HHcCCChhHHHHHHHHHhhCCCCCCccc----HHHHHHhhcCCCccchhHHHHHHHHHHHh----CCCCC
Q 010496 47 QWTSSISR--HCRSGRIAEAALEFTRMTLHGTNPNHIT----FITLLSGCADFPSQCLFLGAMIHGLVCKL----GLDRN 116 (509)
Q Consensus 47 ~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 116 (509)
++...+.+ +|+.|+...-+.+|+..++-|.. |..+ |+.|-.++.-. +++..|.+.+..=+.. |-...
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL--~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYL--KDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhH--hhHHHHHhhhhhhHHHHHHhcchhc
Confidence 44444443 78999999999999999997733 4443 45555555566 7888888765432221 21111
Q ss_pred chHHHHHHHHHHHhcCCchHHHHHHHhcCC-------C--ChHHHHHHHHHHHhCCC--------------------HHH
Q 010496 117 NVMVGTALLDMYAKFGRMDLATVVFDAMRV-------K--SSFTWNAMIDGYMRRGD--------------------IES 167 (509)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~--------------------~~~ 167 (509)
-...-..|.+.+--.|.+++|+..-.+-.. + ....+..+...|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 122333456666667888888665443221 1 23345556666654432 233
Q ss_pred HHHHHhcCCCC---------CHhHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCC-CCHhHHHHHHHHHHccCCHHH
Q 010496 168 AVRMFDEMPVR---------DAISWTALLNGFVKRGYFEEALECFREM----QISGVE-PDYVTIISVLNACANVGTLGI 233 (509)
Q Consensus 168 A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~~~~-p~~~~~~~l~~~~~~~~~~~~ 233 (509)
|.++|.+-.+- -..+|..|...|.-.|+++.|+...+.- ++.|-. .....+..+..++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 33443321110 1234555555555567777777665432 222211 123456667777777788888
Q ss_pred HHHHHHHHH----HcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhhHHHHHHHHHhCCChHH
Q 010496 234 GLWIHRYVL----KQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---------RTLVSWNSIIVGFAVNGFVGE 299 (509)
Q Consensus 234 a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~ 299 (509)
|.+.|+... +.|- ......+..|...|.-..++++|+.++.+-.. -....+..|..+|...|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 877776544 2331 22345566677777777777888777765431 134567777777777777777
Q ss_pred HHHHHHHHHH
Q 010496 300 ALEYFNSMQK 309 (509)
Q Consensus 300 A~~~~~~m~~ 309 (509)
|+...+.-.+
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 7776665443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.31 Score=48.54 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY 362 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (509)
+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+..+. +.-|.-++..|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHH
Confidence 34444555666777777776666543 45666666667777777777765555444331 22355566777
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 363 SRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMK 408 (509)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (509)
.+.|+.++|.+++.+.+--+ -.+.+|.+.|++.+|.++.-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 77788888777777764222 34566667777777766443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.003 Score=43.10 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
..|++++|.++|+++.+.. |.+..++..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555543 4445555555555555555555555555554
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.003 Score=59.12 Aligned_cols=64 Identities=20% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS---NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...++.+..+|...|++++|+..|+++++++|++.. +|..++.+|...|+.++|+..+++.++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666665543 2566666666666666666666665553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.087 Score=45.41 Aligned_cols=135 Identities=14% Similarity=0.038 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH----
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC---- 357 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 357 (509)
..-+.++..+.-.|.+.-....+.+.++...+-++.....|.+.-.+.|+.+.|...|++..+..+ ..+.-..+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 344566667777788888888888888876566777778888888888999988888887764322 222222222
Q ss_pred -HHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 358 -IVDLYSRAGRLEDALNVVENMP-M-KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 358 -li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
....|.-.+++.+|...+.++. . ..++...|.-.-+..-.|+..+|.+.++.+++..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2233455667777777777763 2 2244455554445556778888888888888877763
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00046 Score=39.34 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
+|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.018 Score=51.34 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSL 390 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 390 (509)
..|...+....+.|++++|+..|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455444444566788888888888875432221 1345667778888888888888888776 22232 3355556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
+..+...|+.++|.++|+++++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6677788999999999999998888754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.2 Score=42.99 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-hHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVE--PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV-KVCNTLI 257 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 257 (509)
...-.....+...|++.+|.+.|+.+...-.. --....-.++.++.+.|+++.|...++..++.- |-+. .-+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHH
Confidence 34445566677788888888888888765211 112344456677778888888888888877653 2111 1122222
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010496 258 DLYSRCGCIEFARQVFQRMHKRTL-------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG 330 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 330 (509)
.+.+.-....... ....|. ..+..++.-|=...-..+|...+..+... =...-..+..-|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 2221111111110 011111 12333444444445555555555444332 0011112445577777
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010496 331 LIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 331 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 371 (509)
.+..|..-++.+.+...-.+. ......++.+|.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777754432221 23445566677777766643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0034 Score=43.56 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=48.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
..|.+.+++++|.++++.+ ...| +...+......+...|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4677888888888888887 5555 45577777888888999999999999999888876544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.46 Score=46.26 Aligned_cols=382 Identities=13% Similarity=0.069 Sum_probs=226.7
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHH-HhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLL-SGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
..-+-..|..+|.---.....+.+..++..++.+ -|....|=.-. ..=.+. |..+.+.++|+..+..- |-+..
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~ai--p~Svd 114 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQAI--PLSVD 114 (577)
T ss_pred chhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhh--hhHHH
Confidence 3345567777777666666667777888888753 56655432222 112344 77788888888777663 34477
Q ss_pred HHHHHHHHHH-hcCCchHHHHHHHhcCCC------ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHH
Q 010496 120 VGTALLDMYA-KFGRMDLATVVFDAMRVK------SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVK 192 (509)
Q Consensus 120 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 192 (509)
.|......++ ..|+.+.....|+....- +...|...|.--...+++.....+++.+.+-....|+..-..|.+
T Consensus 115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 7766665544 457888888888877632 556677777777788888888888887765443433333333221
Q ss_pred ---c------CChHHHHHHHHHHHHc------C-------------CCCCH---hHHHHHHHH-------HHccCCHHHH
Q 010496 193 ---R------GYFEEALECFREMQIS------G-------------VEPDY---VTIISVLNA-------CANVGTLGIG 234 (509)
Q Consensus 193 ---~------~~~~~A~~~~~~m~~~------~-------------~~p~~---~~~~~l~~~-------~~~~~~~~~a 234 (509)
. ...+++.++-...... + ..|.. ...+.+... +...-.....
T Consensus 195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 195 LLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 1 1223333322221110 0 01110 001111111 1111111222
Q ss_pred HHHHHHHHHcC-------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHH
Q 010496 235 LWIHRYVLKQD-------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYF 304 (509)
Q Consensus 235 ~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 304 (509)
...++.-++.- .+++..+|...+..-...|+++.+.-+|++..-+ -...|-..+......|+.+-|..++
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 22222222221 1234567888888888999999999999998755 3345666666666669999998888
Q ss_pred HHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHH---HHHHhC
Q 010496 305 NSMQKEGFK--PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDAL---NVVENM 378 (509)
Q Consensus 305 ~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~ 378 (509)
....+-.++ |....+.+.+ +-..|+++.|..+++.+.+. . |+ +..-..-+....+.|..+.+. +++...
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 877665333 2222233322 34578999999999999963 3 55 333334455667788888887 444443
Q ss_pred -CCCCCHHHHHHH----HH-HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 379 -PMKPNEVVLGSL----LA-ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 379 -~~~p~~~~~~~l----~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
..+-+..+...+ .+ .+.-.++.+.|..++.++.+..|.+...|..++......+.
T Consensus 430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 212222222222 22 24456789999999999999999998899999988777653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0037 Score=44.10 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDL----DPGV---DSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+++.+...|...|++++|+..++++++. ++.+ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36777777888888888888888887753 2222 23577888888888888888888877653
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.35 Score=47.76 Aligned_cols=248 Identities=13% Similarity=0.084 Sum_probs=147.7
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH----------HHHHHccCCHHHH
Q 010496 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV----------LNACANVGTLGIG 234 (509)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l----------~~~~~~~~~~~~a 234 (509)
+++|.++.+. .|.+..|..+.......-.++.|...|-+... .+.......| ...-.--|++++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 4555555544 34456666666555555555555555443322 1111111111 1122335888999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
+++|-++-+++ ..+..+.+.|+|-.+..+++.-... -...|+.+...+.....|++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98887777654 3567788889998888888765432 125788888889888889999888875322
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGS 389 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 389 (509)
. ...+.++.+..++++-+.+-+.+. .+....-.+.+++.+.|.-++|.+.+-+-+.+ ..
T Consensus 825 ------~---e~~~ecly~le~f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------ka 883 (1189)
T KOG2041|consen 825 ------T---ENQIECLYRLELFGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KA 883 (1189)
T ss_pred ------h---HhHHHHHHHHHhhhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHHhccCc------HH
Confidence 1 224556666666665554444333 34455666788888888888888877665432 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPG-----------VDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.+|...+++.+|.++.++..-.... ...-..--+..+.+.|+.-+|-+++.+|.+.
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 345566667777777665543110000 0011223345677788888888888888654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.1 Score=50.84 Aligned_cols=179 Identities=12% Similarity=0.137 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 184 TALLNGFVKRGY--FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 184 ~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
+..-.+|.+..+ +-+.+.-++++++.|-.|+... +...++-.|++.+|.++|.+--.. +..+++|-
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyT 669 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYT 669 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHH
Confidence 333445544443 3445555677777776677543 345667778888888887543221 22344455
Q ss_pred hcCCHHHHHHHHHhccCC--------------ChhhHHHHHHHHHhCCChHHHHHHHHH------HHHCCC---CCCHHH
Q 010496 262 RCGCIEFARQVFQRMHKR--------------TLVSWNSIIVGFAVNGFVGEALEYFNS------MQKEGF---KPDGVS 318 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~------m~~~g~---~p~~~~ 318 (509)
....++.|.+++...... ++.-=.+....+...|+.++|..+.-+ +.+.+- ..+..+
T Consensus 670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~ 749 (1081)
T KOG1538|consen 670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP 749 (1081)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence 555555555554433210 111112233444455555555544221 111111 122334
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE 384 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 384 (509)
...+...+-+...+.-|.++|.+|-. ...+++.....+++.+|..+-++. ++.||+
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 44444444455556666666666652 233566667777777777777776 344443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.002 Score=39.40 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
.++..+...|...|++++|.++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778889999999999999999999999999888877764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.031 Score=47.98 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDS---NYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 438 (509)
+...|.+.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456788999999999999999998888543 5778888899999887544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=53.32 Aligned_cols=62 Identities=16% Similarity=0.033 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+..+..++.+.+++..|++...+.++.+|.|..++..-+.+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555555666666666666666666666666666666666666666666666666666553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.057 Score=41.17 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=85.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 371 (509)
.-.|..++..+++.+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467777777777777763 245556666655555555555566666555322221 23333444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010496 372 LNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
...+-.++ .+.......+..+...|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++-+++.+..++|+.
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 234455666778889999999999999988766667888999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.009 Score=48.25 Aligned_cols=69 Identities=30% Similarity=0.354 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccCC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG-----RGIQKKP 453 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 453 (509)
.....++..+...|++++|..++++++..+|-+...|..++.+|...|+..+|.++|+++.. .|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777788999999999999999999999999999999999999999999999998853 4776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.11 Score=46.07 Aligned_cols=96 Identities=7% Similarity=-0.019 Sum_probs=46.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN---GFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
|-|...|-.|..+|...|+++.|..-|.+.. .+++..+..+..++... ....++..+|++++... +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 4445555555555555555555555555443 22344444444433321 12345555555555531 12333344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 010496 321 GALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|...+...|++.+|...|+.|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 44445555566666666666655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.044 Score=50.38 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
..++..|.-+|.+.+++.+|++..+.. ...| |...+..-..+|...|+++.|...|+++.+..|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345777888999999999999988876 4444 66677777899999999999999999999999999888888888877
Q ss_pred HcCCchHH-HHHHHHHHhC
Q 010496 430 AVGKWDGA-GKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A-~~~~~~m~~~ 447 (509)
+..++.+. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77665554 7888888654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.71 Score=43.37 Aligned_cols=115 Identities=13% Similarity=0.028 Sum_probs=73.9
Q ss_pred hCCC-hHHHHHHHHHHHHCCCCCCHH-HHHH----HHHHHhc---cCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHH
Q 010496 293 VNGF-VGEALEYFNSMQKEGFKPDGV-SFTG----ALTACSH---AGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIV 359 (509)
Q Consensus 293 ~~~~-~~~A~~~~~~m~~~g~~p~~~-~~~~----li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li 359 (509)
+.|. -++|+++++.+..- .|... .-+. +=.+|.+ ...+..-..+-+-+. ..|++|- ...-|.|.
T Consensus 391 ~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-EVGLTPITISEEEIANFLA 467 (549)
T ss_pred hcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCCcccccHHHHHHHHH
Confidence 4454 78899999888874 33322 2222 2222322 123333333333334 6677763 34445554
Q ss_pred HH--HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 360 DL--YSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 360 ~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
++ +...|++.++.-.-... ++.|++.+|..+.-++....++++|..++..+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 43 56789999987665555 68899999999999999999999999999876
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.098 Score=41.04 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-HHHHHHH--HHHc
Q 010496 360 DLYSRAGRLEDALNVVENMP----MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN-YVLLANM--YAAV 431 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~ 431 (509)
....+.|++++|.+.|+.+. ..| ....-..|+.++.+.+++++|...+++.+++.|.++.+ |.....+ +.+.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 34456677777777777662 112 23455667777888888888888888888888875543 3333333 3333
Q ss_pred CC---------------chHHHHHHHHHHhC
Q 010496 432 GK---------------WDGAGKIRRTMKGR 447 (509)
Q Consensus 432 g~---------------~~~A~~~~~~m~~~ 447 (509)
.. ..+|..-|+++++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 33 55677777777664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0061 Score=42.95 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-----PMK---PN-EVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.+|+.+...|...|++++|+..+++. ... |+ ..++..+...+...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555666666666665555544 011 22 33666667777777777777777777655
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.061 Score=41.72 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 010496 311 GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS 363 (509)
Q Consensus 311 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (509)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35677788888888888888888888888888777777777777777776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.11 Score=46.40 Aligned_cols=149 Identities=12% Similarity=0.020 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH----HHHHHHhcCChH
Q 010496 294 NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC----IVDLYSRAGRLE 369 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~ 369 (509)
.|+..+|-..++++++. .+.|...+...-.+|...|+...-...++++.. ...++...|.. +.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45555555556665554 334445555555566666666666666666553 22344333322 222334566666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 370 DALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG----VDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 370 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
+|++.-++. .+.| |...-.++...+-..|++.++.+++.+-...-.. -...|...+..+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666554 3333 4445555555566666666666665544332111 111355555556666666666666654
Q ss_pred HH
Q 010496 444 MK 445 (509)
Q Consensus 444 m~ 445 (509)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.04 Score=47.91 Aligned_cols=106 Identities=8% Similarity=0.007 Sum_probs=81.8
Q ss_pred CCCCCCccchHHHHHHHHc-----CCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCC--------------ccchh
Q 010496 39 KSTVNPTVQWTSSISRHCR-----SGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFP--------------SQCLF 99 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------------~~~~~ 99 (509)
.+...|-.+|-..+..+.. .+..+=.-..++.|.+.|+.-|..+|..||..+-+.. .....
T Consensus 61 ~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~ 140 (406)
T KOG3941|consen 61 EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN 140 (406)
T ss_pred CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence 4567788888888888753 3567777788999999999999999999999875542 24455
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCch-HHHHHHHhcC
Q 010496 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMD-LATVVFDAMR 145 (509)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 145 (509)
-+..++++|...|+.|+ ..+-..|++++.+.+..- +..++.-.|.
T Consensus 141 C~I~vLeqME~hGVmPd-kE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPD-KEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHHHHcCCCCc-hHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 67888999999999998 888899999988877643 4444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.84 Score=42.03 Aligned_cols=286 Identities=17% Similarity=0.070 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHh--cCCchHHHHHHHhcC---CCChHHHHHHHHH--HHhCCCHHHHHHHHhcCCCCCHhH----HHHHH
Q 010496 119 MVGTALLDMYAK--FGRMDLATVVFDAMR---VKSSFTWNAMIDG--YMRRGDIESAVRMFDEMPVRDAIS----WTALL 187 (509)
Q Consensus 119 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~----~~~li 187 (509)
..|..|-.+++. .|+-..|.+.-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... +.+ ...|.
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLy 161 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLY 161 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHH
Confidence 445666665544 578888888877655 3355555555544 45679999999999999753 222 23344
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCcHhHH--HHHHHHH--H
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQD-FKDNVKVC--NTLIDLY--S 261 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~--~ 261 (509)
-...+.|..+.|..+-+..-.. -|. ......++...+..|+++.|+++++.-.... +.++..-- ..|+.+- .
T Consensus 162 leAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 4456789999999988887664 343 5677889999999999999999998776543 23333211 1122111 1
Q ss_pred -hcCCHHHHHHHHHhccC--CChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010496 262 -RCGCIEFARQVFQRMHK--RTLV-SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337 (509)
Q Consensus 262 -~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 337 (509)
-..+...|...-.+..+ ||.+ .--....++.+.|+..++-.+++.+-+....|+.. ..|.+...-+.+..
T Consensus 240 ~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHH
Confidence 12345666666555443 4433 33445567899999999999999999986666533 23444444455666
Q ss_pred HHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q 010496 338 YFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACR-TKGDIILAERLMKYLVDL 413 (509)
Q Consensus 338 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 413 (509)
-+++..+...++|+ ......+.++-...|++..|..--+.. ...|....|..|...-. ..|+-.++...+.+.++.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66776655567775 666777888888999999888777665 56788888888887654 459999999999988873
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.5 Score=44.81 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=50.0
Q ss_pred CchHHHHHHHhcCC-C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 010496 133 RMDLATVVFDAMRV-K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISG 210 (509)
Q Consensus 133 ~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 210 (509)
.+++....+++... | ....-...+..+.+.++++....++.. ...+...-.....+....|+.++|.+....+-..|
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 45555555555543 2 112223344455566777777763322 23355555556666777777766666666654444
Q ss_pred CCCCHhHHHHHHHHHHccC
Q 010496 211 VEPDYVTIISVLNACANVG 229 (509)
Q Consensus 211 ~~p~~~~~~~l~~~~~~~~ 229 (509)
......+..++..+.+.|
T Consensus 160 -~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 160 -KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred -CCCChHHHHHHHHHHHcC
Confidence 333445555555554444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.62 Score=39.97 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHcCCchHHHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLD----PGVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
.|-.+....++..|.+.++.-.+.. +.+..+...|+.+| ..|+.+++.++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444455555555555543321 22333444444444 33444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.068 Score=42.96 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
.-+...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|......+ .-|...+.....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33444555555555555444432 1233333344444444444555554444444333 223333333444444444444
Q ss_pred HHHHHHHhc
Q 010496 268 FARQVFQRM 276 (509)
Q Consensus 268 ~a~~~~~~~ 276 (509)
.|...|..+
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.19 E-value=2.2 Score=48.68 Aligned_cols=318 Identities=9% Similarity=0.026 Sum_probs=181.0
Q ss_pred HHHHHHHhcCCchHHHHHHHhcC----CC--ChHHHHHHHHHHHhCCCHHHHHHHHhc-CCCCCHhHHHHHHHHHHHcCC
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMR----VK--SSFTWNAMIDGYMRRGDIESAVRMFDE-MPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 195 (509)
.|..+-.+++.+.+|...++.-. .. ...-|-.+...|+.-+++|...-+... ...++ ....|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 45556677899999999999842 11 223344455589999998888777763 33322 2334556678899
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+..|...|+.+.+.+ ++...++.-++......+.+..+.-..+-.....-+.....++.-+++-.+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999999874 444778888888888888887777655554443312222334444666678888888888776
Q ss_pred ccCCChhhHHHH--HHHHHhCCChH--HHHHHHHHHHHCCCCC---------CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 276 MHKRTLVSWNSI--IVGFAVNGFVG--EALEYFNSMQKEGFKP---------DGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 276 ~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~g~~p---------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
..+..+|.+. +..+.+...-+ .-.+.++.+.+.-+.| -...|..++..+.-. +.+.-.+.+...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKKV 1619 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 4455555554 33333222211 1112333322211111 012333333322211 111111111111
Q ss_pred HHhcCCCCCHHHHHHHH---HHHHhcCChHHHHH-HHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 343 KKIYRVSPRIEHYGCIV---DLYSRAGRLEDALN-VVENMPMKPN-----EVVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 343 ~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~-~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
.......-+...|..-+ +.+.+...+--|.+ .+.....+|+ ..+|-...+.....|.++.|...+-.+.+.
T Consensus 1620 s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 10000011111222221 12222222222211 1111112222 448888888899999999999988888777
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010496 414 DPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
+ .+..+.-.+..++..|+-..|+.++++-.+....
T Consensus 1700 r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1700 R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 6 4678999999999999999999999998865443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.078 Score=42.74 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHhHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK-----QDFKDNVKVC 253 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 253 (509)
+...++..+...|++++|..+.+.+.... +-+...|..+|.++...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666677777888888777777753 44667777777788888887777777776542 4666766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.2 Score=46.99 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH----HHHHHHHccCCHHHHHHHH
Q 010496 163 GDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII----SVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 163 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~ 238 (509)
++++.|+.-+..+. ...|.-.+..--+.|.+.+|+.++ .|+...+. +....+.....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45566666555554 223344444445566666666554 44544443 3344455666677776666
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-Chhh--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 010496 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-TLVS--WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD 315 (509)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 315 (509)
+..-+ ....+.+|..+|+|.+|+.+..++... |... -..|+.-+...+++-+|-++..+.... |.
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~ 1030 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE 1030 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH
Confidence 54433 223567777788888888887777654 3222 255667777778877777777765542 11
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
-.+..+++...+++|.++-..
T Consensus 1031 -----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1031 -----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -----HHHHHHhhHhHHHHHHHHHHh
Confidence 123334555556666554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.11 E-value=2.4 Score=45.00 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 359 VDLYSRAGRLEDALNVVENMPMKPNEVV--LGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
+.+|..+|++.+|+.+..++...-+... -..|+.-+...++.-+|-++....
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4455566666666666655543323222 244455555555555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.057 Score=50.87 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888888774 666763 34777888888888888888888888775
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.7 Score=42.77 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhcCCC-C---h------HHHHHHHHHHHh----CCCHHHHHHHHhcCCC--CCHhHHH
Q 010496 121 GTALLDMYAKFGRMDLATVVFDAMRVK-S---S------FTWNAMIDGYMR----RGDIESAVRMFDEMPV--RDAISWT 184 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~------~~~~~l~~~~~~----~~~~~~A~~~~~~~~~--~~~~~~~ 184 (509)
...++...+=.||-+.+++.+.+..+. + + ..|+..+..++- ..+.+.|.+++..+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344555555556666666666554432 1 1 123333332222 3345666666665554 3433332
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHcC--C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH-HHH
Q 010496 185 -ALLNGFVKRGYFEEALECFREMQISG--V-EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL-IDL 259 (509)
Q Consensus 185 -~li~~~~~~~~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~ 259 (509)
.-.+.+...|+.++|++.|+...... . +.....+--+..++.-..++++|...+..+.+.. ..+..+|.-+ ..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 22345555666666666666543211 0 1112223344455566666666666666666554 2333333222 233
Q ss_pred HHhcCCH-------HHHHHHHHhcc
Q 010496 260 YSRCGCI-------EFARQVFQRMH 277 (509)
Q Consensus 260 ~~~~g~~-------~~a~~~~~~~~ 277 (509)
+...|+. ++|.++|.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 3444555 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.4 Score=41.24 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISG---VEPDYVTIISVLNACAN---VGTLGIGLWIHRYVLKQDFKDNVKVCNTL 256 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (509)
...++-+|....+++..+++++.+.... +.-+...--...-++.+ .|+.++|++++..++.....++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344445666666666666666665531 00011111122333444 66666666666665444445666666666
Q ss_pred HHHHH
Q 010496 257 IDLYS 261 (509)
Q Consensus 257 ~~~~~ 261 (509)
+..|-
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 55554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.91 Score=43.37 Aligned_cols=100 Identities=12% Similarity=0.186 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--HHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPM--KPNE--VVLGSLLA 392 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~~ 392 (509)
..-..+..++.+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+-.. -|.. ..|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3334566677788999999999999985443333455778899999999999999999888631 2332 35554432
Q ss_pred HHHhcCC---------------HHHHHHHHHHHHhcCCC
Q 010496 393 ACRTKGD---------------IILAERLMKYLVDLDPG 416 (509)
Q Consensus 393 ~~~~~g~---------------~~~a~~~~~~~~~~~~~ 416 (509)
-+...++ -..|.+.+.++++.+|.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 2222221 23466788888887765
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.5 Score=41.29 Aligned_cols=372 Identities=10% Similarity=0.001 Sum_probs=203.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcC
Q 010496 66 LEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMR 145 (509)
Q Consensus 66 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (509)
.+=+++.+ .+-|..+|-.|+.-+... +..+..++.++++..-- |--+.+|..-+.+-...++++....+|.+..
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pf--p~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPF--PIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCC--ccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 55555554 244778899999998888 88888899988886542 3335677777777777789999999998887
Q ss_pred CC--ChHHHHHHHHHHHhCCC---------HHHHHHHHhcC--CC-CCHhHHHHHH---HHHHHcCChH------HHHHH
Q 010496 146 VK--SSFTWNAMIDGYMRRGD---------IESAVRMFDEM--PV-RDAISWTALL---NGFVKRGYFE------EALEC 202 (509)
Q Consensus 146 ~~--~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~--~~-~~~~~~~~li---~~~~~~~~~~------~A~~~ 202 (509)
.. +...|...+..-.+.+. +-+|.++.-.. -+ .....|+..+ ...-..|.|+ ...+.
T Consensus 104 ~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 104 KKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 54 67778777776555432 22333322211 11 2333344333 3333445554 34445
Q ss_pred HHHHHHcCCCCCHhH------HHHHHHH-----HH--ccCCHHHHHHHHHHHHHc--CC---------------------
Q 010496 203 FREMQISGVEPDYVT------IISVLNA-----CA--NVGTLGIGLWIHRYVLKQ--DF--------------------- 246 (509)
Q Consensus 203 ~~~m~~~~~~p~~~~------~~~l~~~-----~~--~~~~~~~a~~~~~~~~~~--~~--------------------- 246 (509)
+.+|....+..=... |..=+.- +. ...-+-.|.+.++++... |+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 555544211100001 1000000 00 000122333333333210 11
Q ss_pred -----------------------------------CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 010496 247 -----------------------------------KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGF 291 (509)
Q Consensus 247 -----------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 291 (509)
+....+|.-.-..+...++-+.|+...++..+-.+..--.+...|
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~y 343 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYY 343 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHH
Confidence 011111111122223345666666666654432221111111122
Q ss_pred HhCCChHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 292 AVNGFVGEALEYFNSMQK--------------EGF---------------KPDGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~--------------~g~---------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
...++.+.....|++... .+. .--...|...+++..+..-.+.|..+|-++
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222222222222221110 011 111234566677777778899999999999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 010496 343 KKIYR-VSPRIEHYGCIVDLYSRAGRLEDALNVVEN-MPMKPNEVVL-GSLLAACRTKGDIILAERLMKYLVDLDPGV-- 417 (509)
Q Consensus 343 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 417 (509)
.+ .+ +.+++.++++++..++ .|++.-|..+|+- |..-||...| ...+.-+...++-+.|..+|+..++.-.+.
T Consensus 424 rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 424 RK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred hc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 94 45 5678888899887665 5788889999976 4555665544 445666778899999999999776643332
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 418 DSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 418 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
...|..++.--.+-|+...+..+=++|.
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 4568888887788888866665555553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.14 Score=39.78 Aligned_cols=80 Identities=9% Similarity=0.133 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHH---------------cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQI---------------SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ 244 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (509)
..++.+++.++++.|+.+....+++..-. ....|+..+..+++.+++..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34555566666666666665555544311 123455555555555555555555555555554433
Q ss_pred -CCCCcHhHHHHHHHH
Q 010496 245 -DFKDNVKVCNTLIDL 259 (509)
Q Consensus 245 -~~~~~~~~~~~l~~~ 259 (509)
+++.+..+|..|++-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 344444555554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.2 Score=39.61 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=81.9
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 290 GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
.....|++.+|..+|......... +......+..++...|+.+.|..++..+-... -.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 445567777777777776664222 33445556667777777777777777665211 1111111122334444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHcCCchHH
Q 010496 370 DALNVVENMPMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDP--GVDSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 370 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 437 (509)
+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+- .+...-..++..+.-.|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444443445 455566666777777777777776666665433 3566667777776666644443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.2 Score=38.77 Aligned_cols=194 Identities=18% Similarity=0.146 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK-----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT-A 325 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~ 325 (509)
.+......+...+++..+...+..... .....+......+...+.+..+...+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 333444444444444444444443321 1223333334444444444555555554444322211 11111111 3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRV--SPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN--EVVLGSLLAACRTKGDI 400 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~ 400 (509)
+...|+++.+...+.+... ... ......+......+...++.+.+...+... ...++ ...+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 4455555555555555531 110 011222223333344555555555555554 22222 34555555555555566
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+...+.......+.....+..+...+...+.++++...+.+....
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666655553334444444444455566666665555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.19 Score=45.52 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=101.0
Q ss_pred HHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCc---HhHHHHHHHHHHh
Q 010496 190 FVKRGYFEEALECFREMQISG--VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ--DFKDN---VKVCNTLIDLYSR 262 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 262 (509)
+....+.++|+..+.+-..+- ...--.+|..+..+.++.|.+++++..--.-++. ..... -..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777666655431 1112345556666677777766665443222211 00111 1233444444444
Q ss_pred cCCHHHHHHHHHhccC-C-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcc
Q 010496 263 CGCIEFARQVFQRMHK-R-------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-----GVSFTGALTACSHA 329 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~ 329 (509)
..++.+++.+-..-.. | .-.....+..++...+.++++++.|+...+.-...+ ...+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444444332210 0 112333455555556666666666666554211111 13455555556666
Q ss_pred CCHHHHHHHHHHhHH---hcCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 010496 330 GLIEDGLRYFDIMKK---IYRVSPRIEHYGC-----IVDLYSRAGRLEDALNVVENM-------PMKP-NEVVLGSLLAA 393 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~ 393 (509)
.++++|.-+..+..+ ..++..-...|.. +.-++...|+.-.|.+.-++. +.++ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666655544332 2222211111221 223344455554444444332 2222 12244445555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010496 394 CRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~ 412 (509)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666665544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.16 Score=38.77 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=66.1
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-c---hHHHHHHHHHHcCCc
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD-S---NYVLLANMYAAVGKW 434 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~g~~ 434 (509)
++...|+.+.|++.|.+. .+-| +...||.-..++.-+|+.++|+.-+++++++..+.. . .|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567778888888888765 3444 567888888888888888888888888888543322 2 366666778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 010496 435 DGAGKIRRTMKGRGI 449 (509)
Q Consensus 435 ~~A~~~~~~m~~~~~ 449 (509)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.6 Score=39.63 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=30.7
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 217 TIISVLNACANVGTLG---IGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 217 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
++..++.++...+..+ +|..+++.+.... +-...++..-++.+.+.++.+.+.+.+.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3445556665555543 3344444443322 2234444445555555666666666666665
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.29 Score=46.44 Aligned_cols=142 Identities=10% Similarity=0.021 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 297 VGEALEYFNSMQK-EGFKPDG-VSFTGALTACSHA---------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 297 ~~~A~~~~~~m~~-~g~~p~~-~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
.+.|+.+|.+.+. ....|+- ..|..+..++... ....+|.++-++..+ --+-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4567777777762 1234443 3444444433221 123344455555552 1123455555555555666
Q ss_pred CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHHcCCchHHHHHH
Q 010496 366 GRLEDALNVVENM-PMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN--YVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 366 g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 441 (509)
++++.|..+|++. .+.||. .+|......+.-.|+.++|.+.+++++++.|....+ ....+..|+.. ..++|+++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 6677777777766 455653 355555555666777777777777777777663222 22223344433 455566655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.67 E-value=2 Score=40.58 Aligned_cols=149 Identities=13% Similarity=-0.004 Sum_probs=81.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--CHHH
Q 010496 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP---DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP--RIEH 354 (509)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 354 (509)
...+|..++..+.+.|.++.|...+.++...+... .+.....-++.+...|+..+|+..++...+ ..... +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~-~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK-CRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcccccc
Confidence 44577788888888888888888888887643211 223333344556677888888888887774 11111 1111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNV-VENMPMKPNEVVLGSLLAACRTK------GDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
...+...+.. ..+..... ........-...+..+...+... +..+++...|..+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000122344444444444 788999999999999999877788887777
Q ss_pred HHHc
Q 010496 428 YAAV 431 (509)
Q Consensus 428 ~~~~ 431 (509)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.54 Score=36.97 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 010496 400 IILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~ 418 (509)
...|..-|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677788888888777653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.73 Score=44.62 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 197 (509)
..-.+.++..+.+.|..+.|+++... + ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 33466677777777777777766432 1 233445566777777777776654 5667777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
-|.+.|.+... +..|+-.|.-.|+.+...++.......| . ++....++.-.|+.++..+++.+.
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88777766542 4455556667777777777776666655 1 344444555567777766666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.2 Score=43.72 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 284 WNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDG-----VSFTGALTACS----HAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 284 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
...+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++ .....+.|.+++..+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3344444445566666666665544421 11111 12233333222 2456777888888887432 4444
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-HH
Q 010496 354 HYG-CIVDLYSRAGRLEDALNVVENMPM-K-----PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL-LA 425 (509)
Q Consensus 354 ~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~ 425 (509)
.|. .-.+.+...|++++|++.|++... + .....+--+...+....++++|.+.+..+.+...-....|.. .+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 333 334556677888888888886521 1 122344555667778888888888888888866554444443 34
Q ss_pred HHHHHcCCc-------hHHHHHHHHHHh
Q 010496 426 NMYAAVGKW-------DGAGKIRRTMKG 446 (509)
Q Consensus 426 ~~~~~~g~~-------~~A~~~~~~m~~ 446 (509)
.++...|+. ++|.++|+++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 455667777 788888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.23 Score=43.41 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM----PMKPN-EVVLGSLL 391 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~ 391 (509)
.|+.-+. +.+.|++..|...|....+.+.-.+ ....+..|..++...|++++|..+|..+ +..|- +..+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3344556666666666664221111 1333444555555555555555555444 12221 23444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
....+.|+.++|...|+++.+..|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 555556666666666666666555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.49 Score=45.76 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=76.4
Q ss_pred HHHHcCChHHHHHHHHH--HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 189 GFVKRGYFEEALECFRE--MQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 189 ~~~~~~~~~~A~~~~~~--m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
...-.++++++.++.+. +.. .+ .......++..+.+.|-.+.|+++...-. .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 34445666665555431 111 11 13335556666666666666665532211 122445566677
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 267 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
+.|.++.+... +...|..|.......|+++-|++.|++... |..|+-.|.-.|+.+.-.++.+.... .
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~-~ 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE-R 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-c
Confidence 76666654443 455677777777777777777776665332 23333345555666655555555442 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 010496 347 RVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP 379 (509)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 379 (509)
|. ++....++.-.|+.++..+++.+.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 21 3334445555566666666665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.53 Score=36.12 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
...+....+.|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344445555555555555555554322 4455555555555555555555555555555555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.25 Score=43.25 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV---DSNYVLL 424 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 424 (509)
..|+.-+.. .+.|++..|...|... ..-|+ ...+.-|..++...|++++|..+|..+.+..|+. |..+.-|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 357766654 4667799999999876 22222 2244557899999999999999999999988774 4569999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 010496 425 ANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 425 ~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.9 Score=37.43 Aligned_cols=221 Identities=19% Similarity=0.109 Sum_probs=139.5
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 194 GYFEEALECFREMQISGVE-PDYVTIISVLNACANVGTLGIGLWIHRYVLKQ-DFKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555555443211 12445555666666677777766666666542 224455566666666677777777777
Q ss_pred HHHhccCC--C-hhhHHHHHH-HHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 010496 272 VFQRMHKR--T-LVSWNSIIV-GFAVNGFVGEALEYFNSMQKEGF--KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345 (509)
Q Consensus 272 ~~~~~~~~--~-~~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 345 (509)
.+...... + ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 77766542 1 122333333 67788888888888888755211 11233344444446677888999998888884
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 346 YRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 346 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....+.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2233 3667777888888888899998888776 44454 445555555555777799999999999888776
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.8 Score=37.24 Aligned_cols=27 Identities=4% Similarity=-0.084 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcC
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMR 145 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (509)
..|.....+|-...++++|...+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344445555666666776666555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.9 Score=40.14 Aligned_cols=160 Identities=12% Similarity=0.079 Sum_probs=86.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
.++.-.-+..+...-+++-++..+ +.|+-.+.-.++ +--......++++++++..+.|- ..+. +..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhh
Confidence 344444556666666666666666 456543322222 22234557888888888877651 0010 000
Q ss_pred CHHHHHHHHHhccCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 010496 265 CIEFARQVFQRMHKRT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 265 ~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
..+..-..++....++ ..+-..+..++-+.|+.++|++.+++|.+....- +......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0000001111122222 2334456666777888888888888887652221 2335567888888888888888888
Q ss_pred HHhHHhcCCCCC-HHHHHHHH
Q 010496 340 DIMKKIYRVSPR-IEHYGCIV 359 (509)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~li 359 (509)
.+-. +...+.+ ..+|+..+
T Consensus 319 ~kYd-Di~lpkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYD-DISLPKSATICYTAAL 338 (539)
T ss_pred HHhc-cccCCchHHHHHHHHH
Confidence 8765 2222222 44555544
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.5 Score=37.61 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=70.1
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh-h---hHHHHHHHHHhCCChHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL-V---SWNSIIVGFAVNGFVGE 299 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~ 299 (509)
.....|++..|..+|....... +-+...-..++.+|...|+.+.|..++..+..... . ....-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4566778888888888877765 44566677788888888888888888888764311 1 11223344444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 300 ALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 300 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+=.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444333 33 44444556666667777777765554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.17 Score=45.04 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.++..++..+...|+++.+.+.+++++..+|-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35566677777788888888888888888888888888888888888888888888887765
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.19 Score=41.58 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=68.4
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKPN------EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
-+...|++++|..-|.+. ...|. ...|..-..++.+.+..+.|+.-..++++++|....+...-+.+|-+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 456777888887777665 22221 23455556678889999999999999999999888888888889999999
Q ss_pred chHHHHHHHHHHhCC
Q 010496 434 WDGAGKIRRTMKGRG 448 (509)
Q Consensus 434 ~~~A~~~~~~m~~~~ 448 (509)
+++|++-|+++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987753
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.31 Score=42.59 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=78.9
Q ss_pred HHHHHHhcc--CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 010496 269 ARQVFQRMH--KRTLVSWNSIIVGFAV-----NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG----------- 330 (509)
Q Consensus 269 a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----------- 330 (509)
....|..+. ++|..+|...+..|.. .+..+=....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 5677777777777754 3456666677888889999999999999998765432
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHhC
Q 010496 331 -----LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE-DALNVVENM 378 (509)
Q Consensus 331 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~ 378 (509)
+-+-+++++++|. .+|+.||..+-..|+.++.+.+-.- +..++.-.|
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345789999999 7899999999999999998887643 344444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=5.6 Score=40.38 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=84.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCC---CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNP---NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (509)
-|..+.+.+.+++|++.-+.-.. ..| -.......+..+... +++..|....-.|... +...|..-+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~--~~y~~Aas~~p~m~gn-----~~~eWe~~V~~ 432 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFE--GKYDEAASLCPKMLGN-----NAAEWELWVFK 432 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhc--chHHHHHhhhHHHhcc-----hHHHHHHHHHH
Confidence 37778889999999988777654 333 233455566666555 7777777766555433 25566666666
Q ss_pred HHhcCCchHHHHHHHhcCC-CChHHHHHHHHHHHhCCCHHHHHHHHhcCC-------------C-------CCHhHHHHH
Q 010496 128 YAKFGRMDLATVVFDAMRV-KSSFTWNAMIDGYMRRGDIESAVRMFDEMP-------------V-------RDAISWTAL 186 (509)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~-------~~~~~~~~l 186 (509)
+...++......++=.-.. -++..|..++..+.. .+...-.++.++-. + .+...-..|
T Consensus 433 f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~L 511 (846)
T KOG2066|consen 433 FAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVL 511 (846)
T ss_pred hccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHH
Confidence 6666665544333222222 256677777777766 33333333332221 0 022233346
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 010496 187 LNGFVKRGYFEEALECFREMQ 207 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~ 207 (509)
+..|...+++..|+.++-..+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc
Confidence 777777777777777765554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.077 Score=30.01 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+|..+...+...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.7 Score=36.66 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDS---NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+-|.+.|.+..|..-++.+++.-|+.+. .+..+..+|...|-.++|.+.-+-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345688999999999999999998766433 5777888999999999998887666544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+..+...+...|++++|.+.+++++++.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666777777777777777666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.53 Score=36.27 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 383 NEVVLGSLLAACRTKG---DIILAERLMKYLVD-LDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
...+--.+.+++.+.. +..+.+.+++...+ ..|. .......|+.++.+.+++++++++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444455554443 34445556666654 2232 223445556666666666666666666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.2 Score=40.60 Aligned_cols=220 Identities=14% Similarity=0.131 Sum_probs=141.2
Q ss_pred HHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC---HhHHHHHHHHHHc
Q 010496 159 YMRRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQISG--VEPD---YVTIISVLNACAN 227 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~---~~~~~~l~~~~~~ 227 (509)
+....+.++|+..+.....+ --.++..+..+.+..|.+++++..--.-...- .... -..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888766544 13356667778888888888776532221110 1111 2345555566666
Q ss_pred cCCHHHHHHHHHHHHHc-CCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhhHHHHHHHHHhC
Q 010496 228 VGTLGIGLWIHRYVLKQ-DFK---DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----R----TLVSWNSIIVGFAVN 294 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~ 294 (509)
.-++.+++.+-..-... |.. ........+..++...+.++++++.|+...+ . ...++-.+.+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666665554432 211 1234556678888888899999999988652 1 335789999999999
Q ss_pred CChHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHhccCCHHHHHHHHHHhHHh---cCCCC-CHHHHHHHHHH
Q 010496 295 GFVGEALEYFNSMQK----EGFKPDGVSFTG-----ALTACSHAGLIEDGLRYFDIMKKI---YRVSP-RIEHYGCIVDL 361 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~----~g~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~ 361 (509)
.++++|.-+..+..+ .++.--..-|.. +.-++...|....|.+..++..+. .|..+ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988777654 233222222332 334677888888888888877642 23332 23445667888
Q ss_pred HHhcCChHHHHHHHHhC
Q 010496 362 YSRAGRLEDALNVVENM 378 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~ 378 (509)
|...|+.+.|+.-++..
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 99999999998888764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=3.8 Score=39.18 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHH---HcCCCCcHhHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVL---KQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 231 ~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 261 (509)
.+.|..+|.+.+ ..+ |.....|..+..++.
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~ 306 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHM 306 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHH
Confidence 466777777777 332 333555555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.2 Score=33.92 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHH
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 299 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (509)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444555555666666666666554 355556666666666542 2333333331 1122223334444444444444
Q ss_pred HHHHHHH
Q 010496 300 ALEYFNS 306 (509)
Q Consensus 300 A~~~~~~ 306 (509)
+.-++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.085 Score=29.94 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATV 139 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (509)
.|+|+.+|+.|..+|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 58899999999999999999998863
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.6 Score=35.97 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=33.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDG---VSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 344566777777777777777765 22222 234445556667777777666555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.12 E-value=6.4 Score=40.35 Aligned_cols=175 Identities=13% Similarity=0.134 Sum_probs=88.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCHhH----HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPVRDAIS----WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 227 (509)
...-++.+.+...++-|..+-+.-..+ ..+ ...-..-+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 334455556666666666665543322 222 122233345566777776666554432 2222 22334444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh--hHHHHHHHHHhCCChHHHHHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV--SWNSIIVGFAVNGFVGEALEYFN 305 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~ 305 (509)
..+...-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 4455555566666666663 345555666777777777777666666555 2211 13344445555555555554443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 306 SMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 306 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+... +......++ -..+++++|.++++.+.
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 3221 223333332 34566777776665543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=7.9 Score=39.16 Aligned_cols=274 Identities=11% Similarity=0.034 Sum_probs=158.0
Q ss_pred HHHHHHHHhcCCCC-CHhHHHHHHHHH-----HHcCChHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHHccC--
Q 010496 165 IESAVRMFDEMPVR-DAISWTALLNGF-----VKRGYFEEALECFREMQI-------SGVEPDYVTIISVLNACANVG-- 229 (509)
Q Consensus 165 ~~~A~~~~~~~~~~-~~~~~~~li~~~-----~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 229 (509)
...|.++++..... +...-..+..+| ....+.+.|+.+|+.+.. .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 56788888776554 444444444433 345688999999988876 44 2334555666665532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhccCC-ChhhHHHHHHHHHh----CCChHHH
Q 010496 230 ---TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR-CGCIEFARQVFQRMHKR-TLVSWNSIIVGFAV----NGFVGEA 300 (509)
Q Consensus 230 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A 300 (509)
+.+.|..++.+..+.| .|+.......+..... ..+...|.++|....+. .+..+-.+..+|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 6678999999998888 4555444333322222 24577899999887754 33443333333332 3468889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH---Hh----cCChHHHHH
Q 010496 301 LEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY---SR----AGRLEDALN 373 (509)
Q Consensus 301 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~~A~~ 373 (509)
..++.+..+.| .|....-...+..+.. +..+.+.-.+..+. ..+.+.....-..+.... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999988887 3333322333334444 66666666655555 233322111111111111 11 124556666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-C--CchHHHHHHHHHHh
Q 010496 374 VVENMPMKPNEVVLGSLLAACRTK----GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV-G--KWDGAGKIRRTMKG 446 (509)
Q Consensus 374 ~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 446 (509)
++.+....-+......+...|..- .+++.|...+..+...+ ......++..+-.. | .+..|.+++++..+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 666665455666666666554332 35888888888887766 45566666655432 1 16778888877766
Q ss_pred CC
Q 010496 447 RG 448 (509)
Q Consensus 447 ~~ 448 (509)
.+
T Consensus 538 ~~ 539 (552)
T KOG1550|consen 538 ED 539 (552)
T ss_pred cC
Confidence 43
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.75 Score=41.40 Aligned_cols=117 Identities=11% Similarity=-0.019 Sum_probs=93.5
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHH----HHHHHHHHHHhcCCH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM--PMKPNEV----VLGSLLAACRTKGDI 400 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~ 400 (509)
...|++.+|-..++++.+ ..+.|.-.+...-++|.-.|+.+.-...++++ ...||.. +-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346788888888999886 55667777777778899999998888888887 3355543 333344566789999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
++|++..+++.++++.+.-+...++..+-..|+++++.+...+-.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 999999999999999988888889999999999999999887654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.95 E-value=4 Score=35.73 Aligned_cols=224 Identities=17% Similarity=0.208 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCcHhH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQIS---GV--EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ-----DFKDNVKV 252 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 252 (509)
...++..+.+.|++++..+.|.+|..- .+ .-+....++++...+...+.+....+|+.-++. +-..=-.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344566677777777777777666431 11 123445556666555555555555555543321 00111123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCC---------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKR---------------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE-GFKPDG 316 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~ 316 (509)
-..|...|...+.+.+..++++++... -...|..=|..|....+-..-..+|++.+.. ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345777778888888887777776521 1235667777787777777777788776542 233444
Q ss_pred HHHHHHHHHH-----hccCCHHHHHHHHHHhHHhcCC--CCC-H--HHHHHHHHHHHhcCC----hHHHHHHHHhCCCCC
Q 010496 317 VSFTGALTAC-----SHAGLIEDGLRYFDIMKKIYRV--SPR-I--EHYGCIVDLYSRAGR----LEDALNVVENMPMKP 382 (509)
Q Consensus 317 ~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~-~--~~~~~li~~~~~~g~----~~~A~~~~~~~~~~p 382 (509)
.... +|+-| .+.|.+++|..-|=++.+.+.- .|. . --|..|..++.+.|- ..+|. -.+-.|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 4433 34433 4668888876443333322221 222 2 224455555555541 11110 012335
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.......|+.+|. .+++.+-.++++.-..
T Consensus 303 EIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 303 EILAMTNLVAAYQ-NNDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHhhhc
Confidence 5567788888774 4566666666555444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.43 Score=30.29 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCc
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGY 496 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 496 (509)
....++.++.+.|++++|.+..+.+.+. +|.+.+....-+.+.++|+..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567888999999999999999999875 67777888888888889988884
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.9 Score=41.16 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=36.2
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCC
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADF 93 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 93 (509)
.+.-.|- +|-.|.|.|++++|.++....... .......+...+..+...
T Consensus 110 ~~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3444565 788999999999999999666543 566677888889888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.13 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
+|..|+.+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888854
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.19 Score=30.51 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
++..+...|...|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.72 E-value=5.9 Score=37.36 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG----VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
...+|..++..+.+.|.++.|...+.++....+. .+.+...-+..+...|+..+|+..++......+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4457888889999999999999999998886532 456677788899999999999999988887433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.9 Score=33.24 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=69.9
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.-..++..+...+.+..+...++.+...+ ..+...++.++..+++. . ....... +... .+ ..-....++
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~--~-~~~ll~~---l~~~---~~-~yd~~~~~~ 77 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY--D-PQKEIER---LDNK---SN-HYDIEKVGK 77 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH--C-HHHHHHH---HHhc---cc-cCCHHHHHH
Confidence 34567888887888888888888888766 35666777777777654 2 1222222 2211 11 233344566
Q ss_pred HHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhC-CCHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRR-GDIESAVRMFDEMPVRDAISWTALLNGFV 191 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 191 (509)
.|.+.+-++++.-++.++.. +...+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 66666666666666655532 22223333333 5566666665542 24445555554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=3.7 Score=33.42 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=61.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHH-----HHHHHhcCC
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENMP-MKPNEVVLGSL-----LAACRTKGD 399 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-----~~~~~~~g~ 399 (509)
.+.+..++|..-|..+.+ .|...- +-............|+...|...|+++. ..|-+....-+ ...+...|.
T Consensus 69 A~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344556666666666652 232211 1111112233455666677777776662 22222222111 123456677
Q ss_pred HHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 400 IILAERLMKYLVDLD-PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 400 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
++....-.+.+..-+ |-....-..|+.+-.+.|++.+|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766665543321 11223455677777788888888888877755
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.13 E-value=4.1 Score=33.30 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=67.4
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCC--CHHHHHHHHhcCCCCCHhHHH
Q 010496 107 LVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG--DIESAVRMFDEMPVRDAISWT 184 (509)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~ 184 (509)
.+.+.++.|+ ...+..+++.+.+.|++....+++..-.-+|.......+-.+.... -..-|.+++.++. ..+.
T Consensus 19 Sl~~~~i~~~-~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~ 93 (167)
T PF07035_consen 19 SLNQHNIPVQ-HELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYE 93 (167)
T ss_pred HHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHH
Confidence 3344555555 6666777777777776666666665544444333333222222211 1344555555543 2345
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
.++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666777777777777776654221 112223455666666665555555554444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.8 Score=33.21 Aligned_cols=53 Identities=17% Similarity=0.029 Sum_probs=23.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
....|+.+.|++.|.+.... .+-....|+.-..++.-.|+.++|+.=+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444444444444432 122344444444444444444444444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=6.9 Score=35.49 Aligned_cols=50 Identities=12% Similarity=0.033 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCC
Q 010496 146 VKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 195 (509)
.+|..+....+.++...|..+-...+...+..+|+..-...+.++.+.|.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 33444444444444444432222222222233344444444444444444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.58 E-value=14 Score=38.05 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=65.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchH
Q 010496 57 RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDL 136 (509)
Q Consensus 57 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (509)
+.|++++|...|-+-... +.|. .++.-+... .....-...++.+.+.|+.- ..--..|+.+|.+.++.++
T Consensus 380 ~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda--q~IknLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA--QRIKNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred hcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH--HHHHHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHH
Confidence 455566655555554431 2221 123333222 33333344444555555443 2333556777777777776
Q ss_pred HHHHHHhcCCCChH--HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010496 137 ATVVFDAMRVKSSF--TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREM 206 (509)
Q Consensus 137 A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 206 (509)
-.+..+... .... -....+..+.+.+-.++|.-+-..... +... +-..+-..+++++|++++..+
T Consensus 450 L~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 666665554 2111 133445555555555555555443332 2222 222334456677777766554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=5.9 Score=33.63 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+-..-+...-.|-...|..++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3456666666666666666666666666543222222222222 233346666666555554432222232223322221
Q ss_pred HHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHHcC
Q 010496 361 LYSRAGRLEDALNVV-ENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV-------DSNYVLLANMYAAVG 432 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 432 (509)
..-++.+|..-+ ++.. ..|..-|...+-.+. .|++. ...+++++..-..++ ..+|..|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 222444444333 2221 122222322222211 11111 112222222211111 236777777777888
Q ss_pred CchHHHHHHHHHHhCCC
Q 010496 433 KWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~~~ 449 (509)
+.++|..+|+-.+..++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 88888888877666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.3 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788899999999999999998554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=8.1 Score=35.04 Aligned_cols=212 Identities=13% Similarity=0.048 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCH----HHHHHHHhcC--CCCCHhHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI----ESAVRMFDEM--PVRDAISWTALLNGFV 191 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~li~~~~ 191 (509)
..+....+..+...|..+....+..-+..+|+..-...+.++++.|+. +++...+..+ ..++...-...+.++.
T Consensus 37 ~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG 116 (280)
T PRK09687 37 SLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATG 116 (280)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 445555555555555433333333333344555555555555555542 3455555443 3334444444444444
Q ss_pred HcCCh-----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-C
Q 010496 192 KRGYF-----EEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-C 265 (509)
Q Consensus 192 ~~~~~-----~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 265 (509)
..+.. ..+.+.+..... .++...-...+.++.+.++ ..+...+-.+.+. ++..+-...+.++.+.+ +
T Consensus 117 ~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 117 HRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred cccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCC
Confidence 33211 122232222222 2233333444455555544 2344444444432 23333333444444332 1
Q ss_pred HHHHHHH-HHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 266 IEFARQV-FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 266 ~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
...+... ...+..++..+....+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 1222222 222334444555555555555554 23444444433321 1 122344455555553 3555555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.40 E-value=3.5 Score=33.55 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=8.3
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010496 393 ACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~ 411 (509)
+-.+.|++..|...|..+.
T Consensus 176 Aa~kagd~a~A~~~F~qia 194 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHhccchHHHHHHHHHHH
Confidence 3334444444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.1 Score=35.34 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 365 AGRLEDALNVVENM-PMKPNEVVLGS-LLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
.++++++..+++.+ .++|+..-... -...+...|++.+|.++++.+.+..+..+..-..++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 55556666665555 23443221111 12234555666666666666555444433333333333333343
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.24 E-value=6.9 Score=33.67 Aligned_cols=55 Identities=4% Similarity=-0.136 Sum_probs=32.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCch-------HHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSN-------YVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.--...+++.+|+.+|++......+++.. +..-+.++.-..+.-.+...+++-.+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 33456789999999999998876665432 22222333333444445555554443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.4 Score=32.15 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+.+...+ .|..+++-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHHH
Confidence 4466777777777888999999999999999999999999999999876654433 67766643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.3 Score=35.62 Aligned_cols=72 Identities=26% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 362 YSRAGRLEDALNVVENM-PMKPNEVVLGSL-LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
-.+.++.+++..++..+ .++|.......+ ...+...|++.+|.++++.+.+..|..+..-..++.++...|+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 34567888888888777 356654433222 3346778888888888888777666655555555555555554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.97 E-value=4.6 Score=33.65 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG--VSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 284 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..+...|++.|+.+.|++.|.++.+....+.. ..+..+|......+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344444555555555555555555444333222 233344444555555555555555444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.7 Score=31.39 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45567777888888888999999999999999999999999999988854443 4446666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=6.9 Score=32.66 Aligned_cols=127 Identities=8% Similarity=-0.013 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHccCCHHHHHHHHHHHHHcCCC--CcHhHHHHHHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII--SVLNACANVGTLGIGLWIHRYVLKQDFK--DNVKVCNTLID 258 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 258 (509)
|..++.... .+.+ +.....+++...+-......+. .+...+...+++++|...++..+..-.. ....+-..|..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLAr 134 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLAR 134 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 444444433 3333 4455555555532111122222 2344567778888888777776643111 11223334566
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhh--HHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010496 259 LYSRCGCIEFARQVFQRMHKRTLVS--WNSIIVGFAVNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g 311 (509)
.....|.+++|+..++....++-.. ...-...+...|+-++|..-|.+.+..+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 7777788888888888777664332 4444567777888888888888877764
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.41 Score=26.84 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
+|..+...+...|++++|.+.|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555666666666666666666666555
|
... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.36 E-value=3.8 Score=34.17 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
..+..+...|.+.|+.+.|++.|.++......+. ...+-.+++.....+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556677777777777777777777766543333 23445566666677777777666665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.36 E-value=19 Score=36.89 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCh
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 281 (509)
.-..|+..|...+++..|+..+-.+.++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 344488888888888888888887776544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.20 E-value=6.9 Score=31.61 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=56.3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP-MKPNEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
-.+.++.+++..++..+.-...-.+...++. ...+...|++.+|.++|+++. ..|....-..|+..|....+-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 3456778888888877773222222233333 334667788888888888873 3344444445555555444333333
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
..-.++.+.++++ .-..++..+....+...|..
T Consensus 98 ~~A~evle~~~d~--~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGADP--DARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCCh--HHHHHHHHHHHhccccchhh
Confidence 4444455544432 22334444444444444333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.43 Score=42.93 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=70.4
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMK-PNEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 400 (509)
+-|.+.|.+++|++.|.+.. ...| +.+++..-..+|.+..++..|..-.... .+. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45889999999999999887 3445 7888888888999999998887665554 111 1223555555555667899
Q ss_pred HHHHHHHHHHHhcCCCCCch
Q 010496 401 ILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~ 420 (509)
.+|.+-++.++++.|.+...
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 99999999999999985443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.04 E-value=8.2 Score=32.22 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=36.2
Q ss_pred HHHHhcCCchHHHHHHHhcCC-CChHHH-----HHHHHHHHhCCCHHHHHHHHhcCCCCCHhH--HHHHHHHHHHcCChH
Q 010496 126 DMYAKFGRMDLATVVFDAMRV-KSSFTW-----NAMIDGYMRRGDIESAVRMFDEMPVRDAIS--WTALLNGFVKRGYFE 197 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 197 (509)
..+...|++++|+..++.... +....+ -.|.......|.+|+|+.+++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 334445555555555554431 211111 122333444455555555555444442221 222334445555555
Q ss_pred HHHHHHHHHHHc
Q 010496 198 EALECFREMQIS 209 (509)
Q Consensus 198 ~A~~~~~~m~~~ 209 (509)
+|..-|++..+.
T Consensus 177 ~Ar~ay~kAl~~ 188 (207)
T COG2976 177 EARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHc
Confidence 555555554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.96 E-value=9.6 Score=32.84 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHH---HHHH---HHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHH
Q 010496 357 CIVDLYSRAGRLEDALNVVENMP---MKPNEVVLG---SLLA---ACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLA 425 (509)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~---~l~~---~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 425 (509)
-....-...+++.+|+++|++.. ...+..-|. .++. ++....+.-.+...+++..+.+|. +..-+..|-
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 33444456788888999888762 222221111 1111 122336777788888888888887 333344443
Q ss_pred H
Q 010496 426 N 426 (509)
Q Consensus 426 ~ 426 (509)
.
T Consensus 239 ~ 239 (288)
T KOG1586|consen 239 D 239 (288)
T ss_pred H
Confidence 3
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.93 E-value=18 Score=35.84 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=88.1
Q ss_pred CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHH
Q 010496 79 NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAM 155 (509)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 155 (509)
+...+..++.--... .....++.++..++..- |--...|...+..=.+.|..+.+.++|++-..- +...|...
T Consensus 44 ~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSI--EDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCch--hHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445566667655444 55577777777777552 543445556666667889999999999988753 55566655
Q ss_pred HHHHH-hCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 156 IDGYM-RRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 156 ~~~~~-~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
+..+. ..|+.+...+.|+....- +...|...|..-..++++.....+++..++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 54443 457788888888766532 456677788777888899999999999887
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.85 E-value=5.4 Score=33.36 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=62.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPR---IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDI 400 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 400 (509)
+...|++++|..-|..+.....-.+. ...|..-..++.+.+.++.|+.-..+. .+.|. ...+..-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45567777777777666642221111 223444445566677777776655443 45553 22344445678888889
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
++|++-|+++.+.+|....+-...++.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999988866555554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.39 Score=26.87 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 419 SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..+..++.+|.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.64 E-value=13 Score=33.92 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh--cC----CHHHHHHHHHhccCC-------ChhhHHHHHHHHHhCCC--
Q 010496 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR--CG----CIEFARQVFQRMHKR-------TLVSWNSIIVGFAVNGF-- 296 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~-- 296 (509)
++...+++.+.+.|+..+..+|-+....... .. ...+|.++|+.|++. +-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3444556666666665555544443222222 11 234566666666642 33344444332 2222
Q ss_pred --hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 297 --VGEALEYFNSMQKEGFKPDGV--SFTGALTACSHAGL--IEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 297 --~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
.+.++.+|+.+.+.|+..+.. ....++..+..... ...+..+++.+. +.++++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 356777788888777665433 33333332222211 346777788887 5677777666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.32 E-value=3.6 Score=36.79 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHhHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK-----QDFKDNVKVCNT 255 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 255 (509)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566667777777777777777777653 34666777777777777777777777766554 466666665554
Q ss_pred HHHH
Q 010496 256 LIDL 259 (509)
Q Consensus 256 l~~~ 259 (509)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.98 Score=25.28 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3556666666677777777777666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.56 E-value=15 Score=32.86 Aligned_cols=61 Identities=23% Similarity=0.139 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+++.....|...|.+.+|.++.++++..+|-+...+..++..+...|+--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3344456789999999999999999999999999999999999999998888888887754
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.4 Score=36.42 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=73.6
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-Ch-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-TL-----VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 317 (509)
.|.+....+...++..-....+++.+..++-++... +. .+-..++..+ -.=+.++++.++..=+..|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 455666677777777777778888888888777632 11 1112222222 2346678888888888899999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+++.+++.+.+.+++.+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888887764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.05 E-value=11 Score=30.80 Aligned_cols=137 Identities=11% Similarity=0.051 Sum_probs=88.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhc
Q 010496 65 ALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAM 144 (509)
Q Consensus 65 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 144 (509)
.+.++.+.+.|+.|+...|..++..+.+. +... .+.++...++-+|+..+-..|+..- +....+.++--.|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~--~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRN--GQFS----QLHQLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHH----HHHHHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHH
Confidence 45666677788899988999999998887 6544 3445566777777555544443322 2333344433333
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 010496 145 RVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISG 210 (509)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 210 (509)
..+=...+..++..+...|++-+|+++.+.....+......++.+..+.++...-..+|+-....+
T Consensus 85 LkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 85 LKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 333223456677788889999999999887655554555667777777777766666666665543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.61 Score=24.41 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.49 Score=37.90 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 186 LLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++. .+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555566667777777777777655445566677777777777666666666551 111222344555555666
Q ss_pred HHHHHHHHHhcc
Q 010496 266 IEFARQVFQRMH 277 (509)
Q Consensus 266 ~~~a~~~~~~~~ 277 (509)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666655555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.61 E-value=25 Score=34.20 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=25.9
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
|.....+++..++....+.-++.+..+|+.-| .+...|..++++|... ..+.-..+++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 33344444444444444445555555554443 2334444445555444 2233334444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.53 E-value=1.6 Score=39.52 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=61.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG 366 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 366 (509)
.+-|.++|.+++|+++|...+.. .| |.+++..-..+|.+...+..|+.-...+.... ..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 45699999999999999988774 55 88888888889999999998888777766210 011223333333333344
Q ss_pred ChHHHHHHHHhC-CCCCCH
Q 010496 367 RLEDALNVVENM-PMKPNE 384 (509)
Q Consensus 367 ~~~~A~~~~~~~-~~~p~~ 384 (509)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 555555555443 567763
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=42 Score=36.52 Aligned_cols=254 Identities=11% Similarity=-0.038 Sum_probs=156.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc-hHHHHHHHhc
Q 010496 66 LEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM-DLATVVFDAM 144 (509)
Q Consensus 66 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 144 (509)
..+-.++. .+|...-...+..+... +... +...+..... +++ ..+....+.++.+.+.. .....+...+
T Consensus 624 ~~L~~~L~---D~d~~VR~~Av~~L~~~--~~~~-~~~~L~~aL~---D~d-~~VR~~Aa~aL~~l~~~~~~~~~L~~~L 693 (897)
T PRK13800 624 AELAPYLA---DPDPGVRRTAVAVLTET--TPPG-FGPALVAALG---DGA-AAVRRAAAEGLRELVEVLPPAPALRDHL 693 (897)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHhhh--cchh-HHHHHHHHHc---CCC-HHHHHHHHHHHHHHHhccCchHHHHHHh
Confidence 34444443 56777777777777776 5433 3333333332 244 66667777777666432 2223333444
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010496 145 RVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224 (509)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 224 (509)
..+|+.+-...+.++...+..+ ...++..+..+|...-...+.++.+.+..+. +..+.. .++...-...+.+
T Consensus 694 ~~~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~a 765 (897)
T PRK13800 694 GSPDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKG 765 (897)
T ss_pred cCCCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHH
Confidence 5567777777777776544221 2345566677788777777888877665432 222332 4566666667777
Q ss_pred HHccCCHHH-HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHHhccCCChhhHHHHHHHHHhCCChHHHHH
Q 010496 225 CANVGTLGI-GLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR-QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 225 ~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
+...+..+. +...+..+.+ .++..+-...+.++...|....+. .+...+..++..+-...+.++...+. .++..
T Consensus 766 L~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 777665443 3445555554 356788888899999988866553 34455556777777778888887775 45666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 303 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
.+..+.. .|+...-...+.++.+......+...+..+.+
T Consensus 842 ~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6666664 56777767777777776444567777777763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.1 Score=24.65 Aligned_cols=25 Identities=24% Similarity=0.277 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 422 VLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 422 ~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..++.++.+.|++++|.+.|+++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444444444444444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=9.3 Score=36.54 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=71.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
...|+.-.|.+-+....+...-.|+.... ....+...|+++.+...+.... +.....+...++......|+.++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566655554444444333334443322 2233556677777777776652 3334556666777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...+.|+.....+++.....+..-...|-++++...++++...+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777777666666655555555555667777777777766544
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.02 E-value=8.5 Score=28.09 Aligned_cols=61 Identities=25% Similarity=0.404 Sum_probs=47.0
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 219 (509)
+..+...|++++|..+.+.+..||...|-+|.. .+.|..+++...+..|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456778999999999999998888888876654 46777788888888888877 55555553
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.5 Score=35.00 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCH
Q 010496 86 LLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165 (509)
Q Consensus 86 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (509)
++..+... +........++.+...+.. .+....+.++..|++.++.++...+++.... .-...++..|.+.|.+
T Consensus 13 vi~~~~~~--~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEER--NQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTT--T-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 34444444 5666666666666655533 3377777777777777777777776663322 2223455555555555
Q ss_pred HHHHHHHhcC
Q 010496 166 ESAVRMFDEM 175 (509)
Q Consensus 166 ~~A~~~~~~~ 175 (509)
++|.-++..+
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.97 E-value=1 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
++..|+..|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 577888888888888888888887764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.74 Score=25.45 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
+-.+..++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44567788899999999999998763
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.70 E-value=1.3 Score=24.75 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 419 SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999988763
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.63 E-value=22 Score=32.32 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=11.4
Q ss_pred HHcCChHHHHHHHHHHHH
Q 010496 191 VKRGYFEEALECFREMQI 208 (509)
Q Consensus 191 ~~~~~~~~A~~~~~~m~~ 208 (509)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356666777766666654
|
It is also involved in sporulation []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.08 E-value=20 Score=35.58 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYV 241 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (509)
.|+++.|..++..+++ ...+.++..+.+.|..++|+++- ..|+. -| ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh
Confidence 4555555555544442 22333444455555555554431 11111 11 1223445555555444332
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 242 LKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+....+-....+
T Consensus 664 ~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 664 N------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred c------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 1 233455555555555555555555554432 33344444444444433333333333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.99 E-value=18 Score=30.83 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh-hHHHHHH--HHHhCCChHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV-SWNSIIV--GFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m 307 (509)
+..|.-=|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+-. ++--.|++.-|.+-+.+.
T Consensus 81 ~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 333333344444332 444667777777777888888888888877765442 2222222 233457777777766665
Q ss_pred HHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHH-HHhHHhcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHhCCCC---
Q 010496 308 QKEGF-KPDGVSFTGALTACSHAGLIEDGLRYF-DIMKKIYRVSPRIEHYGCI-VDLYSRAGRLEDALNVVENMPMK--- 381 (509)
Q Consensus 308 ~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~--- 381 (509)
-.... .|-...|..+. -+.-++.+|..-+ ++.. + .+..-|... +..|.-.=..+.+.+-...-.-.
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 55421 22222232222 1223444554333 3333 2 233333332 22222222222222222221100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 382 ---PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 382 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.-..||-.|.+-+...|+.++|..+|+-++..+.-
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 11347777888889999999999999988876543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.57 E-value=12 Score=36.93 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=47.3
Q ss_pred hcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 010496 130 KFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 209 (509)
-.|+++.|..++..+.++ ..+.++..+-+.|-.++|+++-. |+.. -.....+.|+++.|.++..+..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~~-- 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEAN-- 664 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhhc--
Confidence 356666666665555522 22334444455555555555422 1111 1223345555555555543321
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 210 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
+..-|..|.++....+++..|.+.|.....
T Consensus 665 ----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 665 ----SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred ----chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 334455555555666666666655554443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.40 E-value=1.3 Score=23.10 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 010496 121 GTALLDMYAKFGRMDLATVVFD 142 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~ 142 (509)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=4.8 Score=36.04 Aligned_cols=63 Identities=21% Similarity=0.074 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
..+.+-.+|.+.++++.|.++.+.++...|+++.-+..-+..|.+.|.+..|..=++..++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456666789999999999999999999999999889999999999999999999999887763
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.2 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888889999999999999888876
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.65 E-value=9.3 Score=32.19 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=48.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHhcCCH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ---DFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
+.+.|+ +.|.+.|-++...+.--++.....|.. |....+.+++..++..+++. +-.+|+..+..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334443 567777777766654434444444443 33466777777777776654 2256677777777777777777
Q ss_pred HHHH
Q 010496 267 EFAR 270 (509)
Q Consensus 267 ~~a~ 270 (509)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.50 E-value=13 Score=33.61 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 332 IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
.++++.++..=. .+|+-||..+++.+++.+.+.+++.+|.++...
T Consensus 116 pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 116 PQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred hHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 344444444444 344444544445555555555544444444433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.38 E-value=1.8 Score=26.19 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 422 VLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 422 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999988654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.37 E-value=7.2 Score=28.25 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (509)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555566666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.46 E-value=40 Score=32.50 Aligned_cols=110 Identities=8% Similarity=0.054 Sum_probs=61.7
Q ss_pred cchhHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHH
Q 010496 96 QCLFLGAM-IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRM 171 (509)
Q Consensus 96 ~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 171 (509)
|+...|.+ +++-+....-.|+ ............|+++.+.+.+..... ....+...++....+.|+++.|..+
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 55544433 3333333322333 333344455667888888777766543 3555667777777778888888777
Q ss_pred HhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 172 FDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 172 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
-.-|... ++.............|-++++.-.+++...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 7665432 333333333334445566777766666654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.33 E-value=54 Score=33.82 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 395 RTKGDIILAERLMKYLVDLDPG---------VDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
+-.+++..|...++.+.+.... .+..+...+..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4578898999988888764321 12335555556667799999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.67 E-value=31 Score=30.97 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQK-----EGFKPDGVS 318 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~ 318 (509)
+++.....|..+|.+.+|..+.++...- +...|-.++..+...|+--.|.+-++.+.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3455667788888888888888887643 456788888888888887777777776643 355555443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.48 E-value=40 Score=32.70 Aligned_cols=275 Identities=7% Similarity=-0.015 Sum_probs=136.5
Q ss_pred hHHHHHHHH--cCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHH--HHHHHHHHHhCCCCC-------
Q 010496 48 WTSSISRHC--RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG--AMIHGLVCKLGLDRN------- 116 (509)
Q Consensus 48 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~------- 116 (509)
|..+-.++. .++.++..++++..+...|.......++.....+.+. +..... ++-++.+...-..|.
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt--~~tq~~~ll~el~aL~~~~~~~~~~~~gld 95 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKT--GCTQHSVLLKELEALTADADAPGDVSSGLS 95 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhc--ccchhHHHHHHHHHHHHhhccccchhcchh
Confidence 444444443 3577889999999998887666666666666655554 332221 111111111111111
Q ss_pred ---chHHHHHHHHHHHhcCCchHHHHHHHhcCCCC-------h-HHHHHHHHHHHhCCCHHHHHHHHhcCC---------
Q 010496 117 ---NVMVGTALLDMYAKFGRMDLATVVFDAMRVKS-------S-FTWNAMIDGYMRRGDIESAVRMFDEMP--------- 176 (509)
Q Consensus 117 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--------- 176 (509)
+...+......|....++..|+++......+. . .........+......++|+.++.-+.
T Consensus 96 ~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 96 LKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred hhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 12233333444455556666766666554321 1 111122333455556666666554221
Q ss_pred ---------------CCC------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHHcc
Q 010496 177 ---------------VRD------------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV-LNACANV 228 (509)
Q Consensus 177 ---------------~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~ 228 (509)
.|. ....---++.|.+..+...+..-.+.... +.-|...+..| -..+.-.
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~ 253 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAH 253 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHh
Confidence 000 00011112333333333333322222211 11122222222 2335567
Q ss_pred CCHHHHHHHHHHHHH---cCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------C----------
Q 010496 229 GTLGIGLWIHRYVLK---QDFKDN-----VKVCNTLIDLYSRCGCIEFARQVFQRMHK-----------R---------- 279 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~---------- 279 (509)
|++.+|.+++...-- .|...+ ...+|.|...+.+.|.+..+..+|.+..+ +
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nk 333 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNK 333 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhccc
Confidence 888888877654321 121111 12346666666777777777777666542 1
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 280 -TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 280 -~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
-..+||. .-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 334 s~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 334 SMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred chhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1123332 34577789999999999888775 56678888888888763
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.36 E-value=8.3 Score=28.27 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ 244 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (509)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556677777777777777777777777777666544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.27 E-value=17 Score=32.31 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=47.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR---- 262 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 262 (509)
|.+++..|+|.+++...-+-.+.--+.-.......|-.|++.+.+..+.++-...++.--..+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777766555433211112334444455566777777666666665554223333346655555544
Q ss_pred -cCCHHHHHHHH
Q 010496 263 -CGCIEFARQVF 273 (509)
Q Consensus 263 -~g~~~~a~~~~ 273 (509)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.03 E-value=33 Score=30.36 Aligned_cols=151 Identities=9% Similarity=0.041 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHccCCHHHHHHHHHHHHHc---CC--CCcHhHHHHHHHHHHhcC
Q 010496 193 RGYFEEALECFREMQISGVEPDYV---TIISVLNACANVGTLGIGLWIHRYVLKQ---DF--KDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g 264 (509)
...+++|+.-|++..+..-.-... ....++....+.+++++....|.+++.- .+ .-+....|.+++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346777777777776642122222 3334566677777777777777766531 11 123344555555555555
Q ss_pred CHHHHHHHHHhccC-----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CC-------HHHHHHHHH
Q 010496 265 CIEFARQVFQRMHK-----RTL----VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK----PD-------GVSFTGALT 324 (509)
Q Consensus 265 ~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~----p~-------~~~~~~li~ 324 (509)
+.+-..++|+.-.+ .+. .|-.-+...|...+.+.+..++++++...--. -| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 54444444433221 111 12234555566666666666666665543111 11 123444455
Q ss_pred HHhccCCHHHHHHHHHHhH
Q 010496 325 ACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~ 343 (509)
.|....+-.+-..++++..
T Consensus 200 mYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhcccHHHHHHHHHHH
Confidence 5555555555555555554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.81 E-value=1.1e+02 Score=36.26 Aligned_cols=140 Identities=9% Similarity=0.024 Sum_probs=87.2
Q ss_pred cchhHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCchHHHHHHHh-cCCCChHHHHHHHHHHHhCCCHHHHHHHHh
Q 010496 96 QCLFLGAMIHGLVCKLGLDR-NNVMVGTALLDMYAKFGRMDLATVVFDA-MRVKSSFTWNAMIDGYMRRGDIESAVRMFD 173 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 173 (509)
+.+..|...++.-.....+. .....+..+...|+..+++|...-+... ...++ ...-|-.....|+++.|...|+
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye 1473 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYE 1473 (2382)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHH
Confidence 55566666665520000000 0134455566689999999888877763 33333 2233445667899999999999
Q ss_pred cCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHHccCCHHHHHHHHH
Q 010496 174 EMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV-LNACANVGTLGIGLWIHR 239 (509)
Q Consensus 174 ~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~ 239 (509)
.+.+. ...+++-++......|.++.++-..+-.... ..+....++.+ +.+.-+.++++.....+.
T Consensus 1474 ~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1474 RLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88765 3557888888888888888888766665543 23333344333 445567778877777665
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.16 E-value=3.5 Score=21.79 Aligned_cols=29 Identities=31% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
+..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444455555555555555555554443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.06 E-value=3.1 Score=26.43 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999987543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.82 E-value=20 Score=30.32 Aligned_cols=73 Identities=14% Similarity=0.031 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCChHHH
Q 010496 298 GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV--SPRIEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 371 (509)
+.|.+.|-++...+.--++.....|..-| -..+.++++.++.++.+...- .+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443332333333333222 234455555555444432111 23444555555555555555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.19 E-value=72 Score=32.42 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHH-----HHhcCCHHHHHHHHHhccC--------CChhhHHHHHHHHHhCC--
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDL-----YSRCGCIEFARQVFQRMHK--------RTLVSWNSIIVGFAVNG-- 295 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~-- 295 (509)
...+.++++...+.| +......+..+ +....+.+.|+.+|+.+.+ -.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345666666666655 22222222222 2234566666666665533 13344555555555532
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 010496 296 ---FVGEALEYFNSMQKEGFKPDGVSFTGALTACSH-AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR----AGR 367 (509)
Q Consensus 296 ---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 367 (509)
+.+.|..++.+....|. |+...+...+.-... ..+...|.++|.... ..|.. ..+-.+..+|.. ..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa-~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAA-KAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHH-HcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 45567777777766653 344443333222222 234567777777766 33332 222222222222 234
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 368 LEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 368 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+.|..++++.- ..|....-...+..+.. +.++.+.-.+..+.+.+..
T Consensus 380 ~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 556666665541 12221111222222222 5555555555555554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 6e-11
Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 11/119 (9%)
Query: 122 TALLDMYAKFGRMDLATVVFDAMRVK----SSFTWNAMIDGYMRRGDIESAVRMFDEM-- 175
LL +D+ A + + A +
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 176 -----PVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG 229
+ + A++ G+ ++G F+E + ++ +G+ PD ++ + L
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 2e-09
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 9/137 (6%)
Query: 254 NTLIDLYSRCGCIEFARQVFQRMHKR-------TLVSWNSIIVGFAVNGFVGEALEYFNS 306
+ A + H + TL +N++++G+A G E +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGL-RYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365
++ G PD +S+ AL + R + M + + ++ RA
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF-TAVLLSEEDRA 249
Query: 366 GRLEDALNVVENMPMKP 382
L+ V + P
Sbjct: 250 TVLKAVHKVKPTFSLPP 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 3e-09
Identities = 20/169 (11%), Positives = 56/169 (33%), Gaps = 8/169 (4%)
Query: 204 REMQISGVEPDYVTIISVLNACANVGTLG---IGLWIHRYVLKQDFKDNVKVCNTLIDLY 260
+ + + +++ C L L +H ++ + + N ++ +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 261 SRCGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVGEALE-YFNSMQKEGFKPD 315
+R G + V + L+S+ + + +E M +EG K
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR 364
+ L+ A +++ + ++ P + + D+Y++
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 18/194 (9%), Positives = 54/194 (27%), Gaps = 12/194 (6%)
Query: 32 SIQTNNSKSTVNPTVQWTSSISRHC-RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGC 90
++ ++ +P + + + + + + + + + C
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 91 A---DFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK 147
P L HG K L + + A++ +A+ G V ++
Sbjct: 138 LLTDQLPLAHHLLVVH-HGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 148 S----SFTWNAMIDGYMRRGDIESAV-RMFDEMPVRDAISWTALLNGFVKRGYFEEALEC 202
++ A + R+ + R ++M + L+
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 203 FREMQISGVEPDYV 216
+++ + P +
Sbjct: 255 VHKVKPTFSLPPQL 268
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 5e-05
Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 9/166 (5%)
Query: 123 ALLDMYAKFGRMDLATVVFD-AMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEM--- 175
DM D A +++ A+ K+ + A D R E +++ +
Sbjct: 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 176 -PVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234
+ + + + + + F++ + +V + + L +
Sbjct: 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188
Query: 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280
I LK+ + D + ID S R +F+R+
Sbjct: 189 FKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 34/254 (13%), Positives = 76/254 (29%), Gaps = 23/254 (9%)
Query: 194 GYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL---KQDFKDNV 250
G +++ + + ++ P+ V A + + VL K +
Sbjct: 13 GSYQQCINEAQ--RVKPSSPERDVERDVFLYRAY-----LAQRKYGVVLDEIKPSSAPEL 65
Query: 251 KVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII-----VGFAVNGFVGEALEYFN 305
+ + + + R R++ N+ + + AL +
Sbjct: 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 306 SMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365
V ++ + M+ + + V L +
Sbjct: 126 QGDSLECMAMTVQ------ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179
Query: 366 GRLEDALNVVENMPMK-PNEVVLGSLLAACRTK-GDIILAERLMKYLVDLDPGVDSNYVL 423
+L+DA + + M K ++L + AAC G AE +++ +D D G +
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 424 LANMYAAVGKWDGA 437
L + +GK
Sbjct: 240 LVVLSQHLGKPPEV 253
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 509 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.99 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.83 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.77 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.45 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.42 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.37 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.23 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.22 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.2 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.12 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.04 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.02 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.97 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.89 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.77 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.71 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.63 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.52 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.23 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.0 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.92 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.85 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.71 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.52 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.27 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.04 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.04 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.99 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.82 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.53 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.24 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.1 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.45 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.19 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.08 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.92 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.82 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.8 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.75 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.41 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.04 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.59 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.33 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.32 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.1 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.78 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.15 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.14 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.77 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.5 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.43 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.27 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 88.13 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.66 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.43 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.41 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 85.88 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.23 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 81.5 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=307.42 Aligned_cols=396 Identities=10% Similarity=-0.060 Sum_probs=346.4
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
.+.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..++... |+.+.|..++..+... |.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~---~~~~~ 151 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT--GDYARAKCLLTKEDLY---NRSSA 151 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT--TCHHHHHHHHHHTCGG---GTCHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc--CcHHHHHHHHHHHhcc---ccchh
Confidence 3457888999999999999999999999999986 568888999999999999 9999999999887654 34489
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCCCC-------------------hHHHHHHHHHHHhCCCHHHHHHHHhcCC----
Q 010496 120 VGTALLDMYAKFGRMDLATVVFDAMRVKS-------------------SFTWNAMIDGYMRRGDIESAVRMFDEMP---- 176 (509)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 176 (509)
+++.++.+|.+.|++++|+++|+++...+ ..+|+.++.+|.+.|++++|.++|+++.
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999654433 7789999999999999888888877652
Q ss_pred --------------------------------------------------------------------C--CCHhHHHHH
Q 010496 177 --------------------------------------------------------------------V--RDAISWTAL 186 (509)
Q Consensus 177 --------------------------------------------------------------------~--~~~~~~~~l 186 (509)
. ++..+|+.+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 1 356678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
+..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 888899999999999999988765 4467788888889999999999999999988765 67888999999999999999
Q ss_pred HHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 267 EFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 267 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 3467899999999999999999999999999863 4477899999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-------PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 53 2447889999999999999999999999887 44777 7899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 415 PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 415 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=284.21 Aligned_cols=378 Identities=11% Similarity=-0.001 Sum_probs=319.4
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc
Q 010496 55 HCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM 134 (509)
Q Consensus 55 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (509)
+.+.|....+...+..+. .++...|+.++..+.+. |+++.|..++..+.... |+ ..++..++.+|.+.|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~ 133 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDIT--GN-PNDAFWLAQVYCCTGDY 133 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH--CC-HHHHHHHHHHHHHTTCH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHhhC--CC-chHHHHHHHHHHHcCcH
Confidence 445666666666666553 36788999999999999 99999999999998664 66 68889999999999999
Q ss_pred hHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------CHhHHHHHHHHHHHc
Q 010496 135 DLATVVFDAMR--VKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-------------------DAISWTALLNGFVKR 193 (509)
Q Consensus 135 ~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~ 193 (509)
++|+.+|+++. .++..+++.++.+|.+.|++++|.++|+++.+. +..+|+.++.+|.+.
T Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 134 ARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999999994 568999999999999999999999999965444 388999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHH--------------------------------------HHHHHccCCHHHHH
Q 010496 194 GYFEEALECFREMQISGVEPDYVTIISV--------------------------------------LNACANVGTLGIGL 235 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------------------------------~~~~~~~~~~~~a~ 235 (509)
|++++|.++|++|.+.+ +.+...+..+ +..|.+.|++++|.
T Consensus 214 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99999999999998864 2233333322 44566789999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010496 236 WIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312 (509)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 312 (509)
++|+++.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|..++.++.+.|++++|..+++++.+. .
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 369 (597)
T 2xpi_A 293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-H 369 (597)
T ss_dssp HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-C
Confidence 999998876 6889999999999999999999999999986 347789999999999999999999999999975 3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 010496 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSL 390 (509)
Q Consensus 313 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 390 (509)
+.+..++..++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++ ...| +..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 457889999999999999999999999999852 2346889999999999999999999999987 3344 78899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+|.+.|++++|.++|+++.+..|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=233.66 Aligned_cols=372 Identities=13% Similarity=0.135 Sum_probs=314.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcc-cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHI-TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYA 129 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (509)
+...+.+.|++++|+..+..+.+. .|+.. .+..+...+... ++.+.|...+....+.. |.+..++..+..+|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 456778899999999999999874 56554 444444555666 89999999999888874 777999999999999
Q ss_pred hcCCchHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 130 KFGRMDLATVVFDAMR--VK-SSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+.|++++|+..|+++. .| +..+|..+..++.+.|++++|.+.|+.+.. .+...+..+...+...|++++|.+.|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999886 33 566889999999999999999999987643 25667788889999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCC
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRT 280 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~ 280 (509)
+++.+.. +.+..+|..+...+...|++++|...|+++++.+ |.+...+..+..++...|++++|...|++.. ..+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 9998863 3457888899999999999999999999999886 6678889999999999999999999998775 335
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..++..+..++...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...++++.+. .+.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHH
Confidence 7788999999999999999999999999863 235678888999999999999999999999853 3557888999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
.+.+.|++++|.+.++++ ...| +..++..++..+.+.|++++|.+.++++++..|..+.+|..++..+...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999887 4555 467889999999999999999999999999999988899999988877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-27 Score=223.89 Aligned_cols=345 Identities=13% Similarity=0.077 Sum_probs=307.0
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
|+++.|...+..+.+.. |++...+..+...+...|++++|...++.... .+..+|..+..+|.+.|++++|.+.|
T Consensus 13 g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 89999999999988874 77789999999999999999999999988763 36789999999999999999999999
Q ss_pred hcCC---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 173 DEMP---VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 173 ~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
+++. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. |.+
T Consensus 91 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 9774 3367789999999999999999999999999863 3345567778888999999999999999999886 667
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+..++..+..++
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHH
Confidence 88999999999999999999999999863 356789999999999999999999999998863 23578888999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
.+.|++++|...++++.+ ..+.+..+|..+...+.+.|++++|.+.++++ . .+.+..++..+...+...|++++|.
T Consensus 248 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999995 22345778999999999999999999999987 3 3447889999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.++++++..|.+...+..++.+|.+.|++++|.+.|+++.+.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999899999999999999999999999999874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=239.63 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=171.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC---------HHHHHHHHHHHHHcCCCCcH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT---------LGIGLWIHRYVLKQDFKDNV 250 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 250 (509)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346788999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 251 KVCNTLIDLYSRCGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
.+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 4799999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
++.|+.++|.+++++|. ..+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999 679999999999999988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=229.46 Aligned_cols=200 Identities=11% Similarity=0.101 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---------H
Q 010496 197 EEALECFREMQISGVEPDY-VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC---------I 266 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 266 (509)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4556677778777766554 45888999999999999999999999999999999999999999997664 7
Q ss_pred HHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 267 EFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 267 ~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 010496 343 KKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 397 (509)
. ..|+.||..+|+.||.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 V-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp H-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred H-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9 6899999999999999999999999999999999 6899999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=216.32 Aligned_cols=393 Identities=9% Similarity=-0.025 Sum_probs=317.5
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
+..|......+.+.|++++|+..|+++.+. .|+...|..+..++... |+++.|...+..+.+.+ |++..++..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~--p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSV--GDLKKVVEMSTKALELK--PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccC--hHHHHHHHHH
Confidence 456778889999999999999999999985 47888999999999888 99999999999999985 7779999999
Q ss_pred HHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHH-----------------------------
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMF----------------------------- 172 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~----------------------------- 172 (509)
+.+|.+.|++++|...|+++... +......++..+.+......+.+.+
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999988532 3333333333333222222221111
Q ss_pred ---------hcCC---------CC-CHhHHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCC--------CCHhH
Q 010496 173 ---------DEMP---------VR-DAISWTALLNGFVK---RGYFEEALECFREMQI-----SGVE--------PDYVT 217 (509)
Q Consensus 173 ---------~~~~---------~~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~--------p~~~~ 217 (509)
.... .+ +...+......+.. .|++++|..+|+++.+ ..-. .+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 1111 01 24555555555554 8999999999999987 3112 23456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhC
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN 294 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 294 (509)
+..+...+...|++++|..+++++.+.+ +. ..++..+..+|...|++++|.+.++++.+ .+...+..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 7788889999999999999999999886 33 88899999999999999999999998764 3667899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNV 374 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 374 (509)
|++++|...++++..... .+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...
T Consensus 318 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998643 35678888889999999999999999999853 234567888999999999999999999
Q ss_pred HHhC-C---CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 375 VENM-P---MKPN----EVVLGSLLAACRT---KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 375 ~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
++++ . ..++ ...+..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|.+.|++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9887 2 2222 4488889999999 99999999999999999999988999999999999999999999999
Q ss_pred HHhCC
Q 010496 444 MKGRG 448 (509)
Q Consensus 444 m~~~~ 448 (509)
..+..
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-23 Score=202.97 Aligned_cols=326 Identities=13% Similarity=0.064 Sum_probs=269.7
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALL 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 187 (509)
.|++...+..++..+.+.|++++|+.+|+++.. .+...|..+..++...|++++|...|+.+.. .+..++..+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 366788889999999999999999999998763 3678888899999999999999999987643 3678889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-H---hHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPD-Y---VTIISV------------LNACANVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
.+|.+.|++++|.+.|+++.+. .|+ . ..+..+ ...+...|++++|..+++++.+.. +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999999875 444 3 444444 445889999999999999999876 67888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH-----
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGA----- 322 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l----- 322 (509)
++..++.+|.+.|++++|.+.|+++. ..+..+|..++.+|...|++++|+..|+++... .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 99999999999999999999999886 357789999999999999999999999999875 343 3444443
Q ss_pred -------HHHHhccCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010496 323 -------LTACSHAGLIEDGLRYFDIMKKIYRVSPR--IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLL 391 (509)
Q Consensus 323 -------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 391 (509)
...+.+.|++++|...|+++.+.....+. ...+..+..++.+.|++++|+..++++ ...| +...|..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 77889999999999999999853222111 457888999999999999999999987 4445 678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH------------HHHcC-----CchHHHHHHHHH
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM------------YAAVG-----KWDGAGKIRRTM 444 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 444 (509)
.+|...|++++|...++++++..|.++..+..++.+ |...| +.+++.+.++++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999998888888844 44444 556777777764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-23 Score=201.53 Aligned_cols=365 Identities=12% Similarity=0.036 Sum_probs=243.2
Q ss_pred CCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 42 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
+.++..|..+...+.+.|++++|+.+|+++.+.. +.+...|..+...+... |+.+.|...+..+.+.+ |++..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~--p~~~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM--GKSKAALPDLTKVIQLK--MDFTAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC--CCcHHHH
Confidence 3467889999999999999999999999998752 34677788888888888 99999999999999885 6678999
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCCC---h---HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCC
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVKS---S---FTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 195 (509)
..++.+|.+.|++++|.+.|+++...+ . ..+..++..+.. ..+..+...+...|+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCC
Confidence 999999999999999999999886532 2 455555444211 112233444555666
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+++|+.+|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++.+|...|++++|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665542 3345555556666666666666666666665543 44555666666666666666666666665
Q ss_pred ccC--C-ChhhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHH
Q 010496 276 MHK--R-TLVSWNSI------------IVGFAVNGFVGEALEYFNSMQKEGFKPD-----GVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 276 ~~~--~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a 335 (509)
+.+ | +...+..+ +..+...|++++|...|+++... .|+ ...+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 542 1 22333333 66777777888888888777764 333 33566677777778888888
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC---
Q 010496 336 LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAA------------CRTKG--- 398 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g--- 398 (509)
...++++.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+..+..+ |...|
T Consensus 315 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 8888877742 2335677777777888888888888887776 55554 4455444422 22333
Q ss_pred --CHHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHHcCCchH
Q 010496 399 --DIILAERLMKY-LVDLDPGVDS----------NYVLLANMYAAVGKWDG 436 (509)
Q Consensus 399 --~~~~a~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~ 436 (509)
+.+++.+.+++ .++..|+... .+..+..+|...++.++
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56677888886 6667776221 35566666666665554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-23 Score=207.23 Aligned_cols=392 Identities=10% Similarity=-0.007 Sum_probs=305.2
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHH
Q 010496 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTA 123 (509)
Q Consensus 44 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 123 (509)
....|..+...+.+.|++++|+..|+++.+.. +.+...|..+..++... |+++.|...+..+.+.+ |++..++..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~--p~~~~~~~~ 98 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST--GDLEKVIEFTTKALEIK--PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC--CchHHHHHH
Confidence 45678889999999999999999999999853 33667788888888888 99999999999999985 777999999
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--------------------------
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPV-------------------------- 177 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------- 177 (509)
+..++...|++++|+..|+.+. .++......+..+...+....|...++.+..
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999997553 2222222223333344444555555544422
Q ss_pred -----------CCHh---HHHHHHHHHH--------HcCChHHHHHHHHHHHHcCCCCC-H-------hHHHHHHHHHHc
Q 010496 178 -----------RDAI---SWTALLNGFV--------KRGYFEEALECFREMQISGVEPD-Y-------VTIISVLNACAN 227 (509)
Q Consensus 178 -----------~~~~---~~~~li~~~~--------~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~ 227 (509)
.+.. ....+...+. ..|++++|..+++++.+. .|+ . .++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 2111 2223332222 225789999999999875 343 2 246667778889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYF 304 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 304 (509)
.|++++|...++++.+.. |+..++..+..++...|++++|.+.|+++. ..+..+|..+...+...|++++|+..+
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999875 448889999999999999999999999876 346788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C----
Q 010496 305 NSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P---- 379 (509)
Q Consensus 305 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---- 379 (509)
+++.... +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ .
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9999863 234677888999999999999999999999853 2445778899999999999999999999886 1
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 380 ---MKPNEVVLGSLLAACRTK----------GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 380 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.......+..+...+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.|++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111233455556677777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 010496 447 RG 448 (509)
Q Consensus 447 ~~ 448 (509)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 64
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-23 Score=203.26 Aligned_cols=358 Identities=11% Similarity=-0.018 Sum_probs=276.9
Q ss_pred HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHH
Q 010496 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGY 159 (509)
Q Consensus 83 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 159 (509)
+......+... |+++.|...+..+.+.+ |+ ..++..+..+|.+.|++++|+..++++.. .+...|..+..+|
T Consensus 9 ~~~~g~~~~~~--g~~~~A~~~~~~al~~~--p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRN--KKYDDAIKYYNWALELK--ED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHT--SCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHhcC--cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 44444555566 89999999999999886 65 88999999999999999999999998763 3667888899999
Q ss_pred HhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHH-----------------------------
Q 010496 160 MRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQ----------------------------- 207 (509)
Q Consensus 160 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~----------------------------- 207 (509)
.+.|++++|...|+.+... +......++..+........+.+.+..+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999876422 33333333333333222222222221110
Q ss_pred ------HcCCC--------C-CHhHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCcHhHHHHH
Q 010496 208 ------ISGVE--------P-DYVTIISVLNACAN---VGTLGIGLWIHRYVLK-----QDF--------KDNVKVCNTL 256 (509)
Q Consensus 208 ------~~~~~--------p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 256 (509)
..... | +...+......+.. .|++++|..+++++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00000 1 13444444444444 8999999999999988 311 3346788899
Q ss_pred HHHHHhcCCHHHHHHHHHhcc--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 257 IDLYSRCGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
..++...|++++|...|+++. .|+...+..+..++...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999876 2347788889999999999999999999998863 3366788889999999999999
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
|...++++.+ ..+.+...+..+...|...|++++|...++++ ...| +...+..+...+...|++++|...++++.+
T Consensus 323 A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999985 23346778899999999999999999999887 3334 567889999999999999999999999999
Q ss_pred cCCCCCc------hHHHHHHHHHH---cCCchHHHHHHHHHHhCC
Q 010496 413 LDPGVDS------NYVLLANMYAA---VGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 413 ~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~ 448 (509)
..|.++. .+..++.+|.. .|++++|.+.++++.+..
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 8888755 89999999999 999999999999998753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-20 Score=175.92 Aligned_cols=302 Identities=14% Similarity=0.059 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFV 191 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 191 (509)
+..+..+...+...|++++|+..|+++.. .+...+..+...+...|++++|...|+.+.. .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45566666666666666666666666542 2344555555555555555555555554421 24445555555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 192 KRGYFEEALECFREMQISGVEP----DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
..|++++|...|+++.+. .| +...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 555555555555555543 23 1222222210000 000111245555666666
Q ss_pred HHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 268 FARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 268 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666554 2244555566666666666666666666666542 23455566666666666666666666666663
Q ss_pred hcCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 010496 345 IYRVSPRIEHYG------------CIVDLYSRAGRLEDALNVVENM-PMKPN-E----VVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 345 ~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 22 11222222 2355677778888888777765 33333 2 2344566777888888888888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 407 MKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++++++..|.++..+..++.+|.+.|++++|.+.|++..+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888877778888888888888888888888887764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-20 Score=175.20 Aligned_cols=323 Identities=10% Similarity=-0.024 Sum_probs=214.1
Q ss_pred cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHH
Q 010496 80 HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMI 156 (509)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 156 (509)
...+..+...+... |+++.|...+..+.+.. |+++.++..+..++...|++++|...|+++.. | +...+..+.
T Consensus 3 ~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAA--GQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34566667777777 99999999999999975 77799999999999999999999999998863 3 678899999
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCC------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 157 DGYMRRGDIESAVRMFDEMPVRD------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 157 ~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
..+...|++++|...|+.....+ ...+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 99999999999999999875433 333433311100 0012222333444444
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
+++|..+++++.+.. +.+..++..+..++...|++++|...++++.+ .+..++..+...+...|++++|...+++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444443 33444444444455555555555555444432 23344445555555555555555555555
Q ss_pred HHCCCCCCHHH------------HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHH
Q 010496 308 QKEGFKPDGVS------------FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI--EHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 308 ~~~g~~p~~~~------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~ 373 (509)
.+... .+... ...+...+.+.|++++|...++++.+.....+.. ..+..+...+...|++++|.+
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 54311 11121 1223556778888888888888888533221111 235567788888999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 374 VVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 374 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.+++. ...| +..++..+...+...|++++|.+.++++++..|+++..+..+..++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88876 3345 6778888999999999999999999999999999888877777765543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-19 Score=177.65 Aligned_cols=368 Identities=13% Similarity=0.043 Sum_probs=281.0
Q ss_pred CCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 42 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
+.++.+|..+...|.+.|++++|+..|+++.+.+ +.+...+..+...+... |+.+.|...+. .... .|+..
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~--g~~~~A~~~~~-~~~~--~~~~~--- 126 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL--GNFTDAMFDLS-VLSL--NGDFD--- 126 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--TCHHHHHHHHH-HHC-----------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc--CCHHHHHHHHH-HHhc--CCCCC---
Confidence 3467899999999999999999999999999853 23566777777777777 99999999985 3333 23311
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCC----------ChH------------------------------HHHHHHHHHHh
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVK----------SSF------------------------------TWNAMIDGYMR 161 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~------------------------------~~~~l~~~~~~ 161 (509)
...+..+...+....|...++.+... +.. ....+...+..
T Consensus 127 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (537)
T 3fp2_A 127 GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSA 206 (537)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence 22233445555566677777666431 111 12222222222
Q ss_pred --------CCCHHHHHHHHhcCCCC---C-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 010496 162 --------RGDIESAVRMFDEMPVR---D-------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLN 223 (509)
Q Consensus 162 --------~~~~~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 223 (509)
.|++++|..+|+.+... + ..++..+...+...|++++|...|+++.+. .|+...+..+..
T Consensus 207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 284 (537)
T 3fp2_A 207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLAL 284 (537)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHH
Confidence 24789999999877543 2 235777778899999999999999999985 566888889999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 300 (509)
.+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999886 67788999999999999999999999998863 4677899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhc----------C
Q 010496 301 LEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP----RIEHYGCIVDLYSRA----------G 366 (509)
Q Consensus 301 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~----------g 366 (509)
...++++.+.. +.+...+..+...+...|++++|...++++.+.....+ ....+..+...+.+. |
T Consensus 364 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99999999863 33567888889999999999999999999875332111 223345556677777 9
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 367 RLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 367 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
++++|...++++ ...| +...+..+...+...|++++|.+.++++++..|.++....
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999987 3444 5778999999999999999999999999999998765533
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-20 Score=173.15 Aligned_cols=301 Identities=11% Similarity=0.026 Sum_probs=217.3
Q ss_pred CCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH-HHhcCCCC-------CHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 132 GRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVR-MFDEMPVR-------DAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 132 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+.++.+...++.+...++. .+...|++++|.+ .|+..... +...+..+...+.+.|++++|...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344444455544433322 2334577777777 77644321 2455777888888888888888888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---C
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---T 280 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 280 (509)
+++.+.. +.+...+..+..++...|++++|...++++++.. +.+..++..++.+|...|++++|.+.|+++.+. +
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 8888763 4467778888888888888888888888888876 667788888888888888888888888877532 2
Q ss_pred hhhHHH---------------HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 281 LVSWNS---------------IIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 281 ~~~~~~---------------l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
...+.. .+..+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222211 1333348899999999999999863221 478888999999999999999999999985
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----
Q 010496 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV----- 417 (509)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 417 (509)
. .+.+...+..+...|...|++++|...++++ ...| +...+..+..++...|++++|...++++++..|.+
T Consensus 246 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 246 V--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred h--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 3 2346788999999999999999999999987 4444 57799999999999999999999999999988876
Q ss_pred ------CchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 418 ------DSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 418 ------~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
..+|..++.+|...|++++|..++++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 67899999999999999999998864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-19 Score=165.83 Aligned_cols=278 Identities=9% Similarity=0.001 Sum_probs=173.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMP---VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG- 229 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 229 (509)
.+...+...|++++|.++|+.+. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 33333444444444444444332 1233444455555666666666666666666542 234555566666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 230 TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++++|...+++
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666666666666554 44555666666666666666666666666542 2345566666667777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 010496 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR-------VSPRIEHYGCIVDLYSRAGRLEDALNVVENM- 378 (509)
Q Consensus 307 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 378 (509)
+.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|...|++++|...+++.
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76652 33456666677777777777777777777664221 1233556777777777888888888777775
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCc
Q 010496 379 PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY-AAVGKW 434 (509)
Q Consensus 379 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 434 (509)
...| +...+..+...+...|++++|.+.++++++..|.++..+..++.++ ...|+.
T Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 2233 4567777788888888888888888888888888777778887777 344543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-19 Score=163.26 Aligned_cols=265 Identities=12% Similarity=0.015 Sum_probs=232.1
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 178 RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 178 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366778888999999999999999999998864 4456677778889999999999999999999986 67788999999
Q ss_pred HHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010496 258 DLYSRCG-CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE 333 (509)
Q Consensus 258 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 333 (509)
..+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999764 3567899999999999999999999999998632 34566777888999999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 010496 334 DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM----------KPNEVVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 402 (509)
+|...++++.+ ..+.+...+..+...+...|++++|...++++ .. .....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999984 33446788999999999999999999999876 11 3346789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 403 AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|...++++++..|.+...+..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-17 Score=164.31 Aligned_cols=367 Identities=10% Similarity=-0.019 Sum_probs=292.0
Q ss_pred CCCccchHHHHHHHHc----CCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcC----CCccchhHHHHHHHHHHHhCC
Q 010496 42 VNPTVQWTSSISRHCR----SGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD----FPSQCLFLGAMIHGLVCKLGL 113 (509)
Q Consensus 42 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~ 113 (509)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. . ++.+.|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~~- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVP--QDYAQAVIWYKKAALKG- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC-
Confidence 3467788888888888 899999999999998864 44555555555544 4 88999999999988765
Q ss_pred CCCchHHHHHHHHHHHh----cCCchHHHHHHHhcCCC-ChHHHHHHHHHHHh----CCCHHHHHHHHhcCCCC-CHhHH
Q 010496 114 DRNNVMVGTALLDMYAK----FGRMDLATVVFDAMRVK-SSFTWNAMIDGYMR----RGDIESAVRMFDEMPVR-DAISW 183 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~ 183 (509)
++..+..|...|.. .+++++|+..|++.... ++..+..+...|.. .+++++|.+.|+..... +..++
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 37788889998888 78999999999987654 67778888888887 78999999999876543 78888
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 010496 184 TALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVLNACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCNT 255 (509)
Q Consensus 184 ~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (509)
..+...|.. .+++++|.++|++..+.| +...+..+...+.. .+++++|..+|++..+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 889998888 899999999999988865 55677777777765 789999999999988865 4567777
Q ss_pred HHHHHHh----cCCHHHHHHHHHhccCC-ChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010496 256 LIDLYSR----CGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVN-----GFVGEALEYFNSMQKEGFKPDGVSFTGALTA 325 (509)
Q Consensus 256 l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 325 (509)
+..+|.. .+++++|.+.|++..+. +...+..+...|... +++++|+..|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 8888887 88999999999988754 667788888888877 89999999999998864 34566667766
Q ss_pred HhccC---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 010496 326 CSHAG---LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENMPMKPNEVVLGSLLAACRT-- 396 (509)
Q Consensus 326 ~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 396 (509)
+...| +.++|...|++..+ . .+...+..|...|.. .+++++|.+++++.-...+...+..|...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 76655 78899999999884 2 456778888888888 78999999999887333467788888888887
Q ss_pred --cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHH
Q 010496 397 --KGDIILAERLMKYLVDLDPG---VDSNYVLLANMYAA 430 (509)
Q Consensus 397 --~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 430 (509)
.+++++|...|+++.+.+|. ++.....++.++..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88999999999999998854 55556666655443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-17 Score=159.81 Aligned_cols=362 Identities=12% Similarity=0.029 Sum_probs=299.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHhhcC----CCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----cCCchH
Q 010496 65 ALEFTRMTLHGTNPNHITFITLLSGCAD----FPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK----FGRMDL 136 (509)
Q Consensus 65 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 136 (509)
+..+....+.| +...+..+-..+.. . ++.+.|...+....+.| ++..+..|...|.. .++.++
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~--~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETT--KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC--cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 45555555433 44444444444433 4 88999999999998874 47889999999999 899999
Q ss_pred HHHHHHhcCCC-ChHHHHHHHHHHHh----CCCHHHHHHHHhcCCCC-CHhHHHHHHHHHHH----cCChHHHHHHHHHH
Q 010496 137 ATVVFDAMRVK-SSFTWNAMIDGYMR----RGDIESAVRMFDEMPVR-DAISWTALLNGFVK----RGYFEEALECFREM 206 (509)
Q Consensus 137 A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m 206 (509)
|...|++.... ++..+..+...|.. .+++++|...|+..... ++.++..+...|.. .+++++|+++|++.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999988754 77788888888888 88999999999977554 78888999999988 88999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccC
Q 010496 207 QISGVEPDYVTIISVLNACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFARQVFQRMHK 278 (509)
Q Consensus 207 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 278 (509)
.+.| +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9865 67788888888877 899999999999999876 56778888888887 8899999999999875
Q ss_pred C-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCC
Q 010496 279 R-TLVSWNSIIVGFAV----NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA-----GLIEDGLRYFDIMKKIYRV 348 (509)
Q Consensus 279 ~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~ 348 (509)
. +...+..+...|.. .++.++|+..|++..+.| +...+..+...+... +++++|...+++..+ .
T Consensus 252 ~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~-- 325 (490)
T 2xm6_A 252 QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q-- 325 (490)
T ss_dssp TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T--
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c--
Confidence 4 66778888888888 899999999999998764 455666677777776 899999999999984 2
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchH
Q 010496 349 SPRIEHYGCIVDLYSRAG---RLEDALNVVENMPMKPNEVVLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
.+...+..+...|...| ++++|++++++.-...+...+..|...|.. .+++++|.+.|+++.+.+ ++..+
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence 34567788888888766 789999999887333578899999999988 899999999999999865 56789
Q ss_pred HHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 010496 422 VLLANMYAA----VGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 422 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 450 (509)
..|+.+|.+ .+++++|...|++..+.+..
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999998 89999999999999988743
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-19 Score=166.39 Aligned_cols=261 Identities=11% Similarity=-0.016 Sum_probs=214.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+...+..+...+.+.|++++|+++|+++.+.. +.+...+..+..++...|++++|...|+++++.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998864 4467888899999999999999999999999886 667888999999
Q ss_pred HHHhcCCHHHHHHHHHhccCCC-------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMHKRT-------------LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK-PDGVSFTGALT 324 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~li~ 324 (509)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999886422 123344578899999999999999999986322 15788999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 402 (509)
.+...|++++|+..++++.+. .+.+..+|..+..+|...|++++|...++++ ...| +..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999853 2446889999999999999999999999987 4455 47799999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 403 AERLMKYLVDLDPG------------VDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 403 a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|...++++++..|. +...|..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998766 256799999999999999998887754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-16 Score=156.44 Aligned_cols=392 Identities=9% Similarity=0.022 Sum_probs=291.9
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
-++..|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+. ++.+.|..+++.+++.. |+ ...|
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~--p~-~~lw 82 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKV--LH-IDLW 82 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTC--CC-HHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcC--CC-hHHH
Confidence 36778999998 58899999999999999985 45 556788888888888 99999999999998875 65 7788
Q ss_pred HHHHHHH-HhcCCchHHHH----HHHhcC------CCChHHHHHHHHHHHh---------CCCHHHHHHHHhcCCC-CC-
Q 010496 122 TALLDMY-AKFGRMDLATV----VFDAMR------VKSSFTWNAMIDGYMR---------RGDIESAVRMFDEMPV-RD- 179 (509)
Q Consensus 122 ~~l~~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~- 179 (509)
...+... ...|+.+.|.+ +|++.. ..+...|...+....+ .|+++.|..+|++... |.
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 8777533 45688887765 666552 1356778887776655 6889999999987654 21
Q ss_pred --HhHHHHHHHHH-------------HHcCChHHHHHHHHHHH------HcC---CCCCH--------hHHHHHHHHHHc
Q 010496 180 --AISWTALLNGF-------------VKRGYFEEALECFREMQ------ISG---VEPDY--------VTIISVLNACAN 227 (509)
Q Consensus 180 --~~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~~---~~p~~--------~~~~~l~~~~~~ 227 (509)
...|....... .+.+++..|..++..+. +.. ++|+. ..|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 12333222211 12345677777776632 111 24431 344444433222
Q ss_pred ----cCCH----HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccC---C-Ch
Q 010496 228 ----VGTL----GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR-------CGCIE-------FARQVFQRMHK---R-TL 281 (509)
Q Consensus 228 ----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~ 281 (509)
.++. +.+..+|++++... |.+..+|..++..+.+ .|+++ +|..+|++..+ | +.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1232 47788999998875 6788899999988886 68877 89999998874 3 56
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-G-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
..|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+. .+.+...|...+
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a 397 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence 78999999999999999999999999985 454 2 47888888888999999999999999942 122333343332
Q ss_pred HH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHHcC
Q 010496 360 DL-YSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS----NYVLLANMYAAVG 432 (509)
Q Consensus 360 ~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 432 (509)
.. +...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++. .|...+......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 34689999999999986 4445 5789999999999999999999999999998776655 6888888888999
Q ss_pred CchHHHHHHHHHHhC
Q 010496 433 KWDGAGKIRRTMKGR 447 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~ 447 (509)
+.+.+..+++++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-18 Score=158.29 Aligned_cols=260 Identities=10% Similarity=-0.024 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..+|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 445666777777777788877777777653 3356667777777777788888888887777765 55677777777778
Q ss_pred HhcCCHHHHHHHHHhccCC---ChhhHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010496 261 SRCGCIEFARQVFQRMHKR---TLVSWNSI--------------IV-GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA 322 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 322 (509)
...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 8888888888777776532 22233222 22 3677889999999999998863 3367888889
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 400 (509)
...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999853 2346788999999999999999999999886 3344 577899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPG------------VDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
++|.+.++++++..|. ++..+..++.+|.+.|++++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999888 56789999999999999999999987543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-17 Score=146.88 Aligned_cols=270 Identities=12% Similarity=0.056 Sum_probs=208.5
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 010496 157 DGYMRRGDIESAVRMFDEMPVRDA----ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLG 232 (509)
Q Consensus 157 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 232 (509)
.-....|++..|++.++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 334557888888888877655432 3445677888889998888876644 2 3566777888888888889999
Q ss_pred HHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010496 233 IGLWIHRYVLKQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 233 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 311 (509)
+|.+.++++...+. |.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999998887763 55677788888999999999999999998 567788999999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 010496 312 FKPDGVSF---TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVV 386 (509)
Q Consensus 312 ~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 386 (509)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3553211 12334445568999999999999963 4567888999999999999999999999986 4555 6778
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010496 387 LGSLLAACRTKGDIIL-AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
+..++..+...|+.++ +.++++++++..|+++.+. ....+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 9999999999999875 6789999999999986543 344455555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=167.07 Aligned_cols=281 Identities=11% Similarity=0.117 Sum_probs=100.7
Q ss_pred hcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 010496 130 KFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 209 (509)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456667777777766443 3666777777777777777777754 345556666777777777777777766555553
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHH
Q 010496 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIV 289 (509)
Q Consensus 210 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 289 (509)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3445566666677777777766666663 355556777777777777777777777766 36667777
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 290 GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHH
Confidence 777777777777777766 1566677777777777777777433322 1123333445666677777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHHcCCchHHHHH
Q 010496 370 DALNVVENM-PMKP-NEVVLGSLLAACRTK--GDIILAERLMKYLVDLDP-----GVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 370 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
+|..+++.. +..+ ....|+.|...|++. ++..+.++.|..-+...| .+...|..+...|.+.++++.|...
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 777766654 4433 344555555555443 234444444443333333 3455677777777777777766653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-18 Score=159.09 Aligned_cols=277 Identities=13% Similarity=0.054 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHH-HHHHHHHcCC-CC--CHhHHHHHHHHHHccCCHHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALE-CFREMQISGV-EP--DYVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
.+.++.+...|+.+...++. ++...|++++|++ .+++...... .| +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555555444332 3445688999998 8887654321 11 345678889999999999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP 314 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 314 (509)
++++++.. +.+..++..+..+|...|++++|.+.|+++. ..+..++..+...+...|++++|...++++......
T Consensus 87 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 164 (368)
T 1fch_A 87 FEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA- 164 (368)
T ss_dssp HHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 99999986 7788899999999999999999999999876 346788999999999999999999999999986422
Q ss_pred CHHHHHH---------------HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 010496 315 DGVSFTG---------------ALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM- 378 (509)
Q Consensus 315 ~~~~~~~---------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 378 (509)
+...+.. .+..+...|++++|...++++.+.....++..++..+...|.+.|++++|...++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1222211 233344889999999999999964333235888999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 379 PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 379 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...| +...+..++..+...|++++|...++++++..|.++.++..++.+|.+.|++++|...|+++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444 57799999999999999999999999999999999999999999999999999999999999874
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-16 Score=157.38 Aligned_cols=326 Identities=10% Similarity=-0.012 Sum_probs=184.4
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHhcCC-----------CChHHHHHHHHHHHh--CCCHHHHHHHHhcCC---CC
Q 010496 115 RNNVMVGTALLDMYAKFGRMDLATVVFDAMRV-----------KSSFTWNAMIDGYMR--RGDIESAVRMFDEMP---VR 178 (509)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~---~~ 178 (509)
|....+|..+..+|...|++++|...+++... ....++..+..++.+ .+++++|.+.|++.. +.
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 33345566666666666666666666655421 123444444444433 235666666666543 22
Q ss_pred CHhHHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 179 DAISWTALLNG---FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACA----NVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 179 ~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
++..+..+..+ +...++.++|++.+++..+.. +.+...+..+...+. ..+++++|.+++++..... +.+..
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~ 248 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTD 248 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHH
Confidence 44444444433 234455666666666666542 223444444433333 2345566667776666654 55566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHh-------------------CCChHHHHHHHHHHHH
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV-------------------NGFVGEALEYFNSMQK 309 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~m~~ 309 (509)
++..+...|...|++++|...|+++.+ .+..++..+..+|.. .+.++.|...+++..+
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 666677777777777777777766542 233445444444322 2235678888888777
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI--EHYGCIVD-LYSRAGRLEDALNVVENM-PMKPNEV 385 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~ 385 (509)
.. +.+..++..+...+...|++++|+..|+++.+ ....+.. ..+..+.. .+...|++++|+..+++. .+.|+..
T Consensus 329 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 329 AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 53 23455677788889999999999999999884 2222221 12333332 234678999999999876 5666644
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKP 453 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 453 (509)
.... ....+.+++++.++.+|.++.+|..++.+|...|++++|++.|++..+.+-..+.
T Consensus 407 ~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 407 EKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 3322 2345667788888999999999999999999999999999999999887644333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=154.11 Aligned_cols=286 Identities=8% Similarity=0.029 Sum_probs=118.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchH
Q 010496 57 RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDL 136 (509)
Q Consensus 57 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (509)
+.|++++|.+.++++. +..+|..+..++... ++++.|.+.|... ++ +..|..++..+...|++++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~--g~~~eAIdsfika------~D-~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK--GMVKEAIDSYIKA------DD-PSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHc--CCHHHHHHHHHcC------CC-HHHHHHHHHHHHhCCCHHH
Confidence 4567788888887772 224777777777777 7788777777431 33 6677778888888888888
Q ss_pred HHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 010496 137 ATVVFDAMRV--KSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214 (509)
Q Consensus 137 A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 214 (509)
|++.++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 80 Ai~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 80 LVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 8887766653 2456677778888888888887777753 56668888888888888888888888766
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhC
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 294 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (509)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......+. ..+.-...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHC
Confidence 36777888888888888888888777 257778888888888888888866666544 3444455677778888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHhcCCh
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP------RIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 368 (509)
|++++|..+++..+... +-....|+-+.-++++- ++++..+.++...+.-+++| +...|..++-.|...+++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 88888888888777543 33455566555555543 33333333333332223333 345577777778888888
Q ss_pred HHHHHHHHhC
Q 010496 369 EDALNVVENM 378 (509)
Q Consensus 369 ~~A~~~~~~~ 378 (509)
+.|....-+-
T Consensus 299 d~A~~tm~~h 308 (449)
T 1b89_A 299 DNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 8777655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-15 Score=156.48 Aligned_cols=355 Identities=10% Similarity=0.070 Sum_probs=270.5
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCC--CCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGT--NPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
...|+.+ ...+++|+..|.+.+|+++|++..-.+- .-+...-+.++....+. +.............
T Consensus 982 ~~~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~------- 1049 (1630)
T 1xi4_A 982 TQDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDN------- 1049 (1630)
T ss_pred ccCHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhh-------
Confidence 3444444 5678999999999999999999984321 01223344455444443 33333333333321
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 197 (509)
.....+...+...|.+++|..+|++.... ....+.++ -..+++++|.++.++.. ++.+|..+..++.+.|+++
T Consensus 1050 -~d~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1050 -YDAPDIANIAISNELFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred -ccHHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 11344788899999999999999998522 22222232 27789999999999774 5788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
+|++.|.+. -|...|..++.++.+.|++++|.++|...++.. ++..+.+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999999663 467788899999999999999999999888765 34344446999999999998655443 4
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 010496 278 KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC 357 (509)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 357 (509)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHH
Confidence 556677888999999999999999999984 478899999999999999999998774 3578888
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc--CCch
Q 010496 358 IVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV--GKWD 435 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 435 (509)
+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.+++.+...|.-++.+|.+. ++.-
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999887753 345666778899999999999999999999999988888898888888875 3444
Q ss_pred HHHHHHH
Q 010496 436 GAGKIRR 442 (509)
Q Consensus 436 ~A~~~~~ 442 (509)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 4555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-17 Score=148.07 Aligned_cols=247 Identities=12% Similarity=0.086 Sum_probs=204.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDY--VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
++.....|++..|+..++..... .|+. .....+.++|...|+++.|...++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45667889999999998876543 4543 3556778999999999999986654 2 3678889999999999999
Q ss_pred CHHHHHHHHHhccC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010496 265 CIEFARQVFQRMHK----R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 265 ~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
+.++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 3 566777888999999999999999987 457788888999999999999999999
Q ss_pred HHhHHhcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 340 DIMKKIYRVSPRIE---HYGCIVDLYSRAGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 340 ~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
+++.+. .|+.. ....++..+...|++++|..+|+++ ....+...++.+..++...|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999953 24422 1123344555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchH-HHHHHHHHHhCC
Q 010496 415 PGVDSNYVLLANMYAAVGKWDG-AGKIRRTMKGRG 448 (509)
Q Consensus 415 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 448 (509)
|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578999887753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-17 Score=154.65 Aligned_cols=231 Identities=13% Similarity=0.053 Sum_probs=197.0
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVG 290 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 290 (509)
+...+..+...+.+.|++++|..+|+++++.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999986 77899999999999999999999999998863 467899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDG-----------VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|...++++.+......+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999885 3332 2233457788999999999999999996443323688999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 437 (509)
..|...|++++|.+.++++ ...| +..+|..+..++...|++++|...++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3444 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 010496 438 GKIRRTMKGR 447 (509)
Q Consensus 438 ~~~~~~m~~~ 447 (509)
...|+++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-15 Score=149.18 Aligned_cols=371 Identities=8% Similarity=-0.011 Sum_probs=268.8
Q ss_pred HHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC
Q 010496 68 FTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV 146 (509)
Q Consensus 68 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (509)
|++.++. .| +...|..++.. ... ++.+.|..+++.+.+. .|.+...|..++..+.+.|++++|..+|+++..
T Consensus 2 le~al~~--~P~~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIRE-AQN--QPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhh--CCCCHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3444443 34 56678888874 555 8999999999999887 488899999999999999999999999999875
Q ss_pred --CChHHHHHHHHHH-HhCCCHHHHHH----HHhcCC------CCCHhHHHHHHHHHHH---------cCChHHHHHHHH
Q 010496 147 --KSSFTWNAMIDGY-MRRGDIESAVR----MFDEMP------VRDAISWTALLNGFVK---------RGYFEEALECFR 204 (509)
Q Consensus 147 --~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~A~~~~~ 204 (509)
|+...|..++... ...|+++.|.+ +|+... ..+...|...+..... .|+++.|..+|+
T Consensus 75 ~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 75 KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 5666777666533 35677766654 565431 2356778777776655 688999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHH-------------HccCCHHHHHHHHHHHH------HcC---CCCc--------HhHHH
Q 010496 205 EMQISGVEPDYVTIISVLNAC-------------ANVGTLGIGLWIHRYVL------KQD---FKDN--------VKVCN 254 (509)
Q Consensus 205 ~m~~~~~~p~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~ 254 (509)
+..+....+....|....... ...+++..|..++.... +.. ++|+ ...|.
T Consensus 155 ~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 155 RGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 998731111123333222211 13456777777776532 211 2443 24555
Q ss_pred HHHHHHHhc----CCH----HHHHHHHHhccC---CChhhHHHHHHHHHh-------CCChH-------HHHHHHHHHHH
Q 010496 255 TLIDLYSRC----GCI----EFARQVFQRMHK---RTLVSWNSIIVGFAV-------NGFVG-------EALEYFNSMQK 309 (509)
Q Consensus 255 ~l~~~~~~~----g~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~m~~ 309 (509)
..+...... ++. .++..+|+++.. .+...|..++..+.+ .|+++ +|..+|++.++
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 555433322 222 467778887763 467788888888875 78887 89999999986
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-I-EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EV 385 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 385 (509)
.-.+-+...+..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|.++|++. ...|. ..
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 32233577888888889999999999999999994 3453 3 57889999999999999999999987 44443 33
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 386 VLGSLLAA-CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 386 ~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|...+.. +...|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 33333322 3468999999999999999999999999999999999999999999999998874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-17 Score=150.13 Aligned_cols=268 Identities=12% Similarity=0.013 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHH
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMP---VRDAISWTALLNGFVK 192 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 192 (509)
..+..+...+...|++++|..+|+++.. .+...+..+...+.+.|++++|...|+.+. +.+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3445566666667777777776666542 244455555555555555555555555442 2244455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH-HH-HHHhcCCHHHHH
Q 010496 193 RGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL-ID-LYSRCGCIEFAR 270 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a~ 270 (509)
.|++++|.+.++++.... +.+...+..+...+ ++......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 555555555555555432 11112222110000 000000000 11 244444555555
Q ss_pred HHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 010496 271 QVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347 (509)
Q Consensus 271 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 347 (509)
+.++++. ..+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 235 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-- 235 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 5555443 1234455555555555555555555555555442 223455555555666666666666666665532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-------------EVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.+.+...+..+...|.+.|++++|.+.++++ ...|+ ...+..+..++...|++++|..+++++++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1224555556666666666666666666554 22222 44666666667777777777666665444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-15 Score=149.75 Aligned_cols=369 Identities=9% Similarity=-0.082 Sum_probs=244.6
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhC-----C--CCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhC
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLH-----G--TNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLG 112 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 112 (509)
....+..||.|...+...|++++|++.|++..+. + ..| ...+|..+...+... |+.+.|...++++.+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--GRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHh
Confidence 3344677999999999999999999999987541 1 123 345688888888888 99999999998887652
Q ss_pred ------CCCCchHHHHHHHHHHHhc--CCchHHHHHHHhcCC--C-ChHHHHHHHHH---HHhCCCHHHHHHHHhcCC--
Q 010496 113 ------LDRNNVMVGTALLDMYAKF--GRMDLATVVFDAMRV--K-SSFTWNAMIDG---YMRRGDIESAVRMFDEMP-- 176 (509)
Q Consensus 113 ------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~-- 176 (509)
..+..+.++..+..++... +++++|+..|++... | ++..+..+..+ +...++.++|++.|+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1233467777777666665 468999999998863 3 55556555544 445677788888877543
Q ss_pred -CCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 177 -VRDAISWTALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 177 -~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
+.+..++..+...+.. .|++++|.+++++..... +.+...+..+...+...|++++|...++++.+.. |.+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 3466777766655554 467889999999988864 4567788899999999999999999999999886 66778
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 252 VCNTLIDLYSRC-------------------GCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 252 ~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
++..+..+|... +.++.|...|++.. ..+..++..+...+...|++++|+..|++.++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 888887776543 23566777777654 34567899999999999999999999999998
Q ss_pred CCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 010496 310 EGFKPDGV--SFTGALT-ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NE 384 (509)
Q Consensus 310 ~g~~p~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~ 384 (509)
....+... .+..+.. .....|+.++|+..|++..+ +.|+.......+ ..+.++++.. ...| +.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCH
Confidence 64443322 2222222 23577999999999999884 344432222222 2233333332 2334 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
.+|..+..++...|++++|++.|+++++.+|.+|.+..-++
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 78999999999999999999999999999998877665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-14 Score=150.69 Aligned_cols=347 Identities=12% Similarity=0.065 Sum_probs=236.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK 130 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (509)
+...+...|.+++|..+|++... .....+.++..+ +++++|.++.... +++.+|..+..++..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i-----~nldrAiE~Aerv-------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHI-----GNLDRAYEFAERC-------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHH-----hhHHHHHHHHHhc-------CCHHHHHHHHHHHHh
Confidence 45666677778888888877521 122233344322 6667776666533 337778888888888
Q ss_pred cCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPV--RDAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
.|++++|+..|.+. .|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+ .+
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 88888888888664 5666777788888888888888888865432 2333344577788888777753333 22
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 010496 209 SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288 (509)
Q Consensus 209 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 288 (509)
.++...|..+...|...|++++|..+|..+ ..|..++.+|++.|++++|.+.+++. .+..+|..+.
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVC 1257 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHH
Confidence 345566667778888888888888888774 36788888888888888888888877 4567788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhc--
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRA-- 365 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~-- 365 (509)
.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++... ++.+ ....|+.|...|++-
T Consensus 1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCH
Confidence 8888888888777766542 3355666788888889999999999998877 3333 455666666666654
Q ss_pred CChHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------cCCCCCchHHHHHH
Q 010496 366 GRLEDALNVVEN-MPMKP------NEVVLGSLLAACRTKGDIILAERLMKYLVD------------LDPGVDSNYVLLAN 426 (509)
Q Consensus 366 g~~~~A~~~~~~-~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~ 426 (509)
++..++.++|.. +.+.| +...|..++..|.+.|+++.|...+-.-.. ..+.++..|...+.
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence 455555555543 33333 566888888999999999988843222211 13456777888888
Q ss_pred HHHHcC---------------CchHHHHHHH
Q 010496 427 MYAAVG---------------KWDGAGKIRR 442 (509)
Q Consensus 427 ~~~~~g---------------~~~~A~~~~~ 442 (509)
.|...+ +.+++.++|+
T Consensus 1410 Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1410 FYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 887776 6667766665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=136.38 Aligned_cols=222 Identities=15% Similarity=0.071 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCc----HhHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDF--KDN----VKVCN 254 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 254 (509)
..+..+...+...|++++|+.+|+++.+.. .+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666554 4555555666666666666666666665554320 001 34444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
.+..+|...|++++|...| +++... .|+. ..+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~-------------------------------~~a~~~--~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYY-------------------------------QKSLTE--HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHH-------------------------------HHHHHH--CCCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHH-------------------------------HHHHhc--Cchh-------HHHHHHhHHHH
Confidence 4444444555554444444 444442 2221 12333344555
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
|...++++.+ ..+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++++
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555542 11123344555555555555555555555554 2222 344555555556666666666666666666
Q ss_pred cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 413 LDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 413 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|.++..+..++.+|.+.|++++|.+.+++..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665555566666666666666666666655544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=134.49 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----HHHHHHHH
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF--KPD----GVSFTGAL 323 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~----~~~~~~li 323 (509)
.+..+...+...|++++|..+|+++.+ .+...|..+..++...|++++|+..++++.+... .++ ...+..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 344455555555555555555544321 3444555555566666666666666666555311 112 47788889
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDII 401 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 401 (509)
.++...|++++|...++++.+. .|+. ..+.+.|++++|...++++ ...| +...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999943 3443 4566778899999999887 3455 4558888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+|...++++++..|.++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-15 Score=129.67 Aligned_cols=195 Identities=14% Similarity=0.015 Sum_probs=139.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
|++...+..+...+.+.|++++|...|++..+ .+...+..+..++.+.|++++|+..|++.++.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45556666667777777777777777776543 245566667777777777777777777777652 22455666677
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 010496 324 TACSHA-----------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLL 391 (509)
Q Consensus 324 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 391 (509)
.++... |++++|+..+++..+. .+-+...+..+...|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999998842 2335778888899999999999999999886 2226788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
.++...|++++|...++++++..|.++..+..++.++.+.|++++|++.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-15 Score=133.49 Aligned_cols=241 Identities=11% Similarity=-0.063 Sum_probs=184.2
Q ss_pred HcCChHHHHHHHHHHHHcCCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 010496 192 KRGYFEEALECFREMQISGVE--P-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEF 268 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (509)
..|++++|++.|+++.+.... | +...+..+..++...|++++|...++++++.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346788888888888875311 1 35567778888888889999998888888876 6678888888889999999999
Q ss_pred HHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 010496 269 ARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345 (509)
Q Consensus 269 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 345 (509)
|.+.|+++.+ .+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998888763 36778888889999999999999999998885 444444444555567779999999999888753
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...++++++..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 3677778888889999998876 33332 468888999999999999999999999999887644
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999988776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-15 Score=131.99 Aligned_cols=246 Identities=12% Similarity=-0.026 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HhHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN--VKVCNTLIDL 259 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 259 (509)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+....++ ...|..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 33445556666666666666666666542 22344566666666666666666666666666321111 2235666666
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 336 (509)
+...|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|++..+. .+.+...+..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777666666542 34456666666677777777777777666654 2223445555552333345777777
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHH
Q 010496 337 RYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR---LEDALNVVENM----PMKPN------EVVLGSLLAACRTKGDIILA 403 (509)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~a 403 (509)
..++++.+.. +.+...+..+...+...|+ +++|...++++ ...|+ ...|..+...|...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777776421 2335566666666666666 55566665554 11233 24677788888999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.+.++++++.+|+++.++..+.......
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999999887777766655444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-14 Score=135.43 Aligned_cols=248 Identities=11% Similarity=0.076 Sum_probs=191.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT-LGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
+..+|+.+...+.+.|++++|++.+++++... +-+...|..+..++...|+ +++|+..++++++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45567777777888888888888888888753 3356677777888888886 888888888888876 66778888888
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH-AGLIE 333 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~ 333 (509)
.++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++... -+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888763 4667888888888888888999999998888633 256778888888877 55546
Q ss_pred HH-----HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 010496 334 DG-----LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG--RLEDALNVVENMPMKP-NEVVLGSLLAACRTKG------- 398 (509)
Q Consensus 334 ~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 398 (509)
+| +..++++.+. .+-+...|..+...+...| ++++|++.+.++...| +...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 4778887742 2335778888888888887 6889998888875555 4668888888888764
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHHc
Q 010496 399 --DIILAERLMKYL-VDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 399 --~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 431 (509)
..++|.++++++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 899998888888887766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-15 Score=144.54 Aligned_cols=376 Identities=9% Similarity=0.007 Sum_probs=252.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccch---hHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 50 SSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCL---FLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.+...+.+.|++++|+.+|++..+.| .++ .+..+-..+... |+. +.|...+....+. ++..+..|..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-~~~--A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~ 77 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-YSE--AQVGLADIQVGT--RDPAQIKQAEATYRAAADT-----SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-CCT--GGGTCC-----------------------------------CHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhC-----CHHHHHHHHH
Confidence 36777888999999999999998876 233 333333333333 555 8888888888755 2667777887
Q ss_pred HHHhcC-----CchHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCHHH---HHHHHhcCCC-CCHhHHHHHHHHHHHcCCh
Q 010496 127 MYAKFG-----RMDLATVVFDAMRVK-SSFTWNAMIDGYMRRGDIES---AVRMFDEMPV-RDAISWTALLNGFVKRGYF 196 (509)
Q Consensus 127 ~~~~~g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~~~~ 196 (509)
++...| +.++|+..|++...+ +...+..|...|...+..++ +.+.+..... .++..+..+...|...+.+
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 666655 778999999988754 55577788888877665443 3334433322 2677888888999888866
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----CCHHHH
Q 010496 197 EEALECFREMQISGVEPDYVTIISVLNACANVG---TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC----GCIEFA 269 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a 269 (509)
+++......+.+.-...+...+..+...|...| +.++|.+.|++..+.| +++...+..|..+|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 655555444333222333447788888888899 8999999999999998 67777767788888665 799999
Q ss_pred HHHHHhccCCChhhHHHHHHH-H--HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHH
Q 010496 270 RQVFQRMHKRTLVSWNSIIVG-F--AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG-----LIEDGLRYFDI 341 (509)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~ 341 (509)
.+.|++....++..+..+... + ...+++++|+..|++..+.| +...+..|...|. .| ++++|...|++
T Consensus 237 ~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 237 QALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 999999884467788888877 4 46889999999999999876 5666666776666 45 89999999988
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENMPMKPNEVVLGSLLAACRT----KGDIILAERLMKYLVDL 413 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 413 (509)
.. .-+...+..|...|.. ..++++|..+|++.-...+......|...|.. ..+.++|...|+++.+.
T Consensus 313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 76 3456777788877776 34899999999887333345566666666653 45899999999999987
Q ss_pred CCCCCchHHHHHHHH--HHcCCchHHHHHHHHHHhC
Q 010496 414 DPGVDSNYVLLANMY--AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 414 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 447 (509)
+... ....+.... ...++..+|.++.++-++.
T Consensus 388 g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 388 DTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 7643 333333332 3334677788887766553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=159.61 Aligned_cols=143 Identities=12% Similarity=0.133 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010496 149 SFTWNAMIDGYMRRGDIESAVRMFDEMP-------VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221 (509)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 221 (509)
..+|+++|++|++.|++++|.++|.+|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997653 579999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCH-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---C------ChhhHHHHHHHH
Q 010496 222 LNACANVGTL-GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---R------TLVSWNSIIVGF 291 (509)
Q Consensus 222 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~l~~~~ 291 (509)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++.. + ...+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78999999999999999999999998777664 44444454431 1 133444555566
Q ss_pred HhCC
Q 010496 292 AVNG 295 (509)
Q Consensus 292 ~~~~ 295 (509)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=124.26 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=126.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45566777777777888888888887777643 3356667777777777788888888887777775 566777777777
Q ss_pred HHHhc-----------CCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010496 259 LYSRC-----------GCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324 (509)
Q Consensus 259 ~~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 324 (509)
++... |++++|+..|++..+ .+...|..+..++...|++++|+..|++.++.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77777 777777777776652 245566677777777777777777777777765 56666777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
++...|++++|+..|+++.+. .+.+...+..+...+.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777642 2234566667777777777777777766654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-16 Score=157.45 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=86.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMH-------KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTG 321 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 321 (509)
-..+|++||++||+.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777775543 46777777777777777777888888888888888888888888
Q ss_pred HHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 322 ALTACSHAGL-IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 322 li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
+|.++++.|+ .++|.++|++|. ..|+.||..+|++++..+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHH
Confidence 8888887776 467778888887 567888888887777665554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-13 Score=122.78 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=124.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCN 254 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 254 (509)
++.++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555666666666666666666666552 233445555555555 556666666666555543 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 010496 255 TLIDLYSR----CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH-- 328 (509)
Q Consensus 255 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 328 (509)
.+..+|.. .+++++|... |++..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~-------------------------------~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQY-------------------------------YSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHH-------------------------------HHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHH-------------------------------HHHHHHcC---CccHHHHHHHHHHcCC
Confidence 55555555 4555555444 44444432 33444444444544
Q ss_pred --cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010496 329 --AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENMPMKPNEVVLGSLLAACRT----KG 398 (509)
Q Consensus 329 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 398 (509)
.+++++|+..|++..+ .+ +...+..+...|.. .+++++|...+++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 5555555555555552 11 33444445555554 55555555555554211244555566666666 66
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCC
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAA----VGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 448 (509)
++++|...++++.+.++ +..+..++.+|.+ .+++++|.+.|++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777766644 4566667777776 677777777777766654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=122.00 Aligned_cols=205 Identities=15% Similarity=0.018 Sum_probs=101.4
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~- 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG- 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH-
Confidence 3444555555555555555555555555432 2234444444444555555555555555544443 223333333333
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
.+...|++++|.+.++++...+..| +...+..+...+...|++++|...
T Consensus 114 ------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 114 ------------------------------FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------------------HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------------HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444444311222 233444455555555555555555
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 339 FDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
++++.+.. +.+...+..+...|...|++++|...++++ ...| +...+..+...+...|++++|.+.++++.+..|.
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 55555321 223445555555555555565555555554 2222 3445555555666666666666666666666665
Q ss_pred CCc
Q 010496 417 VDS 419 (509)
Q Consensus 417 ~~~ 419 (509)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=138.66 Aligned_cols=262 Identities=14% Similarity=0.055 Sum_probs=164.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCcHhHHHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDY----VTIISVLNACANVGTLGIGLWIHRYVLKQ----D-FKDNVKVCNT 255 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 255 (509)
.+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++++++. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 44455566666666666666665542 1122 24555555566666666666666655543 1 1223445566
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---------ChhhHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q 010496 256 LIDLYSRCGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVNGF-----------------VGEALEYFNSMQK 309 (509)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~ 309 (509)
+..+|...|++++|...|+++.+. ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666654421 12355666666666666 6677666666543
Q ss_pred C----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 010496 310 E----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-P 379 (509)
Q Consensus 310 ~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 379 (509)
. +..+ ...++..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|.+.+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 1235666777777888888888888777642211111 236777788888888888888888765 1
Q ss_pred ----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 380 ----MKP---NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 380 ----~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
... ...++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 14577778888888999999999998888764432 23688888999999999999999988765
Q ss_pred C
Q 010496 447 R 447 (509)
Q Consensus 447 ~ 447 (509)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-13 Score=120.17 Aligned_cols=187 Identities=10% Similarity=-0.013 Sum_probs=137.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-DAISWTALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVL 222 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 222 (509)
++.++..+...+...|++++|...|+....+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6678888999999999999999999977655 67889999999999 999999999999999875 678888899
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccCC-ChhhHHHHHHHHHh
Q 010496 223 NACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFARQVFQRMHKR-TLVSWNSIIVGFAV 293 (509)
Q Consensus 223 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 293 (509)
..+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+. +...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 99998 999999999999999875 66777778888877 77777777777665432 33445555555554
Q ss_pred ----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhH
Q 010496 294 ----NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH----AGLIEDGLRYFDIMK 343 (509)
Q Consensus 294 ----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~ 343 (509)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 555555555555555432 23334444444444 455555555555444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-14 Score=125.97 Aligned_cols=230 Identities=8% Similarity=-0.021 Sum_probs=189.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChh----hHHHHH
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLV----SWNSII 288 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~ 288 (509)
...+......+...|++++|...++++++.. +.+..++..+..+|...|++++|...++++.+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788999999999999999999886 56677899999999999999999999998875 2332 488999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
..+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999863 335678889999999999999999999999842 334577788787344445699
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCCC-----chHHHHHHHHHHcCCch
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAACRTKGD---IILAERLMKYLVDLD---PGVD-----SNYVLLANMYAAVGKWD 435 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~g~~~ 435 (509)
++|.+.++++ ...| +...+..+...+...|+ +++|...++++++.. |.+. .+|..++..|.+.|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999887 4455 46788888888888888 888999999998865 3321 47888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 010496 436 GAGKIRRTMKGRG 448 (509)
Q Consensus 436 ~A~~~~~~m~~~~ 448 (509)
+|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-14 Score=131.50 Aligned_cols=228 Identities=12% Similarity=0.051 Sum_probs=194.9
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHhccC---CChhhHHHHHHH
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC-IEFARQVFQRMHK---RTLVSWNSIIVG 290 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 290 (509)
...|..+..++...|++++|+..++++++.. |.+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567777888899999999999999999987 7789999999999999997 9999999999873 467899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCChH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR-AGRLE 369 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 369 (509)
+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++.+. .+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999973 336788899999999999999999999999953 23468889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC--------
Q 010496 370 DA-----LNVVENM-PMKP-NEVVLGSLLAACRTKG--DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG-------- 432 (509)
Q Consensus 370 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 432 (509)
+| ++.+++. .+.| +...|..+...+...| ++++|.+.+.++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777665 5566 5678998888888888 689999999998 888888889999999999874
Q ss_pred -CchHHHHHHHHH-HhC
Q 010496 433 -KWDGAGKIRRTM-KGR 447 (509)
Q Consensus 433 -~~~~A~~~~~~m-~~~ 447 (509)
.+++|+++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258999999998 553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=126.79 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=106.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhC
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN 294 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 294 (509)
|..+...+...|++++|..+++++.+.. +.+..++..+..++...|++++|.+.|+++. ..+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3334444444444455544444444433 3344444445555555555555555554443 12344455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNV 374 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 374 (509)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666555542 224455555666666666666666666666632 123455566666666666666666666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 375 VENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 375 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
++++ ...| +..++..+...+...|++++|.+.++++++..|.++..+..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6654 2222 455666666777777777777777777777777666555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=133.77 Aligned_cols=336 Identities=12% Similarity=-0.013 Sum_probs=232.0
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc---hHHHHHHHhcCCCChHHHHHHHHHHHhCC-----CHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM---DLATVVFDAMRVKSSFTWNAMIDGYMRRG-----DIES 167 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 167 (509)
|+++.|...+....+.| ++.++..|..+|...|+. ++|+..|++....++..+..+...+...+ ++++
T Consensus 17 g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 89999999999998886 245566778888888888 99999999988777777778877666655 7889
Q ss_pred HHHHHhcCCCC-CHhHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 168 AVRMFDEMPVR-DAISWTALLNGFVKRGYFE---EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 168 A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
|...|+....+ +..++..|...|...+... ++.+.+......| +......+...|...+.++++......+.+
T Consensus 93 A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~ 169 (452)
T 3e4b_A 93 AESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICK 169 (452)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99999877654 5668888888888776544 4555555555544 345566677777777755444443333322
Q ss_pred cCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhccCC---ChhhHHHHHHHHHhC----CChHHHHHHHHHHHHCCCC
Q 010496 244 QDFKDNVKVCNTLIDLYSRCG---CIEFARQVFQRMHKR---TLVSWNSIIVGFAVN----GFVGEALEYFNSMQKEGFK 313 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~~g~~ 313 (509)
.-...+...+..|..+|...| ++++|++.|++..+. +...+..+...|... +++++|+..|++.. .|
T Consensus 170 ~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-- 246 (452)
T 3e4b_A 170 AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-- 246 (452)
T ss_dssp HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG--
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC--
Confidence 222334448889999999999 999999999988643 333446677777654 79999999999988 43
Q ss_pred CCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHH
Q 010496 314 PDGVSFTGALTA-C--SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG-----RLEDALNVVENMPMKPNEV 385 (509)
Q Consensus 314 p~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~ 385 (509)
+...+..+... + ...+++++|...|++..+ .+ +...+..|...|. .| ++++|.++|++.- ..+..
T Consensus 247 -~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~ 319 (452)
T 3e4b_A 247 -YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVA 319 (452)
T ss_dssp -STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHH
T ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHH
Confidence 34455555555 3 568999999999999984 33 6677788888887 45 9999999999988 66788
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 010496 386 VLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA----VGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 386 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 450 (509)
.+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|...|++..+.|..
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888877766 349999999999998754 56788999999985 46899999999999998854
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-14 Score=134.25 Aligned_cols=268 Identities=13% Similarity=0.084 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC---CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhH
Q 010496 150 FTWNAMIDGYMRRGDIESAVRMFDEMPV---RD----AISWTALLNGFVKRGYFEEALECFREMQIS----GVEP-DYVT 217 (509)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~ 217 (509)
..+......+...|++++|...|+.... .+ ...+..+...+...|++++|...+++.... +-.| ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344455555556666666666554421 12 234555555556666666666665554332 1111 1233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC----C-CcHhHHHHHHHHHHhcCC--------------------HHHHHHH
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDF----K-DNVKVCNTLIDLYSRCGC--------------------IEFARQV 272 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~ 272 (509)
+..+...+...|++++|...++++.+... + ....++..+..+|...|+ +++|.+.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 44455555555666666655555543210 0 012245555555555555 5555555
Q ss_pred HHhccC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHH
Q 010496 273 FQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF-KPD----GVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 273 ~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
+++..+ . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 544321 0 112344444555555555555555555443200 011 11344444445555555555555
Q ss_pred HHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 010496 339 FDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-P---MKPN----EVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 339 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
+++..+...-..+ ..++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5544421110011 233444444555555555555554443 0 0011 22444444445555555555555
Q ss_pred HHHHHhcCCCC
Q 010496 407 MKYLVDLDPGV 417 (509)
Q Consensus 407 ~~~~~~~~~~~ 417 (509)
++++++..+..
T Consensus 330 ~~~al~~~~~~ 340 (406)
T 3sf4_A 330 AEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55555444333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-14 Score=127.33 Aligned_cols=237 Identities=8% Similarity=-0.127 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHH
Q 010496 162 RGDIESAVRMFDEMPVR-------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 234 (509)
.|++++|+..|+.+... +..++..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45566666666655431 45567777788888888888888888887753 34567777788888888888888
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 312 (509)
...++++++.. +.+..++..+..+|...|++++|.+.|+++.+ |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888888765 55677788888888888888888888887753 333333444445566688888888887777652
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 010496 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-----IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVV 386 (509)
Q Consensus 313 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 386 (509)
+++...+ .++..+...++.++|...++++.+ ..|. ...+..+...|.+.|++++|...++++ ...|+..
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 249 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF- 249 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC-
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH-
Confidence 3333333 366667777888888888887762 2221 467788888888889999998888876 5556332
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 010496 387 LGSLLAACRTKGDIILAERLM 407 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~ 407 (509)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 22244566777888877765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=133.16 Aligned_cols=264 Identities=15% Similarity=0.060 Sum_probs=185.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCcHhHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPD----YVTIISVLNACANVGTLGIGLWIHRYVLKQ----DF-KDNVKVC 253 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 253 (509)
+......+...|++++|..+|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777777777777777777653 222 245666677777777777777777766543 11 1224566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCC--------------------hHHHHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGF--------------------VGEALEYF 304 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 304 (509)
..+..+|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777777788888888877776542 12 2366777777777777 78888877
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 010496 305 NSMQKE----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVV 375 (509)
Q Consensus 305 ~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 375 (509)
++.... +..+ ....+..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 1111 1346667777888899999999998887642211111 336778888899999999999988
Q ss_pred HhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHH
Q 010496 376 ENM-P---MKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 376 ~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
++. . ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 775 1 1112 4577888889999999999999999998865442 236888999999999999999999
Q ss_pred HHHHhC
Q 010496 442 RTMKGR 447 (509)
Q Consensus 442 ~~m~~~ 447 (509)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-13 Score=116.60 Aligned_cols=133 Identities=13% Similarity=-0.017 Sum_probs=54.2
Q ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 284 WNSIIVGFAVN-GFVGEALEYFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 284 ~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHH
Confidence 33333334444 444444444444433111122 233344444444444444444444444421 11123334444444
Q ss_pred HHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 362 YSRAGRLEDALNVVENM-PMK--PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.+..|+++
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 44444444444444433 111 1233333344444444555555555555444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-13 Score=119.09 Aligned_cols=194 Identities=12% Similarity=0.001 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010496 149 SFTWNAMIDGYMRRGDIESAVRMFDEMP---VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225 (509)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 225 (509)
...+..+...+...|++++|.+.|+.+. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5678888999999999999999998764 3478889999999999999999999999998864 44678888999999
Q ss_pred HccCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHH
Q 010496 226 ANVGTLGIGLWIHRYVLKQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
...|++++|.++++++.+.+. +.+...+..+..++...|++++|.+.|+++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988322 34677888889999999999999999988753 35677888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
..++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888887753 34566777777888888888888888888874
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-13 Score=117.62 Aligned_cols=198 Identities=12% Similarity=-0.005 Sum_probs=164.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 324 (509)
.+..++..++..+...|++++|.+.|+++. ..+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345566777777777777777777777654 2345677778888888888888888888888763 346778888999
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010496 325 ACSHA-GLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 325 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 400 (509)
.+... |++++|...++++.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999994 333443 678889999999999999999999887 3344 577899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 401 ILAERLMKYLVDLDP-GVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88888989999999999999999999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-14 Score=123.00 Aligned_cols=198 Identities=10% Similarity=0.059 Sum_probs=156.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 324 (509)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.... +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556788888999999999999999999864 356788899999999999999999999999863 346788888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 402 (509)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999853 2446778899999999999999999999887 3334 67789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 403 AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
|...++++++..|.++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999988899999999999999999999999998753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=135.12 Aligned_cols=261 Identities=14% Similarity=0.064 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-C----hHHHHHHHHHHHhCCCHHHHHHHHhcCCC-------C--CHh
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRV--K-S----SFTWNAMIDGYMRRGDIESAVRMFDEMPV-------R--DAI 181 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~ 181 (509)
...+..+...+...|++++|+..|+++.. + + ...+..+...+...|++++|...|+.... + ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 55666677777777777777777776652 2 2 24566677777777777777777765421 1 244
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccCC--------------------HHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGV-EPD----YVTIISVLNACANVGT--------------------LGIGLW 236 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 236 (509)
++..+...+...|++++|...+++...... .++ ..++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 566677777777777777777777655310 011 2356666677777777 777777
Q ss_pred HHHHHHHc----CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHH
Q 010496 237 IHRYVLKQ----DF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 237 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
.+.+..+. +. +....++..+..+|...|++++|...+++..+ ++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766543 11 11234566777777777777777777776652 11 1266677777777777777777
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010496 303 YFNSMQKEGFK-PD----GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 303 ~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 373 (509)
.+++....... ++ ..++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77776642100 11 345666677777777777777777776642211111 4456667777777777777777
Q ss_pred HHHhC
Q 010496 374 VVENM 378 (509)
Q Consensus 374 ~~~~~ 378 (509)
.+++.
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=110.42 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=128.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
+...|..+...|...|++++|++.|++.++.. +-+...+..+..++.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777788888888888777753 225567777777888888888888888887742 233466677777
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 437 (509)
..+...++++.|...+.+. ...| +...+..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7788888888888888776 3334 5667888888889999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHhC
Q 010496 438 GKIRRTMKGR 447 (509)
Q Consensus 438 ~~~~~~m~~~ 447 (509)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999988764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=134.27 Aligned_cols=192 Identities=10% Similarity=0.003 Sum_probs=138.0
Q ss_pred CcHhHHHHHHHHHHhcCCH-HHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCI-EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
.+...+..+..+|...|++ ++|++.|+++.+ .+...|..+..+|...|++++|+..|++.++. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3444555555555555555 555555555431 23455666666666666666667767666664 45566677777
Q ss_pred HHHhcc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC---
Q 010496 324 TACSHA---------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA--------GRLEDALNVVENM-PMKP--- 382 (509)
Q Consensus 324 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p--- 382 (509)
.++... |++++|+..++++.+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 777777 7888888888887742 233567777788888777 8888888888776 4445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 383 -NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 383 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
+...|..+..+|...|++++|.+.|+++++..|.++..+..++.++...|++++|++.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888999999999999999999999999999888899999999999999998876543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-13 Score=129.36 Aligned_cols=234 Identities=12% Similarity=0.039 Sum_probs=139.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCcHhH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQIS----GV-EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ----D-FKDNVKV 252 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 252 (509)
+..+...|...|++++|...+++..+. +- ......+..+...+...|++++|...++++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444455555555544444331 00 111233444455555555555555555554432 1 1122335
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHHhccC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 253 CNTLIDLYSRCGC-----------------IEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 253 ~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
+..+..+|...|+ +++|.+.+++..+ . ...++..+...+...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 6666665555431 1 123566667777777777777777777
Q ss_pred HHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 307 MQKEGFK-PD----GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP----RIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 307 m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
..+.... ++ ...+..+...+...|++++|...++++.+...-.. ...++..+...|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6553110 11 22566777778888888888888887764221111 145677788888888999888888877
Q ss_pred C-CC------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 378 M-PM------KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 378 ~-~~------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
. .. .+ ...++..+...+...|++++|.+.++++++....
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6 11 11 1347778888999999999999999999887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-12 Score=121.69 Aligned_cols=227 Identities=8% Similarity=-0.014 Sum_probs=119.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC------CCcHhHHH
Q 010496 186 LLNGFVKRGYFEEALECFREMQIS----GVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDF------KDNVKVCN 254 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 254 (509)
....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776553 1011 134556666667777777777777766654310 11134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKE----GF-KPDGVSFT 320 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~ 320 (509)
.+..+|...|++++|.+.|++..+ .+ ..++..+..+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666666666777666666665542 11 124555666666666666666666665541 12 22234455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC---CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 010496 321 GALTACSHAGLIEDGLRYFDIMKKIYR---VSPRIEHYGCIVDLYSRAGR---LEDALNVVENMPMKPNE-VVLGSLLAA 393 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~ 393 (509)
.+..++.+.|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 555666666666666666665543111 11111223444445555555 55555555555333322 234444455
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010496 394 CRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~ 412 (509)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-13 Score=122.58 Aligned_cols=235 Identities=12% Similarity=0.060 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----cHh
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQIS----GVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDF-KD----NVK 251 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~ 251 (509)
.+..+...+...|++++|.+.+++.... +..| ....+..+...+...|++++|...+++..+... .. ...
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444444455555555555554443321 1011 123344445555555555555555555443210 00 122
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHhccC-----C----ChhhHHHHHHHHHhCCChHHHHH
Q 010496 252 VCNTLIDLYSRCGC--------------------IEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 252 ~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
++..+...|...|+ +++|.+.+++..+ . ...++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555556666666 6666655555431 1 12356666667777777777777
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010496 303 YFNSMQKEGF-KPD----GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 303 ~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 373 (509)
.+++..+... .++ ..++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7776654210 011 235667777788888888888888877642211111 4567778888888899998888
Q ss_pred HHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 374 VVENM-PM---KPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 374 ~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+++. .. ..+ ..++..+...+...|++++|...++++++..+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88775 11 111 347778888899999999999999999887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=123.90 Aligned_cols=225 Identities=10% Similarity=0.014 Sum_probs=174.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhhHH
Q 010496 221 VLNACANVGTLGIGLWIHRYVLKQ----DFKD-NVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RT-----LVSWN 285 (509)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 285 (509)
....+...|++++|...++++.+. +-++ ...++..+..+|...|++++|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778999999999999999875 2111 356789999999999999999999988752 11 24788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCCHHHHH
Q 010496 286 SIIVGFAVNGFVGEALEYFNSMQKEGF-KPD----GVSFTGALTACSHAGLIEDGLRYFDIMKKI---YRV-SPRIEHYG 356 (509)
Q Consensus 286 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 356 (509)
.+...|...|++++|+..+++..+... .++ ..++..+..+|...|++++|...+++..+. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998875311 111 247788889999999999999999998741 122 23467788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 357 CIVDLYSRAGRLEDALNVVENM-PM-----KPN-EVVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
.+...|.+.|++++|...+++. .. .|. ...+..+...+...|+ +++|..++++. ...+.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886 11 121 2245667778888888 77777777766 222223446889999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010496 427 MYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~ 446 (509)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-10 Score=113.94 Aligned_cols=403 Identities=8% Similarity=0.021 Sum_probs=273.5
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccc---hhHHHHHHHHHHHhCCCCCc
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQC---LFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~ 117 (509)
.+-|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+. ++ .+.+..+|+..+.....+.+
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHhcCCCCC
Confidence 3468999999999999999999999999999985 344556677667666666 77 99999999999887632234
Q ss_pred hHHHHHHHHHHHhcCCc--------hHHHHHHHhcC------CC-ChHHHHHHHHHHHh---------CCCHHHHHHHHh
Q 010496 118 VMVGTALLDMYAKFGRM--------DLATVVFDAMR------VK-SSFTWNAMIDGYMR---------RGDIESAVRMFD 173 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~ 173 (509)
+..|..-+....+.++. +...++|+... .+ +...|...+..... .++++.+..+|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88888877766666554 33447777643 23 45678877765442 345788899998
Q ss_pred cCCCC---C-HhHH---HHHHHHH----------HHcCChHHHHHHHHHHHHc--CCC---CC-----------------
Q 010496 174 EMPVR---D-AISW---TALLNGF----------VKRGYFEEALECFREMQIS--GVE---PD----------------- 214 (509)
Q Consensus 174 ~~~~~---~-~~~~---~~li~~~----------~~~~~~~~A~~~~~~m~~~--~~~---p~----------------- 214 (509)
..... + ...| ..+.... -...++..|...+.++... ++. |.
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 77642 1 1222 2222111 0011233444555443221 111 11
Q ss_pred ---HhHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHHhccC---CC
Q 010496 215 ---YVTIISVLNACANVG-------TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR-QVFQRMHK---RT 280 (509)
Q Consensus 215 ---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~ 280 (509)
...|...+..--..+ ..+.+..+|++++... +.+..+|...+..+...|+.++|. ++|++... .+
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s 377 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC
Confidence 122333333322222 1244567888888774 678888999999888999988886 99988763 35
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF---------KPD------------GVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
...|...+......|+++.|.++|++++.... .|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56677788888899999999999999886410 132 235777777777889999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 340 DIMKKIYRVSPRIEHYGCIVDLYSRA-GRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.++.+..+ ......|...+..-.+. ++.+.|..+|+.. + ..-+...|...+......|+.+.|..+|++++...|+
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 99985311 12234454444444444 4589999999886 3 3335667778888888899999999999999998773
Q ss_pred ---CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 417 ---VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 417 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33568888888889999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=125.41 Aligned_cols=165 Identities=11% Similarity=0.064 Sum_probs=104.4
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQIS-------GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ------D 245 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 245 (509)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|..+++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3566778888888888888888888887763 11223456667777788888888888888877754 2
Q ss_pred -CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---
Q 010496 246 -FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE--- 310 (509)
Q Consensus 246 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--- 310 (509)
.+....++..+..+|...|++++|.+.|+++.+. ....+..+...+...|++++|+..++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1233556677777777777777777777665421 1234555566666666666666666665543
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 311 ---GFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 311 ---g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..|. ..++..+..++...|++++|...++++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11222 2344555555666666666666666655
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.1e-11 Score=108.09 Aligned_cols=218 Identities=10% Similarity=0.028 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 197 EEALECFREMQISGVEPDYVTIISVLNACA-------NVGTL-------GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
++|..+|++..... +-+...|..++..+. ..|++ ++|..+|++.++.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 335566666665554 34664 7788888887773124556677778888888
Q ss_pred cCCHHHHHHHHHhccC--C-Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHH
Q 010496 263 CGCIEFARQVFQRMHK--R-TLV-SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS-HAGLIEDGLR 337 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~a~~ 337 (509)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888877664 2 233 67777777777888888888888877753 223334433332221 2578888888
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010496 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P---MKP--NEVVLGSLLAACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 411 (509)
+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.++|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877532 235667777777788888888888888776 2 244 35577777777777888888888888888
Q ss_pred hcCCCCC
Q 010496 412 DLDPGVD 418 (509)
Q Consensus 412 ~~~~~~~ 418 (509)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-10 Score=109.68 Aligned_cols=264 Identities=11% Similarity=-0.008 Sum_probs=175.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCc----HhHHH
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYV----TIISVLNACANVGTLGIGLWIHRYVLKQDF-KDN----VKVCN 254 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 254 (509)
......+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+++..+... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667788888888888776643111221 344556667778888888888877765310 011 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC----------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHHH
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHK----------R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK--P--DGVSF 319 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~ 319 (509)
.+...+...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677778888888888888877642 1 1234566777788888888888888887764221 1 23456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYG-----CIVDLYSRAGRLEDALNVVENMP-MKPN-----EVVLG 388 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~ 388 (509)
..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777788888999999999888774322111111111 23344778899999999998872 2221 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+...+...|++++|...++++.+..+.. ...+..++.++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77788889999999999999887753321 125677788889999999999999887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-11 Score=112.52 Aligned_cols=227 Identities=12% Similarity=0.052 Sum_probs=123.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----C-CcHhHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGV-EPD----YVTIISVLNACANVGTLGIGLWIHRYVLKQDF-----K-DNVKVC 253 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 253 (509)
.....+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.+..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777788777777765310 122 33556666677777777777777776664310 1 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQK-----EGFKPDGVSF 319 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~ 319 (509)
+.+..+|...|++++|.+.|++..+ .+ ..++..+..+|...|++++|+..+++... .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 6667777777777777776665542 11 13455566666666666666666666554 21 1124455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCC--C-CHHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVS--P-RIEHYGCIVDLYSRAGR---LEDALNVVENMPMKPNE-VVLGSLLA 392 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~ 392 (509)
..+..++.+.|++++|...+++..+...-. + ....+..+...|...++ +.+|+..+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555666666666666666666655322211 1 12234444444455555 55555555554333322 23444555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 010496 393 ACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~ 412 (509)
.|...|++++|...++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-11 Score=108.79 Aligned_cols=212 Identities=8% Similarity=-0.011 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-------cCCH-------HHHHHHHHhccC---C-ChhhHHHHHHHHHh
Q 010496 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR-------CGCI-------EFARQVFQRMHK---R-TLVSWNSIIVGFAV 293 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 293 (509)
++|..+|+++++.. |.+...|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999999875 7788899888888764 5885 899999998765 2 45689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH-hcCChHH
Q 010496 294 NGFVGEALEYFNSMQKEGFKPD-GV-SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS-RAGRLED 370 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 370 (509)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+.+...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 7888889999999999999999999942 2334555554443322 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 371 ALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDL---DPG-VDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 371 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
|..+|++. ...| +...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 3334 5778999999999999999999999999996 343 4557889999999999999999999999
Q ss_pred HhCC
Q 010496 445 KGRG 448 (509)
Q Consensus 445 ~~~~ 448 (509)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-11 Score=100.82 Aligned_cols=162 Identities=11% Similarity=0.096 Sum_probs=94.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
++..|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34556666666666666666666666665542 2245555566666666666666666666665554 444555555566
Q ss_pred HHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
.+...++++.|...+.+.. ..+...+..+..++...|++++|++.|++..+.. +.+..++..+..++.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 6666666666666665543 2244555555666666666666666666665542 22445555566666666666666
Q ss_pred HHHHHHhH
Q 010496 336 LRYFDIMK 343 (509)
Q Consensus 336 ~~~~~~~~ 343 (509)
+..|+++.
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=120.06 Aligned_cols=246 Identities=15% Similarity=0.074 Sum_probs=153.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--------C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHc------C
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPV--------R---DAISWTALLNGFVKRGYFEEALECFREMQIS------G 210 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~ 210 (509)
...++..+...+...|++++|..+|+++.. . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345677888888999999999998887653 1 3556778888899999999999999888764 2
Q ss_pred CCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---
Q 010496 211 VEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQ------DF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--- 279 (509)
Q Consensus 211 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 279 (509)
-.| ....+..+...+...|++++|..+++++.+. +. +....++..+..++...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 3556777888888999999999999888764 21 234566788888899999999999888876531
Q ss_pred --------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 010496 280 --------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 351 (509)
Q Consensus 280 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 351 (509)
...++..+...+...|++++|...++++.+.. |+. .+..+- ....... ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HH
Confidence 23467778888889999999999998887631 110 000000 0000000 00
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENMP-MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
...+..+...+...+.+.++...++... ..| +..++..+..+|...|++++|.+.++++++..|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1111222223333444445555554442 223 234666667777777777777777777766544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.3e-12 Score=126.46 Aligned_cols=163 Identities=14% Similarity=0.171 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..+|+.+...+.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..|+++.+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4566777777777777777777777777652 2245677777778888888888888888877421 224677888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 438 (509)
+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|++.|+++++.+|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888776 4555 46688888899999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHh
Q 010496 439 KIRRTMKG 446 (509)
Q Consensus 439 ~~~~~m~~ 446 (509)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=119.89 Aligned_cols=208 Identities=13% Similarity=0.025 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTL-GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
+++++..++...... +.+...+..+..++...|++ ++|.+.|+++++.. +.+..++..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555444321 23455555666666666666 66666666666654 4455666666666666666666666666
Q ss_pred hccC--CChhhHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CCHHHH
Q 010496 275 RMHK--RTLVSWNSIIVGFAVN---------GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA--------GLIEDG 335 (509)
Q Consensus 275 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~~~a 335 (509)
++.+ |+...+..+...+... |++++|+..|++.++.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6542 3445555566666666 66677777777666642 22455666666666666 667777
Q ss_pred HHHHHHhHHhcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 336 LRYFDIMKKIYRVS---PRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMK 408 (509)
Q Consensus 336 ~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (509)
+..|+++.+.. + .+...|..+..+|...|++++|.+.|++. ...| +...+..+...+...|++++|.+.+.
T Consensus 241 ~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777766321 1 25666667777777777777777777665 3334 34466666666666666666665443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-11 Score=101.75 Aligned_cols=130 Identities=14% Similarity=0.021 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAA 393 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 393 (509)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ . ...+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 334444444444445555555555544421 1223444444555555555555555555544 1 12245566666667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+...|++++|...++++.+..|.++..+..++.++...|++++|.+.++++.+.
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777777777777677777777777777777777777776653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-11 Score=105.62 Aligned_cols=190 Identities=13% Similarity=-0.008 Sum_probs=129.9
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 4556777788888888888888888887652 566666667778888888888888888887752 22445677777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRI-------EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---EVVLGSLLA 392 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~ 392 (509)
.++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.+++. ...|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 77888888888888888887432 2233 45666777777788888888888775 55665 345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++... +...++++....+.+...|... .....+.+++|+..+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 66443 3445666666655554333332 234456679999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-11 Score=114.61 Aligned_cols=226 Identities=10% Similarity=-0.022 Sum_probs=170.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhhH
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQD--FK---DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RT-----LVSW 284 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~ 284 (509)
.....+...|++++|...++++.+.. .+ ....++..+..+|...|+++.|...+++..+ ++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34556788999999999999998652 11 1356788999999999999999999887652 12 3478
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCCHHHHH
Q 010496 285 NSIIVGFAVNGFVGEALEYFNSMQKE----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIY---RVSPRIEHYG 356 (509)
Q Consensus 285 ~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 356 (509)
+.+..+|...|++++|++.|++..+. +..+ ...++..+..++...|++++|...+++..+.. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999988763 1111 13467788889999999999999999987411 2223367788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 357 CIVDLYSRAGRLEDALNVVENM----PM--KPN-EVVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
.+...|.+.|++++|...+++. .. .|. ...+..+...+...++ +.+|...+++.. ..+.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 8999999999999999999876 11 222 3356666666777788 777777777621 11223346788999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010496 427 MYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~ 446 (509)
.|...|++++|.+.|++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-10 Score=101.68 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=159.7
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHH
Q 010496 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIV 289 (509)
Q Consensus 213 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 289 (509)
.|+..+......+...|++++|...|+++++...+++...+..+..++...|++++|++.|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888889999999999999999999999873378888888999999999999999999998743 4568899999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHH
Q 010496 290 GFAVNGFVGEALEYFNSMQKEGFKPDG-------VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR---IEHYGCIV 359 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 359 (509)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999999863 2234 4577778888999999999999999983 3454 56778888
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 360 DLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
.+|...|+. .++++ . ...+...|.... ....+.+++|...++++++..|+++.+...+...
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888766543 22332 1 122344444433 3345679999999999999999987776666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-10 Score=93.81 Aligned_cols=152 Identities=15% Similarity=0.057 Sum_probs=70.5
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
.+...+...|++++|...|+.+... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 3344444444444444444444321 34445555555555555555555555555432 2234444455555555555
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
+++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+ .+...+..+...+...|++++|...++++
T Consensus 92 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 92 YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555443 33444444444444444444444444444321 12333344444444444444444444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-08 Score=101.80 Aligned_cols=383 Identities=7% Similarity=-0.059 Sum_probs=259.4
Q ss_pred hhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC---chHH
Q 010496 61 IAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR---MDLA 137 (509)
Q Consensus 61 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A 137 (509)
..+.+..|++.+... +-|..+|..++..+... +....++.+++.++..- |.+...|..-+..-.+.|+ ++.+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 344555666666553 44888999999988877 89999999999999884 6668899999999888899 9999
Q ss_pred HHHHHhcCC-----CChHHHHHHHHHHHhCCCH--------HHHHHHHhcC-------CCCCHhHHHHHHHHHH------
Q 010496 138 TVVFDAMRV-----KSSFTWNAMIDGYMRRGDI--------ESAVRMFDEM-------PVRDAISWTALLNGFV------ 191 (509)
Q Consensus 138 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~-------~~~~~~~~~~li~~~~------ 191 (509)
..+|++... ++...|...+....+.++. +.+.++|+.. ...+...|...+....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 999999873 6777888887766665543 3344666642 1224567777665443
Q ss_pred ---HcCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHH----------ccCCHHHHHHHHHHHHHc--CC----CCc
Q 010496 192 ---KRGYFEEALECFREMQISGVEPDYVTIIS---VLNACA----------NVGTLGIGLWIHRYVLKQ--DF----KDN 249 (509)
Q Consensus 192 ---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---l~~~~~----------~~~~~~~a~~~~~~~~~~--~~----~~~ 249 (509)
..++.+.+..+|+.++......-..+|.. +..... ...+++.|...+.++... ++ +..
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 23457788999999885321111233322 221110 012234455555443321 11 110
Q ss_pred -------------------HhHHHHHHHHHHhcC-------CHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHH
Q 010496 250 -------------------VKVCNTLIDLYSRCG-------CIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 250 -------------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 300 (509)
...|...+..-...+ ..+.+..+|+++. ......|...+..+...|+.++|
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence 134555554433322 1334556677765 34667888888888889999999
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--------CCCC------------CHHHHHHHH
Q 010496 301 L-EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY--------RVSP------------RIEHYGCIV 359 (509)
Q Consensus 301 ~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~------------~~~~~~~li 359 (509)
. .+|++.... ++.+...+...+....+.|+++.|..+|+++.+.. ...| ...+|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 999999875 44455566677777888999999999999998421 0013 134678888
Q ss_pred HHHHhcCChHHHHHHHHhCC-C--CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 360 DLYSRAGRLEDALNVVENMP-M--KPNEVVLGSLLAACRTK-GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~-~--~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
....+.|..+.|..+|.++. . .+....|...+..-.+. ++.+.|.++|+.+++..|.++..+...+......|+.+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 88888999999999998872 2 12334444333333344 45899999999999999988888889999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 010496 436 GAGKIRRTMKGRGI 449 (509)
Q Consensus 436 ~A~~~~~~m~~~~~ 449 (509)
.|..+|++......
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-09 Score=101.93 Aligned_cols=232 Identities=12% Similarity=0.006 Sum_probs=128.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-cH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGV-EPD----YVTIISVLNACANVGTLGIGLWIHRYVLKQ----DFK--D-NV 250 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 250 (509)
++.+...+...|++++|...+++...... .++ ..++..+...+...|++++|...+++..+. +.+ | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 34445555556666666666655543210 011 122344555566666666666666665542 111 1 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC--C------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHH
Q 010496 251 KVCNTLIDLYSRCGCIEFARQVFQRMHK--R------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD--GVSFT 320 (509)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~ 320 (509)
.++..+..++...|++++|...+++... + ...++..+...+...|++++|...+++.......++ .....
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 3455566666666777777666665431 1 123455666667777777777777777654311111 11111
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-HH
Q 010496 321 ----GALTACSHAGLIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRLEDALNVVENM-------PMKPNE-VV 386 (509)
Q Consensus 321 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~ 386 (509)
..+..+...|++++|...+++........+ ....+..+...+...|++++|...+++. +..++. ..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 222335677888888887777763111110 1224556677777788888887777665 111122 25
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
+..+..++...|+.++|...+++++...
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 5556677788888888888888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-10 Score=115.18 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=104.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+..+|+.|...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|++.|+++++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35566666667777777777777777666642 2235566666666777777777777777766665 455666666777
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
+|...|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++.++.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 77777777777777666542 345566666777777777777777777766642 12345666666666677776666
Q ss_pred HHHHHHhH
Q 010496 336 LRYFDIMK 343 (509)
Q Consensus 336 ~~~~~~~~ 343 (509)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=105.45 Aligned_cols=187 Identities=10% Similarity=0.014 Sum_probs=119.6
Q ss_pred HHHHhcCCHHHHHHHHHhccCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HHHHHHHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF---KPD--GVSFTGAL 323 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~li 323 (509)
..|...|++++|.+.|++..+- + ..+|+.+..+|...|++++|+..|++.+.... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666554321 1 24566667777777777777777776654210 111 34667777
Q ss_pred HHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-----HHHHH
Q 010496 324 TACSHA-GLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---E-----VVLGS 389 (509)
Q Consensus 324 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~ 389 (509)
..|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++|+..+++. ...|+ . ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 788885 8999998888888743211111 356778888899999999999998876 22222 1 15677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--HcCCchHHHHHHHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDSN-----YVLLANMYA--AVGKWDGAGKIRRTM 444 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 444 (509)
+..++...|++++|...++++++..|..... +..++.+|. ..+++++|++.|+++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 7788889999999999999999988874432 344556554 346677888877554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-11 Score=107.67 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=84.8
Q ss_pred HcCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHhHHHHHH
Q 010496 192 KRGYFEEALECFREMQIS-------GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ------DF-KDNVKVCNTLI 257 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 257 (509)
..|++++|+.++++..+. ..+....++..+...+...|++++|...++++++. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345556666655555431 11123455666677777777777777777776654 11 22345666667
Q ss_pred HHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHK-------R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE------GFKP-DGVSF 319 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~ 319 (509)
.+|...|++++|.+.|+++.+ + ...++..+...+...|++++|+..++++... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777777777777776665542 1 1234555555666666666666666655543 1122 12344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
..+..++...|++++|...++++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555556666666666665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-10 Score=102.95 Aligned_cols=215 Identities=11% Similarity=-0.026 Sum_probs=104.7
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHHccCCHHHHHHHHH
Q 010496 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS----GVEPD-YVTIISVLNACANVGTLGIGLWIHR 239 (509)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (509)
+++|.+.|+. ....|...|++++|.+.|.+.... |-.++ ..+|..+..+|...|++++|...++
T Consensus 33 ~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666665543 355666777777777777666442 11111 3455556666666666666666666
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCC-CC--
Q 010496 240 YVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN-GFVGEALEYFNSMQKEGFK-PD-- 315 (509)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~-p~-- 315 (509)
+.++.. ...|+...+ ..+++.+...|... |++++|+..|++.++.... .+
T Consensus 102 ~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 102 NAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 555421 001111110 12344445555553 5555555555555442100 00
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH--
Q 010496 316 --GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI-----EHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-- 385 (509)
Q Consensus 316 --~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 385 (509)
..++..+...+.+.|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2345555556666666666666666665321111111 13455555666666666666666654 3333311
Q ss_pred ----HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCC
Q 010496 386 ----VLGSLLAACR--TKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 386 ----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+..++.++. ..+++++|+..|+++...+|.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2333344443 334566666666655555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-09 Score=96.56 Aligned_cols=208 Identities=8% Similarity=-0.075 Sum_probs=138.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---C---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---T---LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF-KPD-GVS 318 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~ 318 (509)
+.+...+..+...+.+.|++++|...|+++.+. + ...+..+..++...|++++|+..|++.++... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345666777777788888888888888877632 2 45667777777888888888888888777522 112 345
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 010496 319 FTGALTACSH--------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSL 390 (509)
Q Consensus 319 ~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 390 (509)
+..+..++.. .|++++|+..|+++.+...- +......+.......+.. ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 5566666666 77788888888877753321 222222211111000000 1124667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCcccE
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAV----------GKWDGAGKIRRTMKGRGIQKKPGLSS 457 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (509)
...+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...|+++.+...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 7889999999999999999999999854 4788999999877 899999999999987531
Q ss_pred EEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHc
Q 010496 458 IEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLC 494 (509)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 494 (509)
.++........+..+...+.+.
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHh
Confidence 1445556666666666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=98.64 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=91.0
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C-
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQIS------GVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQ------D- 245 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 245 (509)
..++..+...|...|++++|+..++++... +-.| ...++..+..++...|++++|...++++++. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 556777778888888888888888777653 1122 3456677777788888888888888777654 1
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------C---hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--------T---LVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
.+....++..+..+|...|++++|...|+++.+. + ..++..+...+...|++++|...++++.+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334566777788888888888888877766421 2 34567777778888888888888877765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-09 Score=94.27 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=146.4
Q ss_pred HHhCCCHHHHHHHHhcCCCCC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVRD-AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
..-.|.+..++.-...+...+ ...-.-+.++|...|++.... .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 445788888877666654433 223334557777777776421 1233333444433333 222 5666
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 312 (509)
+++.++.+ +++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666655 445555567778888888888888888876432 3456667777788888888888888888764
Q ss_pred CC-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC--
Q 010496 313 KP-----DGVSFTGALTAC--SHAG--LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM-- 380 (509)
Q Consensus 313 ~p-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 380 (509)
.| +..+...+..++ ...| ++..|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 55 345555555552 2223 778888888887632 244222233344677778888888777654 21
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 381 --------KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 381 --------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.| +..++..++......|+ +|.++++++.+..|+++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 44566566655555666 777888888888777653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-09 Score=92.16 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=141.8
Q ss_pred HhcCCchHHHHHHHhcCCCChH-HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010496 129 AKFGRMDLATVVFDAMRVKSSF-TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQ 207 (509)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 207 (509)
.-.|++..++.-...+...+.. .-..+..+|...|+++.. ....+....+..+...+ ..+ |+..|++..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~ 93 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQFL-DTK----NIEELENLL 93 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTT
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHH
Confidence 3467777777765555433222 222344666666665531 11222333333333332 222 667777776
Q ss_pred HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC------
Q 010496 208 ISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT------ 280 (509)
Q Consensus 208 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 280 (509)
..+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++.++.+.|+.+.|.+.+++|.+.+
T Consensus 94 ~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 94 KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 654 45555556777777778888888888887766652 2456677777888888888888888887776332
Q ss_pred -hhhHHHHHHHH--Hh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C----
Q 010496 281 -LVSWNSIIVGF--AV--NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY----R---- 347 (509)
Q Consensus 281 -~~~~~~l~~~~--~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~---- 347 (509)
..+...++.++ .. .+++.+|..+|+++... .|+..+-..++.++.+.|++++|...++.+.+.. +
T Consensus 173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 34444455442 22 33788888888887654 4553333444447777888888888887665321 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE 384 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 384 (509)
-+.+..+...+|......|+ +|.++++++ ...|+.
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 12345566455555555565 667777776 345543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-09 Score=95.66 Aligned_cols=202 Identities=13% Similarity=0.063 Sum_probs=145.8
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---hhh
Q 010496 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN---VKVCNTLIDLYSRCGCIEFARQVFQRMHK--R-T---LVS 283 (509)
Q Consensus 213 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~ 283 (509)
.+...+..+...+.+.|++++|...|+++++.. |.+ ..++..+..+|.+.|++++|...|+++.+ | + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677788888999999999999999999875 444 67889999999999999999999999874 2 2 346
Q ss_pred HHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHH
Q 010496 284 WNSIIVGFAV--------NGFVGEALEYFNSMQKEGFKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH 354 (509)
Q Consensus 284 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 354 (509)
+..+..++.. .|++++|+..|+++++. .|+. .....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999986 3432 221111 111111100 0122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTK----------GDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556777888888999888888876 33343 34677777777765 8999999999999999998764
Q ss_pred h---HHHHHHHHHHcCCchH
Q 010496 420 N---YVLLANMYAAVGKWDG 436 (509)
Q Consensus 420 ~---~~~l~~~~~~~g~~~~ 436 (509)
. ...+..++.+.+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 3 4445555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-09 Score=90.48 Aligned_cols=186 Identities=11% Similarity=0.014 Sum_probs=122.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCH-HHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK-PDG-VSFT 320 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~ 320 (509)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++++.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677788888888888888888763 32 246777788888888888888888888875322 111 2344
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 010496 321 GALTACSH------------------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKP 382 (509)
Q Consensus 321 ~li~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 382 (509)
.+..++.. .|++++|...|+++.+.. +-+...+........ .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HHHHH----------
Confidence 44444443 356666666666666322 112222211111000 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
......+...+...|++++|...|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113456778899999999999999999999865 568999999999999999999999998876443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-09 Score=83.87 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=76.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM-KPNEVVLGSLLAACRTK 397 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~ 397 (509)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++ .. ..+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444455555555555555555421 1223444555555555555555555555554 11 22445566666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|++++|.+.++++.+..|.+...+..++.++.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777766667777777777777777777777776653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-10 Score=113.68 Aligned_cols=167 Identities=9% Similarity=-0.049 Sum_probs=82.1
Q ss_pred HhcCCHHHHHHHHHhcc-----------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010496 261 SRCGCIEFARQVFQRMH-----------KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 329 (509)
...|++++|++.|+++. ..+...+..+..++...|++++|+..|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44455555555555543 1233445555555555555555555555555431 11334444455555555
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLM 407 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (509)
|++++|+..|+++.+.. +.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555211 1234445555555555555555 5555443 2233 3345555555555555555555555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHc
Q 010496 408 KYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
+++++.+|.+..++..++.++...
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HhhcccCcccHHHHHHHHHHHHcc
Confidence 555555555545555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=92.38 Aligned_cols=141 Identities=9% Similarity=0.015 Sum_probs=97.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (509)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|+..|+++.+. .+-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3444556677777777766543 232 234455667777777888888777777742 12356777777778888888
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 368 LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERL-MKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 368 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
+++|+..|++. .+.| +...+..+...+.+.|++++|.+. ++++++..|.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888877775 4555 466788888888888887766554 588888888888888888888777764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-08 Score=79.49 Aligned_cols=126 Identities=20% Similarity=0.298 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666677777777776666543 2345555566666666666666666666666554 344555555555555
Q ss_pred hcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 262 RCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
..|++++|.+.++++.+ .+...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55666555555555431 2334444455555555555555555555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-09 Score=92.89 Aligned_cols=176 Identities=11% Similarity=-0.017 Sum_probs=134.0
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 267 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
+.....+......+...+..+...+...|++++|+..|++..... +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344444555444455666777778888888888888888888762 235667778888888999999999999888732
Q ss_pred CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchH
Q 010496 347 RVSPRIEHY-GCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV--DSNY 421 (509)
Q Consensus 347 ~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~ 421 (509)
.|+.... ......+.+.++.++|...+++. ...| +...+..+...+...|++++|...+.++++.+|.+ ..++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3443322 22333466777788888888776 4445 57788899999999999999999999999999986 7789
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 422 VLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 422 ~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999887643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-08 Score=85.65 Aligned_cols=161 Identities=9% Similarity=-0.054 Sum_probs=113.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG----LIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|++..+ . -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHH
Confidence 45555566666666666677777777666654 44555556666665 5 77777777777763 2 245566
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 356 GCIVDLYSR----AGRLEDALNVVENM-PMKPN---EVVLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 356 ~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
..|...|.. .+++++|+++|++. ...|. ...+..|...|.. .+++++|...|+++.+. +.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 677777766 67888888888776 33442 6677778888877 77899999999998887 556668888
Q ss_pred HHHHHHHc-C-----CchHHHHHHHHHHhCCC
Q 010496 424 LANMYAAV-G-----KWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 424 l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 449 (509)
|+.+|... | ++++|.+.|++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888764 3 78899999988888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-08 Score=86.60 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=12.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 010496 186 LLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
....+...|++++|+..|++..+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555566666666655555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-08 Score=101.47 Aligned_cols=189 Identities=10% Similarity=-0.022 Sum_probs=148.8
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhC
Q 010496 226 ANVGTLGIGLWIHRYVL--------KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN 294 (509)
Q Consensus 226 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 294 (509)
...|++++|.+.+++++ +.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 443 66778899999999999999999999998873 4678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNV 374 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 374 (509)
|++++|+..|++.++.. +-+...+..+..++.+.|++++ +..|+++.+. .+.+...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999863 2256778888999999999999 9999999852 234678899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCc
Q 010496 375 VENM-PMKPN-EVVLGSLLAACRTKGD-----IILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 375 ~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 419 (509)
|+++ ...|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9997 67786 4577777777766554 23333444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-08 Score=86.17 Aligned_cols=186 Identities=10% Similarity=-0.022 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 197 (509)
+..+......+...|++++|+..|++....++........ ...... ........+.+..+|.+.|+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW--TNVDKN----------SEISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH--HHSCTT----------SHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH--hhhcch----------hhhhHHHHHHHHHHHHHCCCHH
Confidence 3344445556667777777777777665433321111110 000000 0002223344788888899999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--HHHHHHHHHh
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC--IEFARQVFQR 275 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~ 275 (509)
+|+..|++..+.. +-+...+..+..++...|++++|...|+++++.. |.+..++..+..+|...|+ ...+...++.
T Consensus 72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999998888863 3367778888888888899999999998888876 6677888888888766553 4455666666
Q ss_pred ccCCChh--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010496 276 MHKRTLV--SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSF 319 (509)
Q Consensus 276 ~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 319 (509)
...++.. .+.....++...|++++|+..|++.++. .|+....
T Consensus 150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 6655543 2333445555667777777777777764 5665433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-08 Score=92.03 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 010496 193 RGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (509)
.|++++|.+++++..+.. +.. .+...++++.|...|.++ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456777888777776531 111 011146667776666554 3456677777777777
Q ss_pred HHhccCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 010496 273 FQRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEG---FKPD--GVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 273 ~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
|.+..+- + ..+|+.+...|...|++++|+..|++.++.- -.+. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7665421 1 2467777888888888888888888766531 1122 3467777888888 999999999
Q ss_pred HHHhHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 010496 339 FDIMKKIYRVSP----RIEHYGCIVDLYSRAGRLEDALNVVENM-PM---KPN----EVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 339 ~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
|++..+...-.. ...++..+...|.+.|++++|+..+++. .+ .++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998874321111 1457888899999999999999999876 11 112 22566677778888999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHHcCCchHHHHH
Q 010496 407 MKYLVDLDPGVDSN-----YVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 407 ~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 440 (509)
+++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88874332 34445544 56776666553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.7e-10 Score=88.82 Aligned_cols=123 Identities=11% Similarity=-0.010 Sum_probs=102.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG 398 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 398 (509)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.|++. .+.| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556677899999999988873 334 3556677899999999999999999987 5566 5779999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH-HHHHHhC
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKI-RRTMKGR 447 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 447 (509)
++++|...|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5777664
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-06 Score=83.97 Aligned_cols=349 Identities=9% Similarity=-0.075 Sum_probs=180.6
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHh-CCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKL-GLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~ 125 (509)
.|...+..+=. |+++.+..+|++.... .|+...|..-+.-..+.. ...+....+|+..+.. |..+.+..+|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~-~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS-QKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45555555544 8899999999999984 578888887777655441 1335567777777665 66676688888888
Q ss_pred HHHH----hcCCchHHHHHHHhcCC-C--C-hHHHHHHHHHHHh-------------CCCHHHHHHHHhcCCC----CCH
Q 010496 126 DMYA----KFGRMDLATVVFDAMRV-K--S-SFTWNAMIDGYMR-------------RGDIESAVRMFDEMPV----RDA 180 (509)
Q Consensus 126 ~~~~----~~g~~~~A~~~~~~~~~-~--~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~----~~~ 180 (509)
..+. ..|+.+.+.++|++... | + ...|......-.. .+.+..|..+++.+.. .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 34678899999998854 2 1 1122222111000 0112222222222111 123
Q ss_pred hHHHHHHHHHHHcC--C-----hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHH
Q 010496 181 ISWTALLNGFVKRG--Y-----FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVC 253 (509)
Q Consensus 181 ~~~~~li~~~~~~~--~-----~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (509)
..|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.+.. |.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 34444443322211 0 234566777776642 445666666677777777888888888887776 4443333
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHhcc--C----------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 254 NTLIDLYSRCGCIEFA-RQVFQRMH--K----------RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a-~~~~~~~~--~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
.. |....+.++. ..+.+... . .....|...+....+.++.+.|..+|++. .. ...+...|.
T Consensus 250 ~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 250 LY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp HH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred HH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 22 2111111111 11111110 0 01123444444444555666666666666 21 112223332
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010496 321 GALTACSH-AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGD 399 (509)
Q Consensus 321 ~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 399 (509)
.....-.. .++.+.|..+|+...+..+ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 21111111 2246666666666664322 223334445555556666666666666652 234555555555555566
Q ss_pred HHHHHHHHHHHHh
Q 010496 400 IILAERLMKYLVD 412 (509)
Q Consensus 400 ~~~a~~~~~~~~~ 412 (509)
.+.+..+++++..
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-07 Score=79.78 Aligned_cols=228 Identities=11% Similarity=0.044 Sum_probs=161.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hhc---
Q 010496 193 RGYFEEALECFREMQISGVEPDYVTIISVLNACANVG--TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY----SRC--- 263 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 263 (509)
....++|+++++.++..+ +-+...|+.-..++...+ ++++++++++.++... |.+..+|+.-..++ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334468888888888853 224555677677777777 8899999998888876 66666666655555 445
Q ss_pred CCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 010496 264 GCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVG--EALEYFNSMQKEGFKPDGVSFTGALTACSHAGL------I 332 (509)
Q Consensus 264 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~------~ 332 (509)
+++++++++++++.+ ++..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888764 35567777777777788877 888888888886443 66666655555666665 7
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010496 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED-ALNVVENM-PM----KPNEVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
+++++.++++... .+-|...|+.+...+.+.|+... +.++..++ .. ..+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8888888888742 24467788888878878777544 45566665 22 23677888888888888888888888
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 010496 407 MKYLVD-LDPGVDSNYVLLA 425 (509)
Q Consensus 407 ~~~~~~-~~~~~~~~~~~l~ 425 (509)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 888886 6777655555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-07 Score=84.59 Aligned_cols=214 Identities=13% Similarity=0.084 Sum_probs=171.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHH----HhC---CC
Q 010496 229 GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG--CIEFARQVFQRMHK---RTLVSWNSIIVGF----AVN---GF 296 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 296 (509)
...++|++++..++..+ |-+..+|+.-..++...| ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34478999999999987 777888998888898888 99999999999874 3556676655555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC------h
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE--DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR------L 368 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 368 (509)
+++++.+++++.+.. +-+...|..-.-.+.+.|.++ +++.+++++.+. -+-+...|+.-...+.+.++ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999874 336777777666777788888 999999999953 24577788777777777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAACRTKGD-IILAERLMKYLVDLD---PGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
+++++.++++ ...| |...|+.+...+.+.|+ .+.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8899998876 4455 77899998888888887 444667888877766 6677889999999999999999999999
Q ss_pred HHHh
Q 010496 443 TMKG 446 (509)
Q Consensus 443 ~m~~ 446 (509)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=83.49 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=93.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhc
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL-YSRA 365 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 365 (509)
+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..++++.+.. |+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHHhh
Confidence 3444445555555555555544421 1133444455555555555555555555554221 122222111111 1111
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHcCCchHHHHHH
Q 010496 366 GRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV--DSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 366 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
+...+|...+++. ...| +...+..+...+...|++++|...++++++..|.. +..+..++.++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222345555554 3445 46788888888999999999999999999998874 458889999999999999999999
Q ss_pred HHHHh
Q 010496 442 RTMKG 446 (509)
Q Consensus 442 ~~m~~ 446 (509)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-08 Score=87.78 Aligned_cols=162 Identities=8% Similarity=-0.054 Sum_probs=106.4
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhH-HHHHHH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSW-NSIIVG 290 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~ 290 (509)
+...+..+...+...|++++|...|+++++.. |.+...+..+..++.+.|++++|...++++.. |+.... ......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44555666667777777777777777777765 56677777778888888888888888877764 332222 222223
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
+...++.++|+..+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666777777777777652 3355666677777777788888887777777432222225566777777777777777
Q ss_pred HHHHHHh
Q 010496 371 ALNVVEN 377 (509)
Q Consensus 371 A~~~~~~ 377 (509)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=101.66 Aligned_cols=160 Identities=9% Similarity=-0.036 Sum_probs=125.0
Q ss_pred cCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010496 263 CGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
.|++++|.+.|+++.+ .+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998874 356789999999999999999999999999863 335778888999999999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 010496 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTK---GDIILAERLMKYLVDLD 414 (509)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 414 (509)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999853 2346788999999999999999999999887 4445 577888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 010496 415 PGVDSNYVLLA 425 (509)
Q Consensus 415 ~~~~~~~~~l~ 425 (509)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888777766
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.8e-09 Score=94.68 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=149.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
..|++++|.+++++..+.. +.. .+...++++.|...|.++ ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 3577889999999887653 211 011158899998887764 5678889999999999998
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CC--CHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 307 MQKE----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV--SP--RIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 307 m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
..+. +-.+ -..+|..+..+|...|++++|+..+++..+...- .+ ...++..+...|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 1111 1347888888999999999999999988743211 12 14577888889988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHHcCCchHHHHHHHH
Q 010496 378 M-PMKP---N----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD------SNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 378 ~-~~~p---~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
. .+.| + ..++..+...+...|++++|+..++++++..+.+. ..+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788889999999999999999999999765533 2567788888899999999999999
Q ss_pred HH
Q 010496 444 MK 445 (509)
Q Consensus 444 m~ 445 (509)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-07 Score=81.78 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=105.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC----CHHHHHHHHHHHHHcCCCCcHhHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG----TLGIGLWIHRYVLKQDFKDNVKVCN 254 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 254 (509)
++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 66677777777777777777777777777654 45566666666666 5 7777777777777654 456666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010496 255 TLIDLYSR----CGCIEFARQVFQRMHKRT-----LVSWNSIIVGFAV----NGFVGEALEYFNSMQKEGFKPDGVSFTG 321 (509)
Q Consensus 255 ~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 321 (509)
.|..+|.. .+++++|++.|++..+.+ +..+..|...|.. .+++++|+..|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 67777766 677777777777776543 4667777777776 667777777777777651 23334555
Q ss_pred HHHHHhcc-C-----CHHHHHHHHHHhH
Q 010496 322 ALTACSHA-G-----LIEDGLRYFDIMK 343 (509)
Q Consensus 322 li~~~~~~-~-----~~~~a~~~~~~~~ 343 (509)
|...|... | +.++|...|++..
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 55555432 2 6777777777776
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-08 Score=82.31 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 010496 121 GTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMP 176 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 176 (509)
+..+...+.+.|++++|+..|++... .+...+..+...+.+.|++++|...|+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 34445555555555555555555542 134445555555555555555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=81.94 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=89.0
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 347 RVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 347 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++.+|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 3567778888889999999999999887 4555 57789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
++.+|.+.|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-07 Score=81.77 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=32.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
+...+.+.|++++|+..|+++.+...-.|. ...+..+..+|.+.|++++|.+.++.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 344556666666666666666643221111 244556666666666666666666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.1e-08 Score=97.04 Aligned_cols=147 Identities=11% Similarity=-0.070 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYF 304 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 304 (509)
.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988875 66788899999999999999999999998764 35678888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHhC
Q 010496 305 NSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA---GRLEDALNVVENM 378 (509)
Q Consensus 305 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 378 (509)
++..+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998863 3356788888899999999999999999998532 34577888899999999 9999999999876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-07 Score=79.93 Aligned_cols=91 Identities=10% Similarity=-0.093 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 010496 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLG 232 (509)
Q Consensus 153 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 232 (509)
..+...+...|++++|...|+....++...+..+...+...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555566666666666666655566666666666666666666666666666543 334555666666666666666
Q ss_pred HHHHHHHHHHHc
Q 010496 233 IGLWIHRYVLKQ 244 (509)
Q Consensus 233 ~a~~~~~~~~~~ 244 (509)
+|...++++.+.
T Consensus 89 ~A~~~~~~al~~ 100 (213)
T 1hh8_A 89 LAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=6.6e-07 Score=81.13 Aligned_cols=160 Identities=8% Similarity=-0.060 Sum_probs=117.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGF-KPDGV----SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGC 357 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 357 (509)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|+..++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876421 22211 2334666677778899999999988842222223 336888
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 010496 358 IVDLYSRAGRLEDALNVVENMP-----M---KPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYV 422 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 422 (509)
+...|...|++++|+..++++- . .+. ..++..+...|...|++++|...++++++..+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999988887761 1 111 2378888999999999999999999998865332 34689
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHh
Q 010496 423 LLANMYAAVGK-WDGAGKIRRTMKG 446 (509)
Q Consensus 423 ~l~~~~~~~g~-~~~A~~~~~~m~~ 446 (509)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.7e-08 Score=82.31 Aligned_cols=125 Identities=14% Similarity=0.012 Sum_probs=89.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRT 396 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 396 (509)
+..+...+...|++++|...++++. .|+...+..+...|.+.|++++|++.+++. ...| +...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666677777777776553 345666777777777777777777777665 2233 45677777778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 397 KGDIILAERLMKYLVDLDPGVD----------------SNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|++++|.+.++++++..|.+. ..+..++.+|.+.|++++|.+.|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777766 678888888888888888888888877654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-08 Score=80.00 Aligned_cols=97 Identities=16% Similarity=0.049 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++.+|.++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777888888999999999999886 3445 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010496 429 AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~ 447 (509)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-07 Score=84.92 Aligned_cols=164 Identities=7% Similarity=-0.061 Sum_probs=117.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--HH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-----VSFTGALTACSHAGLIEDGLRYFDIMKKIYRV--SPR--IE 353 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 353 (509)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877765322111 12334555667788999999998888732111 111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CC
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM----PMKPN-----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG------VD 418 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 418 (509)
+|+.+...|...|++++|...++++ ...|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999888775 11222 258888899999999999999999998875432 13
Q ss_pred chHHHHHHHHHHcCCchHH-HHHHHHHHh
Q 010496 419 SNYVLLANMYAAVGKWDGA-GKIRRTMKG 446 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 446 (509)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4688999999999999999 777887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.9e-08 Score=75.47 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.+..+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444444455555555555555443 2223 3444555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 010496 432 GKWDGAGKIRRTMKG 446 (509)
Q Consensus 432 g~~~~A~~~~~~m~~ 446 (509)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-07 Score=73.97 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=92.7
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 010496 312 FKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLG 388 (509)
Q Consensus 312 ~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 388 (509)
+.|+. ..+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 45667778888899999999999988842 2346778888889999999999999998886 4445 577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
.+..++...|++++|.+.|+++++.+|.+..++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998887777654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=77.24 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAAC 394 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 394 (509)
..+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555666677778888888888877742 2335667777888888888888888888775 3334 567888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCchHHHHHHHHHHh
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANM--YAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 446 (509)
...|++++|...++++++..|.+...+..+..+ +.+.|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999887777544444 7888999999999987654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-06 Score=84.69 Aligned_cols=356 Identities=11% Similarity=-0.015 Sum_probs=215.3
Q ss_pred cCC-ChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-c
Q 010496 57 RSG-RIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR-M 134 (509)
Q Consensus 57 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 134 (509)
+.| ++..|..+|+++... -|. ++.+.+..+|+..+.. .|+ ...|..-+....+.++ .
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~----------------~~~e~~~~iferal~~--~ps-~~LW~~Y~~f~~~~~~~~ 64 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS----------------KDYRSLESLFGRCLKK--SYN-LDLWMLYIEYVRKVSQKK 64 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT----------------TCHHHHHHHHHHHSTT--CCC-HHHHHHHHHHHHHHC---
T ss_pred HcCcchHHHHHHHHHHHHH--CCC----------------CCHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHHHhCchH
Confidence 346 377888888888762 344 6688899999988885 365 8899988888877764 4
Q ss_pred hHHHHHHHhcC------CCChHHHHHHHHHHH----hCCCHHHHHHHHhcCCC-C--CH-hHHHHHHHHHH---------
Q 010496 135 DLATVVFDAMR------VKSSFTWNAMIDGYM----RRGDIESAVRMFDEMPV-R--DA-ISWTALLNGFV--------- 191 (509)
Q Consensus 135 ~~A~~~~~~~~------~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~--------- 191 (509)
+....+|+... ..+...|...+..+. ..++.+.+..+|+.... | +. ..|......-.
T Consensus 65 ~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 65 FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp -CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHH
Confidence 55667777654 236677877777654 24678889999987643 2 21 12221111100
Q ss_pred ----HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--CC-----HHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 192 ----KRGYFEEALECFREMQISGVEPDYVTIISVLNACANV--GT-----LGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 192 ----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+.+..|..+++.+...--..+...|...+..-... +- .+.+..+|++++... +.+...|...+..+
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYL 223 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 1122333444444443210001233454444433221 11 345778999988865 67788899999999
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHhc
Q 010496 261 SRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG---------FKP---DGVSFTGALTACSH 328 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------~~p---~~~~~~~li~~~~~ 328 (509)
.+.|+.+.|..+|++.... +......+ .|......++. ++.+...- ..+ ....|...+....+
T Consensus 224 ~~~~~~~~ar~i~erAi~~-P~~~~l~~-~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM-SDGMFLSL-YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSSHHHH-HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC-CCcHHHHH-HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999999986533 22211111 22222111121 22222110 001 12345566666667
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA-GRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
.+..+.|..+|+++ +..+ .+...|...+..-... ++.+.|..+|+.. ..-| +...+...+......|+.+.|..
T Consensus 299 ~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78899999999998 3322 3444554333333333 3699999999876 2123 34456667777788999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+|+++ +.....|...+..-...|+.+.+.+++++..+
T Consensus 376 l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99997 23445688888888888999999999988874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=72.47 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010496 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLA 392 (509)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 392 (509)
+...+..+...+...|++++|...++++.+ ..+.+...+..+...|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345566666677777777777777777763 22235666777777777777777777777665 3333 5667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
++...|++++|.+.++++++..|.+...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888899999999999888888887888888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-06 Score=79.21 Aligned_cols=61 Identities=7% Similarity=-0.111 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHHhH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKE----GFKPD-GVSFTGALTACSHAGL-IEDGLRYFDIMK 343 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~-~~~a~~~~~~~~ 343 (509)
+|..+...|...|++++|+..+++.++. +..+. ..++..+..++.+.|+ +++|...++++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444444455555555555554444321 11111 3445555555555553 455555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-07 Score=81.48 Aligned_cols=192 Identities=11% Similarity=-0.056 Sum_probs=114.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHHhccCC---------C----------
Q 010496 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTL-------IDLYSRCGCIEFARQVFQRMHKR---------T---------- 280 (509)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~---------~---------- 280 (509)
..++...|.+.|.++.+.. |-....|..+ ..++.+.++..+++..+++...- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4667777777777777765 5556666655 44454444445555554444321 1
Q ss_pred -----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--HH
Q 010496 281 -----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR--IE 353 (509)
Q Consensus 281 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 353 (509)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 112334555666777777777777766654 24333444444566777777777777775542 11 121 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENMP--MK-PN--EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLL 424 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 424 (509)
.+..+..++.+.|++++|++.|++.. .. |. .........++.+.|+.++|..+|+++...+|. +.++..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 56667777777777777777777662 11 43 235555666777788888888888888887776 4444444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-07 Score=71.84 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAA 393 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 393 (509)
...+..+...+...|+++.|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666667777788888888888887742 2335667777788888888888888888775 3334 46688888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
+...|++++|...++++++..|.++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988888999999998888753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-05 Score=71.86 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=151.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-C-
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC-G- 264 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 264 (509)
....+.+..++|+++++++...+ +-+...|+.--.++...| ++++++.+++.++... +.+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33444555678888888888853 334555666666666677 5888999999888876 67778888777777766 6
Q ss_pred CHHHHHHHHHhccCCCh---hhHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 010496 265 CIEFARQVFQRMHKRTL---VSWNSIIVGFAVNGFVG--------EALEYFNSMQKEGFKPDGVSFTGALTACSHAGL-- 331 (509)
Q Consensus 265 ~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-- 331 (509)
++++++++++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888899888886544 45555444555555555 888889988886433 66777777777777665
Q ss_pred -----HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC-----
Q 010496 332 -----IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL--------------------EDALNVVENM-PM----- 380 (509)
Q Consensus 332 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~----- 380 (509)
++++++.++++... .+-|...|+.+-..+.+.|+. ....++...+ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67888888887742 244677777777667666654 3334444433 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHH
Q 010496 381 --KPNEVVLGSLLAACRTKGDIILAERLMKYLV-DLDPGVDSNYV 422 (509)
Q Consensus 381 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~ 422 (509)
.+....+..|+..|...|+.++|.++++.+. +.+|.....|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2456677777777777777777888777775 34554333333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-07 Score=70.38 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM-KPNEVVLGSLLAA 393 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 393 (509)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666666777777777777777777742 2335666777777777788888888777765 22 2356677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888888778888877776544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=88.34 Aligned_cols=50 Identities=4% Similarity=-0.203 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHh
Q 010496 397 KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV-GKWDGAGKIRRTMKG 446 (509)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 446 (509)
.|++++|.+.++++++.+|.+......+...+.+. +.+++|.++|+++.+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57778888888888887776655555666666655 667788888877765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-07 Score=73.29 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888889999999988876 4445 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010496 429 AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~ 447 (509)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.8e-07 Score=80.31 Aligned_cols=163 Identities=8% Similarity=-0.079 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCC---Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--H
Q 010496 251 KVCNTLIDLYSRCGCIEFARQVFQRMHKR---TL------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGF---KPD--G 316 (509)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~ 316 (509)
..+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|+..+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777788888888877655421 11 2234455566777888888888888775321 122 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC-C------CCC-C
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKK---IYRVSPR--IEHYGCIVDLYSRAGRLEDALNVVENM-P------MKP-N 383 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p-~ 383 (509)
.+++.+...|...|++++|...++++.+ ..+..+. ..++..+...|.+.|++++|+..+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677788888888888888888888763 2221111 257788888888888988888888765 1 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 010496 384 EVVLGSLLAACRTKGDIILA-ERLMKYLVDL 413 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 413 (509)
..+|..+...+...|++++| ...+++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55788888888899999998 7778877653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=71.71 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++.+|.++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666677777888888888888775 3344 56788888888888888888888888888888888888888888888
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010496 430 AVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~ 447 (509)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888888764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-07 Score=84.51 Aligned_cols=128 Identities=14% Similarity=0.059 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-------------RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP- 382 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 382 (509)
.+..+...+.+.|++++|+..|+++.+.....+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444445555555555555555555553211100 1467888888999999999999998886 4445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA-GKIRRTMK 445 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 445 (509)
+...+..+..++...|++++|...|+++++..|.+..++..++.++.+.|++++| ...++.|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999998 45666664
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-07 Score=77.61 Aligned_cols=116 Identities=15% Similarity=0.044 Sum_probs=55.9
Q ss_pred hCCCHHHHHH---HHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHH
Q 010496 161 RRGDIESAVR---MFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS----GVEP-DYVTIISVLNACANVGTLG 232 (509)
Q Consensus 161 ~~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 232 (509)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++.... +..+ ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322224455556666666666666666666655441 1111 1234445555555666666
Q ss_pred HHHHHHHHHHHc----CCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 233 IGLWIHRYVLKQ----DFK--DNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 233 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
+|...+++..+. +.. ....++..+..++...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666655555443 101 11233445555555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-06 Score=74.48 Aligned_cols=179 Identities=6% Similarity=-0.122 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHH-------HHHHHhcCCchHHHHHHHhcCCC---------C-----------
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTAL-------LDMYAKFGRMDLATVVFDAMRVK---------S----------- 148 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~---------~----------- 148 (509)
++...|.+.|..+.+.. |+....|..+ ..++.+.++..+++..+..-... +
T Consensus 20 ~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 55555566665555553 4445555555 34444444444544444443321 1
Q ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHH
Q 010496 149 ----SFTWNAMIDGYMRRGDIESAVRMFDEMPVR--DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIIS 220 (509)
Q Consensus 149 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ 220 (509)
...+..+...+...|++++|.++|+.+... +......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 112334555666677777777777766533 21245555566677777777777776443321 111 224555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 221 VLNACANVGTLGIGLWIHRYVLKQDFKD--NVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666433212 22344455555666666666666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=70.75 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
.+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++.++.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455555555566666666655555532 2234445555555555555555555555555543 334444444445555
Q ss_pred hcCCHHHHHHHHHhc
Q 010496 262 RCGCIEFARQVFQRM 276 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~ 276 (509)
..|++++|...|+++
T Consensus 93 ~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 93 ALGKFRAALRDYETV 107 (166)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 555555554444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=78.64 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--HHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAA-CRTKGDI--ILA 403 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~a 403 (509)
.|++++|...+++..+. .+.+...+..+...|...|++++|...+++. ...| +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44455555555554421 1223444555555555555555555555544 2222 34445555555 4455555 666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...++++++..|.++..+..++.+|...|++++|...++++.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666666665556666666666666666666666665554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-06 Score=75.43 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=157.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccCC---ChhhHHHHHHHHHhC-C-ChHH
Q 010496 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-CIEFARQVFQRMHKR---TLVSWNSIIVGFAVN-G-FVGE 299 (509)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~ 299 (509)
.+.+..++|++++.+++..+ |-+..+|+.-..++...| .+++++++++.+... +..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 33445578999999999987 777888888888888888 599999999998754 556777776666665 6 8899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC----
Q 010496 300 ALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE--------DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR---- 367 (509)
Q Consensus 300 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 367 (509)
++++++++.+... -|...|..-.-.+.+.|.++ ++++.++++.+. .+-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccc
Confidence 9999999998643 36666665555555555555 889999999852 24578888888888888776
Q ss_pred ---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CC
Q 010496 368 ---LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI--------------------ILAERLMKYLVDLD------PG 416 (509)
Q Consensus 368 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~ 416 (509)
++++++.++++ ...| |...|+.+-..+.+.|+. ....+....+.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 67888888776 4555 677888877777766653 33334444333332 33
Q ss_pred CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 417 VDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 417 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.++..|+..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4456889999999999999999999998643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-06 Score=71.42 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=12.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..+...+...|++++|...+++..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-07 Score=68.62 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANM 427 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 427 (509)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.+.++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777777888888888887775 3333 5667888888888999999999999999999888 88889999999
Q ss_pred HHHc-CCchHHHHHHHHHHhCCC
Q 010496 428 YAAV-GKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 428 ~~~~-g~~~~A~~~~~~m~~~~~ 449 (509)
|.+. |++++|.+.+++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998877653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-07 Score=82.99 Aligned_cols=189 Identities=9% Similarity=-0.035 Sum_probs=99.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHH
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGF 291 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 291 (509)
...+..+...+...|++++|...|+++++.. +.+...+..+..+|.+.|++++|...++++.+ .+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444455555556666666666666665554 44556666666666666666666666666553 2345566666666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
...|++++|+..|++..+.. |+. ..+...+....+ ...+.. +.... ....+.+......+... ..|++++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIE-ERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHH-HTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHH-HHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 66777777777776665531 111 011111111111 111111 11122 12333444443333322 2578888
Q ss_pred HHHHHHhC-CCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 010496 371 ALNVVENM-PMKPNEVVL-GSLLAACRTK-GDIILAERLMKYLVDL 413 (509)
Q Consensus 371 A~~~~~~~-~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~~ 413 (509)
|++.++.. ...|+.... ..+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88887765 566665433 3333334443 5678888888877663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=70.38 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+++++.. |.+...+..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444444555555555555444432 2233444444444444444444444444444443 333444444444444
Q ss_pred hcCCHHHHHHHHHhc
Q 010496 262 RCGCIEFARQVFQRM 276 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~ 276 (509)
..|++++|...|+++
T Consensus 116 ~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 116 RLKAPLKAKECFELV 130 (151)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 444444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-06 Score=64.58 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+..+...+...|++++|.++++++.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444455555555555555555554432 2233444444444445555555555555444433 33334444444444
Q ss_pred HhcCCHHHHHHHHHh
Q 010496 261 SRCGCIEFARQVFQR 275 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~ 275 (509)
...|++++|...|++
T Consensus 88 ~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 88 YKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHH
Confidence 444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=71.03 Aligned_cols=94 Identities=9% Similarity=-0.017 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-------NYVL 423 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~ 423 (509)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.++++++..|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777777777777777777765 4445 4667777888888888888888888888887766433 5667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77778888888888888887765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=69.27 Aligned_cols=98 Identities=10% Similarity=-0.035 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 350 PRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
.+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777778888888888888888775 3334 467888888888889999999999999999888888889999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010496 428 YAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~ 447 (509)
|...|++++|...|++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.8e-07 Score=73.13 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010496 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLA 392 (509)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 392 (509)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556666777777777777777777777422 235666777777777777777777777765 3344 4567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
++...|++++|...|+++++..|.+...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 777777777777777777777777666544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-07 Score=69.75 Aligned_cols=93 Identities=17% Similarity=-0.089 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.+|.+.|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 455667788899999999999887 4455 67788888899999999999999999999999999889999999999999
Q ss_pred CchHHHHHHHHHHhC
Q 010496 433 KWDGAGKIRRTMKGR 447 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~ 447 (509)
++++|+..+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-06 Score=65.69 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444555555555555555555554432 2234444444445555555555555555554443 33344444444444
Q ss_pred HhcCCHHHHHHHHHhc
Q 010496 261 SRCGCIEFARQVFQRM 276 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~ 276 (509)
...|++++|...|++.
T Consensus 91 ~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=9.6e-07 Score=74.80 Aligned_cols=96 Identities=13% Similarity=-0.006 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA 430 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (509)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|.+.|+++++..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888888888888888776 3344 567888899999999999999999999999999998899999999988
Q ss_pred cCCchHHH-HHHHHHHhCC
Q 010496 431 VGKWDGAG-KIRRTMKGRG 448 (509)
Q Consensus 431 ~g~~~~A~-~~~~~m~~~~ 448 (509)
.++.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88877776 5566655443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-06 Score=66.26 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=61.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45556666667777777777777777766542 2345566666666666777777777777666654 445556666666
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 010496 259 LYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~ 277 (509)
++...|++++|.+.|++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=71.89 Aligned_cols=127 Identities=10% Similarity=0.089 Sum_probs=99.2
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCCh--
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL-YSRAGRL-- 368 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 368 (509)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888998998888763 3466788888888999999999999999988532 3356778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
++|...++++ ...| +...+..+...+...|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999886 4445 567888889999999999999999999999999876543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=70.35 Aligned_cols=91 Identities=11% Similarity=-0.091 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhC
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN 294 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 294 (509)
+..+...+...|++++|...|++++... |.+...+..+..+|...|++++|+..|+++. ..+...+..+..++...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3334444444444444444444444443 3344444444444444444444444444433 12333444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 010496 295 GFVGEALEYFNSMQK 309 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~ 309 (509)
|++++|+..|++.++
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-06 Score=64.73 Aligned_cols=108 Identities=17% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACR 395 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 395 (509)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555556666666666555531 1223445555555555556666665555554 2223 3455666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
..|++++|.+.++++.+..|.++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666655555544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.7e-05 Score=69.74 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=131.1
Q ss_pred HcCChH-HHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 192 KRGYFE-EALECFREMQISGVEPD-YVTIISVLNACANVGT----------LGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 192 ~~~~~~-~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
+.|.++ +|++++..+... .|+ ...|+.--..+...+. +++++.++..++... |.+..+|+.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344443 667777777663 343 3333332222222221 566777777777665 6667777766666
Q ss_pred HHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 010496 260 YSRCG--CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGF-VGEALEYFNSMQKEGFKPDGVSFTGALTACSHA---- 329 (509)
Q Consensus 260 ~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 329 (509)
+...+ .+++++++++++.+ .+..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 66666 37777777777763 345566666666666666 47777877777776433 555555444444333
Q ss_pred ----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCH-HH
Q 010496 330 ----------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA-----------GRLEDALNVVENM-PMKPNE-VV 386 (509)
Q Consensus 330 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~-~~ 386 (509)
+.++++++.+...... .+-|...|+.+-..+.+. +.++++++.++++ ...||. ..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 3466777777777642 233566666554444444 2355666666665 445543 22
Q ss_pred HHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 387 LGSLLA---ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 387 ~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+..++. .....|..+++...+.++++++|....-|..+...+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 222221 112346677777778888777777655566555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=65.73 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778888999999999999999987 3344 67788999999999999999999999999999999899999999999
Q ss_pred HcCCchHHHHHHHHHHhCC
Q 010496 430 AVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~ 448 (509)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=68.40 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
...+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555666666666665554 44444 3455555566666666666666666666666665556666666
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010496 427 MYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~ 446 (509)
+|...|++++|...|++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-06 Score=69.34 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
..|..+...+...|++++|+..|++.++.. +-+...+..+..++.+.|++++|+..++++.+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345555666666666666666666666542 2245555556666666666666666666666321 2235556666666
Q ss_pred HHhcCChHHHHHHHHhC
Q 010496 362 YSRAGRLEDALNVVENM 378 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~ 378 (509)
|...|++++|.+.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 66666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-06 Score=66.40 Aligned_cols=110 Identities=8% Similarity=-0.077 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAAC 394 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 394 (509)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777642 2335667777777777777777777777765 3344 466777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 010496 395 RTKGDIILAERLMKYLVDLD------PGVDSNYVLLANMY 428 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~ 428 (509)
...|++++|...++++++.. |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888887 66555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=77.45 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPD----------------YVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
...+..+...+.+.|++++|+..|++..... |+ ...|..+..++.+.|++++|...++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666666666665542 22 24444555555555555555555555555
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 300 (509)
.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+..++...|+.++|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 43 34444555555555555555555555544431 2333444444444444444444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=6.9e-07 Score=75.72 Aligned_cols=114 Identities=18% Similarity=0.052 Sum_probs=54.8
Q ss_pred hCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHH
Q 010496 161 RRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDY----------------VTIISV 221 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l 221 (509)
..|+++++.+.++.-... ....+..+...+...|++++|+..|++..... +.+. ..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHH
Confidence 344444444444432211 23345556666666677777777766666532 1111 344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
..++...|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555555555555555555555543 344445555555555555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-06 Score=65.99 Aligned_cols=111 Identities=11% Similarity=-0.053 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 010496 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLG 388 (509)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 388 (509)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666677777777777777777762 2344 566677777777888888888777765 3334 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
.+..++...|++++|...++++++..|.++..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888899999999999999998888776666655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=68.41 Aligned_cols=105 Identities=14% Similarity=-0.017 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAAC 394 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 394 (509)
..+..+...+.+.|++++|...|+++.+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555666777888888888888888742 2345677778888888888888888888776 3344 456777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
...|++++|.+.|+++++..|.++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999988877655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=69.25 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577778888888899999999999998888888888888999999999999999988888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.4e-06 Score=64.31 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=42.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---C-------hhhHHHHHH
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---T-------LVSWNSIIV 289 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-------~~~~~~l~~ 289 (509)
.+...+.+.|++++|+..|+++++.. |.+..+|..+..+|...|++++|++.|++..+- + ..+|..+..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 33444444444444444444444443 333444444444444445544444444443311 0 123444555
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 010496 290 GFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~ 309 (509)
++...|++++|++.|++.+.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55566666666666666555
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=69.34 Aligned_cols=63 Identities=10% Similarity=-0.086 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDL-------DPGVDSNY----VLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..|..+..++.+.|++++|+..++++++. +|++...| ...+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888888899999999999999999998 99988888 99999999999999999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.5e-06 Score=80.71 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|...|+++++..|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888899999999999998886 4444 57789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHH-HHHHHHhC
Q 010496 430 AVGKWDGAGK-IRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~-~~~~m~~~ 447 (509)
+.|++++|.+ .++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999988764 55555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=8e-06 Score=78.47 Aligned_cols=118 Identities=7% Similarity=-0.060 Sum_probs=59.1
Q ss_pred ccCCHHHHHHHHHHhHHh---cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHH
Q 010496 328 HAGLIEDGLRYFDIMKKI---YRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-----P--MKPN-EVVLGSLLAACR 395 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~ 395 (509)
..|+++.|..+++..... .+..+ -..++..+...|...|++++|..+++++ + .++. ..++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555555555544321 11111 1334555555666666666666555543 1 1121 235555566666
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---CC----chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPG---VD----SNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~---~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
..|++++|..++++++...+. ++ ..+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666666666666665553221 11 134455555556666666666555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=84.06 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=94.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 400 (509)
...+.+.|++++|+..++++.+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778888888888888843 2335778888888999999999999988876 4455 567889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCchHHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANM--YAAVGKWDGAGKIRRT 443 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 443 (509)
++|.+.++++++..|.+...+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999988888888888 8889999999999884
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0002 Score=64.85 Aligned_cols=218 Identities=11% Similarity=0.034 Sum_probs=156.5
Q ss_pred HccCCH-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHhccC---CChhhHHHHHHHH
Q 010496 226 ANVGTL-GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC----------IEFARQVFQRMHK---RTLVSWNSIIVGF 291 (509)
Q Consensus 226 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~l~~~~ 291 (509)
.+.|.+ ++|+.++..++..+ |-+..+|+.--.++...+. +++++.+++.+.. .+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345554 58899999999876 6666777665555544443 6788888888763 4667788777777
Q ss_pred HhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc---
Q 010496 292 AVNG--FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL-IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA--- 365 (509)
Q Consensus 292 ~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 365 (509)
...+ .+++++.+++++.+.... |...|+.-..++...|. +++++..+.++.+. .+-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 7777 489999999999997433 66777766666677787 68999999999953 245677777766666554
Q ss_pred -----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCchH
Q 010496 366 -----------GRLEDALNVVENM-PMKP-NEVVLGSLLAACRTK-----------GDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 366 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
+.++++++.+... ...| |...|+.+-..+... +.++++++.++++++..|++.-.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4577888888776 4455 667777666655554 468999999999999999874444
Q ss_pred HHHHHHH---HHcCCchHHHHHHHHHHhC
Q 010496 422 VLLANMY---AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 422 ~~l~~~~---~~~g~~~~A~~~~~~m~~~ 447 (509)
..++... ...|..+++...+.++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4443322 2457788899999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=66.55 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=53.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKPN-E---VVLGSLLAACRTKGDIILAERLMKYLVDLDPGV---DSNYVLLANMYA 429 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 429 (509)
+...+...|++++|...++++ ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455555666665555554 22222 1 355555666666666666666666666666665 445666666666
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010496 430 AVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~ 447 (509)
+.|++++|...|+++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.2e-06 Score=65.24 Aligned_cols=101 Identities=9% Similarity=-0.109 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010496 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLL 391 (509)
Q Consensus 314 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 391 (509)
.+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34566667777777777777777777777742 2334667777777777888888887777765 3334 466778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.++...|++++|...++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888887766
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-05 Score=73.78 Aligned_cols=192 Identities=7% Similarity=-0.040 Sum_probs=110.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-Cc
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDY----------------VTIISVLNACANVGTLGIGLWIHRYVLKQDFK-DN 249 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 249 (509)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+++.++.+.--. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677888888898888888775322111 12556677777777777777777766543101 11
Q ss_pred H----hHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CC--
Q 010496 250 V----KVCNTLIDLYSRCGCIEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE--GF-- 312 (509)
Q Consensus 250 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~-- 312 (509)
. .+.+.+...+...|+++.|..+++.... . -..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2233334444455677777776665531 1 1235566666777777777777777766542 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 313 KPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYR---VSPR--IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 313 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
.+. ...+..++..|...|++++|..++++...... .++. ...+..+...+...|++++|...+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 23555666667777777777777766553211 1111 233445555566667777776666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.6e-06 Score=61.73 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD--NVKVCNTLIDL 259 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 259 (509)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +. +..++..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33344444444444444444444444432 2233334444444444444444444444444432 22 33334444444
Q ss_pred HHhc-CCHHHHHHHHHh
Q 010496 260 YSRC-GCIEFARQVFQR 275 (509)
Q Consensus 260 ~~~~-g~~~~a~~~~~~ 275 (509)
+... |++++|.+.+++
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HTTCSSCSHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 4444 444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=65.26 Aligned_cols=107 Identities=7% Similarity=-0.002 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM----KPN----EVVLGS 389 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 389 (509)
+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|...+++. .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555431 1223444455555555555555555555443 11 112 445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+..++...|++++|.+.++++.+..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66777777777777777777777666 344444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-06 Score=64.97 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV-------DSNYV 422 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~ 422 (509)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778888999999999999999887 3334 67788999999999999999999999999987765 66799
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 423 LLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 423 ~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.++.+|.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=9e-06 Score=62.40 Aligned_cols=93 Identities=12% Similarity=-0.070 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. |.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344555566666666666666665542 2245555555556666666666666666666554 4445555556666666
Q ss_pred cCCHHHHHHHHHhcc
Q 010496 263 CGCIEFARQVFQRMH 277 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~ 277 (509)
.|++++|...|+++.
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666655544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.7e-06 Score=68.05 Aligned_cols=128 Identities=16% Similarity=0.028 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-P---MKPN----EVV 386 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~ 386 (509)
+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. . ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444455555555555444321110011 124445555555566666665555543 0 0111 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPG------VDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+..+...+...|++++|.+.++++++..+. ....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666677777788888888888777764321 123577788888888888888888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-05 Score=77.45 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
..+.+.|++++|.+.|+++.+ .+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344455556666665555432 234455555555555555555555555555542 1234455555555555555555
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDL--YSRAGRLEDALNVVE 376 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 376 (509)
|...++++.+...- +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555532211 12223333322 445555555555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=76.84 Aligned_cols=124 Identities=8% Similarity=0.031 Sum_probs=99.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--CC---C-CHHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYR--VS---P-RIEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPN-EVVLG 388 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 388 (509)
.+...|++++|+.++++..+... +. | ...+++.|...|...|++++|..++++. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988764322 11 2 2567889999999999999999988775 23454 34889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 389 SLLAACRTKGDIILAERLMKYLVD-----LDPGVDSN---YVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|...|...|++++|+.+++++++ .||++|.+ ...+..++...+++++|..+|.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 57776654 5678888999999999999999998743
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=67.14 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=46.6
Q ss_pred CChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010496 366 GRLEDALNVVENM-PM---KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 366 g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
|++++|+..|++. .. .| +...+..+..++...|++++|...++++++..|.++.++..++.+|.+.|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555544 22 13 2335555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHh
Q 010496 441 RRTMKG 446 (509)
Q Consensus 441 ~~~m~~ 446 (509)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-05 Score=61.28 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACR 395 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~ 395 (509)
+...+...|++++|...|+.+.+.....+. ...+..+..++.+.|++++|...+++. ...|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444556667777777777776642211111 145666667777777777777777665 23333 456777777888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
..|++++|...++++++..|+++.....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 8888888888888888888876544333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-06 Score=78.55 Aligned_cols=148 Identities=11% Similarity=-0.045 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
...+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345677777788888999999999888774 444332 22333444433222 1 136788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCchHH
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY-AAVGKWDGA 437 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 437 (509)
+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|...|+++++..|.++.++..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 4445 5778889999999999999999999999999999888888888774 445677888
Q ss_pred HHHHHHHHhCC
Q 010496 438 GKIRRTMKGRG 448 (509)
Q Consensus 438 ~~~~~~m~~~~ 448 (509)
..+|++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888886543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=75.17 Aligned_cols=137 Identities=11% Similarity=-0.010 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVD 360 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~ 360 (509)
..+..+...+.+.|++++|+..|++.++. .+... .... .+... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 34566666667777777777777666552 01000 0000 01111 1122 4567888899
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 438 (509)
+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|...|+++++..|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 5566 56788999999999999999999999999999999889999999998888887776
Q ss_pred HH
Q 010496 439 KI 440 (509)
Q Consensus 439 ~~ 440 (509)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-05 Score=64.27 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=54.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-------PMKP-NEV 385 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 385 (509)
++..+...+...|++++|...+++..+......+ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555556666666555554421111111 334555556666666666666666554 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
.+..+...+...|++++|.+.++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777788888888888888887764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.1e-06 Score=67.16 Aligned_cols=76 Identities=20% Similarity=0.132 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD-SNYVLLANM 427 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 427 (509)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++..|.++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467888888899999999999988876 4455 577888999999999999999999999999999876 444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00017 Score=71.42 Aligned_cols=137 Identities=10% Similarity=-0.010 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHH
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG--LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG-RLEDALN 373 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~ 373 (509)
++++++.++++.+...+ +..+|..-..++.+.+ +++++...++++.+. -+-+..+|+.-...+.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 67777777777775322 5556666555666667 668888888888742 2345667776666667777 7788888
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 374 VVENM-PMKP-NEVVLGSLLAACRTK--------------GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 374 ~~~~~-~~~p-~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
.++++ ...| |...|+.....+... +.++++.+.+.+++..+|.+..+|..+...+.+.++.++
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 87776 4555 566777766666553 568999999999999999999999999999999888555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-06 Score=63.64 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYR--VSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
.|++++|+..|+++.+ .+ .+.+...+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777773 11 1224566777777888888888888888776 3344 4667778888888888889998
Q ss_pred HHHHHHHhcCCCCCch
Q 010496 405 RLMKYLVDLDPGVDSN 420 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~ 420 (509)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888876554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-05 Score=73.13 Aligned_cols=152 Identities=9% Similarity=-0.040 Sum_probs=83.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 329 (509)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45678888999999999999999998764322211 1223334444433221 13677788889999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-VVLGSLLAA-CRTKGDIILAERL 406 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~ 406 (509)
|++++|+..++++.+. .+.+...|..+..+|...|++++|...|++. .+.|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 2346788899999999999999999999887 566653 355555444 2345677888889
Q ss_pred HHHHHhcCCCCC
Q 010496 407 MKYLVDLDPGVD 418 (509)
Q Consensus 407 ~~~~~~~~~~~~ 418 (509)
|+++....|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-06 Score=64.04 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYV 422 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 422 (509)
+...+..+...+.+.|++++|++.+++. ...| +...+..+..++...|++++|.+.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456777778888888888888888776 3344 56788888889999999999999999999999987 56677
Q ss_pred HHHHHHHHcCCchHHHHHHHH
Q 010496 423 LLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 423 ~l~~~~~~~g~~~~A~~~~~~ 443 (509)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-05 Score=57.17 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999999999999999999999999999999999988764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-05 Score=61.33 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=67.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-----C-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSP-----R-----IEHYGCIVDLYSRAGRLEDALNVVENM-PM-------KPN 383 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~p~ 383 (509)
....+.+.|++++|+..|++..+...-.| + ...|..+..++.+.|++++|+..+++. .+ .|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 33444455555555555555553211100 1 226677777777777777777766654 34 786
Q ss_pred H-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 384 E-VVL----GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 384 ~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
. ..| .....++...|++++|+..|++++++.|.+...+.-
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4 477 888999999999999999999999999887655433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-05 Score=70.09 Aligned_cols=91 Identities=5% Similarity=-0.038 Sum_probs=64.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667777778888888888888888877643 3356677777777888888888888888877765 456666777777
Q ss_pred HHHhcCCHHHHHH
Q 010496 259 LYSRCGCIEFARQ 271 (509)
Q Consensus 259 ~~~~~g~~~~a~~ 271 (509)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0001 Score=71.12 Aligned_cols=119 Identities=11% Similarity=-0.052 Sum_probs=68.2
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPD----------------YVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
...|..+...+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 446667777777888888888888877764 222 24555555555666666666666666655
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
.. +.+...|..+..+|...|++++|+..|+++.+. +...+..+..++...++.+++.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 444555555555555555555555555554432 2334444555555545444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=59.02 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=61.9
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 371 ALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 371 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|++.+++. ...| +...+..+...+...|++++|...++++++..|.+...|..++.+|...|++++|...|++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555554 4444 56678888888888999999999999999988888888889999999999999999999888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.2e-05 Score=53.55 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666677777777777777777665 3333 56677778888888888888888888888888888778888887776
Q ss_pred HcC
Q 010496 430 AVG 432 (509)
Q Consensus 430 ~~g 432 (509)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.3e-05 Score=63.41 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=63.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 364 RAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGD----------IILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|+...+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555554 3333 44555555555555544 67999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 010496 432 G-----------KWDGAGKIRRTMKGRG 448 (509)
Q Consensus 432 g-----------~~~~A~~~~~~m~~~~ 448 (509)
| ++++|++.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00066 Score=53.19 Aligned_cols=109 Identities=10% Similarity=-0.046 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 010496 195 YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFAR 270 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 270 (509)
++++|+++|++..+.| .|+.. +...|...+..++|.+.|++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566777777766665 33322 4555555556666777777666654 45556666666665 56666666
Q ss_pred HHHHhccC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 010496 271 QVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 271 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g 311 (509)
+.|++..+ .++..+..+...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66665543 344555555555555 556666666666655554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=68.00 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---h
Q 010496 359 VDLYSRAGRLEDALNVVENM-P-----MKPN----EVVLGSLLAACRTKGDIILAERLMKYLVD-----LDPGVDS---N 420 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~ 420 (509)
+..+.+.|++++|+.++++. . +.|+ ..+++.|+.+|...|++++|+.+++++++ .++.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999998888765 1 2232 34889999999999999999999999876 4566554 4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHH
Q 010496 421 YVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKL 493 (509)
Q Consensus 421 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 493 (509)
+..|+..|...|++++|..++++..+--.. .-|..||...++...+......|+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999988762110 1234499999988888887777653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00046 Score=54.10 Aligned_cols=90 Identities=12% Similarity=-0.057 Sum_probs=50.9
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH---
Q 010496 358 IVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA--- 430 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 430 (509)
|...|...+.+++|+++|++.-...+...+..|...|.. .+++++|.+.|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555544222344555555555555 55666666666666654 344556666666666
Q ss_pred -cCCchHHHHHHHHHHhCCC
Q 010496 431 -VGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 431 -~g~~~~A~~~~~~m~~~~~ 449 (509)
.+++++|.+.|++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6666677777766666553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00021 Score=68.98 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCC-CC
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK-------R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQK-----EGF-KP 314 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~-~p 314 (509)
+++.|..+|...|++++|..++++..+ + ...+++.|...|...|++++|+.++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444455555555555555444444321 1 112455555555555555555555554432 121 22
Q ss_pred CH-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 315 DG-VSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 315 ~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+. .+...+-.++...+.+++|+.+|.++++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2334455556667777777777777764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=54.45 Aligned_cols=66 Identities=12% Similarity=-0.040 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+...+..+...+...|++++|.+.++++++..|.++..+..++.+|.+.|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999998753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00058 Score=48.59 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+..++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4556667777777788888888887777653 3355666777777777788888888777777765 4556666666666
Q ss_pred HHhc
Q 010496 260 YSRC 263 (509)
Q Consensus 260 ~~~~ 263 (509)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0025 Score=62.99 Aligned_cols=170 Identities=13% Similarity=0.004 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGT----------LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG- 264 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 264 (509)
.++|++.++++...+ +-+...|+.--.++...|+ ++++.+.++.+++.. +.+..+|..-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 456677777776642 2234445444444444444 677777777777665 566666666666666666
Q ss_pred -CHHHHHHHHHhccC---CChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------
Q 010496 265 -CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG-FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA---------- 329 (509)
Q Consensus 265 -~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------- 329 (509)
+++++++.++++.+ .+..+|+....++.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 55777777777653 34456666666666666 677777777777665322 455555544444332
Q ss_pred ----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 330 ----GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 330 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
+.++++.+.+.++... .+-+...|..+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 4578888888888742 23367778877777777776444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00042 Score=54.21 Aligned_cols=91 Identities=14% Similarity=0.023 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 010496 382 PNEVVLGSLLAACRTKG---DIILAERLMKYLVDLD-P-GVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 456 (509)
++..+...+..++++++ ++++++.+++...+.+ | .+...+..|+.+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------
Confidence 56667777777777777 5667888888877776 5 24566777788888888888888888877664
Q ss_pred EEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccC
Q 010496 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVP 498 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p 498 (509)
.|.........+.+.+.|++.|...
T Consensus 101 -----------------eP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 101 -----------------EPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 4555566666666667777777543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00037 Score=50.12 Aligned_cols=68 Identities=12% Similarity=-0.013 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 382 PNEVVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
++...+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778888887765554 79999999999999999999999999999999999999999999988754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00027 Score=67.10 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=66.7
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHH
Q 010496 364 RAGRLEDALNVVENM---------PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVD-----LDPGVDS---NYVLLA 425 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~ 425 (509)
..|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+++++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888877664 12333 34889999999999999999999999877 4666554 488999
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010496 426 NMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00072 Score=50.86 Aligned_cols=76 Identities=17% Similarity=0.052 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 199 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
|++.|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444432 2234444455555555555555555555555543 334444555555555555555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00089 Score=52.97 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=41.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH----------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 192 KRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTL----------GIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
+.+++++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++.++.+ |.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445666666666666643 33555666565565555443 46666666666665 445566666666666
Q ss_pred hcC
Q 010496 262 RCG 264 (509)
Q Consensus 262 ~~g 264 (509)
..|
T Consensus 92 ~lg 94 (158)
T 1zu2_A 92 SFA 94 (158)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0014 Score=47.84 Aligned_cols=60 Identities=7% Similarity=-0.010 Sum_probs=26.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQ 308 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 308 (509)
+...+..+..+|...|++++|++.|+++.+ .+...|..+..+|...|++++|+..|++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444331 123344444444444444444444444433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=62.05 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=71.0
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 010496 328 HAGLIEDGLRYFDIMKKIYR--VSP---R-IEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPNE-VVLGSLL 391 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~--~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 391 (509)
..|++++|+.++++..+... +.| + ..+++.|...|...|++++|+.++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999988888764221 222 2 567888999999999999999988876 244543 4899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 010496 392 AACRTKGDIILAERLMKYLVD-----LDPGVDSN 420 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 420 (509)
..|...|++++|+.+++++++ .||++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999877 46665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0009 Score=48.64 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=29.6
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEV-VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
..+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|.+.|+++++.+|.+...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444455555555555443 2222 233 44444555555555555555555555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0047 Score=58.65 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=74.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYR--VSPR----IEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPN-EVV 386 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 386 (509)
+..+.+.|++++|+.++++..+... +.|+ ..+++.|...|...|++++|+.+++++ ...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445677899999999988874211 2222 567888899999999999999888775 23454 348
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVD-----LDPGVDSN 420 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 420 (509)
++.|...|...|++++|+.+++++++ .||++|.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 89999999999999999999999877 57776654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.017 Score=43.42 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=101.2
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
+.-.|..++..+++.+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467777778877777763 35556666666666666666666666666542222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010496 371 ALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 371 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
....+-.++ .+...+...+..+...|+-++-.+++..+....+.++.....++.+|.+.|+..+|.+++.+..++|+.
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 344556667788889999999999999987777777889999999999999999999999999999975
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.015 Score=52.98 Aligned_cols=137 Identities=10% Similarity=0.007 Sum_probs=65.0
Q ss_pred CChhhHHHHHHHHH--hCC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC--CHHHH---HHHHHHhHH
Q 010496 279 RTLVSWNSIIVGFA--VNG---FVGEALEYFNSMQKEGFKPD-GVSFTGALTACSH---AG--LIEDG---LRYFDIMKK 344 (509)
Q Consensus 279 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~~--~~~~a---~~~~~~~~~ 344 (509)
.+...|...+.+.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ ..... ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666555432 222 346788888888775 454 2333333333320 00 00000 111111110
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
....+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|+.++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0112334555555554455556666666666554 334555555555555556666666666666666665543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.29 Score=48.44 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSF----TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
.+.+.|...+....... ..+.... ..+.......+...++...+..... . ..+.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888876543 2233222 2222233344435556666666542 1 2333334445555567799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 371 ALNVVENMPMKP--NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 371 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
|...|+.|...+ ...-..-+..++...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999885432 233344456677788999999999988875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.055 Score=56.25 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=48.1
Q ss_pred HhCCCHHHHHH-HHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 010496 160 MRRGDIESAVR-MFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 160 ~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (509)
...+++++|.+ ++..++ +......++..+.+.|.++.|+++.+.-. .-.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHH
Confidence 34666666666 543333 01222555566666666666665442110 0012233455555555553
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
+. ..+...|..+.+.+.+.++++.|.+.|.++
T Consensus 676 ~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 676 TD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 22 124455666666666666666666555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.013 Score=53.31 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=43.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
.+..+|.++...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 355566666555555677777777777766653 5655555556666666777777777766662 24544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.04 Score=57.30 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHH
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALE 201 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 201 (509)
..++..+.+.|..+.|.++.+. . ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4455555556666666554421 1 111233445666666666665543 45566666666666666666666
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 202 CFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 202 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+|.++.. |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|.++|.+
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665532 22333444445555555555444444331 23333445555666665555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0047 Score=44.68 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIE-HYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
...+...|++++|...++++.+. .+.+.. .+..+..+|...|++++|.+.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666666666666666632 122344 5666666666666666666666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0055 Score=46.02 Aligned_cols=88 Identities=11% Similarity=-0.049 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 010496 382 PNEVVLGSLLAACRTKGDIIL---AERLMKYLVDLD-P-GVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 456 (509)
|+..+-..+.+++++.++... ++.+++...+.+ | ........|+.++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--------- 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------
Confidence 455555555666666555444 566666665554 3 13345566666677777777777777666553
Q ss_pred EEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcC
Q 010496 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCG 495 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g 495 (509)
+|.+.++...-..+.++|...|
T Consensus 104 -----------------eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 104 -----------------EPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHC-
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhcc
Confidence 4455555555555556666655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.85 E-value=4.9e-05 Score=70.52 Aligned_cols=237 Identities=13% Similarity=0.155 Sum_probs=156.9
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
+..|+.|..+..+.|+..+|++.|-+. -|...|..++.++.+. +.++.-...+...++..-+ +.+=+.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~--~~~edLv~yL~MaRk~~ke---~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS--GNWEELVKYLQMARKKARE---SYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTS--SCCTTHHHHHHTTSTTCCS---TTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcc---cccHHHH
Confidence 345777888888888888777665432 2566677888888777 7777777666655554322 3444678
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCC------------------------CCCH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMP------------------------VRDA 180 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~ 180 (509)
+-+|++.++..+-.+++. .++..-...+.+-|...|.++.|.-+|..+. ..++
T Consensus 123 i~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 888888888766443332 3454455667777778888888877777664 2277
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
.+|..+-.+|...+.+.-|.-+--.++- .|| ....++..|-..|-+++.+.+++.-+... .....+|+.|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 8899999999999888877665444442 222 23345566778888888888888777543 56777888888777
Q ss_pred HhcCCHHHHHHHHHhccCC-----------ChhhHHHHHHHHHhCCChHHHHH
Q 010496 261 SRCGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
++= ++++..+.++..-.+ ....|.-++-.|.+-..++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 764 455555555433221 34467777777777777775543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.042 Score=41.98 Aligned_cols=92 Identities=7% Similarity=-0.035 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 010496 381 KPNEVVLGSLLAACRTKGD---IILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456 (509)
Q Consensus 381 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 456 (509)
.|+..+--.+.+++.++.+ ..+++.+++.+....|. .......|+.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4666666667777777664 45677788888777665 3445777888888888888888888888774
Q ss_pred EEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccC
Q 010496 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVP 498 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p 498 (509)
.|.+.++...-+.+.++|...|...
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGliG 131 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLKG 131 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchhh
Confidence 5556666677777778888887653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.24 Score=43.31 Aligned_cols=79 Identities=9% Similarity=-0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHH
Q 010496 197 EEALECFREMQISGVEPD---YVTIISVLNACANV-----GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC-GCIE 267 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 267 (509)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.++|++.++.+-.-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444445555442 343 33455555555442 55555555555555544111244444445555442 5555
Q ss_pred HHHHHHHhcc
Q 010496 268 FARQVFQRMH 277 (509)
Q Consensus 268 ~a~~~~~~~~ 277 (509)
.+.+.+++..
T Consensus 258 ~a~~~L~kAL 267 (301)
T 3u64_A 258 GFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=42.01 Aligned_cols=73 Identities=22% Similarity=0.080 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-C--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-P--------MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
...+..+...+.+.|++..|..+++.. . -.+...++..|..++.+.|+++.|...++++++..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445566666666666666666554 0 1134567888888999999999999999999999998766544
Q ss_pred HH
Q 010496 423 LL 424 (509)
Q Consensus 423 ~l 424 (509)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.029 Score=40.03 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 349 SPRIEHYGCIVDLYSRAGR---LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
+.+...+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777777754444 68888888776 4555 4667777788888999999999999999988887
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.33 Score=38.90 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=47.2
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 010496 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRY 240 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (509)
+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+...++-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344455554444433 2344555555555555555555555554432 22233334444554444444444
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 241 VLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
....| . ++.....+...|+++++.++|.+..
T Consensus 86 A~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 86 AQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 43333 1 3333344445566666666555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.19 E-value=2.5e-05 Score=72.42 Aligned_cols=236 Identities=11% Similarity=0.103 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 151 TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 151 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
+|..+..+..+.+++.+|++.|- +..|+..|..+|....+.|.+++-+.++...++..-.|. .=+.|+-+|++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhCc
Confidence 34444555555554444444432 222344444555555555555555555544443322222 22244445555554
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc------------------------CCChhhHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH------------------------KRTLVSWNS 286 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~ 286 (509)
+.+.++++ -.||..-...+.+-|...|.++.|.-+|..+. ..++.||..
T Consensus 132 L~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 132 LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 43322222 12333333444444444444444444443332 136778988
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG 366 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 366 (509)
+-.+|...+.+.-|.-.--.++-. || ....++..|-..|.+++-+.+++.... .-......|+.|.-.|++-
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHHSS-
T ss_pred HHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhc-
Confidence 888999888887766554444422 22 122355667788888888888887761 2234677788887777765
Q ss_pred ChHHHHHHHHhC----CCC------CCHHHHHHHHHHHHhcCCHHHHHH
Q 010496 367 RLEDALNVVENM----PMK------PNEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 367 ~~~~A~~~~~~~----~~~------p~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
++++.++.++.. .+. -....|.-++..|....+++.|..
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 666666666554 111 134467777777877777776643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.023 Score=49.60 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=67.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHc-CCchH
Q 010496 368 LEDALNVVENM-PMKPN---EVVLGSLLAACRT-----KGDIILAERLMKYLVDLDPG-VDSNYVLLANMYAAV-GKWDG 436 (509)
Q Consensus 368 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~ 436 (509)
...|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++++++.|. +..++..++..+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666554 56676 4477777777877 48999999999999999997 488899999999885 99999
Q ss_pred HHHHHHHHHhCCCccCC
Q 010496 437 AGKIRRTMKGRGIQKKP 453 (509)
Q Consensus 437 A~~~~~~m~~~~~~~~~ 453 (509)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887655333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.03 Score=43.73 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=56.4
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 010496 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG---RLEDALNVVENM-PMK-P--NEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
..+.+.|.+..+ .+ .++..+...+..++++.+ +.++++.+++.. ... | +...+..|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555442 12 256666666666677766 445677666665 222 4 23455667778899999999999
Q ss_pred HHHHHHhcCCCCCch
Q 010496 406 LMKYLVDLDPGVDSN 420 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~ 420 (509)
.++.+++.+|++..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999987543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.038 Score=41.63 Aligned_cols=90 Identities=7% Similarity=-0.032 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcc
Q 010496 380 MKPNEVVLGSLLAACRTKGD---IILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGL 455 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 455 (509)
-.|+..+--.+.++++++.+ ..+++.+++.+.+.+|. ....+..|+.++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~-------- 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-------- 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--------
Confidence 34566666666667766654 44677777777776664 3456777888888888888888888877664
Q ss_pred cEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcC
Q 010496 456 SSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCG 495 (509)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g 495 (509)
.|.+..+...-..+.++|...|
T Consensus 108 ------------------eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 108 ------------------ERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.46 Score=38.07 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=79.1
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
-+....+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.+...++-
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 445667899999999998877 4678899999999999999999999998764 445666677788887777666
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRY 240 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (509)
+.....| -++....++.-.|+++++.++|.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665554 244555566677888888777643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.1 Score=38.06 Aligned_cols=67 Identities=12% Similarity=-0.018 Sum_probs=45.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISG------VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
+..-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34455667777778888888888887766531 12335566677777777777777777777777654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.2 Score=37.79 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=58.1
Q ss_pred hcCCchHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---------------------CCHhHHHHHH
Q 010496 130 KFGRMDLATVVFDAMRVK-SSFTWNAMIDGYMRRGDIESAVRMFDEMPV---------------------RDAISWTALL 187 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------~~~~~~~~li 187 (509)
-.|..++..++..+...+ +..-||.+|.-....-+-+-..++++.+.. .+...++..+
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~AL 98 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKAL 98 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence 346666666666665533 333444444443333333333333333321 1233344445
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDF 246 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (509)
......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 5555566666665555554332 255555555566666666666666666666655553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.37 Score=36.15 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 010496 332 IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED---ALNVVENM-PMK-P--NEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
...+.+.|..... .+ .++..+-..+..++.+...... ++.+++.+ ... | .......|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444455554442 12 2555666666667777665554 66666665 222 3 2224455666788999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 010496 405 RLMKYLVDLDPGVDSN 420 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~ 420 (509)
+.++.+++..|.+..+
T Consensus 95 ~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHH
Confidence 9999999999987654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.24 E-value=5.9 Score=41.02 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=14.3
Q ss_pred hHHHHHHHHcCCChhHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTR 70 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~ 70 (509)
|..+++...+.++.+.+.++|..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~ 255 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKK 255 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55556666666666666666665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.63 Score=35.93 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=40.1
Q ss_pred cCChHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 365 AGRLEDALNVVENM-P--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
.++.++|.++|+.+ . -+- ...|......-.++|+...|.+++.+++...|.+...+...+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 35666666666665 1 111 556666666677889999999999999888887654444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.12 Score=39.80 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=45.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
...++.++|.++|+.++.....-...|...+..-.++|+.+.|.+++.+.+..+.
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3447999999999999887444455688888888999999999999999888654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.45 E-value=4.1 Score=36.48 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=15.9
Q ss_pred chHHHHHHHHcCCChhHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTR 70 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~ 70 (509)
.|.++..-|.+.+++++|++++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345566667777777777776544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.35 E-value=4.1 Score=36.20 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHc---CChHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKR---GYFEEA 199 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A 199 (509)
++..+..+...|.+.|++.+|+..|-.-...+...+..++.-+... |...++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 4555566666666666666666655422222444554444444444 444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.19 E-value=3.8 Score=38.78 Aligned_cols=185 Identities=9% Similarity=0.028 Sum_probs=115.8
Q ss_pred cCChHHHHHHHHHHHHc-----CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH----HHhc
Q 010496 193 RGYFEEALECFREMQIS-----GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL----YSRC 263 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 263 (509)
.|+++.|++-+..+.+. +..........++..|...++++...+.+..+.+..-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788898887776543 234456667788999999999999888877666442122 2222333332 2223
Q ss_pred CC--HHHHHHHHHhccC---CC--h-----hhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 010496 264 GC--IEFARQVFQRMHK---RT--L-----VSWNSIIVGFAVNGFVGEALEYFNSMQKE--GFKPD---GVSFTGALTAC 326 (509)
Q Consensus 264 g~--~~~a~~~~~~~~~---~~--~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~ 326 (509)
.. .+.-..+.+.... .- . .....|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2223333333321 11 1 13356778888999999999999998753 22222 23566677788
Q ss_pred hccCCHHHHHHHHHHhHHh-cCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 327 SHAGLIEDGLRYFDIMKKI-YRV--SPR--IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
...+++..|..+++++... ... .|+ ...|...+..+...+++.+|.+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999999887421 111 222 334566777778888998887776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.19 Score=46.85 Aligned_cols=70 Identities=19% Similarity=0.083 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccCCcc
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG-----RGIQKKPGL 455 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 455 (509)
....++..+...|++.++...+..+...+|-+...+..++.+|.+.|+..+|++.|+++.+ .|+.|.+.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445667778889999999999999998888888899999999999999999999887754 488776653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.36 Score=48.79 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=48.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
...|...|+++-|+++.++++..-|..-.+|..|+.+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345677899999999999999999998889999999999999999999988877
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.82 E-value=10 Score=39.32 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHhCCCHHHHHHHHhcCCCC-C--HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHccCCHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVR-D--AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII--SVLNACANVGTLGI 233 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~ 233 (509)
+.-.|+-+....++..+... + ..-.-++.-++...|+.+.+..+++.+.... .|....-. .+.-+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHH
Confidence 34556655555555543211 2 2222233334445677777777766666531 22221111 22334566677666
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-CChhhHHHHHHH--HHhCCC-hHHHHHHHHHHHH
Q 010496 234 GLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-RTLVSWNSIIVG--FAVNGF-VGEALEYFNSMQK 309 (509)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~--~~~~~~-~~~A~~~~~~m~~ 309 (509)
..+++..+.... ..++.-...+.-+....|+.+.+.+++..+.+ .|..+......+ ....|. ..++++++..+..
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666776666532 22222222233333344555555555554432 233332222222 222332 2456666666654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.80 E-value=1.2 Score=31.57 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+.+.. ..+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence 566778888888888899999999999999999999999999999998655544 4567766643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.75 E-value=12 Score=37.82 Aligned_cols=81 Identities=6% Similarity=-0.086 Sum_probs=60.1
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC---------CHHHHHHHHHhcc------
Q 010496 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG---------CIEFARQVFQRMH------ 277 (509)
Q Consensus 213 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~------ 277 (509)
-+..-|..|.....+.+.+++|.+.|+..+.. ..+...+..|++.|.+.+ +.+..+...-++.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~Rw 688 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRY 688 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhc
Confidence 34556889999999999999999999999975 578899999999999877 6777666555443
Q ss_pred --CCChhhHHHHHHHHHhCC
Q 010496 278 --KRTLVSWNSIIVGFAVNG 295 (509)
Q Consensus 278 --~~~~~~~~~l~~~~~~~~ 295 (509)
+-.+.....+...+.+.|
T Consensus 689 Y~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 689 YNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TBCCCHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHHHHhC
Confidence 234444555555555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=12 Score=37.04 Aligned_cols=362 Identities=10% Similarity=0.027 Sum_probs=189.4
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc
Q 010496 55 HCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM 134 (509)
Q Consensus 55 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (509)
..+.|++..+..+...+...-+.|- ..|..+...+... ...++...+.+..-.|-....-..-+..+.+.+++
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~~~------~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLMNQ------PAVTVTNFVRANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGGGC------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcccC------CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCH
Confidence 4567888888888776654323222 2455555443221 12255555555533333234455566778888999
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHcCChHH--HHHHHHHHHHc
Q 010496 135 DLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEM---PVRDAISWTALLNGFVKRGYFEE--ALECFREMQIS 209 (509)
Q Consensus 135 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~--A~~~~~~m~~~ 209 (509)
...+..+.. ...+...-.....+....|+..+|......+ ....+..+..++..+.+.|.... ...-++.+...
T Consensus 89 ~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 89 RGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 988887766 4345666666777888889866555544332 12246677778888777665433 33334444443
Q ss_pred C-----------CCCCHhHH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh---HHHHHHHHHHhcCCHHHHHHHHH
Q 010496 210 G-----------VEPDYVTI-ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK---VCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 210 ~-----------~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
| +.++...+ ..++........+ .... .. ..++.. .+...+.-+.+ .+.+.|...+.
T Consensus 168 ~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~----~~-~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~ 238 (618)
T 1qsa_A 168 GNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFA----RT-TGATDFTRQMAAVAFASVAR-QDAENARLMIP 238 (618)
T ss_dssp TCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHH----HH-SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHH----hc-cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 3 11111111 1111111111111 1111 10 122221 22222333333 47889999997
Q ss_pred hccC---CChh----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 010496 275 RMHK---RTLV----SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347 (509)
Q Consensus 275 ~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 347 (509)
...+ -+.. .+..+...+...+...++...+...... ..+.....-.+....+.|+++.|...|+.|.. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~--~ 314 (618)
T 1qsa_A 239 SLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPM--E 314 (618)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT--T
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccc--c
Confidence 7642 1222 2223333333445356777777776554 33444444444555677999999999999873 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHH
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-----NYV 422 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~ 422 (509)
.........-+..++...|+.++|..+|..+.-..+ .|..+. ..+.|..-.. . .....+.... .-.
T Consensus 315 ~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~--fYg~lA--a~~Lg~~~~~-~----~~~~~~~~~~~~~~~~~~ 385 (618)
T 1qsa_A 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRG--FYPMVA--AQRIGEEYEL-K----IDKAPQNVDSALTQGPEM 385 (618)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--HHHHHH--HHHTTCCCCC-C----CCCCCSCCCCHHHHSHHH
T ss_pred ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC--hHHHHH--HHHcCCCCCC-C----CCCCChhHHhhhccChHH
Confidence 112344445567788899999999999998842222 233332 2233321000 0 0000011111 122
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010496 423 LLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 423 ~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.-+..+...|....|...+..+.+
T Consensus 386 ~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 386 ARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCChhhHHHHHHHHHh
Confidence 345567778888888877776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.04 E-value=13 Score=40.16 Aligned_cols=118 Identities=10% Similarity=0.023 Sum_probs=64.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------------------------ChhhHHHHHHHHHhCCChHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--------------------------TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
+......+..+|...|++++|.++|++.... -..-|..++..|.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455667777777777877777765410 00124556666666666666666
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 303 YFNSMQKEGFKPDG----VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 303 ~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
+-...++....-+. ..|..+.+++...|++++|...+-.+.. .. --......|+..++..|..+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~--~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP--LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS--SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH--HHHHHHHHHHHHHHhCCChh
Confidence 66555543211111 1355566666666777776666655542 11 22445555665555555443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.59 E-value=9.1 Score=34.25 Aligned_cols=181 Identities=10% Similarity=0.023 Sum_probs=110.5
Q ss_pred HHHHhcCCc---hHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010496 126 DMYAKFGRM---DLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALEC 202 (509)
Q Consensus 126 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 202 (509)
......|++ =+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 334556777 566654 55677778889999999988643 34456677777666555
Q ss_pred H----HHHHHcCCCCCHhHHHHHHHHHHccCCHH-HHHHHHHHHH----HcC--CCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 203 F----REMQISGVEPDYVTIISVLNACANVGTLG-IGLWIHRYVL----KQD--FKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 203 ~----~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
- +-+.+.++++|......++..+.....-+ .-..+.+.++ +.| ..-+......+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 55566678888888888887776655321 1122333333 333 33567888899999999999999998
Q ss_pred HHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 272 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|-.-.++....+..++.-+...+... .++...-..++. |.-.++...|..++....
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 884322222345544443333322211 122333333443 555678888888776655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.33 E-value=9.3 Score=33.92 Aligned_cols=182 Identities=11% Similarity=0.066 Sum_probs=112.4
Q ss_pred HHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHH---
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALEC--- 202 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~--- 202 (509)
......|++=+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 21 ~~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHH
Confidence 344556677677664 56677888899999999998753 34556777887766664
Q ss_pred -HHHHHHcCCCCCHhHHHHHHHHHHccCC-----HHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 203 -FREMQISGVEPDYVTIISVLNACANVGT-----LGIGLWIHRYVLKQD--FKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 203 -~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
++-..+.+++++......++..+..... .+-..+......+.| ...++..+..+...|.+.|++.+|...|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4555666788888888888877755332 122233333333433 22477889999999999999999998876
Q ss_pred hccCCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 275 RMHKRTLVSWNSIIVGFAVN---GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
.-...+...+..++.-+... |...++ +...-..++. |.-.|+...|..++....+
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 33322444444444333322 222221 1122222332 4456888888888887653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.32 E-value=6.8 Score=32.32 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG 163 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (509)
..+....+..+.+.|+.+....+.+.+..++..+-...+.++.+.+
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 3444444444444444333333333333333333333333333333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.10 E-value=9.8 Score=41.10 Aligned_cols=145 Identities=8% Similarity=0.047 Sum_probs=85.3
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------C--C
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS--------------------G--V 211 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------------~--~ 211 (509)
.++..+.+.+.++.|.++...... ++.....+..++...|++++|.++|++.-.. . .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 344555556666666655544433 3333344556666666666666666553110 0 0
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHhccCC--ChhhHH
Q 010496 212 EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV----KVCNTLIDLYSRCGCIEFARQVFQRMHKR--TLVSWN 285 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~ 285 (509)
..-..-|.-++..+.+.+.++.+.++-..+++...+.+. ..|..+.+.+...|++++|...+-.+... -.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 111234666777777788888888777776665322221 25677788888888888888887766532 234566
Q ss_pred HHHHHHHhCCChHH
Q 010496 286 SIIVGFAVNGFVGE 299 (509)
Q Consensus 286 ~l~~~~~~~~~~~~ 299 (509)
.++..+|..|..+.
T Consensus 976 ~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHCCHHH
T ss_pred HHHHHHHhCCChhh
Confidence 67777776666443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.78 E-value=3 Score=31.37 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.+.+.. ..+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHHH
Confidence 455677788888888899999999999999999999999999999998755443 5567776643
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.15 E-value=8.4 Score=31.73 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=22.4
Q ss_pred HhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCC
Q 010496 142 DAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 195 (509)
+.+..++...-...+..+.+.+..+....+.+.+..++...-...+.++.+.+.
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333334444444444444444443333333333334444444444444444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.14 E-value=2.9 Score=32.92 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 010496 358 IVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~ 378 (509)
+..+|.+.+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 445555555555555555555
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.77 E-value=15 Score=33.98 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHc-C-C--CCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhH---
Q 010496 216 VTIISVLNACANVGTLGIGLWIHRYVLKQ-D-F--KDNVKVCNTLIDLYSRCG-CIEFARQVFQRMHK---RTLVSW--- 284 (509)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~--~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~--- 284 (509)
.....|...|.+.|+.++..+++...... + + .........+++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777666654422 0 0 112234455666655532 23333333332221 111222
Q ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCCHHHH
Q 010496 285 ---NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-----VSFTGALTACSHAGLIEDGLRYFDIMKKIYR-VSPRIEHY 355 (509)
Q Consensus 285 ---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 355 (509)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+........ +.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14566677777777777777766653111121 2233444556666777777777766653221 11222211
Q ss_pred H----HHHHHHH-hcCChHHHHHHHHh
Q 010496 356 G----CIVDLYS-RAGRLEDALNVVEN 377 (509)
Q Consensus 356 ~----~li~~~~-~~g~~~~A~~~~~~ 377 (509)
. .-...+. ..++|..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1112234 56667766666644
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.73 E-value=4.8 Score=28.35 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 219 (509)
+..+...|++++|..+.+.+..||...|-+|.. .+.|..+++...+..+..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445778999999999999999889888876654 57888888888888888776 55554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.50 E-value=3.3 Score=32.62 Aligned_cols=69 Identities=6% Similarity=-0.052 Sum_probs=42.9
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCC-CCCCc-------ccHHHHHHhhcCCCccchhHHHHHHHHHHHh
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHG-TNPNH-------ITFITLLSGCADFPSQCLFLGAMIHGLVCKL 111 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 111 (509)
++-+...+-.-+..+...|.++.|+.+...+.... ..|+. .++..+..++... +++..|...+.+.++.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~--~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD--KEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHH
Confidence 33445566677888899999999998887765421 23443 1233444445555 8888888888886544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.43 E-value=5.1 Score=28.27 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=46.4
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 219 (509)
+..+...|++++|..+.+.+..||...|-+|.. .+.|..+++...+..+..+| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345778899999999999988888888876654 57788888888887887776 55544443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=4.4 Score=37.57 Aligned_cols=71 Identities=10% Similarity=-0.048 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHhHHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK-----QDFKDNVKVCN 254 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 254 (509)
...++..+...|++.+|+..+..+.... +-+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445667777888888888888777653 44677888888888888888888888877653 47777765543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=88.13 E-value=9.5 Score=31.09 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (509)
..+....+..+.+.|..+....+.+.+..++..+-...+.++.+.++
T Consensus 28 ~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 28 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 44444444444444443333334444433444333333344444333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.66 E-value=4 Score=28.94 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444555555555566666666666666666666666666666655442 22234455444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.43 E-value=3.8 Score=30.88 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 350 PRIEHYGCIVDLYSRAGRL---EDALNVVENM-PMKP-N-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
|+..+--.+..++.+..+. .+++.+++++ +..| . ...+-.|.-++.+.|++++|.+..+.+++..|.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4444444445555555443 2445555444 2223 1 234445555677777777777777777777777643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.41 E-value=12 Score=30.45 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (509)
..+....+.++.+.|+.+....+.+.+..++..+-...+.++.+.++
T Consensus 59 ~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 59 AWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333444444444443333333333333344333334444444443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.88 E-value=7.2 Score=31.84 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcc
Q 010496 380 MKPNEVVLGSLLAACR--TKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGL 455 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 455 (509)
.+.|..-...-+.-.- ..++..++..+|..|...+.. ....|...+..+...|++++|.++|+.=++.+-+|
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P---- 148 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP---- 148 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS----
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----
Confidence 5556654433333222 245577888999988887665 34458888888889999999999998887776544
Q ss_pred cEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCc
Q 010496 456 SSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGY 496 (509)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 496 (509)
...+......+...|.+.++
T Consensus 149 ---------------------~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 149 ---------------------YNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCC
Confidence 23455566667777777777
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.41 E-value=11 Score=28.88 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 349 SPRIEHYGCIVDLYSRAGRLE---DALNVVENM-PMKP-NE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.|+..+-..+..++.+....+ +++.+++.+ ...| +. .....|.-++.+.|++++|.++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456666566666666665443 455566554 2233 22 34455666889999999999999999999998754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.23 E-value=25 Score=33.11 Aligned_cols=199 Identities=9% Similarity=0.018 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHhcCCC---------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH----HHcc
Q 010496 162 RGDIESAVRMFDEMPV---------RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA----CANV 228 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~----~~~~ 228 (509)
.|++++|++.+-.+.+ ........++..|...|+++...+.+..+....-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 3678888887754431 145567788999999999999988887665432122 2222333332 2333
Q ss_pred CCHHHHH--HHHHHHHH--cC-CCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhccC----C-C----hhhHHHHHHHH
Q 010496 229 GTLGIGL--WIHRYVLK--QD-FKD---NVKVCNTLIDLYSRCGCIEFARQVFQRMHK----R-T----LVSWNSIIVGF 291 (509)
Q Consensus 229 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~----~~~~~~l~~~~ 291 (509)
...+... .+...... .| +-. .......|...|...|++.+|.+++..+.. . + +..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111110 11 111 233456788999999999999999998762 1 1 24677778889
Q ss_pred HhCCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 292 AVNGFVGEALEYFNSMQK----EGFKPDG--VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
...+++..|..++.++.. ....|+. ..+...+..+...+++.+|.+ .|..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccccc
Confidence 999999999999998743 2222221 233344445555566655432 255566677777
Q ss_pred CChHHHHHHHHh
Q 010496 366 GRLEDALNVVEN 377 (509)
Q Consensus 366 g~~~~A~~~~~~ 377 (509)
++.......+..
T Consensus 252 ~d~~~~~~~L~~ 263 (445)
T 4b4t_P 252 SDEAKWKPVLSH 263 (445)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 776655544443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=81.50 E-value=25 Score=30.33 Aligned_cols=9 Identities=0% Similarity=0.110 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 010496 403 AERLMKYLV 411 (509)
Q Consensus 403 a~~~~~~~~ 411 (509)
+...+..+.
T Consensus 253 ~~~~L~~~l 261 (280)
T 1oyz_A 253 LLPVLDTML 261 (280)
T ss_dssp GHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333333333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 509 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 44/292 (15%), Positives = 77/292 (26%), Gaps = 9/292 (3%)
Query: 159 YMRRGDIESAVRMFDEM----PVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214
+ GD E+A R ++ P + L + + + + P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPL 65
Query: 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274
S L H + D + L G +E A Q +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 275 RMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334
+ + + +G E K + + C E
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLA 392
L K + ++ Y + ++ A + A+ + VV G+L
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444
+G I LA + ++L P Y LAN G A T
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 43/337 (12%), Positives = 103/337 (30%), Gaps = 14/337 (4%)
Query: 111 LGLDRNNVMVGTALLDMYAKFGRMDLATVVFD-AMRVKSSF--TWNAMIDGY-MRRGDIE 166
+ +N V L ++ + R+D + A++ ++ + + Y R E
Sbjct: 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85
Query: 167 SAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACA 226
+ + ++ + + + PD + S L
Sbjct: 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145
Query: 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR---MHKRTLVS 283
+ + + L +++ G I A F++ + L +
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
Query: 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343
+ ++ A+ + V A GLI+ + + +
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC-VYYEQGLIDLAIDTY---R 261
Query: 344 KIYRVSPRI-EHYGCIVDLYSRAGRLEDALNVVEN--MPMKPNEVVLGSLLAACRTKGDI 400
+ + P + Y + + G + +A + + L +L R +G+I
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437
A RL + +++ P + + LA++ GK A
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 38/393 (9%), Positives = 102/393 (25%), Gaps = 27/393 (6%)
Query: 54 RHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVC---K 110
R ++G A ++ P++ + LLS +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSI------HFQCRRLDRSAHFSTLA 59
Query: 111 LGLDRNNVMV----GTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIE 166
+ + G + ++ N
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 167 SAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL-NAC 225
+ + + G + + ++ +P++ S L
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLV 282
G + + + + D + + L ++ + A + R V
Sbjct: 180 NAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL-TACSHAGLIEDGLRYFDI 341
++ + G + A++ + + +P L A G + + ++
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN- 295
Query: 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN-MPMKPNEVVLGSLLA-ACRTKGD 399
+ + + ++ G +E+A+ + + + P S LA + +G
Sbjct: 296 -TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 400 IILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432
+ A K + + P Y + N +
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 38/255 (14%), Positives = 77/255 (30%), Gaps = 6/255 (2%)
Query: 186 LLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL-NACANVGTLGIGLWIHRYVLKQ 244
L + + G FE A Q+ EPD ++ +L + L +KQ
Sbjct: 5 LAHREYQAGDFEAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 245 DFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 304
+ + + L ++Y G ++ A + ++ + + I A G+
Sbjct: 63 N-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 305 NSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR 364
+ + + L +K I + + +++
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 365 AGRLEDALNVVENMP-MKPNEVVLGSLLA-ACRTKGDIILAERLMKYLVDLDPGVDSNYV 422
G + A++ E + PN + L + A + L P +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 423 LLANMYAAVGKWDGA 437
LA +Y G D A
Sbjct: 242 NLACVYYEQGLIDLA 256
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 509 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.64 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.34 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.2 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.02 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.69 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.63 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.41 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.38 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.32 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.07 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.01 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.04 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.02 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.59 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.78 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.12 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.78 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.7e-23 Score=192.13 Aligned_cols=372 Identities=13% Similarity=0.133 Sum_probs=306.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYA 129 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (509)
+...+.+.|++++|+..|+++.+. .| +...+..+...+... |+++.|...+..+.+.. |++..++..+..+|.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~ 78 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhh
Confidence 456778899999999999999885 45 456677777777788 99999999999999885 777999999999999
Q ss_pred hcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 130 KFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEM---PVRDAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+.|++++|+..++.... .+...+..........+....+....... ..................+....+...+
T Consensus 79 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 99999999999998863 24444444444555555544444444322 2335556666777778888899999988
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CC
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RT 280 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~ 280 (509)
....... +.+...+..+...+...|+++.|...+++.++.. |.+..++..+..++...|++++|...+++... .+
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 236 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH
Confidence 8887753 3456778888889999999999999999999876 66788899999999999999999999988763 46
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
...+..+...+.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...++.... ..+.+...+..+..
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHH
Confidence 6778889999999999999999999998863 33567888899999999999999999999885 34557788889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
.+.+.|++++|++.+++. ...|+ ..++..+..++...|++++|.+.|+++++.+|+++.+|..++.+|.+.|+
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999885 66674 66888999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.3e-21 Score=184.26 Aligned_cols=345 Identities=13% Similarity=0.076 Sum_probs=293.3
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
|+++.|.+.+..+.+.. |+++.++..+..+|.+.|++++|+..|+++.+ | +..+|..+...|.+.|++++|.+.+
T Consensus 13 G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence 89999999999999884 78899999999999999999999999998863 3 6778999999999999999999999
Q ss_pred hcCCC---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 173 DEMPV---RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 173 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
..... .+...+..........+....+........... .................+....+...+....... +.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (388)
T d1w3ba_ 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cch
Confidence 87653 355556666666667777777777776666553 3445555566667788888899998888888775 667
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
...+..+...+...|++++|...+++.. ..+...|..+...+...|++++|+..+++....+ +.+...+..+...+
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 247 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHH
Confidence 8888999999999999999999999875 3466788999999999999999999999998864 34667788888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
.+.|++++|+..|+++.+ -.+-+..++..+...+...|++++|.+.++.. ..+.+...+..+...+...|++++|+
T Consensus 248 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHH
Confidence 999999999999999984 22345788999999999999999999999887 23456778899999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.++++++..|+++.++..++.+|.+.|++++|.+.|++..+.
T Consensus 326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.9e-15 Score=134.75 Aligned_cols=241 Identities=12% Similarity=0.004 Sum_probs=172.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|+++.|...+.++++.. |-+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666778888888888888887753 3346677777778888888888888888877765 556777777777788888
Q ss_pred CHHHHHHHHHhccCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 265 CIEFARQVFQRMHKRTLVS---WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
++++|.+.++.+...++.. +....... ...+.......+..+...+.+.+|...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 8888877777664321110 00000000 000001111112233444567778888888
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
+.+......+...+..+...+...|++++|+..+++. ...| +...|..+...+...|++++|.+.++++++..|.++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7754444456777888888999999999999999886 4445 5678889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++..++.+|.+.|++++|++.|++.++.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998774
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.2e-14 Score=132.68 Aligned_cols=267 Identities=12% Similarity=0.065 Sum_probs=196.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
.....+.+.|++++|...|+.+.+ .+..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456778899999999999998743 368899999999999999999999999998863 3357788888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
+++|.+.++++.... +.....+......... .+.......+..+...+.+.+|...+.+....
T Consensus 103 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYT-PAYAHLVTPAEEGAGG----------------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTS-TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc-cchHHHHHhhhhhhhh----------------cccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999998764 2222111111000000 00011111122334455677888888887764
Q ss_pred CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 010496 311 GF-KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVL 387 (509)
Q Consensus 311 g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 387 (509)
.. .++...+..+...+...|++++|+..+++..+. .+-+...|..+...|.+.|++++|.+.+++. ...| +..++
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 32 345677778888899999999999999998843 2335778889999999999999999999886 5556 56789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------hHHHHHHHHHHcCCchHHHHH
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVDS-----------NYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 440 (509)
..++.+|...|++++|++.|+++++..|.+.. .|..+..++...|+.+.+...
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999998776543 345566677777777655433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=6.6e-10 Score=101.74 Aligned_cols=261 Identities=11% Similarity=-0.010 Sum_probs=177.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCcHhHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPD------YVTIISVLNACANVGTLGIGLWIHRYVLKQDF-----KDNVKVC 253 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~ 253 (509)
.....+...|++++|++++++..+. .|+ ...+..+..++...|++++|...++++.+... +.....+
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3455667788888888888887764 232 13455566777788888888888887765321 1113345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCCCHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHK-------R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG----FKPDGVS 318 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~ 318 (509)
..+...+...|++..+...+..... + ....+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 6667777888888888777766531 1 11245556677888889998888888877642 2223345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-----RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-----NEVVL 387 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~ 387 (509)
+......+...++...+...+........... ....+..+...+...|++++|...++.. ...| ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 55566667778888888888776654222211 1234556667788889999999998876 2222 23466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLD------PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..+..++...|++++|...+++++... |....++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 677888999999999999999887532 223446888999999999999999999887653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.3e-10 Score=101.57 Aligned_cols=222 Identities=12% Similarity=-0.023 Sum_probs=138.2
Q ss_pred ChHHHHHHHHHHHHcCC-CC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 195 YFEEALECFREMQISGV-EP--DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
+.+.++..+++...... .+ ...+|..+..+|.+.|++++|...|++.++.. |-+..+|..+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34555556666654321 11 12355566777888888888888888888776 6677888888888888888888888
Q ss_pred HHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 010496 272 VFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV 348 (509)
Q Consensus 272 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 348 (509)
.|+++.+ .+..++..+..++...|++++|...|++.++.. +.+......+..++.+.+..+.+..+...... .
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S-- 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S--
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-c--
Confidence 8887763 345677788888888888888888888887753 22344433344445555555555555555442 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHH-HhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 349 SPRIEHYGCIVDLYSRAGRLEDALNVV-ENM----PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
.+....+. ++..+............. ... ...|+ ..+|..+...+...|++++|...|++++...|.+-..|.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 12221222 222222222222222111 111 12232 346777888999999999999999999999998654443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.7e-10 Score=100.73 Aligned_cols=202 Identities=14% Similarity=0.120 Sum_probs=98.5
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-CIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGE 299 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 299 (509)
.+.+.+.+++|+++++++++.+ |-+..+|+....++...| ++++|+..++++. ..+..+|..+...+...|++++
T Consensus 52 ~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 52 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHH
Confidence 3344444444444444444443 334444444444444433 2444444444433 1233444444455555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC------hHHHHH
Q 010496 300 ALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR------LEDALN 373 (509)
Q Consensus 300 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~ 373 (509)
|+..++++++.. +-+...|..+...+.+.|++++|+..++++.+. -+-+...|+.+...+.+.+. +++|++
T Consensus 131 Al~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 131 ELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence 555555555532 223445555555555555555555555555531 12234445444444444333 345555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHH
Q 010496 374 VVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS--NYVLLANMYAA 430 (509)
Q Consensus 374 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 430 (509)
.+..+ ...| +...|..+...+. ....+++.+.++.+.+..|.... .+..++..|..
T Consensus 208 ~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 208 YTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 55543 3344 4455555554443 33456677777777777666333 34555666543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.8e-09 Score=96.81 Aligned_cols=210 Identities=11% Similarity=0.094 Sum_probs=140.7
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
..+|+.+...+.+.+.+++|+++++++++.+ +-+...|+....++...| ++++|...++.+++.. |-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 4456667777777888888888888888753 334556677777776665 4788888888888776 667788888888
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----
Q 010496 259 LYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL---- 331 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---- 331 (509)
++.+.|++++|++.++++.+ .+..+|..+...+...|++++|++.++++++... -+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchh
Confidence 88888888888888887763 3567788888888888888888888888887632 245566655555444433
Q ss_pred --HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 010496 332 --IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM----PMKPNEVVLGSLLAACR 395 (509)
Q Consensus 332 --~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 395 (509)
+++|+..+.++.+. .+.+...|..+...+... ..+++.+.++.. ....+...+..++..|.
T Consensus 200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 56777777777742 233566666666555443 345555555443 22234556666666553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.9e-09 Score=98.64 Aligned_cols=258 Identities=11% Similarity=0.025 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC---c
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGV-EPD----YVTIISVLNACANVGTLGIGLWIHRYVLKQ----DFKD---N 249 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~ 249 (509)
++..+..++...|++++|+..|++...... .++ ...+..+...+...|++..+...+...... +.+. .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 344555566666666666666665543210 011 123344455566666666666666655432 1111 1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHKR--------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE----GFKPD-- 315 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-- 315 (509)
...+..+...+...|+++.+...+...... ....+......+...++...+...+.+.... +..+.
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 234455566677777777777776655410 1234444555666677777777776655431 11111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRLEDALNVVENM-------PMKPN-EV 385 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 385 (509)
...+..+...+...|+++.|...++...+.....+ ....+..+...+...|++++|...+++. +..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 12344455567778888888888887763221111 2345566778888889988888888765 33343 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHHcCCchHHHH
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGV---------DSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
.+..+...+...|++++|.+.+++++++.+.. ...+..++..+...++.+++.+
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 67778888999999999999999887754321 1234455566667777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=1e-08 Score=91.64 Aligned_cols=179 Identities=8% Similarity=0.001 Sum_probs=108.9
Q ss_pred HHHHHHHHHhccC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 266 IEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 266 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
.++|..+|++..+ .+...|...+..+...|+++.|..+|++++..........|...+..+.+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4556666665432 244456666666666777777777777766643222344566666666677777777777777
Q ss_pred hHHhcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 342 MKKIYRVSPRIEHYGCIVDL-YSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
+.+. .+.+...|...+.. +...|+.+.|..+|+.+ . ...+...|...+..+...|+++.|..+|++++...|.++
T Consensus 160 al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 7632 22233334333332 23346677777777665 2 223455677777777777777777777777777665433
Q ss_pred c----hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 419 S----NYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 419 ~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
. .|...+..-...|+.+.+.++++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 466666666667777777777777655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=5.1e-10 Score=97.68 Aligned_cols=215 Identities=10% Similarity=-0.023 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHH
Q 010496 230 TLGIGLWIHRYVLKQDFKD---NVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEY 303 (509)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 303 (509)
+.+.++.-+++++...... ...++..+..+|.+.|++++|+..|++.. ..++.+|..+..++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455666666666543111 24577888999999999999999999876 35778999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 010496 304 FNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP 382 (509)
Q Consensus 304 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 382 (509)
|+++++... -+..++..+..++...|++++|...+++..+.. +.+......+..++.+.+..+.+..+.... ...+
T Consensus 94 ~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999998632 245678888889999999999999999998532 234444444445555556555544444333 1122
Q ss_pred CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 383 NEVVLGSLLAACR----TKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 383 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
....+. ++..+. ..+..+.+...+.......|....+|..++..|...|++++|.+.|++.+...
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222222 122221 12234444444444444445555678889999999999999999999988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.3e-08 Score=91.03 Aligned_cols=218 Identities=9% Similarity=-0.009 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHH--------------ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 197 EEALECFREMQISGVEPDYVTIISVLNACA--------------NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
+.+..+|+++... ++-+...|...+..+. ..+..++|..+|++.++...+.+...+...+..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4455566666554 2334444443333222 223457888999999876556677788888999999
Q ss_pred cCCHHHHHHHHHhccCC---C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHH
Q 010496 263 CGCIEFARQVFQRMHKR---T-LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA-CSHAGLIEDGLR 337 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~ 337 (509)
.|+++.|..+|+++.+. + ...|...+..+.+.|+.+.|.++|+++++.+.. +...|...... +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence 99999999999987642 3 346888899999999999999999999886433 33344333322 344689999999
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010496 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM----PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 411 (509)
+|+.+.+. .+.+...|...++.+.+.|+++.|..+|++. +..|+ ...|...+..-...|+.+.+..+++++.
T Consensus 191 i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999963 3456788999999999999999999999986 23442 4588888888889999999999999999
Q ss_pred hcCCCCC
Q 010496 412 DLDPGVD 418 (509)
Q Consensus 412 ~~~~~~~ 418 (509)
+..|...
T Consensus 269 ~~~~~~~ 275 (308)
T d2onda1 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHCcccc
Confidence 9887643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=2e-10 Score=104.57 Aligned_cols=231 Identities=8% Similarity=-0.064 Sum_probs=168.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHH
Q 010496 191 VKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG--TLGIGLWIHRYVLKQDFKDNVKVC-NTLIDLYSRCGCIE 267 (509)
Q Consensus 191 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 267 (509)
...|++++|+.+++...+.. +-+...+..+..++...+ +++++...+..+++.. +.+...+ ......+...+.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 34556788888898888753 335666666666666554 4789999999998876 4555554 45557777889999
Q ss_pred HHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 268 FARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 268 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+|+..++.+.+. +...|+.+..++...|++++|...+.+.... .|+.. .+...+...+..+.+...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999988754 5677888888899999888877666554442 22221 222334555666777777777763
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
..+++...+..++..+...|+.++|...+.+. ...|+ ..++..++.++...|++++|.+.++++++.+|.....|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 23344555666777888889999999998776 55564 558888889999999999999999999999998877888
Q ss_pred HHHHHHHH
Q 010496 423 LLANMYAA 430 (509)
Q Consensus 423 ~l~~~~~~ 430 (509)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88777664
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=4.5e-10 Score=102.18 Aligned_cols=252 Identities=11% Similarity=-0.016 Sum_probs=181.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHH---HHH-------HHccCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 010496 186 LLNGFVKRGYFEEALECFREMQISGVEPDYV-TIISV---LNA-------CANVGTLGIGLWIHRYVLKQDFKDNVKVCN 254 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l---~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 254 (509)
++....+.+..++|++++++..+. .|+.. .|+.. +.. +...|.+++|+.+++.+++.. |.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333444568999999999875 56543 34322 222 233445788999999999876 77788888
Q ss_pred HHHHHHHhcC--CHHHHHHHHHhccC---CChhhHH-HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 255 TLIDLYSRCG--CIEFARQVFQRMHK---RTLVSWN-SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 255 ~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
.+..++...+ ++++|...+.++.+ ++...+. .....+...+.+++|+..+++++.... -+...|..+..++.+
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 8887777766 48899999998753 3445554 444677788999999999999988743 367788888888999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMK-PNEVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
.|++++|...+....+. .|. ...+...+...+..+++...+... ... ++...+..++..+...|+..+|...
T Consensus 191 ~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 99888876666555521 111 122333455566667777766654 222 3444566667777888999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 407 MKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+....+|.+..++..++.+|.+.|++++|++.+++..+.
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999774
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=6e-07 Score=73.42 Aligned_cols=141 Identities=12% Similarity=-0.036 Sum_probs=99.0
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010496 257 IDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 336 (509)
...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4556777888888888888887888888888888888888888888888888763 235667777888888888888888
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 337 RYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
..|++..+. .+.+... .+...| ...+++ ..++..+..++...|++++|.+.++++++..|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888877631 1111100 000000 001111 23556677788899999999999999998888
Q ss_pred CC
Q 010496 416 GV 417 (509)
Q Consensus 416 ~~ 417 (509)
.+
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 75
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=1.8e-07 Score=82.45 Aligned_cols=130 Identities=9% Similarity=0.027 Sum_probs=77.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHh-cCChHHHHHHHHhC-------CCCCC-H
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSR-AGRLEDALNVVENM-------PMKPN-E 384 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~-~g~~~~A~~~~~~~-------~~~p~-~ 384 (509)
+|..+..+|.+.|++++|...+++..+...-..+ ..++..+...|.. .|++++|++.+++. +..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 4555555566666666666666654421111111 3334444445533 46777777666554 11111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-------NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.++..++..+...|++++|...++++....+..+. .+...+.++...|+++.|.+.+++..+.
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 35666777788888888888888888777665432 2455666777788888888888777554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.8e-07 Score=68.60 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=62.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 359 VDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44566667777777777665 3334 455677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhC
Q 010496 437 AGKIRRTMKGR 447 (509)
Q Consensus 437 A~~~~~~m~~~ 447 (509)
|+..|++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=9.4e-07 Score=72.21 Aligned_cols=87 Identities=9% Similarity=-0.086 Sum_probs=58.9
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGL 235 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 235 (509)
...+...|++++|++.|+.+..+++.+|..+..+|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3445666777777777777666666677777777777777777777777777653 334566666666777777777777
Q ss_pred HHHHHHHH
Q 010496 236 WIHRYVLK 243 (509)
Q Consensus 236 ~~~~~~~~ 243 (509)
..|++.+.
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1.1e-07 Score=78.80 Aligned_cols=116 Identities=9% Similarity=-0.124 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010496 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLL 391 (509)
Q Consensus 314 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 391 (509)
|+...+......+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777777888888888888888888888743 2346777888888888888888888888776 5667 466888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.+|...|++++|...|+++++..|.+...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887776555444444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.62 E-value=9.3e-06 Score=70.08 Aligned_cols=226 Identities=10% Similarity=-0.043 Sum_probs=126.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCN 254 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 254 (509)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34455555555666666666666666665544 33333334444432 334455555555444433
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAV----NGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC---- 326 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---- 326 (509)
+......+...+.. ..+.+.|...++...+.|.... ...+...+
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCC
Confidence 22222222222221 3445566666666655543211 11111111
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENMPMKPNEVVLGSLLAACRT----KG 398 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 398 (509)
........+...+..... ..+...+..|...|.. ..+...+..+++...-..+......+...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 123445556666665552 2344555666666654 34555666666655333456666666666654 56
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAA----VGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 450 (509)
++++|...|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|..
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8999999999998875 46688889998886 44789999999999888754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.7e-07 Score=73.12 Aligned_cols=118 Identities=13% Similarity=0.031 Sum_probs=95.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 010496 321 GALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG 398 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 398 (509)
.....|.+.|++++|+..|+++.+.. +-+...|..+..+|...|++++|...|+++ .+.| +...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34556788999999999999998532 346888899999999999999999999887 5556 5678999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHcCCchHHHHH
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMY--AAVGKWDGAGKI 440 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 440 (509)
++++|...+++++...|.++..+..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888877776554 344556666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=3.4e-07 Score=68.13 Aligned_cols=105 Identities=17% Similarity=0.071 Sum_probs=84.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGD 399 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 399 (509)
-...+.+.|++++|+..|+++.+. .+.+...|..+..+|...|++++|+..+++. .+.| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 455677888899999999888852 2446778888888888999999999888876 4444 67788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 400 IILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+++|+..++++++..|.++..+..+..+-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999887777766553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=1.1e-07 Score=78.88 Aligned_cols=96 Identities=8% Similarity=-0.041 Sum_probs=80.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHH
Q 010496 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGC 357 (509)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 357 (509)
|+...+......+.+.|++++|+..|++.+... +-+...|..+..+|.+.|++++|+..|+++. .+.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 445556677888999999999999999988863 3467788888899999999999999999988 3455 5778889
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 010496 358 IVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~ 378 (509)
+..+|.+.|++++|+..|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=3.5e-06 Score=74.00 Aligned_cols=160 Identities=11% Similarity=-0.058 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCcHhHH
Q 010496 184 TALLNGFVKRGYFEEALECFREMQIS----GVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDF-----KDNVKVC 253 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~ 253 (509)
......|...|++++|.+.|.+.... +-.+ -..+|..+..+|.+.|++++|.+.+++..+... .....++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 34566778888888888888877542 1111 134566777777788888888877776654310 0113344
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----H-H
Q 010496 254 NTLIDLYSR-CGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-----G-V 317 (509)
Q Consensus 254 ~~l~~~~~~-~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~-~ 317 (509)
..+...|.. .|++++|.+.|++..+ .+ ..++..+...+...|++++|+..|+++........ . .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 555555533 4667777666665431 11 12355555666666666666666666554321110 0 1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.+...+..+...|+++.|...+++..
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 12223333445566666666666555
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.59 E-value=8.9e-08 Score=70.71 Aligned_cols=90 Identities=18% Similarity=-0.064 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 356 GCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
..+...+.+.|++++|+..+++. ...| +...|..+..++.+.|++++|+..++++++.+|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34566788899999999999887 4556 577999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH
Q 010496 434 WDGAGKIRRTMK 445 (509)
Q Consensus 434 ~~~A~~~~~~m~ 445 (509)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4.4e-07 Score=71.83 Aligned_cols=93 Identities=19% Similarity=0.128 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 356 GCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
......|.+.|++++|+..|++. ...| +...|..+..+|...|++++|...|+++++.+|.+..+|..++.+|...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34456788999999999999987 4555 577999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCC
Q 010496 434 WDGAGKIRRTMKGRG 448 (509)
Q Consensus 434 ~~~A~~~~~~m~~~~ 448 (509)
+++|...+++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.2e-06 Score=68.38 Aligned_cols=84 Identities=14% Similarity=0.040 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA 430 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (509)
.+|+.+..+|.+.|++++|+..++.. .+.| +...+..++.++...|++++|...|+++++++|.++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35777888999999999999999886 5566 677999999999999999999999999999999998888888887766
Q ss_pred cCCchH
Q 010496 431 VGKWDG 436 (509)
Q Consensus 431 ~g~~~~ 436 (509)
.+...+
T Consensus 143 ~~~~~~ 148 (170)
T d1p5qa1 143 IRRQLA 148 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.8e-06 Score=66.94 Aligned_cols=111 Identities=10% Similarity=-0.013 Sum_probs=79.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (509)
.+......+.+.|++++|+..|++..+.....+... ... ......+ ...+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~-~~~~~~~----~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEE-AQKAQAL----RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHH-HHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHH-Hhhhchh----HHHHHHHHHHHHHhh
Confidence 344445567777777777777777764222111100 000 0000000 123677788899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|++++|+..++++++.+|.++.++..++.+|...|++++|+..|++..+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=0.00037 Score=59.57 Aligned_cols=157 Identities=9% Similarity=-0.018 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-DAISWTALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVL 222 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 222 (509)
|+..+..|...+.+.+++++|++.|++..+. +..++..|...|.. ..+...|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 5667788888889999999999999987544 77888888888877 668999999999988865 333344443
Q ss_pred HHHH----ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHh
Q 010496 223 NACA----NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV 293 (509)
Q Consensus 223 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 293 (509)
..+. ...+.+.|...++...+.|. ......+...+.. ......+...+....+ .+...+..+...+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 3333 35677889999988888762 2222333333332 2345555555554332 344555555555543
Q ss_pred ----CCChHHHHHHHHHHHHC
Q 010496 294 ----NGFVGEALEYFNSMQKE 310 (509)
Q Consensus 294 ----~~~~~~A~~~~~~m~~~ 310 (509)
..+...+...++...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~ 175 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDL 175 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCcccccccchhhhhccccc
Confidence 23344444444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.1e-06 Score=65.56 Aligned_cols=103 Identities=13% Similarity=0.003 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR---LEDALNVVENM-PMKPNE---VVLGSLLA 392 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 392 (509)
..+++.+...+++++|++.|++..+. -+.+..++..+..++.+.++ +++|+.+++++ ...|+. .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677777788888888888888742 23466777777777776544 44678888775 344432 25667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 010496 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLL 424 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 424 (509)
+|.+.|++++|.+.|+++++.+|.+..+....
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 88888888888888888888888776554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.34 E-value=7.1e-06 Score=64.00 Aligned_cols=63 Identities=11% Similarity=-0.062 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+|..+..+|.+.|++++|++.++++++.+|.+..+|..++.+|...|++++|+..|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467778888999999999999999999999999999999999999999999999999988764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.5e-06 Score=64.75 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCC-HHHHHHHHH
Q 010496 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL---IEDGLRYFDIMKKIYRVSPR-IEHYGCIVD 360 (509)
Q Consensus 285 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~~~li~ 360 (509)
..+++.+...+++++|++.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++.+ ....|+ ..++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHH
Confidence 345666667777777777777777653 3355666666666665443 3457777777662 111122 235666777
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCHH
Q 010496 361 LYSRAGRLEDALNVVENM-PMKPNEV 385 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p~~~ 385 (509)
+|.+.|++++|++.|+++ .+.|+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 777777777777777765 4556433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=0.00081 Score=58.92 Aligned_cols=257 Identities=14% Similarity=0.101 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHH
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALE 201 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 201 (509)
......|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++... .+..+|..+...+.+.....-|
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la-- 88 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA-- 88 (336)
T ss_dssp -----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHH--
Confidence 3445555566666666666665432 445556666666666666666543 2455666666666665544332
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-C
Q 010496 202 CFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-T 280 (509)
Q Consensus 202 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~ 280 (509)
.+...+...+......++..|-..|.+++...+++...... +.+...++.++..|++.+ .++..+.++..... |
T Consensus 89 ---~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~ 163 (336)
T d1b89a_ 89 ---QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVN 163 (336)
T ss_dssp ---HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSC
T ss_pred ---HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCC
Confidence 12222223344455566666666666666666666655432 445556666666666643 34444444433211 1
Q ss_pred ----------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 010496 281 ----------LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP 350 (509)
Q Consensus 281 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 350 (509)
...|.-++-.|.+.|.++.|..++- ++ .++.......+..+.+..+.+...+++....+. .|
T Consensus 164 ~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p 235 (336)
T d1b89a_ 164 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP 235 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG
T ss_pred HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH
Confidence 1123344444555555555544332 21 222222333444455556665555555554421 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHhcCCHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENMP-------------MKPNEVVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------------~~p~~~~~~~l~~~~~~~g~~~~ 402 (509)
...+.++......-+..++.+.+++-+ -..+..+.+++...|...++++.
T Consensus 236 --~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 236 --LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp --GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHH
Confidence 223444444444555555555544431 11233455555555555555433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=5.4e-06 Score=60.73 Aligned_cols=90 Identities=12% Similarity=-0.044 Sum_probs=66.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
.+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|...++++++.. |.+..++..+..+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 45666777788888888888877753 2356777777777778888888888888777776 666777777777787778
Q ss_pred CHHHHHHHHHhc
Q 010496 265 CIEFARQVFQRM 276 (509)
Q Consensus 265 ~~~~a~~~~~~~ 276 (509)
++++|.+.|++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 887777777653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.20 E-value=1.7e-05 Score=62.88 Aligned_cols=93 Identities=10% Similarity=0.048 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA 430 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (509)
.+|..+..+|.+.|++++|+..++.. ...| +...|..+..++...|++++|...|+++++++|.++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35667888899999999999999886 4445 677899999999999999999999999999999998888888887766
Q ss_pred cCCch-HHHHHHHHHH
Q 010496 431 VGKWD-GAGKIRRTMK 445 (509)
Q Consensus 431 ~g~~~-~A~~~~~~m~ 445 (509)
.+... ...+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 65443 3455555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2e-07 Score=88.87 Aligned_cols=112 Identities=8% Similarity=-0.055 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAA 393 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 393 (509)
...+..+...+.+.|+.+.|...++...+. . ...++..+...+...|++++|...+++. .+.|+ ...|+.|+..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 334455555556666666666655554421 0 1234555666666666666666666665 34443 3466666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
+...|+..+|...|.+++...|+.+.++..|+..+.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=9.6e-06 Score=64.54 Aligned_cols=64 Identities=13% Similarity=-0.021 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...+..+..++.+.|++++|+..+.++++.+|.++.+|..++.+|.+.|++++|++.|++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4467777888888999999999999999999988888999999999999999999999888774
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=8.2e-06 Score=64.95 Aligned_cols=85 Identities=11% Similarity=-0.006 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
....|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|.+.|+++++.+|.++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556788889999999999999999887 6666 5679999999999999999999999999999999988888887776
Q ss_pred HHcCCch
Q 010496 429 AAVGKWD 435 (509)
Q Consensus 429 ~~~g~~~ 435 (509)
.+.....
T Consensus 156 ~~l~~~~ 162 (169)
T d1ihga1 156 QKIKAQK 162 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=2.5e-05 Score=60.76 Aligned_cols=126 Identities=12% Similarity=-0.073 Sum_probs=88.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY 362 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (509)
.+...+..+.+.|++.+|+..|.+.+..- +. ............... ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-----------~~~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-----------TEEWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-----------CTTCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-----------hhhhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 34555666777788888888887776531 10 000000000000011 1234677888999
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 363 SRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 363 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
.+.|++++|++.++.+ ...| +..+|..++.++...|++++|...|+++++++|.+..+...+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999886 5556 67799999999999999999999999999999998887776665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=7.8e-06 Score=61.54 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-------NYVLLA 425 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~ 425 (509)
+..+...|.+.|++++|+..|++. ...| +...+..+..+|.+.|++++|++.++++++.+|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 455777888889999999998876 4445 5778888999999999999999999999998887655 455666
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010496 426 NMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..+...+++++|++.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 777888899999999987754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.09 E-value=4.8e-05 Score=60.18 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+|..+..+|.+.|++++|+..++++++.+|.+..+|..++.+|...|++++|...|+++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678888999999999999999999999999999999999999999999999999999875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.02 E-value=1.9e-05 Score=63.15 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=84.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE-DALNVVENMPMKPNEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 400 (509)
........|++++|...|........-.+-.. + ..+.+- ....-++. -....+..++..+...|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 33466778999999999998884322111000 0 001111 00011111 0234677888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccCC
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG-----RGIQKKP 453 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 453 (509)
++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999854 5777654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=5.3e-05 Score=56.76 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=41.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---Ch-------hhHHHHHHHHH
Q 010496 223 NACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TL-------VSWNSIIVGFA 292 (509)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-------~~~~~l~~~~~ 292 (509)
..+...|++++|...|.+.++.+ |.+..++..+..+|.+.|++++|+..++++.+- +. .+|..+...+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443 334444444444444445555444444443321 11 13344445555
Q ss_pred hCCChHHHHHHHHHHHHC
Q 010496 293 VNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 293 ~~~~~~~A~~~~~~m~~~ 310 (509)
..+++++|+..|++....
T Consensus 91 ~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 566666666666665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=3.7e-06 Score=79.95 Aligned_cols=220 Identities=10% Similarity=-0.024 Sum_probs=121.7
Q ss_pred HHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHH
Q 010496 167 SAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV-TIISVLNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 167 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (509)
+|.+.|++... ....++..+..++...|++++| |+++... .|+.. .++. ....-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV--EQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH--HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH--HHHHHHHHHHHHHHHHHHhc
Confidence 45555554432 2345666677788888888776 6666653 33211 1111 11111112455666777666
Q ss_pred HcCCCCcHhHHHH--HHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010496 243 KQDFKDNVKVCNT--LIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317 (509)
Q Consensus 243 ~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 317 (509)
+....++..-... +...+...+.++.|+..++...+ ++...+..+...+.+.|+.+.|...+.+.... .| ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence 5543333322221 22223345667777777665543 35567788888889999999999988877653 22 35
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACR 395 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 395 (509)
++..+...+...|++++|+..|+++.+. .+.+...|+.|...+...|+..+|...|.+. . ..|-..++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6777888999999999999999999953 2345788999999999999999999999886 3 4566778888887765
Q ss_pred hcC
Q 010496 396 TKG 398 (509)
Q Consensus 396 ~~g 398 (509)
+..
T Consensus 232 ~~~ 234 (497)
T d1ya0a1 232 KAL 234 (497)
T ss_dssp HHT
T ss_pred Hhh
Confidence 443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=3.6e-05 Score=59.16 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
.+++|.+.|+++++.+|.+...+..|... .+|.+++.+..++|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 46889999999999999987666666655 466777777777664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.69 E-value=0.00011 Score=57.16 Aligned_cols=63 Identities=11% Similarity=-0.155 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----C-------CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPG----V-------DSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..|+.+..+|...|++++|...++++++..+. . ..++..++.+|...|++++|++.|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888889999999999988888875332 1 125788999999999999999999998764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00016 Score=50.66 Aligned_cols=75 Identities=21% Similarity=0.079 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-C-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-P-------MKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
..+..+...+.+.|++++|...|++. . ..++ ..++..+..++.+.|++++|...++++++.+|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 33445667777777777777777664 1 1223 4578889999999999999999999999999998888777
Q ss_pred HHHH
Q 010496 424 LANM 427 (509)
Q Consensus 424 l~~~ 427 (509)
+...
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.46 E-value=0.00026 Score=60.12 Aligned_cols=127 Identities=13% Similarity=-0.008 Sum_probs=87.3
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 369 (509)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 346789999999999998863 346678888899999999999999999998842 353 455555555555444444
Q ss_pred HHHHHHHhC--CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 010496 370 DALNVVENM--PMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 370 ~A~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
++..-.... ...|+. ..+......+...|+.++|.+.++++.+..|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 443322221 123332 3444455667888999999999999999888866543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.00078 Score=52.12 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=60.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC---
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPR----------IEHYGCIVDLYSRAGRLEDALNVVENM--------PMKPN--- 383 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~--- 383 (509)
.+.+.|++++|+..|++..+...-.|+ ..+|+.+..+|...|++++|...+++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666666543222221 245666777777777777777666554 12222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 384 --EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 384 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
...+..+..+|...|++++|+..|++++++.|.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 225677888999999999999999999887554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.41 E-value=0.00055 Score=52.22 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=66.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANV----------GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
|-+.+.+++|+..|+...+.. +.+...+..+..++... +.+++|...|+++++.+ |.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345556778888888877753 33556666666665533 34467777777777776 6667777777777
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
|...|++.. +.. ...+.++.|.+.|++.++. .|+...+..-+..+
T Consensus 85 y~~~g~~~~-----------~~~---------~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTP-----------DET---------EAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCC-----------CHH---------HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHcccchh-----------hHH---------HHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH
Confidence 766543210 000 0012346666777776663 55555555544444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.40 E-value=0.0012 Score=52.18 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=78.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
.........|++++|.+.|.+.... .+....- . ...+.+ +...-..+.. .....+..++.++.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l~-----~-~~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE--WRGPVLD-----D-LRDFQF--VEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTTG-----G-GTTSTT--HHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--Ccccccc-----c-CcchHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 3445678888999998888888764 2211000 0 000111 0111111111 12456777888888999
Q ss_pred CHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH
Q 010496 265 CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQK-----EGFKPDGVS 318 (509)
Q Consensus 265 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~ 318 (509)
++++|+..++++.. .+...|..++.+|...|+..+|++.|+++.. .|+.|...+
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999998888763 3667888999999999999999998888743 588888765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.38 E-value=0.00017 Score=61.32 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=23.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 010496 192 KRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ 244 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (509)
+.|++++|+..+++.++.. +-+...+..+...++..|++++|.+.++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444444444444444432 223444444444444444444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.00057 Score=47.66 Aligned_cols=64 Identities=16% Similarity=-0.060 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV-------DSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...+..+...+.+.|++++|...|+++++..|.+ ..++..++.+|.+.|++++|+..++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445577888999999999999999999875542 236889999999999999999999999875
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.32 E-value=0.042 Score=47.70 Aligned_cols=116 Identities=9% Similarity=-0.031 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---------
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT--------- 324 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~--------- 324 (509)
..++-.|.+.|+++.|..+.-.-. ++..-....+..+.+..+.+...+++.-..+. .|+ ..+.++.
T Consensus 178 ~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~ 252 (336)
T d1b89a_ 178 AELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHT 252 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHH
Confidence 344455555555555544432221 12222333444455555555444444444332 222 2233333
Q ss_pred ----HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 325 ----ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 325 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
.+.+.+++.....+++... ..+ +..+.++|...|...++++.-.+.++.-
T Consensus 253 r~V~~~~k~~~l~li~p~Le~v~-~~n---~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 253 RAVNYFSKVKQLPLVKPYLRSVQ-NHN---NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHH-TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHH-HcC---hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 3344455555555555544 222 3467888888999988877766666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.07 E-value=0.018 Score=40.82 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=96.7
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
+.-.|..++..+++.+.... .+..-|+.++.-....-+-+...+.++.+-+-+.+. .+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 44567777777777776653 245556666655555666666666666665433222 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010496 371 ALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 371 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
....+-.+. .+...++..+..+..+|+-+.-.++++.+.+.+..++.....++.+|.+.|...++-+++.+..++|+.
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 234455666788889999999999999988877778889999999999999999999999999999874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.12 Score=47.16 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKP--NEVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
.+..+.+...+..... . ..+.......+......+++..+...++.+...| ...-..-+..++...|+.++|...
T Consensus 265 ~~~~~~a~~~~~~~~~-~--~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcc-c--ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 4445555555555542 1 1233333334444555566666666666664222 222333445566666666666666
Q ss_pred HHHHHh
Q 010496 407 MKYLVD 412 (509)
Q Consensus 407 ~~~~~~ 412 (509)
|..+..
T Consensus 342 ~~~~a~ 347 (450)
T d1qsaa1 342 LHQLMQ 347 (450)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 666643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.02 Score=41.03 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 382 PNEVVLGSLLAACRTKG---DIILAERLMKYLVDLDPGVD-SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|...+--....+++++. +.++++.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33444444455555443 34566666666666555432 35566666666666666666666666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.04 E-value=0.087 Score=37.23 Aligned_cols=116 Identities=16% Similarity=0.083 Sum_probs=57.7
Q ss_pred HhcCCchHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---------------------CCHhHHHHH
Q 010496 129 AKFGRMDLATVVFDAMRVK-SSFTWNAMIDGYMRRGDIESAVRMFDEMPV---------------------RDAISWTAL 186 (509)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------~~~~~~~~l 186 (509)
.-.|..++..+++.+...+ +..-||.+|.-....-+-+...++++.+.. .+...++..
T Consensus 13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdlA 92 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKA 92 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHHH
Confidence 3346666666666655433 333444444444444444444444443321 122233444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
++...++|+-++-.++++.+.+.+ .|++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 455555555555555555544433 4555555555555555565555555555555555
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.02 E-value=0.084 Score=38.69 Aligned_cols=108 Identities=10% Similarity=-0.011 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 010496 195 YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFAR 270 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 270 (509)
++++|+++|++..+.| .+ ..+..+. .....+.++|.+++++..+.| +...+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g-~~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EM--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CT--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC-Ch--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4566777777766655 11 2222222 223345566666666666554 33344444444443 23344555
Q ss_pred HHHHhccC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHC
Q 010496 271 QVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNSMQKE 310 (509)
Q Consensus 271 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~ 310 (509)
++|++..+ .++.....|...|.. ..+.++|.++|++..+.
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 55544432 233333333333332 23344444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.59 E-value=0.071 Score=39.10 Aligned_cols=81 Identities=14% Similarity=-0.030 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHH
Q 010496 367 RLEDALNVVENMPMKPNEVVLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA----VGKWDGAG 438 (509)
Q Consensus 367 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 438 (509)
+.++|++++++.-..-+......|...|.. ..+.++|.+.|+++.+.+ ++.....|+..|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 444444444443212233333334443332 346777777777776653 34566677777765 35677788
Q ss_pred HHHHHHHhCCC
Q 010496 439 KIRRTMKGRGI 449 (509)
Q Consensus 439 ~~~~~m~~~~~ 449 (509)
++|++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88877777664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=2.4 Score=38.00 Aligned_cols=373 Identities=10% Similarity=0.012 Sum_probs=180.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK 130 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (509)
.+....+.|+...+..+...+... | ...|...-..-... +.. ...++...+.+..-.|-...........+.+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~--~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDL--MNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTG--GGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhcc--ccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHh
Confidence 455567788888888887777532 3 33343333222222 221 2233444444442222222333444566777
Q ss_pred cCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcC--C-CCCHhHHHHHHHHHHHcCChHH--HHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEM--P-VRDAISWTALLNGFVKRGYFEE--ALECFRE 205 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~--A~~~~~~ 205 (509)
.+++...+..+... ..+...-..+..+....|+.+.|...+..+ . ...+..+..+...+.+.|.... ..+-+..
T Consensus 85 ~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~ 163 (450)
T d1qsaa1 85 REDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRL 163 (450)
T ss_dssp TTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 88877766544321 124444556677777888887777766533 1 1133344444444444333221 1112222
Q ss_pred HHHcC-----------CCCCH-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh--cCCHHHHHH
Q 010496 206 MQISG-----------VEPDY-VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR--CGCIEFARQ 271 (509)
Q Consensus 206 m~~~~-----------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~ 271 (509)
+...| +.++. ......+........... ..... +.+......+..++.+ ..+.+.|..
T Consensus 164 ~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~------~~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~ 235 (450)
T d1qsaa1 164 AMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLT------FARTT--GATDFTRQMAAVAFASVARQDAENARL 235 (450)
T ss_dssp HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHH------HHHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHH------HHhcC--CCChhhhHHHHHHHHHHhccChhHHHH
Confidence 22211 11111 111112222111111111 00111 1222222222222222 245566666
Q ss_pred HHHhccCC---ChhhHHHH----HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 272 VFQRMHKR---TLVSWNSI----IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 272 ~~~~~~~~---~~~~~~~l----~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
++...... +...+..+ ...+...+..+.+...+......+. +.......+......+++..+...+..+..
T Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~ 313 (450)
T d1qsaa1 236 MIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPM 313 (450)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred HHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCc
Confidence 66554321 11111111 1122234455666666665555432 333333344444555677777776666542
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-------------------C-------CCC-HH---HHHHHHHHH
Q 010496 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP-------------------M-------KPN-EV---VLGSLLAAC 394 (509)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------------------~-------~p~-~~---~~~~l~~~~ 394 (509)
.......-.--+..++...|+.++|...|.... + .+. .. .-..-+..+
T Consensus 314 --~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L 391 (450)
T d1qsaa1 314 --EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVREL 391 (450)
T ss_dssp --TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHH
Confidence 111223333445666677777777776666541 0 011 11 111234567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
...|....|...+..+.+.. ++.....++....+.|.++.|+....+..
T Consensus 392 ~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 392 MYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 78999999999998887543 45567888999999999999998877653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.47 Score=33.60 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 350 PRIEHYGCIVDLYSRAG---RLEDALNVVENM-PMKP-NE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 350 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
+++.+-....-++.+.. +..+++.+++++ ...| +. ..+..|.-+|.+.|++++|.+.++++++.+|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 45555555556666554 345677777765 2334 33 355667778889999999999999999998887543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.12 E-value=0.64 Score=30.96 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++++-++.+.+. +...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 56677788888888888999999999999999999999999999999865543 3456666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.78 E-value=2.3 Score=28.24 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.... ..+...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 444555555555666777777777777777777777777776665442 22344454443
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