Citrus Sinensis ID: 010497


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
MNKARELLQQDDQQPTSITRILLLPPRHHTRSPFSFPVHFPSILSFTKTFVSPKVSSKVTDHHQRQYSIMASSNPSKALYPEVDLSNPEAASASTAASSSPSSLYPSVDMKDMAENLFPEDDAVSHITANAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPTSLAKAAVKANAAELKAKQSKKS
cHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEccccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccc
ccHHHHHHHccccccccHHHEHccccccccccccccccccccEHEccccccccccccEEccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccEEEEEcccEEEEEEcccccEEEccccEEEEEEEEcccEEEEEEEEcccccccccccccEEEEccccEEEEEccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccccEEccccHHHHHccccccccccccccHHHHHcccHHHHHHHHHHHHHHcHHHHHHHEEEHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHccccccHHHHccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccc
mnkarellqqddqqptsitrilllpprhhtrspfsfpvhfpsilsftktfvspkvsskvtdhhqrqysimassnpskalypevdlsnpeaasastaassspsslypsvdmkdmaenlfpeddavshitanappsehvlvkiPGAIVHLIEREqsvelasgELYIVSLSQGDNVVAVFARVgdeiqwplakdepavklddshyfftlrvpengsletdQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMGNWEMVAkemspeelksAENRelmgkssgaywtalapnvedysGSVARMIAAGSGQLIKGILWcgdvtvdglkwgngflrkrmgsgsqseispdTIKRIKRVKKLTKMSEKVATGILSGVVKvsgfftgpivnskvgkkffslLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRqafnpksafkptSLAKAAVKANAAELKAKQSKKS
mnkarellqqddqqptsiTRILLLPPRHHTRSPFSFPVHFPSILSFTKTFVSPKVSSKVTDHHQRQYSIMASSNPSKALYPEVDLSNPEAasastaassspsslYPSVDMKDMAENLFPEDDAVSHITANAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFlrkrmgsgsqseispdtikrIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEvagrnvmsttsvVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPTSLAKAAVKANAAelkakqskks
MNKARELLQQDDQQPTSITRILLLPPRHHTRSPFSFPVHFPSILSFTKTFVSPKVSSKVTDHHQRQYSIMASSNPSKALYPEVDLsnpeaasastaassspsslypsVDMKDMAENLFPEDDAVSHITANAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNvmsttsvvttglvsDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPTSLakaavkanaaelkakQSKKS
******************TRILLLPPRHHTRSPFSFPVHFPSILSFTKTFVS**********************************************************************************EHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMGNWEMV**********************GAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLR*********************VKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFN******************************
****************SITRILLLPPRHHTRSPFSFPVHFPSI**********************************************************************************************LVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRV***************LNYGLTIATKGQKHLLKELDKVLETYS***************************************************YSGSVARMIAAGSGQLIKGILWCGDVTVDG******************************VKKLTKMSEKVATGILSGVVKVSG**********************IVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNP*****************************
*************QPTSITRILLLPPRHHTRSPFSFPVHFPSILSFTKTFVS*************QYSIMASSNPSKALYPEVDLS******************YPSVDMKDMAENLFPEDDAVSHITANAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRK***********PDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPT**********************
************QQPTSITRILLLPPRHHTRSPFSFPVHFPSILSFTKTFVSPKVSSKVTDHHQRQYSIMASSNPS*AL*****LS*****************LYPSVDMKDMAENLFPED********NAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRVPE**********HEVLNYGLTIATKGQKHLLKELDKVLETYSCFSV***************MS**************KSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKS***P***********************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
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MNKARELLQQDDQQPTSITRILLLPPRHHTRSPFSFPVHFPSILSFTKTFVSPKVSSKVTDHHQRQYSIMASSNPSKALYPEVDLSNPEAASASTAASSSPSSLYPSVDMKDMAENLFPEDDAVSHITANAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPTSLAKAAVKANAAELKAKQSKKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query509 2.2.26 [Sep-21-2011]
Q8N0X7666 Spartin OS=Homo sapiens G yes no 0.339 0.259 0.267 2e-05
A0JNJ3668 Spartin OS=Bos taurus GN= yes no 0.349 0.266 0.265 3e-05
Q8R1X6671 Spartin OS=Mus musculus G yes no 0.339 0.257 0.261 0.0001
>sp|Q8N0X7|SPG20_HUMAN Spartin OS=Homo sapiens GN=SPG20 PE=1 SV=1 Back     alignment and function desciption
 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 18/191 (9%)

Query: 301 DYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQS-EISPDTIKRI 359
           ++S  VA  I +G+  +  G++   ++T   ++ G   LR+R+    +  E+SP   K +
Sbjct: 418 EWSEKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGL 477

Query: 360 KRVKKLTKMSEKVATGILSGVVKVS---GFFTGPIVNSKVGKKFF-----------SLLP 405
              K+ T  + KV+  ++ GV  V+   G    P V  K G K             S L 
Sbjct: 478 YIAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVK-KHGSKLVPESLKKDKDGKSPLD 536

Query: 406 GEIVLA--TLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGH 463
           G +V+A  ++ GF+ V   +E A + +++  S  T   V  +YG  A +AT+  +D+A +
Sbjct: 537 GAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVN 596

Query: 464 AFGTAWAVFKI 474
              TA+ +  I
Sbjct: 597 VGVTAYNINNI 607




May be implicated in endosomal trafficking, or microtubule dynamics, or both.
Homo sapiens (taxid: 9606)
>sp|A0JNJ3|SPG20_BOVIN Spartin OS=Bos taurus GN=SPG20 PE=2 SV=1 Back     alignment and function description
>sp|Q8R1X6|SPG20_MOUSE Spartin OS=Mus musculus GN=Spg20 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
225427999450 PREDICTED: uncharacterized protein LOC10 0.854 0.966 0.728 1e-172
224078263446 predicted protein [Populus trichocarpa] 0.842 0.961 0.692 1e-171
198400319448 senescence-related protein [Camellia sin 0.862 0.979 0.679 1e-166
449489654428 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.762 0.906 0.712 1e-158
224105177425 predicted protein [Populus trichocarpa] 0.789 0.945 0.662 1e-157
449458604427 PREDICTED: uncharacterized protein LOC10 0.754 0.899 0.712 1e-155
356538301447 PREDICTED: uncharacterized protein LOC10 0.852 0.970 0.611 1e-151
356495352448 PREDICTED: uncharacterized protein LOC10 0.854 0.970 0.618 1e-150
255577538442 conserved hypothetical protein [Ricinus 0.791 0.911 0.645 1e-150
297836496450 early-responsive to dehydration 7 [Arabi 0.836 0.946 0.608 1e-149
>gi|225427999|ref|XP_002278045.1| PREDICTED: uncharacterized protein LOC100267615 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 328/450 (72%), Positives = 373/450 (82%), Gaps = 15/450 (3%)

Query: 72  SSNPSK---ALYPEVDLSNPEAAS--ASTAASSSPSSLYPSVDMKDMAENLFP-EDDAVS 125
           SSNP +   +LYPEVDLSNPEA S   S   S+S SSLYPS+++K++AENLFP E+DAV 
Sbjct: 2   SSNPYRNPNSLYPEVDLSNPEATSPLISNPTSASSSSLYPSLEVKELAENLFPDENDAVL 61

Query: 126 HITANAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQ 185
               ++ P E VLV++ GAIVHLI+++ SVELASG L IV L QG+NVVAV AR+GDEIQ
Sbjct: 62  Q-NPSSQPFEEVLVRVSGAIVHLIDKQHSVELASGVLTIVRLRQGENVVAVLARIGDEIQ 120

Query: 186 WPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQV----HHEVLNYGLTIATKGQKHLLKE 241
           WPLAKDE AVKLD+SHYFF+LRVPE+GS             +LNYGLTIA+KGQ+ LLKE
Sbjct: 121 WPLAKDEAAVKLDESHYFFSLRVPESGSGSASSDDDGESENLLNYGLTIASKGQEGLLKE 180

Query: 242 LDKVLETYSCFSVQKVKNMGNWEM----VAKEMSPEELKSAENRELMGKSSGAYWTALAP 297
           LD VLE YSCFSVQKVK    WE+    VA+E SPE+L S + +ELM + SGAYWT LAP
Sbjct: 181 LDAVLEKYSCFSVQKVKGTVGWEVLDGSVARETSPEDLGSKKKKELMEERSGAYWTTLAP 240

Query: 298 NVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIK 357
           NVEDYSG VARMIAAGSGQLIKGILW G+VTVDGL WGN FL+KRMG GS+SEISP+ +K
Sbjct: 241 NVEDYSGCVARMIAAGSGQLIKGILWSGNVTVDGLNWGNEFLKKRMGPGSKSEISPEAMK 300

Query: 358 RIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFN 417
           R+KRVKKLTKMSEKVATG+LSGVVKVSGFFT  IVNSKVGKKFFSLLPGEIVLA+LDGFN
Sbjct: 301 RMKRVKKLTKMSEKVATGVLSGVVKVSGFFTSSIVNSKVGKKFFSLLPGEIVLASLDGFN 360

Query: 418 KVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQA 477
           KVCDAVEVAG+NVMSTTSVVTTGLVS RYGEQAA  T+EGL AAGHA GTAWAVFKIR+A
Sbjct: 361 KVCDAVEVAGKNVMSTTSVVTTGLVSQRYGEQAAHVTHEGLGAAGHAIGTAWAVFKIRKA 420

Query: 478 FNPKSAFKPTSLAKAAVKANAAELKAKQSK 507
            NPKSAFKPT LAKAA +AN+A+LK KQ+K
Sbjct: 421 LNPKSAFKPTKLAKAAAEANSAKLKTKQAK 450




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078263|ref|XP_002305512.1| predicted protein [Populus trichocarpa] gi|222848476|gb|EEE86023.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|198400319|gb|ACH87168.1| senescence-related protein [Camellia sinensis] Back     alignment and taxonomy information
>gi|449489654|ref|XP_004158377.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101218079 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224105177|ref|XP_002313715.1| predicted protein [Populus trichocarpa] gi|222850123|gb|EEE87670.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458604|ref|XP_004147037.1| PREDICTED: uncharacterized protein LOC101218079 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538301|ref|XP_003537642.1| PREDICTED: uncharacterized protein LOC100805032 [Glycine max] Back     alignment and taxonomy information
>gi|356495352|ref|XP_003516542.1| PREDICTED: uncharacterized protein LOC100804971 [Glycine max] Back     alignment and taxonomy information
>gi|255577538|ref|XP_002529647.1| conserved hypothetical protein [Ricinus communis] gi|223530873|gb|EEF32734.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297836496|ref|XP_002886130.1| early-responsive to dehydration 7 [Arabidopsis lyrata subsp. lyrata] gi|297331970|gb|EFH62389.1| early-responsive to dehydration 7 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query509
TAIR|locus:505006562448 AT4G35985 [Arabidopsis thalian 0.813 0.924 0.552 1.6e-118
TAIR|locus:2827800452 ERD7 "AT2G17840" [Arabidopsis 0.724 0.816 0.581 1.5e-113
TAIR|locus:2081013463 AT3G51250 "AT3G51250" [Arabido 0.548 0.602 0.576 1.2e-83
TAIR|locus:2089940374 AT3G21600 "AT3G21600" [Arabido 0.387 0.526 0.370 8.7e-51
TAIR|locus:2089925198 AT3G21590 "AT3G21590" [Arabido 0.243 0.626 0.333 7.6e-14
TAIR|locus:505006562 AT4G35985 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 237/429 (55%), Positives = 305/429 (71%)

Query:    72 SSNPSKALYPEVDLXXXXX---XXXXXXXXXXXXXXXXXVDMKDMAENLFPEDDAVSHIT 128
             S+ P K LYP VD                          +++ D+  N+FP+  A    +
Sbjct:     4 SATPPK-LYPTVDTSTTVAPLPKSSSSSSSTNNNNLYPSINVNDLVNNIFPDPTASD--S 60

Query:   129 ANAPP--SEHVLVKIPGAIVHLIEREQSVELASGELYIVSLSQGDNVVAVFARVGDEIQW 186
             A+APP  +E V++ I GA+VHLI++  SVELA G+L I+ L QGD  VAVFARVGDEIQW
Sbjct:    61 ASAPPLATEEVILTIHGAMVHLIDKSYSVELACGDLEILRLVQGDITVAVFARVGDEIQW 120

Query:   187 PLAKDEPAVKLDDSHYFFTLR-VPENGSLE--TDQVHHEVLNYGLTIATKGQKHLLKELD 243
             PL KDEPAVK+D+SHYFF+LR V E+ S +   ++  +E+LNYGLT+A+KGQ+ +L++LD
Sbjct:   121 PLTKDEPAVKVDESHYFFSLRPVKESESSDHSVNETENEMLNYGLTMASKGQEPMLEKLD 180

Query:   244 KVLETYSCFSVQ-KVKNMGNWEMVA-KEMSPEELKSAENRELMGKSSGAYWTALAPNVED 301
             K+L  YS F+ + K K     ++ A KE SPEELK  + ++++ K   AYWT LAPNVED
Sbjct:   181 KILADYSSFTAEEKQKEENVLDLTAAKETSPEELKG-KRKKMVEKQCTAYWTTLAPNVED 239

Query:   302 YSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQS-EISPDTIKRIK 360
             YSG  A++IAAGSGQLIKGILWCGD+T+D L WGN F++K++    +  ++SP T+KR+K
Sbjct:   240 YSGVAAKLIAAGSGQLIKGILWCGDLTMDRLMWGNDFMKKKLSKAEKERQVSPGTLKRLK 299

Query:   361 RVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVC 420
             RVKK+TKM+EKVA G+LSGVVKVSGFF+  ++NSK G+K F LLPGE+VLATLDGFNKVC
Sbjct:   300 RVKKMTKMTEKVANGVLSGVVKVSGFFSSSVINSKAGQKLFGLLPGEMVLATLDGFNKVC 359

Query:   421 DAVEVAGRNXXXXXXXXXXXXXXDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNP 480
             DAVEVAGR+               +YG + A+ATNEGL AAGHAFGTAW VFKIRQA NP
Sbjct:   360 DAVEVAGRHVMKTTSDVTTEIVDHKYGAKTAQATNEGLSAAGHAFGTAWTVFKIRQALNP 419

Query:   481 KSAFKPTSL 489
             KSA KP+SL
Sbjct:   420 KSAMKPSSL 428




GO:0005737 "cytoplasm" evidence=ISM
TAIR|locus:2827800 ERD7 "AT2G17840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081013 AT3G51250 "AT3G51250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089940 AT3G21600 "AT3G21600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089925 AT3G21590 "AT3G21590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_IV1449
hypothetical protein (446 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
pfam06911181 pfam06911, Senescence, Senescence-associated prote 5e-53
>gnl|CDD|219226 pfam06911, Senescence, Senescence-associated protein Back     alignment and domain information
 Score =  177 bits (450), Expect = 5e-53
 Identities = 67/180 (37%), Positives = 105/180 (58%), Gaps = 10/180 (5%)

Query: 310 IAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMG-SGSQSEISPDTIKRIKRVKKLTKM 368
           IA+G+G + +GI+W  + T  G++ G  +L  ++  +    E+SP T +R++RVKKL+K 
Sbjct: 2   IASGAGSISRGIVWGSEYTAKGIQSGGEYLISKISPTEKPVEVSPSTKERLRRVKKLSKA 61

Query: 369 SEKVATGILSGVVKVSGFFTGPIVNSKVGKKFFSLLPGE--------IVLATLDGFNKVC 420
           + KV+  +L+GV KV+G     + NS  GKK      GE        + LA+LD F+ V 
Sbjct: 62  TAKVSKSVLNGVGKVAGNVGSSLANSVAGKKKGKDGKGEPNFDGALGVALASLDAFSTVL 121

Query: 421 DAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKI-RQAFN 479
           D +E A +NV+ + S  TT +V  +YGE+A + T + L  AG+   TAW V K+ R+A  
Sbjct: 122 DGLEEAAKNVLKSLSDATTKVVEHKYGEEAGEVTQDTLGTAGNVGLTAWNVNKVGRKALL 181


This family contains a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the flower opens, and it is believed that senescence proteins produced around that time have a role in this program. This family extends to the higher vertebrates where the full-length protein is often a Spartin, associated with mitochondrial membranes and transportation along microtubules. Length = 181

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 509
KOG2709560 consensus Uncharacterized conserved protein [Funct 100.0
PF06911179 Senescence: Senescence-associated protein; InterPr 100.0
PF12634145 Inp1: Inheritance of peroxisomes protein 1; InterP 98.32
>KOG2709 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=2.4e-64  Score=519.04  Aligned_cols=335  Identities=22%  Similarity=0.277  Sum_probs=289.9

Q ss_pred             cceEEEec-CeEEEEecCC-ccccccccceEEEEEecCCcc-----eEEEEEecCccccccCCC-CCeeeecCceeEEec
Q 010497          135 EHVLVKIP-GAIVHLIERE-QSVELASGELYIVSLSQGDNV-----VAVFARVGDEIQWPLAKD-EPAVKLDDSHYFFTL  206 (509)
Q Consensus       135 eE~Ll~IP-Gvql~lId~~-~Sv~la~G~L~Ivr~~q~~~~-----~a~flqVGD~~qwPL~kD-~PVlKld~g~Y~Fsl  206 (509)
                      ..+|+.|| |+|||+|++. ++.|.+|+||+|+||.|...+     ..+|+|||| |+|||+++ +||++|..|+|||++
T Consensus       181 ~g~i~~ip~gvq~f~V~~~~~~ap~~p~yL~i~rF~q~S~~~~~n~~~af~qv~~-WlYPLvp~~tpvl~~e~GAy~fpd  259 (560)
T KOG2709|consen  181 AGLIYFIPEGVQLFTVDGEKTTAPTAPTYLQILRFPQPSDGGASNDTLAFMQVGP-WLYPLVPAKTPVLRNEFGAYLFPD  259 (560)
T ss_pred             cceEEEccCCeEEEEeccccccCCCCCceeEEEEecCCCCCccccCCcccceecc-cccccCcccCcceecccceEecCC
Confidence            34899999 9999999999 889999999999999988554     358999999 99999999 999999999999977


Q ss_pred             cCCCCCCCcccccCCcceeEEEEeeCCcch-HHHHHHHHHHhhcCcccccccccCCcchhhhhhcChhhhhhhhhhhccc
Q 010497          207 RVPENGSLETDQVHHEVLNYGLTIATKGQK-HLLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMG  285 (509)
Q Consensus       207 ~~P~~~~~~~d~~~~~~lsYGVtlss~~~~-~~l~~Ld~iL~q~S~Fsvq~~~~~~~~~~~~~~~~~~~~~g~~kk~~~e  285 (509)
                      ++|+.+          +..+||+|++++++ ..+++|+.+|+.++||..+....  .++         .++...|     
T Consensus       260 ~~~q~p----------g~~vgi~Lsse~Q~~r~~~Ele~~~q~f~D~le~a~~~--tv~---------ql~~~n~-----  313 (560)
T KOG2709|consen  260 PTPQNP----------GMTVGILLSSEIQERRLIEELEIVLQEFTDFLEQAEPS--TVL---------QLEEKNR-----  313 (560)
T ss_pred             CcccCC----------CCEEEEEEcchhhhhhhHHHHHHHHHHHHHHHHhhCCc--cee---------ecccccc-----
Confidence            777742          57779999999965 46889999999999998775321  111         0000000     


Q ss_pred             cCccccccccCCCcccchHHHHHHHHhhhhhhhhheeechhhhhhhhhccccccccccCCCCC-cccChHHHHHHHHHhh
Q 010497          286 KSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQ-SEISPDTIKRIKRVKK  364 (509)
Q Consensus       286 ~~~~~~W~~~AP~VedyS~kvAk~Ia~Gs~~IsrGIv~~se~~~~~IqkGa~~lr~ri~P~~k-~~VsP~t~k~Ikrakk  364 (509)
                           +---+|-.---||++|++.|++|++||+||+++|++.++++|+++++++|.++.|+++ ++|||.+.+++.++++
T Consensus       314 -----qRaglAsDTvS~Se~Vs~~iisga~~iawglv~gae~tg~~v~~~~~~~r~~~~p~~kp~qVsp~V~~sv~~a~k  388 (560)
T KOG2709|consen  314 -----QRAGLASDTVSISETVSNFIISGAQKIAWGLVTGAERTGSRVEDNGEQYRTTLIPTDKPMQVSPVVKGSVVYAHK  388 (560)
T ss_pred             -----ccccccccccchHHHHHHHHhhhhhHhhhhhccchhhhhhHHhcCcHhHhhhcCccCCCcccCccccceEEEeee
Confidence                 0001111222399999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             hhhhHHHHHHHHhcceeeeecccccccccC--ccCcccc-----------ccCch--hHHhhhhhhHHHHHHHHHHHHHH
Q 010497          365 LTKMSEKVATGILSGVVKVSGFFTGPIVNS--KVGKKFF-----------SLLPG--EIVLATLDGFNKVCDAVEVAGRN  429 (509)
Q Consensus       365 ~S~~a~kvS~~ll~gV~~Vag~vga~la~s--K~Gkk~~-----------s~~pG--eV~~aSL~aFstV~DalE~AgK~  429 (509)
                      .|..+++++..+.++|+.++.+||.-++++  |+|.|+.           +.+.|  +|+.+++.||+|||+|||+++|+
T Consensus       389 ~Th~aa~~~~~l~~~v~T~~~~VG~~laph~kkqgskl~q~~fg~dke~~s~~~Gam~iaag~V~GvsTVw~gLE~~ak~  468 (560)
T KOG2709|consen  389 GTHKAAAKEEILKNIVDTKMDKVGDMLAPHGKKQGSKLAQRRFGDDKESGSLVSGAMEIAAGGVTGVSTVWMGLEDGAKH  468 (560)
T ss_pred             ccchhhHHHHHHHhhhhHHHHHHHHhhhhhhHHHhhHHHHHhhcCCccCCCcccceeeeecccccchhHHHhhhhHHHHH
Confidence            999999999999999999999999999875  6676654           34566  59999999999999999999999


Q ss_pred             HhhcccchhhhhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCcccccchHHHHHHHHHHHHHhhhhcc
Q 010497          430 VMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPTSLAKAAVKANAAELKAKQSK  507 (509)
Q Consensus       430 ll~StS~aTt~vV~HKYGeeAGeaT~dal~aAGhv~~TAwnv~kIrka~npKs~lKpts~aK~aaka~~~~~k~~~~~  507 (509)
                      |++++|+.|+++|+||||++||++|||+|++||||+.+|+||++|+    ||+++|++  |++|+++++.+||.-..|
T Consensus       469 l~~sis~~tVq~v~~KYG~~ag~~thha~d~agnv~v~a~n~n~ig----pk~vakkm--a~~tG~~~vsDykr~~rk  540 (560)
T KOG2709|consen  469 LCRSISNQTVQNVKLKYGDDAGDTTHHALDAAGNVTVAAANLNDIG----PKSVAKKM--ARKTGIQMVSDYKRHSRK  540 (560)
T ss_pred             HHHhhhHhHhhHhhhhhcccccchhhhhhhhccceEEEeehhcccC----HHHHHHHH--HHHhhHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999988    99999987  999999999999754433



>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length Back     alignment and domain information
>PF12634 Inp1: Inheritance of peroxisomes protein 1; InterPro: IPR024758 Inp1 is a peroxisomal membrane protein that binds Pex25p, Pex30p, and Vps1p, all of which are involved in controlling peroxisome division Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query509
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 69/495 (13%), Positives = 136/495 (27%), Gaps = 177/495 (35%)

Query: 109 DMKDMAENLFPEDDAVSHITANAPPSEHVLVKIPGAIVHLIEREQSVELASGELYIVSLS 168
           D++DM +++  +++ + HI           +          +           L+   LS
Sbjct: 37  DVQDMPKSILSKEE-IDHI-----------IMSK-------DAVSGTLR----LFWTLLS 73

Query: 169 QGDNVVAVFARVGDEIQ----W---PLAKD--EPAVKLD-----------DSHYFFTLRV 208
           + + +V  F  V + ++    +   P+  +  +P++              D+  F    V
Sbjct: 74  KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 209 PE-------NGSLETDQVHHEVLNYGLTIATKGQ-KHLLKELDKVLETYSCFSVQKVKNM 260
                      +L   +    VL  G+     G  K  +      L+    + VQ   + 
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWV-----ALDVCLSYKVQCKMDF 182

Query: 261 G-NWEMVAKEMSPEE-LKSAENR----ELMGKSSGAYWTALAPNVEDYSGSVARMIAAGS 314
              W  +    SPE  L+  +      +    S   + + +   +      + R++ +  
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 315 GQ--LIKGIL---W-----------C--------------------GDVTVDGLKWG--- 335
            +  L+  +L               C                      +++D        
Sbjct: 243 YENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 336 ---NGFLRKRMGSGSQS------EISP-----------DTIKRIKRVKKLTKMSEKVATG 375
                 L K +    Q         +P           D +      K +    +K+ T 
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC--DKLTT- 357

Query: 376 ILSGVVKVSGFFTGPIVNSKVGKKFFSLL---------PGEIVLATL----------DGF 416
           I+   + V        +     +K F  L         P  I+L+ +             
Sbjct: 358 IIESSLNV--------LEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVV 408

Query: 417 NKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQ 476
           NK+     V  +   ST S      +   Y E   K  NE    A H          I  
Sbjct: 409 NKLHKYSLVEKQPKESTIS------IPSIYLELKVKLENE---YALHR--------SIVD 451

Query: 477 AFNPKSAFKPTSLAK 491
            +N    F    L  
Sbjct: 452 HYNIPKTFDSDDLIP 466


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00