Citrus Sinensis ID: 010547
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | 2.2.26 [Sep-21-2011] | |||||||
| Q82LL4 | 445 | Allantoinase OS=Streptomy | yes | no | 0.832 | 0.948 | 0.423 | 4e-90 | |
| Q54SV3 | 649 | Probable allantoinase 1 O | yes | no | 0.857 | 0.670 | 0.398 | 1e-89 | |
| Q9RKU5 | 445 | Allantoinase OS=Streptomy | yes | no | 0.834 | 0.950 | 0.425 | 5e-89 | |
| P32375 | 460 | Allantoinase OS=Saccharom | yes | no | 0.757 | 0.834 | 0.420 | 7e-85 | |
| Q55C91 | 510 | Probable allantoinase 2 O | no | no | 0.873 | 0.868 | 0.386 | 3e-83 | |
| P40757 | 484 | Allantoinase, mitochondri | N/A | no | 0.715 | 0.75 | 0.428 | 5e-77 | |
| Q9RV76 | 448 | Allantoinase OS=Deinococc | yes | no | 0.830 | 0.939 | 0.367 | 3e-73 | |
| B7N966 | 453 | Allantoinase OS=Escherich | yes | no | 0.763 | 0.854 | 0.362 | 2e-70 | |
| Q57S43 | 453 | Allantoinase OS=Salmonell | yes | no | 0.790 | 0.885 | 0.358 | 2e-70 | |
| A9MW45 | 453 | Allantoinase OS=Salmonell | yes | no | 0.751 | 0.841 | 0.370 | 3e-70 |
| >sp|Q82LL4|ALLB_STRAW Allantoinase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=allB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 332 bits (851), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 190/449 (42%), Positives = 271/449 (60%), Gaps = 27/449 (6%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEE-DWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
L S R++TP+G AV + G I +++ + + P ++ + D G+ V++PGL+D H
Sbjct: 8 LRSTRVITPEGTRPAAVAVAAGKITAVLPHDAEVPAGAR---LEDLGDDVLLPGLVDTHV 64
Query: 106 HLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165
H++DPGRT WEGF + T+AAAAGGITTL+DMPLNS P T + L+ K D A + ++DV
Sbjct: 65 HVNDPGRTHWEGFWTATRAAAAGGITTLVDMPLNSLPPTTTVGNLRTKRDVAADKAHIDV 124
Query: 166 GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR 225
GFWGG +P+N + L L +AGV G K+F+ PSG+++FP + + ++ +A +
Sbjct: 125 GFWGGALPDNVKD---LRPLHDAGVFGFKAFLSPSGVDEFPELDQERLARSMAEIAGFGG 181
Query: 226 PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285
L+VHAE H+ R Y+ +L +RP E+ AI LL AK
Sbjct: 182 LLIVHAE----DPHHLAAAPQRGGPR-YTDFLASRPRDAEDTAIANLLAQAKRL------ 230
Query: 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 345
A +H++HLS +S +L L+ AK G +TVETCPHYL +AEE+PDG + FKC PPIR
Sbjct: 231 -NARVHVLHLS-SSDALPLIAGAKAEGVRVTVETCPHYLTLTAEEVPDGASEFKCCPPIR 288
Query: 346 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405
+AAN++ LW+AL DG ID + +DHSP+ +LK D F AWGGIS LQ LP W+
Sbjct: 289 EAANQDLLWQALADGTIDCVVTDHSPSTADLKTDD---FATAWGGISGLQLSLPAIWTEA 345
Query: 406 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465
R+ G +LE + W S R A+L G KGAI G AD V P+ F +D P ++H
Sbjct: 346 RRRGHSLEDVVRWMSARTARLVGLAQKGAIEAGRDADFAVLAPDETFTVD---PAALQHR 402
Query: 466 S-ISAYLGRRLSGKVLATISRGNLVYKEG 493
+ ++AY G+ LSG V +T RG + +G
Sbjct: 403 NRVTAYAGKTLSGVVKSTWLRGERIMADG 431
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Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Streptomyces avermitilis (taxid: 33903) EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 5 |
| >sp|Q54SV3|ALN1_DICDI Probable allantoinase 1 OS=Dictyostelium discoideum GN=allB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/462 (39%), Positives = 279/462 (60%), Gaps = 27/462 (5%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYG--EAVIMPGLIDVH 104
+ K++V + ++ IK G II I +D+ K V + VIM GL+D H
Sbjct: 10 IKGKKVVINGEIKPASILIKNGIIIDI---KDYSSEIKEEHEVLIEEEKLVIMGGLVDSH 66
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164
H+++PGRTEWEGF S T AAA+GG+TT+IDMPLNS P T + E L+ K+++ ++ VD
Sbjct: 67 VHINEPGRTEWEGFLSATSAAASGGVTTIIDMPLNSSPVTTTFENLQTKIESMPGKLRVD 126
Query: 165 VGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224
VG GG++P N+ S + +L GV+G KSF+ SGI++FP I+E ++V+ + K
Sbjct: 127 VGLLGGIIPGNSSEISRM--VLEGGVVGFKSFLVHSGIDEFPHVKEDDIQEAMNVMKKLK 184
Query: 225 RP-------LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 276
++ HAE+E+ E +L+ + D + Y T+LK+RP E AI +++ +
Sbjct: 185 DEQGGRDVVMMFHAEIEEPIKEATERLQRENADPKLYDTFLKSRPRVSENIAIDKVIELT 244
Query: 277 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTN-GDSITVETCPHYLAFSAEEIPDGD 335
K HIVHLS +S +++ + EA N G IT ET HYL F +E++P G+
Sbjct: 245 KKNMI-------KTHIVHLS-SSDAIEAIHEAVHNDGVPITAETTYHYLYFESEQVPYGN 296
Query: 336 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 395
T +KC PP+R++ NK+ LW+A+ +G I+++ SDHSP +LKL+++G+F+KAWGGISSLQ
Sbjct: 297 TLYKCCPPVRESENKDLLWKAVTNGTINIIVSDHSPCTLDLKLIEQGDFMKAWGGISSLQ 356
Query: 396 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFEL 454
LP+ W+ K GV L +L+ + S+ P++L G KG+I IG AD V+W+PE F +
Sbjct: 357 LGLPIIWTEASKRGVPLAKLSEYMSDAPSRLVGLNDRKGSIKIGRDADFVIWDPEESFTV 416
Query: 455 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496
D + M S Y G +L G V TI RGN ++ +G+
Sbjct: 417 --DQGLLMVKNKNSPYHGEKLLGVVHHTILRGNKIFSKGDQT 456
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Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q9RKU5|ALLB_STRCO Allantoinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (842), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 191/449 (42%), Positives = 272/449 (60%), Gaps = 26/449 (5%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
L S R++TP+G + +V + G I+ V D P + ++ D G+ V++PGL+D H H
Sbjct: 8 LRSTRVITPEGTRAASVAVT-GEKITAVLPYDAPVPAG-ARLEDVGDHVVLPGLVDTHVH 65
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166
++DPGRTEWEGF + T+AAAAGGITTL+DMPLNS P T + + L+ K + A + ++DVG
Sbjct: 66 VNDPGRTEWEGFWTATRAAAAGGITTLVDMPLNSIPPTTTVDNLRTKREVAADKAHIDVG 125
Query: 167 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
FWGG +P+N + L L AGV G K+F+ PSG+++FP + + L+ +A +
Sbjct: 126 FWGGALPDNVKD---LRPLHEAGVFGFKAFLSPSGVDEFPHLDQEQLARSLAEIAAFDGL 182
Query: 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
L+VHAE + H Y+ +L +RP E+ AI LL AK
Sbjct: 183 LIVHAE-----DPHHLAAAPQQGGPKYTHFLASRPRDAEDTAIATLLAQAKRF------- 230
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
A +H++HLS +S +L L+ EA+ +G +TVETCPHYL +AEE+PDG + FKC PPIR+
Sbjct: 231 NARVHVLHLS-SSDALPLIAEARADGVRVTVETCPHYLTLTAEEVPDGASEFKCCPPIRE 289
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
AAN++ LW+AL DG ID + +DHSP+ +LK D F AWGGI+ LQ LP W+ R
Sbjct: 290 AANQDLLWQALADGTIDCVVTDHSPSTADLKTDD---FATAWGGIAGLQLSLPAMWTAAR 346
Query: 407 KYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465
G+ LE + W SER A L G KGAIA G+ AD V P+ F +D P ++H
Sbjct: 347 GRGLGLEDVVRWMSERTAALVGLDARKGAIAPGHDADFAVLAPDETFTVD---PAALQHR 403
Query: 466 S-ISAYLGRRLSGKVLATISRGNLVYKEG 493
+ ++AY G+ L G V +T RG + +G
Sbjct: 404 NRVTAYAGKTLYGVVKSTWLRGERIVADG 432
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Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|P32375|ALN_YEAST Allantoinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL1 PE=3 SV=2 | Back alignment and function description |
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Score = 315 bits (806), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 249/402 (61%), Gaps = 18/402 (4%)
Query: 94 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 153
I+PGL+D H HL++PGRT WEGF +GT+AA +GG+TT++DMPLN+ P T + E ++K
Sbjct: 60 CTILPGLVDSHVHLNEPGRTSWEGFETGTQAAISGGVTTVVDMPLNAIPPTTNVENFRIK 119
Query: 154 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 213
++AAE +++ DVGFWGGLVP +N L L+ AGV G K F+ SG+ +FP +I
Sbjct: 120 LEAAEGQMWCDVGFWGGLVP---HNLPDLIPLVKAGVRGFKGFLLDSGVEEFPPIGKEYI 176
Query: 214 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 273
+E L VLA ++ HAE+ K E + E R YS++L +RP S+E AI +L
Sbjct: 177 EEALKVLAEEDTMMMFHAELPKAHEDQQQPEQ---SHREYSSFLSSRPDSFEIDAINLIL 233
Query: 274 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333
+ +GP +HIVHL+ + ++ L+ +A+ +G +T ETC HYL +AE+IPD
Sbjct: 234 ECLR--ARNGPV--PPVHIVHLA-SMKAIPLIRKARASGLPVTTETCFHYLCIAAEQIPD 288
Query: 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393
G T FKC PPIR +N++ LW+AL +G I + SDHSP PELK L +G+F +WGGI+S
Sbjct: 289 GATYFKCCPPIRSESNRQGLWDALREGVIGSVVSDHSPCTPELKNLQKGDFFDSWGGIAS 348
Query: 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEF 452
+ LP+ ++ G +L + +W + + G KG IA G ADLVV++ ++
Sbjct: 349 VGLGLPLMFT----QGCSLVDIVTWCCKNTSHQVGLSHQKGTIAPGYDADLVVFDTASKH 404
Query: 453 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
++ N V+ K+ ++AY G + G VL TI RG +VY N
Sbjct: 405 KISNSS-VYFKN-KLTAYNGMTVKGTVLKTILRGQVVYTNAN 444
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Utilization of purines as secondary nitrogen sources, when primary sources are limiting. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q55C91|ALN2_DICDI Probable allantoinase 2 OS=Dictyostelium discoideum GN=allB2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 191/494 (38%), Positives = 281/494 (56%), Gaps = 51/494 (10%)
Query: 39 LLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYG------ 92
L + + L++K VI G I GN+I + RN KT + DY
Sbjct: 12 FLLFQNFVLSAKNDDNKLKVIRGRNVIYNGNVIPL---SILIRNGKTIGIKDYSFNPKKL 68
Query: 93 -----------------EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID 135
+ +IM GL+D H H+++PGRTEWEGF S T AAAAGG+TT++D
Sbjct: 69 NENYEILYDDRECNNNEDFIIMGGLVDSHVHVNEPGRTEWEGFESATSAAAAGGVTTIVD 128
Query: 136 MPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
MPLNS P T S + L K+++ + ++ VDVG GG+VP N+ + +L GVLG KS
Sbjct: 129 MPLNSSPVTTSFKNLLDKIESMKGKLRVDVGLLGGIVPGNSKEIKKM--VLQGGVLGFKS 186
Query: 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRP-------LLVHAEMEKG-SERHVKLEDDT 247
F+ PSGI++FP N + I+E ++ + K ++ HAE+E+ E V+L+++
Sbjct: 187 FLLPSGIDEFPPVNENDIQEAMNEMKLLKCQYNNSDVIMMFHAEVEEPIKEATVRLKNEN 246
Query: 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLME 307
D + Y TYL +RP E AI +L+ + + + HIVHLS +S S++ + E
Sbjct: 247 ADPKLYKTYLDSRPKISENQAISKLIDITRQNQI------VSTHIVHLS-SSESIEQIRE 299
Query: 308 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367
A G I+ ET +YL ++E +P G+T FK APP+R+ NKE LW A+++G I ++ S
Sbjct: 300 AMDQGVPISAETTYNYLHLTSESVPYGNTLFKSAPPVREHENKELLWNAIINGTIKLIVS 359
Query: 368 DHSPTVPELKLLDE-----GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 422
DHSP LK L E G+FLKAWGGISSL+ LP+ W+ + G+ + QL+ W S
Sbjct: 360 DHSPCTINLKQLKEDNQSIGDFLKAWGGISSLELGLPIIWTECKNRGIPITQLSEWLSNG 419
Query: 423 PAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 481
P+KL G KG+I IG AD V++ P F + N+ + +K+ SAY G +L G V
Sbjct: 420 PSKLVGLNDRKGSIEIGRDADFVIFNPNESF-IVNEKKLFLKN-KFSAYNGEKLFGVVYE 477
Query: 482 TISRGNLVYKEGNH 495
TI RGN ++K+G++
Sbjct: 478 TILRGNSIFKKGDN 491
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Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|P40757|ALN_LITCT Allantoinase, mitochondrial OS=Lithobates catesbeiana GN=ALN PE=1 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 164/383 (42%), Positives = 234/383 (61%), Gaps = 20/383 (5%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHA 105
+ SKR++ + S + I +G I S+++ W ++ +G +++D G+ V+M G+ID H
Sbjct: 21 IRSKRVIQANTISSCDIIISDGKISSVLA---WGKHVTSGAKLLDVGDLVVMAGIIDPHV 77
Query: 106 HLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165
H+++PGRT+WEG+ + T AAAAGGIT ++DMPLNS P T S K+ AA+++ YVDV
Sbjct: 78 HVNEPGRTDWEGYRTATLAAAAGGITAIVDMPLNSLPPTTSVTNFHTKLQAAKRQCYVDV 137
Query: 166 GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR 225
FWGG++P+N L +L AGV G K F+ SG+ +FP + + + +S L
Sbjct: 138 AFWGGVIPDNQVE---LIPMLQAGVAGFKCFLINSGVPEFPHVSVTDLHTAMSELQGTNS 194
Query: 226 PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285
LL HAE+E K + D+ Y T+L +RP E AA++ + + + +
Sbjct: 195 VLLFHAELEIA-----KPAPEIGDSTLYQTFLDSRPDDMEIAAVQLVADLCQQYK----- 244
Query: 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 345
HIVHLS A S L ++ +AK G +TVET HYL+ S+E IP G T FKC PP+R
Sbjct: 245 --VRCHIVHLSSAQS-LTIIRKAKEAGAPLTVETTHHYLSLSSEHIPPGATYFKCCPPVR 301
Query: 346 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405
NKE LW AL+ GHIDM+ SDHSP P+LKLL EG+++KAWGGISSLQF LP+ W+
Sbjct: 302 GHRNKEALWNALLQGHIDMVVSDHSPCTPDLKLLKEGDYMKAWGGISSLQFGLPLFWTSA 361
Query: 406 RKYGVTLEQLASWWSERPAKLAG 428
R G +L ++ S AKL G
Sbjct: 362 RTRGFSLTDVSQLLSSNTAKLCG 384
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Lithobates catesbeiana (taxid: 8400) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q9RV76|ALLB_DEIRA Allantoinase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 238/444 (53%), Gaps = 23/444 (5%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
+VTP+G + I G I + E P Q +D + PG++D H HL++PG
Sbjct: 12 LVTPEGERRADLGIVGGQIAELTDEIATP----AAQTLDVSGLHVFPGVLDDHVHLNEPG 67
Query: 112 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL 171
RT WEGF +GT+A AAGG T+ +DMPLNS P ++ E + K E++ +D G WGGL
Sbjct: 68 RTHWEGFETGTQALAAGGATSFLDMPLNSSPPVLTRERFEDKARLGEEKSLIDFGLWGGL 127
Query: 172 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231
P N L+ L GV+GLK+FM SG+++FP + + EG+ R+ + HA
Sbjct: 128 TP---LNLDQLDDLAECGVIGLKAFMSHSGLDEFPAADDLTLYEGMRTAKRHGLVVATHA 184
Query: 232 EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 291
E + + R + YL++RP E A++ L A+DT GA LH
Sbjct: 185 ESNEFTRRLTETA-RAQGKSGVRDYLESRPVVTELEAVQRALLFAQDT-------GAALH 236
Query: 292 IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 351
+VH+S + +++ L E K G +T+ETCPHYL F+ E++ KCAPP+RD A +E
Sbjct: 237 LVHVS-SGAAVALAYEGKQKGIDVTIETCPHYLHFTGEDVERVGAALKCAPPLRDPAVQE 295
Query: 352 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGV 410
+LW L+ GHID + SDHSP P++K + +F WGGIS Q L V G + G+
Sbjct: 296 ELWRELLAGHIDTVGSDHSPAPPDMKTSE--DFFSLWGGISGAQSTLNVMLEDGYAQRGL 353
Query: 411 TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 470
LE +A+ + PA+ G KG +A+G AD + +F LD + ++P Y
Sbjct: 354 PLEIIAALLALNPAQRFGLPQKGRLAVGADADFALVALGEKFTLDTLYDRWQQNP----Y 409
Query: 471 LGRRLSGKVLATISRGNLVYKEGN 494
G+ G+V AT RG VY+ G
Sbjct: 410 RGQSFQGRVHATYLRGQPVYQNGE 433
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Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|B7N966|ALLB_ECOLU Allantoinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/427 (36%), Positives = 226/427 (52%), Gaps = 40/427 (9%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 146
+V+D V+ PG++D H H+ +PGR+ WEG+ +GT+AAA GGITT+I+MPLN P+T+
Sbjct: 42 EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVD 101
Query: 147 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----I 202
+++LK DAA+ ++ +D GGLV +YN L L GV+G K F+ G
Sbjct: 102 RASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCGDRGID 158
Query: 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEM---------EKGSERHVKLEDDTLDTRSY 253
NDF N +G L +P+LVH E E SE V D
Sbjct: 159 NDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKSEGRVTAHD-------- 210
Query: 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313
Y+ +RP E AIR +L +AK G LHI H+S + ++ + A+ G
Sbjct: 211 --YVASRPVFTEVEAIRRVLYLAK-------VAGCRLHICHIS-SPEGVEEVTRARQEGQ 260
Query: 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373
+T E+CPHY E+ + T KC+PPIRD N++ +WE L +G ID L SDHSP
Sbjct: 261 DVTCESCPHYFVLDTEQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCP 320
Query: 374 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSK 432
PE+K GN ++AWGGI+ LQ + V + +K G++L + A + G K
Sbjct: 321 PEMK---AGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQK 377
Query: 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
G IA G AD V +P + + L ND + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 378 GRIAPGKDADFVFIQPNSSYVLTNDD-LEYRH-KVSPYVGRTIGARITKTILRGDVIYDI 435
Query: 493 GNHAPAA 499
P A
Sbjct: 436 EQGFPVA 442
|
Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) (taxid: 585056) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q57S43|ALLB_SALCH Allantoinase OS=Salmonella choleraesuis (strain SC-B67) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/438 (35%), Positives = 237/438 (54%), Gaps = 37/438 (8%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
+ ++ G I +I + +N V+D ++ PG++D H H+ +PGRT WEG+ +GT
Sbjct: 23 IAVQGGKIAAIGENLEEAKN-----VLDATGLIVSPGMVDAHTHISEPGRTHWEGYETGT 77
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
+AAA GGITT+I+MPLN P+T+ ET++LK DAA+ ++ +D GGLV +YN L
Sbjct: 78 RAAAKGGITTMIEMPLNQLPATVDRETIELKFDAAKGKLTIDAAQLGGLV---SYNLDRL 134
Query: 183 EALLNAGVLGLKSFMCPSG----INDFPMTNASHIKEGLSVLARYKRPLLVHAEM----- 233
L GV+G K F+ G NDF N +G L + +LVH E
Sbjct: 135 HELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGEMDQTVLVHCENALICD 194
Query: 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 293
E G E K E + Y+ +RP E AIR +L +AK A G LH+
Sbjct: 195 ELGEE--AKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAK-------AAGCRLHVC 241
Query: 294 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 353
H+S + ++ + A+ G +T E+CPHY ++ + T KC+PPIRD N++ +
Sbjct: 242 HIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDQENQKGM 300
Query: 354 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 412
WE L +G ID L SDHSP PE+K GN ++AWGGI+ LQ + V + +K G++L
Sbjct: 301 WEKLFNGEIDCLVSDHSPCPPEMK---AGNIMQAWGGIAGLQNCMDVMFDEAVQKRGMSL 357
Query: 413 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 472
+ A + G KG IA G ADLV +P++ + L N+ + +H +S Y+G
Sbjct: 358 PMFGKLMATNAADIFGLKHKGRIAPGKDADLVFIQPDSSYVLKNED-LEYRH-KVSPYVG 415
Query: 473 RRLSGKVLATISRGNLVY 490
R + ++ TI RG+++Y
Sbjct: 416 RTIGARITKTILRGDVIY 433
|
Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Salmonella choleraesuis (strain SC-B67) (taxid: 321314) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|A9MW45|ALLB_SALPB Allantoinase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/413 (37%), Positives = 227/413 (54%), Gaps = 32/413 (7%)
Query: 88 VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST 147
V+D ++ PG++D H H+ +PGRT WEG+ +GT+AAA GGITT+I+MPLN P+T+
Sbjct: 43 VLDATGLIVSPGMVDAHTHISEPGRTHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDR 102
Query: 148 ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----IN 203
ET++LK DAA+ ++ +D GGLV +YN L L GV+G K F+ G N
Sbjct: 103 ETIELKFDAAKGKLTIDAAQLGGLV---SYNLDRLHELDEVGVVGFKCFVATCGDRGIDN 159
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYLK 258
DF N +G L + +LVH E E G E K E + Y+
Sbjct: 160 DFRDVNDWQFYKGAQKLGEMDQTVLVHCENALICDELGEE--AKREGRV----TAHDYVA 213
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
+RP E AIR +L +AK A G LH+ H+S + ++ + A+ G +T E
Sbjct: 214 SRPVFTEVEAIRRVLYLAK-------AAGCRLHVCHIS-SPEGVEEVTRARQEGQDVTCE 265
Query: 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378
+CPHY ++ + T KC+PPIRD N++ +WE L +G ID L SDHSP PE+K
Sbjct: 266 SCPHYFVLDTDQFEEIGTLAKCSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMK- 324
Query: 379 LDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 437
GN ++AWGGI+ LQ + V + +K G++L + A + G KG IA
Sbjct: 325 --AGNIMQAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLKHKGRIAP 382
Query: 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490
G ADLV +P++ + L N+ + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 383 GKEADLVFIQPDSSYVLKNED-LEYRH-KVSPYVGRTIGARITKTILRGDVIY 433
|
Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| 255556025 | 500 | allantoinase, putative [Ricinus communis | 0.980 | 0.994 | 0.764 | 0.0 | |
| 224079243 | 504 | predicted protein [Populus trichocarpa] | 0.956 | 0.962 | 0.788 | 0.0 | |
| 18412757 | 506 | allantoinase [Arabidopsis thaliana] gi|1 | 0.960 | 0.962 | 0.740 | 0.0 | |
| 21555036 | 506 | unknown [Arabidopsis thaliana] | 0.960 | 0.962 | 0.738 | 0.0 | |
| 297813881 | 505 | hypothetical protein ARALYDRAFT_490140 [ | 0.950 | 0.954 | 0.750 | 0.0 | |
| 39653353 | 512 | allantoinase [Robinia pseudoacacia] | 0.988 | 0.978 | 0.688 | 0.0 | |
| 356549345 | 512 | PREDICTED: probable allantoinase 1-like | 0.982 | 0.972 | 0.676 | 0.0 | |
| 356555194 | 513 | PREDICTED: probable allantoinase 1-like | 0.990 | 0.978 | 0.676 | 0.0 | |
| 357446489 | 504 | Allantoinase [Medicago truncatula] gi|12 | 0.986 | 0.992 | 0.693 | 0.0 | |
| 356549347 | 513 | PREDICTED: probable allantoinase 1-like | 0.984 | 0.972 | 0.668 | 0.0 |
| >gi|255556025|ref|XP_002519047.1| allantoinase, putative [Ricinus communis] gi|223541710|gb|EEF43258.1| allantoinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/502 (76%), Positives = 440/502 (87%), Gaps = 5/502 (0%)
Query: 5 NLQWRLLPTLTLLAASLFLLVFKDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVISGAVE 64
+L WR+LP L LLA+ + F S KL++++CSLLPY+ +W+ SK IVTP+GVISGAVE
Sbjct: 3 HLLWRMLPLLALLASFFY---FFQSQKLTYNDCSLLPYSHFWIISKNIVTPRGVISGAVE 59
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 124
+KEGNI+S+V EEDW N K G ++DYGE V+MPG IDVHAHLDDPGRTEWEGFPSGTKA
Sbjct: 60 VKEGNIVSVVKEEDWHVNFKRGHMIDYGEVVVMPGFIDVHAHLDDPGRTEWEGFPSGTKA 119
Query: 125 AAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 184
AAAGGITTLIDMPLNSDPST+S ETL+LK++AAEK IYVDVGFWGGLVPENA+N S+LEA
Sbjct: 120 AAAGGITTLIDMPLNSDPSTVSVETLRLKLEAAEKNIYVDVGFWGGLVPENAFNGSSLEA 179
Query: 185 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 244
LL+AGVLGLKSFMCPSGINDFPMT+A+HIKEGLSVLA+Y+RPLLVHAE+++ SE ++ E
Sbjct: 180 LLSAGVLGLKSFMCPSGINDFPMTDATHIKEGLSVLAKYRRPLLVHAEIQQDSESYI--E 237
Query: 245 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDL 304
D D R YSTYLKTRP SWEEAAIRELLTV+KDTR GPAEG+HLHIVHLSD+ SSL L
Sbjct: 238 DGMDDPRHYSTYLKTRPASWEEAAIRELLTVSKDTRIGGPAEGSHLHIVHLSDSGSSLQL 297
Query: 305 LMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 364
L +AK +GDS+TVETCPHYLAFSAEEI DGDTRFKCAPPIRDA NKE LW+AL+ G IDM
Sbjct: 298 LKQAKRSGDSVTVETCPHYLAFSAEEIQDGDTRFKCAPPIRDATNKEALWKALLKGDIDM 357
Query: 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 424
LSSDHSPTVPELKLL+EGNFL+AWGGISSLQFV PVTW+YGRKYGVTLEQLA WWSERPA
Sbjct: 358 LSSDHSPTVPELKLLNEGNFLRAWGGISSLQFVFPVTWTYGRKYGVTLEQLALWWSERPA 417
Query: 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484
KLAGQ SKG I +G HAD+V+W+P AEF+L +D P+++KH SISAY G +LSGKVLAT
Sbjct: 418 KLAGQESKGGIVVGKHADIVIWDPNAEFDLSDDLPIYIKHSSISAYKGTKLSGKVLATFV 477
Query: 485 RGNLVYKEGNHAPAACGSPILA 506
RGNLVY+EG HAP ACGSPILA
Sbjct: 478 RGNLVYREGKHAPTACGSPILA 499
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079243|ref|XP_002305806.1| predicted protein [Populus trichocarpa] gi|222848770|gb|EEE86317.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/488 (78%), Positives = 434/488 (88%), Gaps = 3/488 (0%)
Query: 21 LFLLVFKDSAKL-SHSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDW 79
++ F+DS L S+CSL PYN YW+ SK IVTP GVISGAVE+KE I+SI+ EEDW
Sbjct: 19 IYFFYFQDSPTLFERSDCSLFPYNHYWIISKLIVTPHGVISGAVEVKEEKIVSIIKEEDW 78
Query: 80 PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 139
N K GQ++DYGEAV+MPGLIDVHAHL+DPGRTEWEGFPSGT+AAAAGGITTLIDMPLN
Sbjct: 79 HGNLKKGQIIDYGEAVVMPGLIDVHAHLNDPGRTEWEGFPSGTRAAAAGGITTLIDMPLN 138
Query: 140 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199
+ P+T+S ETLKLK+DAAEK IYVDVGFWGGLVPENA++A++LEALL+AG LGLKSFMCP
Sbjct: 139 NFPATVSAETLKLKIDAAEKNIYVDVGFWGGLVPENAFDANSLEALLSAGALGLKSFMCP 198
Query: 200 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 259
SGINDFPMTN+SHIKEGLS+LA+Y+RPLLVHAE+ + SE H LED D RSYSTYLKT
Sbjct: 199 SGINDFPMTNSSHIKEGLSILAKYRRPLLVHAEIPQDSESH--LEDGENDPRSYSTYLKT 256
Query: 260 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319
RPPSWEEAAIRELLTV+KDTR GPAEGAHLH+VHLSDA SSL LL EAK+NGDS+TVET
Sbjct: 257 RPPSWEEAAIRELLTVSKDTRIGGPAEGAHLHVVHLSDAGSSLQLLKEAKSNGDSVTVET 316
Query: 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 379
CPHYLAFSAEEI DGDT FKCAPPIRDAANKE+LW AL++G IDMLSSDHSP+VP+LKL
Sbjct: 317 CPHYLAFSAEEIKDGDTCFKCAPPIRDAANKERLWTALLEGDIDMLSSDHSPSVPDLKLF 376
Query: 380 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN 439
DEGNFLKAWGGISSLQFVLPVTWS+GR+YGVTLEQLA WWSERPAKLAGQ KGAIA+GN
Sbjct: 377 DEGNFLKAWGGISSLQFVLPVTWSHGRQYGVTLEQLALWWSERPAKLAGQDLKGAIAVGN 436
Query: 440 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 499
HAD+ VWEP EFEL+ND PV++KHPSISAY+G +LSGKV++T RGNLVYKEG HAPAA
Sbjct: 437 HADITVWEPNVEFELNNDLPVYLKHPSISAYMGSKLSGKVMSTFVRGNLVYKEGKHAPAA 496
Query: 500 CGSPILAT 507
CG+PILAT
Sbjct: 497 CGAPILAT 504
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18412757|ref|NP_567276.1| allantoinase [Arabidopsis thaliana] gi|15028089|gb|AAK76575.1| unknown protein [Arabidopsis thaliana] gi|21281139|gb|AAM44996.1| unknown protein [Arabidopsis thaliana] gi|332657048|gb|AEE82448.1| allantoinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/494 (74%), Positives = 428/494 (86%), Gaps = 7/494 (1%)
Query: 17 LAASLFLLVFKDSAKLS-HSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVS 75
L +LF F L +++CSLLP++ YW++SKRIVTP G+ISG+VE+K G I+S+V
Sbjct: 16 LIVALFSFFFASPRSLQGNNKCSLLPHDHYWISSKRIVTPNGLISGSVEVKGGIIVSVVK 75
Query: 76 EEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 134
E DW ++ ++ +V+DYGEAV+MPGLIDVH HLDDPGR+EWEGFPSGTKAAAAGGITTL+
Sbjct: 76 EVDWHKSQRSRVKVIDYGEAVLMPGLIDVHVHLDDPGRSEWEGFPSGTKAAAAGGITTLV 135
Query: 135 DMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194
DMPLNS PST+S ETLKLK++AA+ RI+VDVGFWGGLVP+NA N+SALE+LL+AGVLGLK
Sbjct: 136 DMPLNSFPSTVSPETLKLKIEAAKNRIHVDVGFWGGLVPDNALNSSALESLLDAGVLGLK 195
Query: 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-DTRSY 253
SFMCPSGINDFPMTN +HIKEGLSVLA+YKRPLLVHAE+E R +++ED + D RSY
Sbjct: 196 SFMCPSGINDFPMTNITHIKEGLSVLAKYKRPLLVHAEIE----RDLEIEDGSENDPRSY 251
Query: 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313
TYLKTRP SWEE AIR LL+V ++TR G AEGAHLHIVHLSDASSSLDL+ EAK GD
Sbjct: 252 LTYLKTRPTSWEEGAIRNLLSVTENTRIGGSAEGAHLHIVHLSDASSSLDLIKEAKGKGD 311
Query: 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373
S+TVETCPHYLAFSAEEIP+GDTRFKC+PPIRDAAN+EKLWEALM+G IDMLSSDHSPT
Sbjct: 312 SVTVETCPHYLAFSAEEIPEGDTRFKCSPPIRDAANREKLWEALMEGDIDMLSSDHSPTK 371
Query: 374 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 433
PELKL+ +GNFLKAWGGISSLQFVLP+TWSYG+KYGVTLEQ+ SWWS+RP+KLAG SKG
Sbjct: 372 PELKLMSDGNFLKAWGGISSLQFVLPITWSYGKKYGVTLEQVTSWWSDRPSKLAGLHSKG 431
Query: 434 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
A+ +G HADLVVWEPEAEF++D DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG
Sbjct: 432 AVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEG 491
Query: 494 NHAPAACGSPILAT 507
HA ACGS LAT
Sbjct: 492 KHASDACGSLQLAT 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555036|gb|AAM63760.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/494 (73%), Positives = 427/494 (86%), Gaps = 7/494 (1%)
Query: 17 LAASLFLLVFKDSAKLS-HSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVS 75
L +LF F L +++CSLLP++ YW++SKRIVTP G+ISG+VE+K G I+S+V
Sbjct: 16 LIVALFSFFFASPRSLQGNNKCSLLPHDHYWISSKRIVTPNGLISGSVEVKGGIIVSVVK 75
Query: 76 EEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 134
E DW ++ ++ +V+DYGEAV+MPGLIDVH HLDDPGR+EWEGFPSGTKAAAAGGITTL+
Sbjct: 76 EVDWHKSQRSRVKVIDYGEAVLMPGLIDVHVHLDDPGRSEWEGFPSGTKAAAAGGITTLV 135
Query: 135 DMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194
DMPLNS PST+S ETLKLK++AA+ RI+VDVGFWGGLVP+NA N+SALE+LL+AGVLGLK
Sbjct: 136 DMPLNSFPSTVSPETLKLKIEAAKNRIHVDVGFWGGLVPDNALNSSALESLLDAGVLGLK 195
Query: 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-DTRSY 253
SFMCPSGINDFPMTN +HIKEGLSVLA+YKRPLLVHAE+E R +++ED + D RSY
Sbjct: 196 SFMCPSGINDFPMTNITHIKEGLSVLAKYKRPLLVHAEIE----RDLEIEDGSENDPRSY 251
Query: 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313
TYLKTRP SWEE AIR LL+V ++TR G AEGAHLHIVHLSDASSSLDL+ EAK GD
Sbjct: 252 LTYLKTRPTSWEEGAIRNLLSVTENTRIGGSAEGAHLHIVHLSDASSSLDLIKEAKGKGD 311
Query: 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 373
S+TVETCPHYLAFSAEEIP+GDTRFKC+PPIRDAAN+EKLWEALM+G IDMLSSDHSPT
Sbjct: 312 SVTVETCPHYLAFSAEEIPEGDTRFKCSPPIRDAANREKLWEALMEGDIDMLSSDHSPTK 371
Query: 374 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 433
PELKL+ +GNFLKAWGGISSLQFVLP+TWSYG+KYGVTLEQ+ SWWS+RP+KLA SKG
Sbjct: 372 PELKLMSDGNFLKAWGGISSLQFVLPITWSYGKKYGVTLEQVTSWWSDRPSKLARLHSKG 431
Query: 434 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
A+ +G HADLVVWEPEAEF++D DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG
Sbjct: 432 AVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEG 491
Query: 494 NHAPAACGSPILAT 507
HA ACGS LAT
Sbjct: 492 KHASDACGSLQLAT 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297813881|ref|XP_002874824.1| hypothetical protein ARALYDRAFT_490140 [Arabidopsis lyrata subsp. lyrata] gi|297320661|gb|EFH51083.1| hypothetical protein ARALYDRAFT_490140 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/489 (75%), Positives = 422/489 (86%), Gaps = 7/489 (1%)
Query: 22 FLLVFKDSAKLS-HSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP 80
F + F L ++ CSLLP++ YW++SKRIVTP G+ISG+VE+K G I+S+V E DW
Sbjct: 21 FSIFFASPRSLQGNNRCSLLPHDHYWISSKRIVTPDGLISGSVEVKGGIIVSVVKEVDWH 80
Query: 81 RNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN 139
++ ++ +V+DYGEAVIMPGLIDVH HLDDPGR+EWEGF SGTKAAAAGGITTL+DMPLN
Sbjct: 81 KSQRSRVKVIDYGEAVIMPGLIDVHVHLDDPGRSEWEGFSSGTKAAAAGGITTLVDMPLN 140
Query: 140 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199
S PST+S ETLKLK++AAE RI+VDVGFWGGLVP+NA NASALE+LL+AGVLGLKSFMCP
Sbjct: 141 SYPSTVSPETLKLKIEAAENRIHVDVGFWGGLVPDNALNASALESLLDAGVLGLKSFMCP 200
Query: 200 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED-DTLDTRSYSTYLK 258
SGINDFPMTN +HIKEGLSVLA+Y+RPLLVHAE+EK E +ED + D RSY TYLK
Sbjct: 201 SGINDFPMTNITHIKEGLSVLAKYRRPLLVHAEVEKDLE----IEDGNDNDPRSYLTYLK 256
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
TRP SWEE AIR LL+V ++TR G AEGAH+HIVHLSDASSSLDL+ EAK GDS+TVE
Sbjct: 257 TRPTSWEEGAIRNLLSVTENTRIGGSAEGAHVHIVHLSDASSSLDLIKEAKGKGDSVTVE 316
Query: 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378
TCPHYLAFSAEEIP GDTRFKC+PPIRDA N+EKLWEA+M+G IDMLSSDHSPT PELKL
Sbjct: 317 TCPHYLAFSAEEIPKGDTRFKCSPPIRDATNREKLWEAMMEGDIDMLSSDHSPTKPELKL 376
Query: 379 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 438
L +GNFLKAWGGISSLQFVLP+TWSYG+KYGVTLEQ+ASWWS+RP+KLAG SKGAI +G
Sbjct: 377 LSDGNFLKAWGGISSLQFVLPITWSYGKKYGVTLEQVASWWSDRPSKLAGLHSKGAITVG 436
Query: 439 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 498
HADLVVWEPEAEF+LD DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG HA
Sbjct: 437 KHADLVVWEPEAEFDLDEDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEGKHASD 496
Query: 499 ACGSPILAT 507
ACGS LAT
Sbjct: 497 ACGSLQLAT 505
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39653353|gb|AAR29343.1| allantoinase [Robinia pseudoacacia] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/510 (68%), Positives = 429/510 (84%), Gaps = 9/510 (1%)
Query: 5 NLQWRLLPTLTLLAASLFLLVFKDS--------AKLSHSECSLLPYNQYWLTSKRIVTPK 56
L WR+LP L LL + L +DS KL ECSLLP+ YW++SKRIVTP+
Sbjct: 3 QLVWRVLPMLALLVSFLVFFYLQDSYKAQLSPFIKLPGDECSLLPHRHYWISSKRIVTPQ 62
Query: 57 GVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116
G+ISG+VEI EG I+SI+ NS V+DYGEAV+MPGLIDVH HLD+PGRTEWE
Sbjct: 63 GIISGSVEINEGEIVSIIEGYGKQGNSMQEAVIDYGEAVVMPGLIDVHVHLDEPGRTEWE 122
Query: 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 176
GF +GT+AAAAGG+TT++DMPLN+ P+T+S ETL+LK++AAEK++YVDVGFWGGL+PENA
Sbjct: 123 GFDTGTRAAAAGGVTTVVDMPLNNYPTTVSKETLQLKLEAAEKKLYVDVGFWGGLIPENA 182
Query: 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236
N S LE LL+AGVLG+KSFMCPSGI+DFPMT HIKEGLSVLA+Y+RPLLVHAE+++
Sbjct: 183 LNTSILEGLLSAGVLGVKSFMCPSGIDDFPMTTIDHIKEGLSVLAKYRRPLLVHAEIQQD 242
Query: 237 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 296
S+ H++L+ + D R+Y TYL TRPPSWE+AAI+EL+ V KDT GP EGAH+HIVHLS
Sbjct: 243 SKNHLELKGNG-DPRAYLTYLNTRPPSWEQAAIKELVDVTKDTIIGGPLEGAHVHIVHLS 301
Query: 297 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA 356
D+S+SLDL+ EAK+ GDSI+VETCPHYLAFS+EEIPD DTRFKC+PPIRDA NKEKLWEA
Sbjct: 302 DSSASLDLIKEAKSRGDSISVETCPHYLAFSSEEIPDRDTRFKCSPPIRDALNKEKLWEA 361
Query: 357 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 416
+++GHID+LSSDHSPTVPELKLL+EG+FL+AWGGISSLQF LPVTWSYG+K+G+TLEQL+
Sbjct: 362 VLEGHIDLLSSDHSPTVPELKLLEEGDFLRAWGGISSLQFDLPVTWSYGKKHGLTLEQLS 421
Query: 417 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 476
WS++PA AG SKGAIA+GNHAD+VVW+PE EF+L++D+PV +KHPS+SAY+GRRLS
Sbjct: 422 LLWSKKPATFAGLESKGAIAVGNHADIVVWQPELEFDLNDDYPVFIKHPSLSAYMGRRLS 481
Query: 477 GKVLATISRGNLVYKEGNHAPAACGSPILA 506
GKVL T RGNLV+K+G HAPAACG PILA
Sbjct: 482 GKVLDTFVRGNLVFKDGKHAPAACGVPILA 511
|
Source: Robinia pseudoacacia Species: Robinia pseudoacacia Genus: Robinia Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549345|ref|XP_003543054.1| PREDICTED: probable allantoinase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/507 (67%), Positives = 428/507 (84%), Gaps = 9/507 (1%)
Query: 8 WRLLPTLTLLAASLFLLVFKDS--------AKLSHSECSLLPYNQYWLTSKRIVTPKGVI 59
WR+LP LT+L + + +DS KL S+CSLLP+ +W+TSKRIVTP+G+I
Sbjct: 6 WRVLPLLTILMSLVVFFYLQDSYRAHLHPLVKLPRSKCSLLPHRHFWITSKRIVTPQGII 65
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119
SG+VEI EG IIS++ SK +++DYG AV+MPGLIDVH HLD+PGRT WEGF
Sbjct: 66 SGSVEINEGKIISVIKGYSKQGKSKQEKIIDYGGAVVMPGLIDVHVHLDEPGRTAWEGFD 125
Query: 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 179
+GT+AAAAGG+TT++DMPLN+ P+T+S ETLKLK++AAE +IYVDVGFWGGL+PENA+N
Sbjct: 126 TGTRAAAAGGVTTVVDMPLNNHPTTVSRETLKLKLEAAENKIYVDVGFWGGLIPENAHNT 185
Query: 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239
S LE LL+AGVLGLKSFMCPSGI+DFP+T HIKEGLSVLA+Y+RPLLVH+E+++ S++
Sbjct: 186 SILEGLLSAGVLGLKSFMCPSGISDFPLTTIHHIKEGLSVLAKYRRPLLVHSEIQQHSKK 245
Query: 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299
H++L D R+Y TYL TRPPSWEEAAI+EL+ V KDTR GP EGAH+H+VHLSD+S
Sbjct: 246 HLELNDKG-GPRAYLTYLHTRPPSWEEAAIKELVGVTKDTRKGGPLEGAHVHVVHLSDSS 304
Query: 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359
+SLDL+ EAK GDSI+VETCPHYLAFS+EEIP+GDTRFKC+PPIRDA N+EKLWEA+++
Sbjct: 305 ASLDLIKEAKRRGDSISVETCPHYLAFSSEEIPNGDTRFKCSPPIRDAYNREKLWEAVLE 364
Query: 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 419
GHID+LSSDHSPTVP+LKLL+EG+FLKAWGG++SLQF LPVTWSYG+K+G+TLEQL+ W
Sbjct: 365 GHIDLLSSDHSPTVPQLKLLEEGDFLKAWGGVTSLQFDLPVTWSYGKKHGLTLEQLSLLW 424
Query: 420 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479
S++PA AG SKGAIA+GNHAD+VVW+PE EF+L+ D+PV +KHPS+SAY+GRRLSGKV
Sbjct: 425 SKKPATFAGLESKGAIAVGNHADIVVWKPEVEFDLNEDYPVFLKHPSLSAYMGRRLSGKV 484
Query: 480 LATISRGNLVYKEGNHAPAACGSPILA 506
L T RGNLV+K+G HAP+ACG PILA
Sbjct: 485 LETFVRGNLVFKKGKHAPSACGVPILA 511
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555194|ref|XP_003545920.1| PREDICTED: probable allantoinase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/510 (67%), Positives = 422/510 (82%), Gaps = 8/510 (1%)
Query: 5 NLQWRLLPTLTLLAASLFLLVFKDS--------AKLSHSECSLLPYNQYWLTSKRIVTPK 56
L WR+LP LT+L + +DS KL +CSLLP+ +W++SKRIVTP+
Sbjct: 3 QLLWRVLPLLTILVSFGVFFYLQDSYTAQFYALIKLPRDKCSLLPHRHFWISSKRIVTPQ 62
Query: 57 GVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116
G+ISG+VEI +G IIS+V K +V+DYG+AVIMPGLIDVH HLD+PGRTEWE
Sbjct: 63 GIISGSVEINDGKIISVVEGHANQGKPKQEEVIDYGDAVIMPGLIDVHVHLDEPGRTEWE 122
Query: 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 176
GF +GT+AAAAGG+TT++DMPLN+ P+T+S E LKLK+DAAE +IYVDVGFWGGL+PENA
Sbjct: 123 GFDTGTRAAAAGGVTTVVDMPLNNYPTTVSKEKLKLKLDAAEDKIYVDVGFWGGLIPENA 182
Query: 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 236
N S LE LL+AGVLG+KSFMCPSGINDFPMT HIK GL VLA+YKRP++VHAE+++
Sbjct: 183 LNTSILEGLLSAGVLGMKSFMCPSGINDFPMTTIDHIKAGLPVLAKYKRPIVVHAEVQQD 242
Query: 237 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 296
E H++L +D LD R+Y TYL RPPSWEEAAI++L+ V KDTR GP EGAH+HIVHLS
Sbjct: 243 FENHLELNEDNLDPRAYLTYLNARPPSWEEAAIKQLVGVTKDTRKGGPLEGAHVHIVHLS 302
Query: 297 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA 356
D+S+SLDL+ EAK+ GDSI+VETCPHYLAFS+EEIP+GDTRFKC+PPIRDA N+EKLW A
Sbjct: 303 DSSASLDLIKEAKSRGDSISVETCPHYLAFSSEEIPNGDTRFKCSPPIRDAYNREKLWGA 362
Query: 357 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 416
+++GHID+LSSDHSPTVPELKL++EG+FLKAWGGISSLQF LPVTWSYG+KYG+TLEQL+
Sbjct: 363 VLEGHIDLLSSDHSPTVPELKLMEEGDFLKAWGGISSLQFNLPVTWSYGKKYGLTLEQLS 422
Query: 417 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 476
WS++PA LAG SKGAIA+GNHAD+VVW+PE EF+LD+D+PV +KH +SAY+GRRLS
Sbjct: 423 LLWSKKPATLAGLESKGAIAVGNHADIVVWQPELEFDLDDDYPVFIKHSELSAYMGRRLS 482
Query: 477 GKVLATISRGNLVYKEGNHAPAACGSPILA 506
GKVL T RGNLV+K+G HAPA CG ILA
Sbjct: 483 GKVLETFVRGNLVFKDGKHAPAPCGVQILA 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446489|ref|XP_003593522.1| Allantoinase [Medicago truncatula] gi|124360607|gb|ABN08606.1| Dihydroorotase [Medicago truncatula] gi|355482570|gb|AES63773.1| Allantoinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/503 (69%), Positives = 426/503 (84%), Gaps = 3/503 (0%)
Query: 5 NLQWRLLPTLTLLAA-SLFLLVFKDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVISGAV 63
L WR+LP LTLL + SLF + KL ECSLLPY+ YW++SKRI+T +G ISG+V
Sbjct: 3 QLLWRVLPLLTLLISFSLFFYLQSPIIKLPGDECSLLPYSHYWISSKRILTSQGFISGSV 62
Query: 64 EIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123
EI EG I+SIV E +++ QV+DYG+AV+MPGLIDVH HLD+PGRT+WEGF +GT+
Sbjct: 63 EINEGKIVSIV-EGYGKKDNSVHQVIDYGDAVVMPGLIDVHVHLDEPGRTDWEGFVTGTQ 121
Query: 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALE 183
AAAAGG+TT++DMPLN+ P+T+S ETL+LK++AAE +IYVDVGFWGGLVPENA N S LE
Sbjct: 122 AAAAGGVTTVVDMPLNNHPTTMSKETLELKLEAAEDKIYVDVGFWGGLVPENAQNTSILE 181
Query: 184 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 243
LL+AGVLGLKSFMCPSGI+DFPMT HIKEGLSVLA+Y+RPLLVH+E+++ SE +L
Sbjct: 182 GLLDAGVLGLKSFMCPSGIDDFPMTTIEHIKEGLSVLAKYRRPLLVHSEIQQDSESSSEL 241
Query: 244 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLD 303
E + D SY TYL TRPPSWEEAAI+EL+ KDTR G EGAH+HIVHLSD+S+SLD
Sbjct: 242 EGNG-DPHSYKTYLDTRPPSWEEAAIKELVDATKDTRIGGSLEGAHVHIVHLSDSSASLD 300
Query: 304 LLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363
L+ EAK GDSI++ETCPHYL FS+EEIPD DTR+KC+PPIRDA+N+EKLWEAL+DGHID
Sbjct: 301 LIKEAKRRGDSISIETCPHYLTFSSEEIPDKDTRYKCSPPIRDASNREKLWEALLDGHID 360
Query: 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERP 423
+LSSDHSPTVP+LKLL EG+FLKAWGGISSLQF LPVTWSYG+K+G+TLE+L+ WS++P
Sbjct: 361 LLSSDHSPTVPKLKLLKEGDFLKAWGGISSLQFDLPVTWSYGKKHGLTLEKLSLLWSQKP 420
Query: 424 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 483
AKLAG SKGAIA+GNHAD+VVW+PE EF+L++D+PV +KHPS+SAY+G RL+GKVL T
Sbjct: 421 AKLAGLESKGAIAVGNHADIVVWQPEVEFDLNDDYPVFIKHPSLSAYMGSRLAGKVLDTF 480
Query: 484 SRGNLVYKEGNHAPAACGSPILA 506
RGNLV+K+G HAPAACG PILA
Sbjct: 481 VRGNLVFKDGKHAPAACGVPILA 503
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549347|ref|XP_003543055.1| PREDICTED: probable allantoinase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/507 (66%), Positives = 423/507 (83%), Gaps = 8/507 (1%)
Query: 8 WRLLPTLTLLAASLFLLVFKDS--------AKLSHSECSLLPYNQYWLTSKRIVTPKGVI 59
WR+LP LT+L + +DS KL +CSLLP+ +W++SKRIVTP+G+I
Sbjct: 6 WRVLPLLTILVSFGVFFYLQDSYTAQLFPLIKLPRDKCSLLPHRHFWISSKRIVTPQGII 65
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119
SG+VEI +G IIS+V K +V+DYG+AVIMPGLIDVH HL++PGRTEWEGF
Sbjct: 66 SGSVEINDGKIISVVEGHAIQGKPKQEEVIDYGDAVIMPGLIDVHVHLNEPGRTEWEGFD 125
Query: 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 179
+GT+AAAAGG+TT++DMPLN P+T+S E LKLK+DAAE +IYVDVGFWGGL+PENA N
Sbjct: 126 TGTRAAAAGGVTTVVDMPLNCYPTTVSKEKLKLKLDAAEDKIYVDVGFWGGLIPENALNT 185
Query: 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239
S L+ LL+AGVLG+KSFMCPSGI+DFPM HIK GLSVLA+Y+RP++VHAE+++ E
Sbjct: 186 SILDGLLSAGVLGVKSFMCPSGIDDFPMATIDHIKAGLSVLAKYRRPIVVHAEIQQDFEN 245
Query: 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299
H++L +D LD R+Y TYL TRPPSWEEAAI++L++V KDTR GP EGAH+HIVHLSD+S
Sbjct: 246 HLELNEDNLDPRAYLTYLNTRPPSWEEAAIKQLVSVTKDTRKGGPLEGAHVHIVHLSDSS 305
Query: 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359
+SLDL+ EAK++GDSI+VETCPHYLAF++EEIP+GDTRFKC+PPIRDA NK+KLWEA+++
Sbjct: 306 ASLDLIKEAKSHGDSISVETCPHYLAFTSEEIPNGDTRFKCSPPIRDAYNKDKLWEAVLE 365
Query: 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 419
GHID+LS+DHSPTVPELKL++EG+FLKAWGGISSLQF LPVTWSYG+KYG+TLEQL+ W
Sbjct: 366 GHIDLLSTDHSPTVPELKLMEEGDFLKAWGGISSLQFNLPVTWSYGKKYGLTLEQLSLLW 425
Query: 420 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479
S++PA LAG SKG IA+GNHAD+VVW+PE EF+LD+D+PV +KH +SAY+GRRLSGKV
Sbjct: 426 SKKPATLAGLESKGTIAVGNHADIVVWQPELEFDLDDDYPVFIKHSELSAYMGRRLSGKV 485
Query: 480 LATISRGNLVYKEGNHAPAACGSPILA 506
L T RGNLV+K+G HAPA CG ILA
Sbjct: 486 LETFVRGNLVFKDGKHAPAPCGVQILA 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| TAIR|locus:505006432 | 506 | ALN "allantoinase" [Arabidopsi | 0.927 | 0.928 | 0.712 | 4.3e-189 | |
| TIGR_CMR|CPS_4867 | 473 | CPS_4867 "putative allantoinas | 0.877 | 0.940 | 0.395 | 1.1e-89 | |
| DICTYBASE|DDB_G0282199 | 649 | allB1 "allantoinase" [Dictyost | 0.856 | 0.668 | 0.368 | 1e-77 | |
| CGD|CAL0005274 | 586 | DAL1 [Candida albicans (taxid: | 0.491 | 0.424 | 0.367 | 1.1e-74 | |
| UNIPROTKB|Q5A7L5 | 586 | DAL1 "Putative uncharacterized | 0.491 | 0.424 | 0.367 | 1.1e-74 | |
| DICTYBASE|DDB_G0270162 | 510 | allB2 "allantoinase" [Dictyost | 0.863 | 0.858 | 0.360 | 8.4e-74 | |
| ZFIN|ZDB-GENE-041212-22 | 459 | zgc:103559 "zgc:103559" [Danio | 0.792 | 0.875 | 0.391 | 1.4e-73 | |
| SGD|S000001466 | 460 | DAL1 "Allantoinase" [Saccharom | 0.818 | 0.902 | 0.379 | 1.7e-73 | |
| FB|FBgn0030914 | 492 | CG6106 [Drosophila melanogaste | 0.779 | 0.802 | 0.397 | 8.9e-70 | |
| ASPGD|ASPL0000076835 | 506 | AN4603 [Emericella nidulans (t | 0.577 | 0.579 | 0.396 | 4.2e-69 |
| TAIR|locus:505006432 ALN "allantoinase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
Identities = 339/476 (71%), Positives = 399/476 (83%)
Query: 34 HSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYG 92
+++CSLLP++ YW++SKRIVTP G+ISG+VE+K G I+S+V E DW ++ ++ +V+DYG
Sbjct: 34 NNKCSLLPHDHYWISSKRIVTPNGLISGSVEVKGGIIVSVVKEVDWHKSQRSRVKVIDYG 93
Query: 93 EAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKL 152
EAV+MPGLIDVH HLDDPGR+EWEGFPS L+DMPLNS PST+S ETLKL
Sbjct: 94 EAVLMPGLIDVHVHLDDPGRSEWEGFPSGTKAAAAGGITTLVDMPLNSFPSTVSPETLKL 153
Query: 153 KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 212
K++AA+ RI+VDVGFWGGLVP+NA N+SALE+LL+AGVLGLKSFMCPSGINDFPMTN +H
Sbjct: 154 KIEAAKNRIHVDVGFWGGLVPDNALNSSALESLLDAGVLGLKSFMCPSGINDFPMTNITH 213
Query: 213 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-DTRSYSTYLKTRPPSWEEAAIRE 271
IKEGLSVLA+YKRPLLVHAE+E R +++ED + D RSY TYLKTRP SWEE AIR
Sbjct: 214 IKEGLSVLAKYKRPLLVHAEIE----RDLEIEDGSENDPRSYLTYLKTRPTSWEEGAIRN 269
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEI 331
LL+V ++TR G AEGAHLHIVH EAK GDS+TVETCPHYLAFSAEEI
Sbjct: 270 LLSVTENTRIGGSAEGAHLHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEI 329
Query: 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 391
P+GDTRFKC+PPIRDAAN+EKLWEALM+G IDMLSSDHSPT PELKL+ +GNFLKAWGGI
Sbjct: 330 PEGDTRFKCSPPIRDAANREKLWEALMEGDIDMLSSDHSPTKPELKLMSDGNFLKAWGGI 389
Query: 392 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
SSLQFVLP+TWSYG+KYGVTLEQ+ SWWS+RP+KLAG SKGA+ +G HADLVVWEPEAE
Sbjct: 390 SSLQFVLPITWSYGKKYGVTLEQVTSWWSDRPSKLAGLHSKGAVTVGKHADLVVWEPEAE 449
Query: 452 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 507
F++D DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG HA ACGS LAT
Sbjct: 450 FDVDEDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEGKHASDACGSLQLAT 505
|
|
| TIGR_CMR|CPS_4867 CPS_4867 "putative allantoinase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 185/468 (39%), Positives = 273/468 (58%)
Query: 43 NQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMP 98
+ + L SK+++ G +I+ +EIK G +I + + + D GE V+MP
Sbjct: 20 SHFALQSKKVIVHAGDQSEMIAACIEIK-GQLIHNIHPYGQALDCP---ITDLGEQVLMP 75
Query: 99 GLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAE 158
GL+D H H+++PGRTEWEGF + L+DMPLN P T + + K+ +
Sbjct: 76 GLVDSHVHINEPGRTEWEGFNTATQAAAAGGITTLVDMPLNCIPVTTTKAAFEEKLASVH 135
Query: 159 KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 218
+++VD GFWGG++P+N L+ LL AGVLG+KSF+ SGI +FP A I+ +
Sbjct: 136 DKLWVDCGFWGGVIPDNI---DELDDLLTAGVLGVKSFLIDSGIEEFPNVAAKDIRAAMP 192
Query: 219 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278
+LA++ P L+HAE++ GS VK+ D Y+++L++RP SWE AI ++ +A++
Sbjct: 193 ILAKHDVPYLIHAELDCGSFDDVKITD------KYNSFLESRPKSWENNAISLMVDMARE 246
Query: 279 TRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 338
++ G + +HIVH +AK G T ETCPHYL ++E IPDG T F
Sbjct: 247 SKAAG--DNCKIHIVHLSSDEALDTIA-KAKAEGLRFTAETCPHYLTIASENIPDGKTLF 303
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398
KC PPIR+ N+E+LW+A+ DG I + SDHSP P+LK +D G+ KAWGGIS+LQF L
Sbjct: 304 KCCPPIRENKNREQLWQAVTDGRISFIVSDHSPCTPQLKHIDTGDIEKAWGGISALQFGL 363
Query: 399 PVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDND 457
P+ W+ + TL LA S AK AG KG I++G+HADL+V++ A F + D
Sbjct: 364 PLIWTEAKNRDFTLVDLARLMSHETAKFAGLDKIKGQISVGHHADLMVFDDTASFIISTD 423
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505
H KH I+ Y+GR++ G+++ T RG VY + G P+L
Sbjct: 424 MIKH-KH-KITPYVGRKVDGQIMQTFVRGQQVYCNDQFISSPIGRPLL 469
|
|
| DICTYBASE|DDB_G0282199 allB1 "allantoinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 169/459 (36%), Positives = 264/459 (57%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQ--VVDYGEAVIMPGLIDVH 104
+ K++V + ++ IK G II I +D+ K +++ + VIM GL+D H
Sbjct: 10 IKGKKVVINGEIKPASILIKNGIIIDI---KDYSSEIKEEHEVLIEEEKLVIMGGLVDSH 66
Query: 105 AHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164
H+++PGRTEWEGF S +IDMPLNS P T + E L+ K+++ ++ VD
Sbjct: 67 VHINEPGRTEWEGFLSATSAAASGGVTTIIDMPLNSSPVTTTFENLQTKIESMPGKLRVD 126
Query: 165 VGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224
VG GG++P N+ S + +L GV+G KSF+ SGI++FP I+E ++V+ + K
Sbjct: 127 VGLLGGIIPGNSSEISRM--VLEGGVVGFKSFLVHSGIDEFPHVKEDDIQEAMNVMKKLK 184
Query: 225 RP-------LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 276
++ HAE+E+ E +L+ + D + Y T+LK+RP E AI +++ +
Sbjct: 185 DEQGGRDVVMMFHAEIEEPIKEATERLQRENADPKLYDTFLKSRPRVSENIAIDKVIELT 244
Query: 277 KDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 336
K HIVH +G IT ET HYL F +E++P G+T
Sbjct: 245 KKNMIK-------THIVHLSSSDAIEAIHEAVHNDGVPITAETTYHYLYFESEQVPYGNT 297
Query: 337 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 396
+KC PP+R++ NK+ LW+A+ +G I+++ SDHSP +LKL+++G+F+KAWGGISSLQ
Sbjct: 298 LYKCCPPVRESENKDLLWKAVTNGTINIIVSDHSPCTLDLKLIEQGDFMKAWGGISSLQL 357
Query: 397 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELD 455
LP+ W+ K GV L +L+ + S+ P++L G KG+I IG AD V+W+PE F +D
Sbjct: 358 GLPIIWTEASKRGVPLAKLSEYMSDAPSRLVGLNDRKGSIKIGRDADFVIWDPEESFTVD 417
Query: 456 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ +K+ + S Y G +L G V TI RGN ++ +G+
Sbjct: 418 QGL-LMVKNKN-SPYHGEKLLGVVHHTILRGNKIFSKGD 454
|
|
| CGD|CAL0005274 DAL1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 96/261 (36%), Positives = 144/261 (55%)
Query: 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXME 307
+D +Y+T+L +RP ++E AI E++ + T LHIVH
Sbjct: 330 IDPTAYATFLASRPDNFETTAIAEIINCSTLLPT------VPLHIVHLATHEAVPLLRA- 382
Query: 308 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367
AK G +T ETC HYL+ AE I T FKC PPIR N++ LW+AL + I + S
Sbjct: 383 AKAKGLPVTAETCFHYLSLCAERIGSCSTHFKCCPPIRTDDNRKLLWKALRNDVITTVVS 442
Query: 368 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAK 425
DHSP P+LK +++G+F +AWGGISS+ F LP+ ++ G K ++L ++ W S AK
Sbjct: 443 DHSPCTPDLKGMEKGDFFEAWGGISSVGFGLPILYTEGLKLDPPISLAEINKWCSWNTAK 502
Query: 426 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484
G KG I +G ADL++++ +A++ ++N + K+ ++AY G G+VL T+
Sbjct: 503 QVGLSHCKGTIRVGYDADLLIFDTDAKYVVENKE-TYFKN-KLTAYDGMEFRGRVLETLV 560
Query: 485 RGNLVYKEGNHAPAACGSPIL 505
RGN V+ G G IL
Sbjct: 561 RGNTVFAMGRGFSGPKGKLIL 581
|
|
| UNIPROTKB|Q5A7L5 DAL1 "Putative uncharacterized protein DAL1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 96/261 (36%), Positives = 144/261 (55%)
Query: 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXME 307
+D +Y+T+L +RP ++E AI E++ + T LHIVH
Sbjct: 330 IDPTAYATFLASRPDNFETTAIAEIINCSTLLPT------VPLHIVHLATHEAVPLLRA- 382
Query: 308 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367
AK G +T ETC HYL+ AE I T FKC PPIR N++ LW+AL + I + S
Sbjct: 383 AKAKGLPVTAETCFHYLSLCAERIGSCSTHFKCCPPIRTDDNRKLLWKALRNDVITTVVS 442
Query: 368 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAK 425
DHSP P+LK +++G+F +AWGGISS+ F LP+ ++ G K ++L ++ W S AK
Sbjct: 443 DHSPCTPDLKGMEKGDFFEAWGGISSVGFGLPILYTEGLKLDPPISLAEINKWCSWNTAK 502
Query: 426 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484
G KG I +G ADL++++ +A++ ++N + K+ ++AY G G+VL T+
Sbjct: 503 QVGLSHCKGTIRVGYDADLLIFDTDAKYVVENKE-TYFKN-KLTAYDGMEFRGRVLETLV 560
Query: 485 RGNLVYKEGNHAPAACGSPIL 505
RGN V+ G G IL
Sbjct: 561 RGNTVFAMGRGFSGPKGKLIL 581
|
|
| DICTYBASE|DDB_G0270162 allB2 "allantoinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 170/471 (36%), Positives = 258/471 (54%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEA--------VIMP 98
+ + ++ VI ++ I+ G I I P+ + Y + +IM
Sbjct: 32 IRGRNVIYNGNVIPLSILIRNGKTIGIKDYSFNPKKLNENYEILYDDRECNNNEDFIIMG 91
Query: 99 GLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAE 158
GL+D H H+++PGRTEWEGF S ++DMPLNS P T S + L K+++ +
Sbjct: 92 GLVDSHVHVNEPGRTEWEGFESATSAAAAGGVTTIVDMPLNSSPVTTSFKNLLDKIESMK 151
Query: 159 KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 218
++ VDVG GG+VP N+ + +L GVLG KSF+ PSGI++FP N + I+E ++
Sbjct: 152 GKLRVDVGLLGGIVPGNSKEIKKM--VLQGGVLGFKSFLLPSGIDEFPPVNENDIQEAMN 209
Query: 219 VL----ARYKRP---LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 270
+ +Y ++ HAE+E+ E V+L+++ D + Y TYL +RP E AI
Sbjct: 210 EMKLLKCQYNNSDVIMMFHAEVEEPIKEATVRLKNENADPKLYKTYLDSRPKISENQAIS 269
Query: 271 ELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEE 330
+L+ + + + HIVH EA G I+ ET +YL ++E
Sbjct: 270 KLIDITRQNQI------VSTHIVHLSSSESIEQIR-EAMDQGVPISAETTYNYLHLTSES 322
Query: 331 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE-----GNFL 385
+P G+T FK APP+R+ NKE LW A+++G I ++ SDHSP LK L E G+FL
Sbjct: 323 VPYGNTLFKSAPPVREHENKELLWNAIINGTIKLIVSDHSPCTINLKQLKEDNQSIGDFL 382
Query: 386 KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLV 444
KAWGGISSL+ LP+ W+ + G+ + QL+ W S P+KL G KG+I IG AD V
Sbjct: 383 KAWGGISSLELGLPIIWTECKNRGIPITQLSEWLSNGPSKLVGLNDRKGSIEIGRDADFV 442
Query: 445 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 495
++ P F + N+ + +K+ SAY G +L G V TI RGN ++K+G++
Sbjct: 443 IFNPNESF-IVNEKKLFLKN-KFSAYNGEKLFGVVYETILRGNSIFKKGDN 491
|
|
| ZFIN|ZDB-GENE-041212-22 zgc:103559 "zgc:103559" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 165/421 (39%), Positives = 227/421 (53%)
Query: 86 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTI 145
G+V+D G+++IMPG++D H H+++PGRT+WEG+ + + DMPLN+ P T
Sbjct: 48 GKVLDVGDSLIMPGIVDSHVHVNEPGRTDWEGYWTATRAAAAGGITTIADMPLNTIPPTT 107
Query: 146 STETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDF 205
+ K+ AA + +VD FWGG++P N L+ + AGV G K F+ SG+ +F
Sbjct: 108 TLRNFNEKLCAATGQCFVDTAFWGGVIPGNQME---LKPMCQAGVAGFKCFLIHSGVEEF 164
Query: 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265
P + + + L LL HAE E H E D + YST+LK+RP E
Sbjct: 165 PHVTDADLHAAMKQLQGTNSVLLFHAEQELS---HPVAEKG--DPQEYSTFLKSRPDIME 219
Query: 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLA 325
AI ++ + HIVH AK G +TVET HYL
Sbjct: 220 LEAIHTVIEFCLQYQV-------RCHIVHLSSAEPLELIRA-AKQAGAPLTVETTHHYLN 271
Query: 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 385
SAE+IP T+FKC PPIR AN+E LW AL G IDM+ SDHSP P+LK LD G+F
Sbjct: 272 LSAEDIPGRATQFKCCPPIRGTANQELLWSALKAGDIDMVVSDHSPCTPDLKCLDSGDFT 331
Query: 386 KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLV 444
+AWGGISSLQF L + W+ K G + A E PA+L KG++ G+ ADLV
Sbjct: 332 QAWGGISSLQFGLSLFWTSASKRGFSFSDAARLLREEPARLCRLDNQKGSLIPGHDADLV 391
Query: 445 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504
+W+PE EF + D+ +H K+ ++ YL R L G V I RG +VY G+ + G +
Sbjct: 392 IWDPEKEFTVKEDN-IHHKN-KLTPYLDRVLRGMVRFPIVRGQVVYSHGSFSSQPLGKHL 449
Query: 505 L 505
L
Sbjct: 450 L 450
|
|
| SGD|S000001466 DAL1 "Allantoinase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 166/437 (37%), Positives = 246/437 (56%)
Query: 60 SGAV-EIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGF 118
SG + ++ EG S+V E+ + + + I+PGL+D H HL++PGRT WEGF
Sbjct: 28 SGTILDVLEG---SVVMEKTEITKYEIHTLENVSPCTILPGLVDSHVHLNEPGRTSWEGF 84
Query: 119 PSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYN 178
+ ++DMPLN+ P T + E ++K++AAE +++ DVGFWGGLVP +N
Sbjct: 85 ETGTQAAISGGVTTVVDMPLNAIPPTTNVENFRIKLEAAEGQMWCDVGFWGGLVP---HN 141
Query: 179 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238
L L+ AGV G K F+ SG+ +FP +I+E L VLA ++ HAE+ K E
Sbjct: 142 LPDLIPLVKAGVRGFKGFLLDSGVEEFPPIGKEYIEEALKVLAEEDTMMMFHAELPKAHE 201
Query: 239 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXX 298
+ E R YS++L +RP S+E AI +L + +GP +HIVH
Sbjct: 202 DQQQPEQSH---REYSSFLSSRPDSFEIDAINLILECLR--ARNGPVPP--VHIVHLASM 254
Query: 299 XXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358
+A+ +G +T ETC HYL +AE+IPDG T FKC PPIR +N++ LW+AL
Sbjct: 255 KAIPLIR-KARASGLPVTTETCFHYLCIAAEQIPDGATYFKCCPPIRSESNRQGLWDALR 313
Query: 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASW 418
+G I + SDHSP PELK L +G+F +WGGI+S+ LP+ ++ G +L + +W
Sbjct: 314 EGVIGSVVSDHSPCTPELKNLQKGDFFDSWGGIASVGLGLPLMFTQG----CSLVDIVTW 369
Query: 419 WSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477
+ + G KG IA G ADLVV++ ++ ++ N V+ K+ ++AY G + G
Sbjct: 370 CCKNTSHQVGLSHQKGTIAPGYDADLVVFDTASKHKISNSS-VYFKN-KLTAYNGMTVKG 427
Query: 478 KVLATISRGNLVYKEGN 494
VL TI RG +VY N
Sbjct: 428 TVLKTILRGQVVYTNAN 444
|
|
| FB|FBgn0030914 CG6106 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 170/428 (39%), Positives = 233/428 (54%)
Query: 82 NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSD 141
N+++ V D+G+ V+MPGLID + H+++PGR +WEGF + +ID P N+
Sbjct: 55 NTESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTIIDRPTNAQ 114
Query: 142 PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMC-PS 200
P T+S LK K A +IYVDVGFWGGLVP N L ALL AGV+GL+ +C P+
Sbjct: 115 PPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNG---DQLAALLGAGVMGLQCTLCDPA 171
Query: 201 G--INDFPMTNASHIKEGLSVL----ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254
+FP N S ++E LS L A + + VHAE+ +E H D R Y
Sbjct: 172 APVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAVHAELPLTTEIH----PDEEAPREYG 227
Query: 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDS 314
T+L TRPP E +A + L +A P +HI++ E + G +
Sbjct: 228 TFLVTRPPQMEISATQLLCRLANRH----PRRC--IHILNCSSGESLPLVE-ECRRQGGN 280
Query: 315 ITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTV 373
+TV+TCPHYLA +AE++PD T FK PPIR+ N+E+LW+AL G I M+ SDHSP
Sbjct: 281 LTVDTCPHYLALAAEDVPDCGTEFKTWPPIRERRNQEQLWQALRPGGAIRMIGSDHSPAT 340
Query: 374 PELKLLD----EGNFLKAWGGISSLQFVLPVTWSYG-RKYG---VTLEQLASWWSERPAK 425
P + L GNFLKAW GI+SLQ L V W+ + G +T+ + + PA
Sbjct: 341 PGARALTCGRGRGNFLKAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPAN 400
Query: 426 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484
L G SKG IA G AD VW PE EF + + + + Y G++L G V AT+
Sbjct: 401 LCGLSASKGRIAEGYDADFCVWSPEEEFTVGPE--LLYTATKATPYAGQKLRGVVHATVV 458
Query: 485 RGNLVYKE 492
RG VY++
Sbjct: 459 RGLHVYQQ 466
|
|
| ASPGD|ASPL0000076835 AN4603 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 125/315 (39%), Positives = 181/315 (57%)
Query: 72 SIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXX 131
S++ D+P + D+ V++PGL+D H HL++PGRTEWEGF +
Sbjct: 42 SVIPASDFPDGTP---YTDFSPYVLLPGLVDAHVHLNEPGRTEWEGFYTGTQAAAFGGVT 98
Query: 132 XLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVL 191
+IDMPLN+ P T + E KLK+ AAE + +VDVGF+GG++P NA L+AL+ GV
Sbjct: 99 TVIDMPLNAIPPTTTVENFKLKLKAAEGKCWVDVGFYGGIIPGNA---GELKALVREGVR 155
Query: 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM---EKGSERHVKLEDDTL 248
G K F+ SG+++FP ++ +++ ++ LA L+ HAEM + SE + +
Sbjct: 156 GFKGFLIDSGVDEFPAVSSEDVRKAMAELADEPTTLMFHAEMVPPKTPSELPEVMPEGAP 215
Query: 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEA 308
+ +YST+L +RP +E A+ E+L+++ A LHIVH +A
Sbjct: 216 E--AYSTFLASRPSEYELCAVEEILSLSH------LAPKLPLHIVHLSAMEAIPLLR-KA 266
Query: 309 KTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL----MDGHIDM 364
+ G IT ETC HYL+ +AEEI DGDTR KC PPIR +N++ LW L DG I
Sbjct: 267 RAEGVPITAETCYHYLSLAAEEIRDGDTRHKCCPPIRSKSNQDALWAELDRHAEDGVIKT 326
Query: 365 LSSDHSPTVPELKLL 379
+ SDHSP P+LKLL
Sbjct: 327 IVSDHSPCTPDLKLL 341
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O32137 | ALLB_BACSU | 3, ., 5, ., 2, ., 5 | 0.34 | 0.8382 | 0.9529 | yes | no |
| Q82LL4 | ALLB_STRAW | 3, ., 5, ., 2, ., 5 | 0.4231 | 0.8323 | 0.9483 | yes | no |
| A1A8H7 | ALLB_ECOK1 | 3, ., 5, ., 2, ., 5 | 0.3481 | 0.8007 | 0.8962 | yes | no |
| Q02C42 | ALLB_SOLUE | 3, ., 5, ., 2, ., 5 | 0.3520 | 0.8303 | 0.9212 | yes | no |
| Q9RV76 | ALLB_DEIRA | 3, ., 5, ., 2, ., 5 | 0.3671 | 0.8303 | 0.9397 | yes | no |
| Q24PT9 | ALLB_DESHY | 3, ., 5, ., 2, ., 5 | 0.3532 | 0.8303 | 0.9376 | yes | no |
| Q82ZQ1 | ALLB_ENTFA | 3, ., 5, ., 2, ., 5 | 0.3363 | 0.8284 | 0.9251 | yes | no |
| Q9KAH8 | ALLB_BACHD | 3, ., 5, ., 2, ., 5 | 0.3778 | 0.8086 | 0.9360 | yes | no |
| Q5WBJ6 | ALLB_BACSK | 3, ., 5, ., 2, ., 5 | 0.3628 | 0.8303 | 0.9397 | yes | no |
| Q0TKD0 | ALLB_ECOL5 | 3, ., 5, ., 2, ., 5 | 0.3481 | 0.8007 | 0.8962 | yes | no |
| Q65LN0 | ALLB_BACLD | 3, ., 5, ., 2, ., 5 | 0.3509 | 0.8047 | 0.8986 | yes | no |
| Q8FK60 | ALLB_ECOL6 | 3, ., 5, ., 2, ., 5 | 0.3481 | 0.8007 | 0.8962 | yes | no |
| Q1AS71 | ALLB_RUBXD | 3, ., 5, ., 2, ., 5 | 0.3640 | 0.8422 | 0.9405 | yes | no |
| B8G120 | ALLB_DESHD | 3, ., 5, ., 2, ., 5 | 0.3473 | 0.8323 | 0.9398 | yes | no |
| A7Z8F5 | ALLB_BACA2 | 3, ., 5, ., 2, ., 5 | 0.3549 | 0.8303 | 0.9273 | yes | no |
| Q1RF23 | ALLB_ECOUT | 3, ., 5, ., 2, ., 5 | 0.3481 | 0.8007 | 0.8962 | yes | no |
| B7MQM2 | ALLB_ECO81 | 3, ., 5, ., 2, ., 5 | 0.3481 | 0.8007 | 0.8962 | yes | no |
| B7ME34 | ALLB_ECO45 | 3, ., 5, ., 2, ., 5 | 0.3481 | 0.8007 | 0.8962 | yes | no |
| B7UKI9 | ALLB_ECO27 | 3, ., 5, ., 2, ., 5 | 0.3481 | 0.8007 | 0.8962 | yes | no |
| Q9RKU5 | ALLB_STRCO | 3, ., 5, ., 2, ., 5 | 0.4253 | 0.8343 | 0.9505 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.2.5 | 0.824 |
| 3rd Layer | 3.5.2 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_LG_IV0194 | allantoinase (EC-3.5.2.5) (504 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pg.C_290028 | hypothetical protein (442 aa) | • | • | • | 0.986 | |||||
 | fgenesh4_pg.C_LG_II002390 | hypothetical protein (289 aa) | • | • | 0.940 | ||||||
 | fgenesh4_pg.C_scaffold_13902000001 | Predicted protein (319 aa) | • | • | • | • | • | 0.894 | |||
 | fgenesh4_pg.C_LG_X000698 | hypothetical protein (442 aa) | • | • | • | 0.866 | |||||
 | estExt_fgenesh4_pg.C_LG_X2235 | RecName- Full=Uricase; EC=1.7.3.3;; Catalyzes the oxidation of uric acid to 5- hydroxyisourate, [...] (308 aa) | • | • | • | 0.822 | |||||
 | eugene3.00012554 | aspartate carbamoyltransferase (EC-2.1.3.2) (332 aa) | • | • | • | 0.713 | |||||
 | eugene3.00290107 | hypothetical protein (253 aa) | • | 0.608 | |||||||
 | grail3.3134000101 | Predicted protein (100 aa) | • | 0.596 | |||||||
 | fgenesh4_pg.C_scaffold_2544000001 | Predicted protein (312 aa) | • | 0.523 | |||||||
 | eugene3.19380001 | Predicted protein (500 aa) | • | 0.505 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 507 | |||
| PLN02795 | 505 | PLN02795, PLN02795, allantoinase | 0.0 | |
| cd01315 | 447 | cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A | 0.0 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 1e-158 | |
| PRK06189 | 451 | PRK06189, PRK06189, allantoinase; Provisional | 1e-122 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 1e-113 | |
| PRK08044 | 449 | PRK08044, PRK08044, allantoinase; Provisional | 3e-98 | |
| cd01318 | 361 | cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg | 2e-71 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 1e-68 | |
| cd01314 | 447 | cd01314, D-HYD, D-hydantoinases (D-HYD) also calle | 1e-67 | |
| cd01302 | 337 | cd01302, Cyclic_amidohydrolases, Cyclic amidohydro | 9e-67 | |
| TIGR00857 | 411 | TIGR00857, pyrC_multi, dihydroorotase, multifuncti | 7e-65 | |
| cd01317 | 374 | cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg | 1e-64 | |
| PRK09060 | 444 | PRK09060, PRK09060, dihydroorotase; Validated | 7e-57 | |
| PRK08323 | 459 | PRK08323, PRK08323, phenylhydantoinase; Validated | 1e-55 | |
| PRK02382 | 443 | PRK02382, PRK02382, dihydroorotase; Provisional | 2e-55 | |
| TIGR02033 | 454 | TIGR02033, D-hydantoinase, D-hydantoinase | 5e-53 | |
| PRK07575 | 438 | PRK07575, PRK07575, dihydroorotase; Provisional | 5e-49 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 1e-45 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 3e-45 | |
| PRK04250 | 398 | PRK04250, PRK04250, dihydroorotase; Provisional | 1e-41 | |
| PRK01211 | 409 | PRK01211, PRK01211, dihydroorotase; Provisional | 1e-36 | |
| PRK00369 | 392 | PRK00369, pyrC, dihydroorotase; Provisional | 8e-31 | |
| PRK07627 | 425 | PRK07627, PRK07627, dihydroorotase; Provisional | 8e-27 | |
| PLN02942 | 486 | PLN02942, PLN02942, dihydropyrimidinase | 2e-26 | |
| PRK08417 | 386 | PRK08417, PRK08417, dihydroorotase; Provisional | 3e-23 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 5e-23 | |
| cd01316 | 344 | cd01316, CAD_DHOase, The eukaryotic CAD protein is | 4e-22 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 3e-13 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 3e-12 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 9e-11 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 4e-10 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 2e-09 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 3e-09 | |
| pfam13147 | 304 | pfam13147, Amidohydro_4, Amidohydrolase | 1e-08 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 2e-07 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 4e-07 | |
| COG0402 | 421 | COG0402, SsnA, Cytosine deaminase and related meta | 4e-07 | |
| PRK15446 | 383 | PRK15446, PRK15446, phosphonate metabolism protein | 8e-07 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 4e-06 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 7e-06 | |
| PRK13308 | 569 | PRK13308, ureC, urease subunit alpha; Reviewed | 1e-05 | |
| TIGR00221 | 380 | TIGR00221, nagA, N-acetylglucosamine-6-phosphate d | 2e-04 | |
| cd01303 | 429 | cd01303, GDEase, Guanine deaminase (GDEase) | 2e-04 | |
| COG3454 | 377 | COG3454, COG3454, Metal-dependent hydrolase involv | 2e-04 | |
| PRK09045 | 443 | PRK09045, PRK09045, N-ethylammeline chlorohydrolas | 3e-04 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 3e-04 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 5e-04 | |
| cd01306 | 325 | cd01306, PhnM, PhnM is believed to be a subunit of | 6e-04 | |
| COG1001 | 584 | COG1001, AdeC, Adenine deaminase [Nucleotide trans | 8e-04 | |
| cd01298 | 411 | cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz | 0.001 | |
| cd01299 | 342 | cd01299, Met_dep_hydrolase_A, Metallo-dependent hy | 0.001 | |
| COG3964 | 386 | COG3964, COG3964, Predicted amidohydrolase [Genera | 0.001 | |
| PRK09237 | 380 | PRK09237, PRK09237, dihydroorotase; Provisional | 0.001 | |
| cd01307 | 338 | cd01307, Met_dep_hydrolase_B, Metallo-dependent hy | 0.001 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 0.002 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 0.002 | |
| TIGR02318 | 376 | TIGR02318, phosphono_phnM, phosphonate metabolism | 0.004 | |
| PRK09061 | 509 | PRK09061, PRK09061, D-glutamate deacylase; Validat | 0.004 |
| >gnl|CDD|178392 PLN02795, PLN02795, allantoinase | Back alignment and domain information |
|---|
Score = 863 bits (2231), Expect = 0.0
Identities = 354/508 (69%), Positives = 414/508 (81%), Gaps = 4/508 (0%)
Query: 1 MENLNLQWRLLPTLTLLAASLFLLVFKDSAKL-SHSECSLLPYNQYWLTSKRIVTPKGVI 59
ME+ LQ R+LP L LLA +F +F + L CSLLP+ + L SKR+VTP GVI
Sbjct: 1 MESALLQLRILPLLALLATLVFFFLFAPALPLQGRDRCSLLPWPHFVLYSKRVVTPAGVI 60
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119
GAVE++ G I+S+ EE+ P++ K V+DYG AV+MPGLIDVH HL++PGRTEWEGFP
Sbjct: 61 PGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFP 120
Query: 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 179
+GTKAAAAGGITTL+DMPLNS PST S ETL+LK++AA+ ++YVDVGFWGGLVPENA+NA
Sbjct: 121 TGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNA 180
Query: 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239
S LE LL+AG LGLKSFMCPSGINDFPMT A+HIK L VLA+Y RPLLVHAE+ E
Sbjct: 181 SVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVES 240
Query: 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299
+L+ D RSYSTYLK+RPPSWE+ AIR+LL VAKDTR G AEGAH+HIVHLSDA
Sbjct: 241 DSRLDADP---RSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAE 297
Query: 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359
SSL+L+ EAK GDS+TVETCPHYLAFSAEEIPDGDTR+KCAPPIRDAAN+E LW+AL+D
Sbjct: 298 SSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLD 357
Query: 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 419
G IDMLSSDHSP+ P+LKLL+EGNFL+AWGGISSLQFVLP TW+ GR YG+TLEQLA WW
Sbjct: 358 GDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWW 417
Query: 420 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479
SERPAKLAG SKGAIA G AD+VVW+PEAEF LD +P++ KH S+S YLG +LSGKV
Sbjct: 418 SERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKV 477
Query: 480 LATISRGNLVYKEGNHAPAACGSPILAT 507
+AT RGNLV+ EG HA ACGSPILA
Sbjct: 478 IATFVRGNLVFLEGKHAKQACGSPILAK 505
|
Length = 505 |
| >gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Score = 605 bits (1563), Expect = 0.0
Identities = 223/463 (48%), Positives = 292/463 (63%), Gaps = 19/463 (4%)
Query: 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
+ + R+VTP GV + +K G I +I + + V+D G V+MPGLID H
Sbjct: 2 LVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEE---VIDAGGLVVMPGLIDTH 58
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164
H+++PGRTEWEGF +GTKAAAAGGITT+IDMPLNS P T + E L+ K++AA+ +++VD
Sbjct: 59 VHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVD 118
Query: 165 VGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224
VGFWGGLVP N L L AGV+G K F+CPSG+++FP + ++E + LA+
Sbjct: 119 VGFWGGLVP---GNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTG 175
Query: 225 RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
L VHAE + +E + R Y YL +RP E AI+ +L +AK+T
Sbjct: 176 SVLAVHAENPEITEALQEQAKAK-GKRDYRDYLASRPVFTEVEAIQRILLLAKET----- 229
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344
G LHIVHLS A + + L+ EA+ G +TVETCPHYL F+AE++PDG T FKCAPPI
Sbjct: 230 --GCRLHIVHLSSAEA-VPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPI 286
Query: 345 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 404
RDAAN+E+LWEAL +G IDM+ SDHSP PELKLL +G+F KAWGGIS LQ LPV +
Sbjct: 287 RDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTE 346
Query: 405 GRKYGV-TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462
+LE +A E PAKL G KG IA+G AD VVW+PE EF +D + +
Sbjct: 347 AVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYY- 405
Query: 463 KHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505
IS Y+GR L G+V ATI RG +VY++G G +L
Sbjct: 406 -KNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLLL 447
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 457 bits (1178), Expect = e-158
Identities = 200/460 (43%), Positives = 274/460 (59%), Gaps = 21/460 (4%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ R++ P G V +K G I +I + P +++D G V+ PG++D H H
Sbjct: 4 IRGGRVILPNGEREADVGVKGGKIAAIGPDILGP----AAKIIDAGGLVVFPGVVDTHVH 59
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166
+++PGRTEWEGF +GT+AAAAGGITT IDMPLNS P+T + +L+ K +AA+ ++ VDVG
Sbjct: 60 INEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVG 119
Query: 167 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
FWGGLVP YN L L AGV+G K+F+ PSG ++FP + + +G+ LAR +
Sbjct: 120 FWGGLVP---YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQL 176
Query: 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
LLVHAE + + E YL +RP E AIR L +AK T
Sbjct: 177 LLVHAENPAITSA-LGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT------- 228
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
G +H+VHLS ++ +++L+ EAK G +TVETCPHYL +AEE+PDG T KCAPPIRD
Sbjct: 229 GCRVHVVHLS-SAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRD 287
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG- 405
AN+E LWEAL++G ID + SDHSP P+LK G+F KAWGGI+ LQ L V +
Sbjct: 288 LANQEGLWEALLNGLIDCVVSDHSPCTPDLK--RAGDFFKAWGGIAGLQSTLDVMFDEAV 345
Query: 406 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465
+K G+ LE +A + PAK G KG IA G AD V +P+ + L D + +H
Sbjct: 346 QKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPDDLYY-RHK 404
Query: 466 SISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505
+S Y+GR + G+V AT RG +Y + A G +L
Sbjct: 405 -VSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAPKGQLLL 443
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 364 bits (936), Expect = e-122
Identities = 173/446 (38%), Positives = 244/446 (54%), Gaps = 27/446 (6%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
+VTP+GV + IK G I I E P +++D + PG+IDVH H ++PG
Sbjct: 12 VVTPEGVYRADIGIKNGKIAEIAPEISSP----AREIIDADGLYVFPGMIDVHVHFNEPG 67
Query: 112 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL 171
RT WEGF +G+ A AAGG TT DMPLNS P T++ E L K + A ++ VD WGGL
Sbjct: 68 RTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGL 127
Query: 172 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231
VP N L L AGV+G K+FM SG ++F ++ + EG+ +A + L +HA
Sbjct: 128 VPG---NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHA 184
Query: 232 E---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288
E + + + + T D R YL++RP E A++ L A++T G
Sbjct: 185 ESDALTRHLTTQARQQGKT-DVRD---YLESRPVVAELEAVQRALLYAQET-------GC 233
Query: 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 348
LH VH+S ++ L+ EAK G ++VETCPHYL F+ E+ KCAPP+R +
Sbjct: 234 PLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRS 292
Query: 349 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RK 407
KE+LW L+ G IDM+SSDHSP PELK + +F WGGIS Q L V + G +
Sbjct: 293 QKEELWRGLLAGEIDMISSDHSPCPPELK--EGDDFFLVWGGISGGQSTLLVMLTEGYIE 350
Query: 408 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467
G+ LE +A + PAK G KG + +G AD V+ + + + L + + +H
Sbjct: 351 RGIPLETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKED-LFYRHK-Q 408
Query: 468 SAYLGRRLSGKVLATISRGNLVYKEG 493
S Y GR G+V+AT RG VY++G
Sbjct: 409 SPYEGRTFPGRVVATYLRGQCVYQDG 434
|
Length = 451 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 341 bits (877), Expect = e-113
Identities = 153/445 (34%), Positives = 228/445 (51%), Gaps = 28/445 (6%)
Query: 50 KRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
R+V P + IK+G I +I + +++D +++PGL+D+H H +
Sbjct: 8 ARVVDPGEDEVADILIKDGKIAAIGKN---LEPTSGAEIIDAKGLLVLPGLVDLHVHFRE 64
Query: 110 PGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG E F +G++AAAAGG+TT++DMP P + E L+ K++ A+ + VD F+G
Sbjct: 65 PGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPID-TAEALEDKLERAKGKSVVDYAFYG 123
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
GL N LE G K FM S + ++E L A +LV
Sbjct: 124 GLTK---GNLGKLELTERGVEAGFKGFMDDST----GALDDDVLEEALEYAAELGALILV 176
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289
HAE + V E R+ L RPP E +AI L +A+ T GA
Sbjct: 177 HAEDDDLIAEGVMNEG----LRAPELGLAGRPPIAEASAIARDLELARAT-------GAR 225
Query: 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 349
+HI H+S S ++L+ AK G +T E PH+L E+I D T K PP+RD +
Sbjct: 226 VHICHISTKES-VELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEED 284
Query: 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 409
+E LWEAL DG ID+++SDH+P E K L F +A GI L+ LP+ + +K
Sbjct: 285 REALWEALKDGVIDVIASDHAPHTLEEKRLP---FEEAPSGIPGLETALPLLLTLVKKGR 341
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 469
++LE+L S PA++ G KGAI G ADLV+ +P+ E+ + ++ K + S
Sbjct: 342 LSLERLVELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRA-EELYSKAKN-SP 399
Query: 470 YLGRRLSGKVLATISRGNLVYKEGN 494
+ G L G+V+ATI RG +VY++G
Sbjct: 400 FEGFELKGRVVATILRGKVVYEDGE 424
|
Length = 430 |
| >gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = 3e-98
Identities = 154/438 (35%), Positives = 232/438 (52%), Gaps = 37/438 (8%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
+ +K G I +I + +V+D V+ PG++D H H+ +PGR+ WEG+ +GT
Sbjct: 23 IAVKGGKIAAIGQD-----LGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGT 77
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
+AAA GGITT+I+MPLN P+T+ +++LK DAA+ ++ +D GGLV YN L
Sbjct: 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVS---YNLDRL 134
Query: 183 EALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEM----- 233
L GV+G K F+ G NDF N +G L +P+LVH E
Sbjct: 135 HELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICD 194
Query: 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 293
E G E K E + Y+ +RP E AIR +L +AK G LH+
Sbjct: 195 ELGEE--AKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVC 241
Query: 294 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 353
H+S + ++ + A+ G +T E+CPHY ++ + T KC+PPIRD N++ +
Sbjct: 242 HIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGM 300
Query: 354 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 412
WE L +G ID L SDHSP PE+K GN ++AWGGI+ LQ + V + +K G++L
Sbjct: 301 WEKLFNGEIDCLVSDHSPCPPEMK---AGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSL 357
Query: 413 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 472
+ A + G KG IA G AD V +P + + L N+ + +H +S Y+G
Sbjct: 358 PMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNED-LEYRH-KVSPYVG 415
Query: 473 RRLSGKVLATISRGNLVY 490
R + ++ TI RG+++Y
Sbjct: 416 RTIGARITKTILRGDVIY 433
|
Length = 449 |
| >gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 2e-71
Identities = 118/393 (30%), Positives = 177/393 (45%), Gaps = 35/393 (8%)
Query: 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 154
+I+PG+ID+H H +PG T E F SG++AAAAGG+TT++DMP N+ P T + E L K+
Sbjct: 3 LILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKL 61
Query: 155 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 214
A + VD G + G+ + L+ AG K FM S + +
Sbjct: 62 RLAAAKSVVDYGLYFGVTGSE--DLEELDKAPPAGY---KIFMGDSTGDLL------DDE 110
Query: 215 EGL-SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 273
E L + A + HAE E + K R A L
Sbjct: 111 ETLERIFAEGSVLVTFHAEDEDRLRENRKELKGESAHPRI------RDAEAAAVATARAL 164
Query: 274 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333
+A+ GA LHI H+S + L K +TVE PH+L E+
Sbjct: 165 KLARRH-------GARLHICHVSTP----EELKLIKKAKPGVTVEVTPHHLFLDVEDYDR 213
Query: 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393
T K PP+R +++ L +AL DG ID+++SDH+P E K + A GI
Sbjct: 214 LGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEK---RKGYPAAPSGIPG 270
Query: 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
++ LP+ + K ++L ++ S PA++ G +KG IA G ADL V + + E
Sbjct: 271 VETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERT 330
Query: 454 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 486
+ H K + + G ++G + TI RG
Sbjct: 331 I-RAEEFHSKAG-WTPFEGFEVTGFPVMTIVRG 361
|
This group contains the archeal members of the DHOase family. Length = 361 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 1e-68
Identities = 144/476 (30%), Positives = 232/476 (48%), Gaps = 83/476 (17%)
Query: 45 YWLTSKRIVTPKGVISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
+ + R++ PKG+ A V I +G I +I + ++ +V+D V+ PGL+D+
Sbjct: 3 ILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE----AEGAEVIDATGLVVAPGLVDL 58
Query: 104 HAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H HL +PG+ + E +G++AAAAGG TT++ MP N+ P + E ++ +D A++ V
Sbjct: 59 HVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLV 117
Query: 164 DV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIK 214
DV G G + E AL AGV+ +D P+ +A ++
Sbjct: 118 DVLPVGAITKGLAGEELTE-------FGALKEAGVVAFS--------DDGIPVQDARLMR 162
Query: 215 EGLSVLARYKRPL-LVHAEMEKGSERHVKLEDDTLDTRSYSTY--------------LKT 259
L Y + L L+ A+ ED +L T L
Sbjct: 163 RAL----EYAKALDLLIAQHC---------EDPSL------TEGGVMNEGEVSARLGLPG 203
Query: 260 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
P EE I R++L A+ T GA +HI H+S A S ++L+ AK G +T E
Sbjct: 204 IPAVAEEVMIARDVLL-AEAT-------GARVHICHVSTAGS-VELIRWAKALGIKVTAE 254
Query: 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378
PH+L + E++ D +K PP+R ++E L E L DG ID +++DH+P E K
Sbjct: 255 VTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKE 314
Query: 379 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAI 437
+ F A GI+ L+ L + ++ K G+ LEQL + PA++ G + G +A
Sbjct: 315 CE---FEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILG-LPAGPLAE 370
Query: 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKVLATISRGNLVYKE 492
G ADLV+++PEAE+ +D + + ++G +L GKV+ TI G +VY++
Sbjct: 371 GEPADLVIFDPEAEWTVDGE---DFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423
|
Length = 423 |
| >gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 1e-67
Identities = 132/456 (28%), Positives = 209/456 (45%), Gaps = 35/456 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
IVT G + I++G I++I + P + +D ++PG ID H HL+ P
Sbjct: 7 TIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEV---IDATGKYVLPGGIDPHTHLELP 63
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F SGT+AAAAGG TT+ID + + ++ E ++ A+ + +D GF
Sbjct: 64 FMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSL-LEAVEKWRGKADGKSVIDYGFH 122
Query: 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228
+ L L+ G+ K FM G+ M + + + L ++
Sbjct: 123 MIITDWTDSVIEELPELVKKGISSFKVFMAYKGLL---MVDDEELLDVLKRAKELGALVM 179
Query: 229 VHAEMEKGS---ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285
VHAE G E KL Y +RPP E A + +A+
Sbjct: 180 VHAE--NGDVIAELQKKLLAQGKTGPEYHAL--SRPPEVEAEATARAIRLAELA------ 229
Query: 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCAP 342
GA L+IVH+S + + D + A+ G + ETCP YL + ++ C+P
Sbjct: 230 -GAPLYIVHVS-SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSP 287
Query: 343 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402
P+R ++E LW+ L G + + SDH P K + +F K G+ ++ +P+ W
Sbjct: 288 PLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLW 347
Query: 403 SYGRKYG-VTLEQLASWWSERPAKLAG---QVSKGAIAIGNHADLVVWEPEAEFELDNDH 458
S G G +TLE+ S PAK+ G + KG IA+G+ ADLV+W+P AE + D
Sbjct: 348 SEGVAKGRITLEKFVELTSTNPAKIFGLYPR--KGTIAVGSDADLVIWDPNAEKTISADT 405
Query: 459 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
H + + G ++ G + TISRG +V ++G
Sbjct: 406 H-HHN-VDYNIFEGMKVKGWPVVTISRGKVVVEDGE 439
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447 |
| >gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 9e-67
Identities = 121/389 (31%), Positives = 191/389 (49%), Gaps = 54/389 (13%)
Query: 95 VIMPGLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 153
+++PG ID+H HL DPG T ++ F SG++AAAAGG+TT+IDMP N+ P I ++LK
Sbjct: 2 LVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELK 60
Query: 154 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 213
+ AE+ YVD F G+ P + + L+ L +AG+ LK FM F + + + +
Sbjct: 61 IKLAEESSYVDFSFHAGIGPGDVTDE--LKKLFDAGINSLKVFMNYYFGELFDVDDGT-L 117
Query: 214 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 273
+A P++VHAE
Sbjct: 118 MRTFLEIASRGGPVMVHAER--------------------------------------AA 139
Query: 274 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333
+A++ GA++HI H+S + L+L+ AK G +T E CPH+L +
Sbjct: 140 QLAEEA-------GANVHIAHVSSGEA-LELIKFAKNKGVKVTCEVCPHHLFLDESMLRL 191
Query: 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393
K PP+R ++E LWE + +G ID ++SDH+P E K + KA G
Sbjct: 192 NGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPG 250
Query: 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
L+ LP+ + G K G++LE L SE PA++ G KG IA+G ADLV+ +P+ E++
Sbjct: 251 LETRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWK 310
Query: 454 LDNDHPVHMKHPSISAYLGRRLSGKVLAT 482
+ + + + G ++GK ++T
Sbjct: 311 VTAEE--IESKADWTPFEGMEVTGKPVST 337
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337 |
| >gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 7e-65
Identities = 136/408 (33%), Positives = 200/408 (49%), Gaps = 28/408 (6%)
Query: 88 VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST 147
V+D +++PG ID+H HL DPG E SG+KAAA GG TT+ DMP N+ P +
Sbjct: 29 VIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTP 87
Query: 148 ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA--LLNAGVLGLKSFMCPSGI-ND 204
ETL+ K+ +K VDV +GG V + EA L AG +G S + +
Sbjct: 88 ETLEWKLQRLKKVSLVDVHLYGG-VTQGNQGKELTEAYELKEAGAVGRMFTDDGSEVQDI 146
Query: 205 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264
M A V P+ +HAE V E + L RPP
Sbjct: 147 LSMRRALEYAAIAGV------PIALHAEDPDLIYGGVMHE----GPSAAQLGLPARPPEA 196
Query: 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 324
EE A+ LL +AK G +HI H+S SL+L+++AK+ G IT E PH+L
Sbjct: 197 EEVAVARLLELAKHA-------GCPVHICHISTK-ESLELIVKAKSQGIKITAEVTPHHL 248
Query: 325 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 384
S E++ D K PP+R+ ++ L E L DG ID++++DH+P E K F
Sbjct: 249 LLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EF 305
Query: 385 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 444
A GI L+ LP+ K ++L+ L S PA++ G KG + GN AD+
Sbjct: 306 AAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADIT 365
Query: 445 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
V++ + E+ ++ + + K + + G L GK +ATI RG +VY++
Sbjct: 366 VFDLKKEWTINAET-FYSK-AKNTPFEGMSLKGKPIATILRGKVVYED 411
|
In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411 |
| >gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 1e-64
Identities = 131/400 (32%), Positives = 199/400 (49%), Gaps = 28/400 (7%)
Query: 85 TGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST 144
+V+D ++ PGL+D+H HL +PG E SG KAAAAGG TT++ MP N++P
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVI 59
Query: 145 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGIN 203
+ ++L + A+ V V G L + + LL AG +G +
Sbjct: 60 DNPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGF-------SDD 112
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 263
P+ +A ++ L A P++VH E + + + + +R L PP
Sbjct: 113 GKPIQDAELLRRALEYAAMLDLPIIVHPE-DPSLAGGGVMNEGKVASRLG---LPGIPPE 168
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323
E + L +A+ T GA +H HLS A S L+L+ +AK G +T E PH+
Sbjct: 169 AETIMVARDLELAEAT-------GARVHFQHLSTARS-LELIRKAKAKGLPVTAEVTPHH 220
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 383
L E + DT K PP+R ++E L EAL DG ID ++SDH+P E K L
Sbjct: 221 LLLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLP--- 277
Query: 384 FLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 442
F +A GI L+ LP+ W+ K G+ TL L S PAK+ G + G + +G AD
Sbjct: 278 FAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILG-LPPGRLEVGAPAD 336
Query: 443 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 482
LV+++P+AE+ +D + K + + G++L G+VLAT
Sbjct: 337 LVLFDPDAEWIVDEET-FRSK-SKNTPFDGQKLKGRVLAT 374
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374 |
| >gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 7e-57
Identities = 136/474 (28%), Positives = 223/474 (47%), Gaps = 72/474 (15%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
+V P G + I++G I +I + G+V+D ++PG+ID H +PG
Sbjct: 14 VVNPDGEGRADIGIRDGRIAAIGD----LSGASAGEVIDCRGLHVLPGVIDSQVHFREPG 69
Query: 112 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL 171
E +G++AA GG+T + +MP N++P T + E L K+ A R++ D F+ G
Sbjct: 70 LEHKEDLETGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGG 128
Query: 172 VPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPMTNASHIKEGL-SVLARYKRP 226
+NA + LE L G G+K FM S + D EGL +L +R
Sbjct: 129 TRDNADELAELERL--PGCAGIKVFMGSSTGDLLVED---------DEGLRRILRNGRRR 177
Query: 227 LLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSW--EEAAI---RELLTVAKDT 279
H+E E + +++E D S++ P W EEAA+ R L+ +A++T
Sbjct: 178 AAFHSEDEYRLRERKGLRVEGD------PSSH-----PVWRDEEAALLATRRLVRLARET 226
Query: 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-DTRF 338
G +H++H+S A +D L + K D TVE PH+L +A E + T
Sbjct: 227 -------GRRIHVLHVSTA-EEIDFLADHK---DVATVEVTPHHLTLAAPECYERLGTLA 275
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW----GGISSL 394
+ PPIRDA +++ LW + G +D+L SDH+P E K K + G++ +
Sbjct: 276 QMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK-------AKPYPASPSGMTGV 328
Query: 395 QFVLPVTWSY---GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
Q ++P+ + GR ++LE+ S PA++ G KG IA+G AD + + +
Sbjct: 329 QTLVPIMLDHVNAGR---LSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRR 385
Query: 452 FELDNDHPVHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504
+ N+ + + Y G+ ++G + TI RG V +G G P+
Sbjct: 386 ETITNE---WIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGELVGPPTGEPV 436
|
Length = 444 |
| >gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-55
Identities = 128/474 (27%), Positives = 208/474 (43%), Gaps = 75/474 (15%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+VT V I++G I +I + +V+D +MPG ID H H++ P
Sbjct: 9 TVVTADDTYKADVLIEDGKIAAIGANLG-------DEVIDATGKYVMPGGIDPHTHMEMP 61
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA----AEKRIYVD 164
G + F +GT+AAA GG TT+ID L ++L+ ++A A + +D
Sbjct: 62 FGGTVSSDDFETGTRAAACGGTTTIIDFALQP-----KGQSLREALEAWHGKAAGKAVID 116
Query: 165 VGFWGGL--VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
GF + E + + L+ G+ K FM M + + L A
Sbjct: 117 YGFHMIITDWNEVVLDE--MPELVEEGITSFKLFM---AYKGALMLDDDELLRALQRAAE 171
Query: 223 YKRPLLVHAE------------MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 270
+VHAE + +G T L +RPP E A
Sbjct: 172 LGALPMVHAENGDAIAYLQAKLLAEG------------KTGPEYHAL-SRPPEVEGEATN 218
Query: 271 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330
+ +A+ GA L+IVH+S +L+ + A+ G + ETCP YL E
Sbjct: 219 RAIMLAELA-------GAPLYIVHVS-CKEALEAIRRARARGQRVFGETCPQYLLLDESE 270
Query: 331 I--PDGDT--RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFL 385
PD ++ +PP+RD +++ LW L DG + ++++DH P + K L G+F
Sbjct: 271 YDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFT 330
Query: 386 KAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG---QVSKGAIAIGNHA 441
K G ++ +P+ +S G G +TL + S PAK+ G + KG IA+G A
Sbjct: 331 KIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPR--KGTIAVGADA 388
Query: 442 DLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISRGNLVYKEG 493
D+V+W+P A + H ++ + Y G ++G + T+SRG +V ++G
Sbjct: 389 DIVIWDPNATKTISAS----TLHSNVDYNPYEGFEVTGWPVTTLSRGEVVVEDG 438
|
Length = 459 |
| >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 2e-55
Identities = 132/401 (32%), Positives = 197/401 (49%), Gaps = 30/401 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
R+ + V I G I ++ + D S + +V+D +++PG IDVH H +P
Sbjct: 10 RVYYNNSLQPRDVRIDGGKITAVGKDLD---GSSSEEVIDARGMLLLPGGIDVHVHFREP 66
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170
G T E + +G+++AAAGG+TT++D P N+DP T+ E+ K + A ++ VD G GG
Sbjct: 67 GYTHKETWYTGSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGG 125
Query: 171 LVPENAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
+ N LE+L GV L + FM S + + +E L+ AR V
Sbjct: 126 VTG----NWDPLESLWERGVFALGEIFMADS-TGGMGI-DEELFEEALAEAARLGVLATV 179
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289
HAE E + KL D ++S Y RP + E AA+ L VA +T GA
Sbjct: 180 HAEDEDLFDELAKLLKGDADADAWSAY---RPAAAEAAAVERALEVASET-------GAR 229
Query: 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 349
+HI H+S +D IT E PH+L S + T K PP+R
Sbjct: 230 IHIAHIS-TPEGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKR 283
Query: 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 409
+E LWE L DG ID+++SDH+P E K D A G+ ++ +LP+ + RK
Sbjct: 284 REALWERLNDGTIDVVASDHAPHTREEKDAD---IWDAPSGVPGVETMLPLLLAAVRKNR 340
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 450
+ LE++ + PA++ G KG IA G ADLV+ +P+A
Sbjct: 341 LPLERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDA 381
|
Length = 443 |
| >gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 5e-53
Identities = 127/463 (27%), Positives = 210/463 (45%), Gaps = 37/463 (7%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
+ +V V V I+ G I+++ S P + V+D ++PG IDVH
Sbjct: 2 LIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVE---VIDATGKYVLPGGIDVHT 58
Query: 106 HLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM--PLNSDPSTISTETLKLKVDAAEKRI 161
HL+ P G + F +GTKAAAAGG TT+ID P + T + ET K AE +
Sbjct: 59 HLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEK---AEGKS 115
Query: 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 221
+D GF + N + + G+ SF + M + + E L
Sbjct: 116 VIDYGFHMMITDWNDHVLEEHIPEVVEE--GITSFKVFMAYKNLLMVDDEELFEILKRAK 173
Query: 222 RYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277
L VHAE + + R + + + S RPP E A+ + +A
Sbjct: 174 ELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALS-----RPPESEAEAVARAIALAA 228
Query: 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGD 335
D P L++VH+S A + +D + EA+ G + ETCP YL + P +
Sbjct: 229 --LADAP-----LYVVHVSTADA-VDEIAEAREKGQPVYGETCPQYLVLDDTAYDKPGFE 280
Query: 336 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISS 393
++ C+PP+R+ +++ LW AL G + + SDH P + K + + +F K G
Sbjct: 281 GAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPG 340
Query: 394 LQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAE 451
++ + + + G G +TLE+ S PAK+ KG IA+G+ AD+V+W+P
Sbjct: 341 VEERMTLLFDEGVAKGRITLEKFVELTSTNPAKIFNMYPQKGTIAVGSDADIVIWDPNRT 400
Query: 452 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ + H + + + G ++ G V++ +SRG +V ++G
Sbjct: 401 TVISAET--HHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDGQ 441
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454 |
| >gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 5e-49
Identities = 128/470 (27%), Positives = 206/470 (43%), Gaps = 62/470 (13%)
Query: 51 RIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
RI+ P G ++ G V +++G I++I E + V+D ++PG+ID H +
Sbjct: 11 RILLPSGELLLGDVLVEDGKIVAIAPEIS---ATAVDTVIDAEGLTLLPGVIDPQVHFRE 67
Query: 110 PGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG E + ++A A GG+T+ ++MP N+ P T + L K+ A ++ V+ GF+
Sbjct: 68 PGLEHKEDLFTASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFI 126
Query: 170 GLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASH-----IKEGL--SVLA 221
G P+N L LL A G+K FM +SH +E + A
Sbjct: 127 GATPDN------LPELLTANPTCGIKIFM-----------GSSHGPLLVDEEAALERIFA 169
Query: 222 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI---RELLTVAKD 278
R + VHAE + D +S EEAA+ R L ++K
Sbjct: 170 EGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQD------EEAALLATRLALKLSKK 223
Query: 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 338
+ LHI+HLS A +LL + K + +T E P +L + + T
Sbjct: 224 YQR-------RLHILHLSTAIE-AELLRQDKPS--WVTAEVTPQHLLLNTDAYERIGTLA 273
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398
+ PP+R + E LW+AL DG ID +++DH+P E K + + G+ ++ L
Sbjct: 274 QMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQP---YPNSPSGMPGVETSL 330
Query: 399 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 458
P+ + + T+ Q+ W S A+ G +KG IA G ADLV+ +L+
Sbjct: 331 PLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVL------VDLNTYR 384
Query: 459 PVH----MKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504
PV + S + G L+G + TI G +V+ G G +
Sbjct: 385 PVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRGQAL 434
|
Length = 438 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 1e-45
Identities = 127/486 (26%), Positives = 196/486 (40%), Gaps = 69/486 (14%)
Query: 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101
+ + + RIV + G V I+ G I I S V+D ++PG+I
Sbjct: 1 MKRILIKNARIVNEGKIFEGDVLIENGRIAKIASSIS---AKSADTVIDAAGRYLLPGMI 57
Query: 102 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 161
D H +PG T S ++AA AGGIT+ ++MP N++P T + E L+ K A +R
Sbjct: 58 DDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRS 116
Query: 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN---DFPMTNASHIKEGLS 218
+ F+ G + N ++ L V G+K FM S N D P
Sbjct: 117 LANYSFYFG-ATND--NLDEIKRLDPKRVCGVKVFMGASTGNMLVDNP-----------E 162
Query: 219 VLARYKR----PLLVHAEME----KGSERHVKLEDDTLDT------RSYSTYLKTRPPSW 264
L R R + H E ++ + D + RS
Sbjct: 163 TLERIFRDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRS------------ 210
Query: 265 EEAAIR------ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
EA + L AK G LH++H+S A L L IT E
Sbjct: 211 AEACYKSSSLAVSL---AKKH-------GTRLHVLHISTAKE-LSLFENGPLAEKRITAE 259
Query: 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378
C H+L F + KC P I+ A+++E L +AL D ID++++DH+P E K
Sbjct: 260 VCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEK- 318
Query: 379 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 438
+G + +A G+ +Q LP + ++LE++ S PA L +G I G
Sbjct: 319 --QGPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREG 376
Query: 439 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 498
ADLV+ + + + + + + K S + GR +V T G LVY G +
Sbjct: 377 YWADLVLVDLNSPWTVTKE-NILYK-CGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVES 434
Query: 499 ACGSPI 504
G +
Sbjct: 435 CRGQRL 440
|
Length = 444 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 3e-45
Identities = 130/487 (26%), Positives = 211/487 (43%), Gaps = 62/487 (12%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+VT + I+ G I ++ + +D +++PG +D H H+D P
Sbjct: 12 TVVTATDTFQADIGIRGGRIAALGE-----GLGPGAREIDATGRLVLPGGVDSHCHIDQP 66
Query: 111 ---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167
G + F +GT +AA GG TT+I ++ E ++ A + +D F
Sbjct: 67 SGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLR-EAVEDYHRRAAGKAVIDYAF 125
Query: 168 WGGLV---PENAYNASALEALLNAGVLGLKSFMCPSG--INDFPMTNASHIKEGLSVLAR 222
L+ P L AL+ G K FM ++D + + L+V R
Sbjct: 126 --HLIVADPTEEVLTEELPALIAQGYTSFKVFMTYDDLKLDDRQIL------DVLAVARR 177
Query: 223 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST---YLKTRPPSWEEAAIRELLTVAKDT 279
+ ++VHAE + + L + + +RP E A + +A+
Sbjct: 178 HGAMVMVHAE----NHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAE-- 231
Query: 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---- 335
D P + IVH+S + + + A+ G I ETCP YL +AE++ D
Sbjct: 232 LVDVP-----ILIVHVSGREA-AEQIRRARGRGLKIFAETCPQYLFLTAEDL-DRPGMEG 284
Query: 336 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP---TVPELKLL--DEGNFLKAWGG 390
++ C+PP RD AN+E +W L DG ++ SSDH+P + KL +F G
Sbjct: 285 AKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANG 344
Query: 391 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEP 448
I ++ LP+ +S G G ++L + + S PAKL G KGAIAIG AD+ +W+P
Sbjct: 345 IPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDP 404
Query: 449 EAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISRGNLVYKEGN-HAPA------A 499
+ E + N H + + Y G R++G + +SRG +V ++G A A
Sbjct: 405 DREVTITNA----DLHHAADYTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLA 460
Query: 500 CGSPILA 506
P A
Sbjct: 461 RSLPDRA 467
|
Length = 477 |
| >gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 1e-41
Identities = 119/436 (27%), Positives = 191/436 (43%), Gaps = 60/436 (13%)
Query: 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG 117
++ G + I+ G I I R+ K +V+ +I+PGLIDVH HL D + E
Sbjct: 12 IVEGGIGIENGRISKI-----SLRDLKGKEVIKVKGGIILPGLIDVHVHLRDFEESYKET 66
Query: 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY 177
SGTKAA GGIT + DMP N+ P + +T + ++ AEK+ Y D L+ N
Sbjct: 67 IESGTKAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADY-ALNFLIAGNCE 124
Query: 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237
A ++A K FM S T + A + VHAE
Sbjct: 125 KAEEIKADFY------KIFMGAS-------TGGIFSENFEVDYACAPGIVSVHAE----- 166
Query: 238 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 297
D + + RPP E AI L K + LHI H+S
Sbjct: 167 -----------DPELIREFPE-RPPEAEVVAIERALEAGKKLKKP-------LHICHIST 207
Query: 298 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL 357
L L++++ N ++ E PH+L + ++ K PP+R +++ LWE
Sbjct: 208 K-DGLKLILKS--NLPWVSFEVTPHHLFLTRKDYERNP-LLKVYPPLRSEEDRKALWENF 263
Query: 358 MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS 417
I +++SDH+P E K + G GI L+ +P+ K ++L +
Sbjct: 264 --SKIPIIASDHAPHTLEDK--EAGA-----AGIPGLETEVPLLLDAANKGMISLFDIVE 314
Query: 418 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477
+ PA++ G + G I GN+A+ V++ + E+ + + ++ K + Y G +L G
Sbjct: 315 KMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAEE-LYTK-AGWTPYEGFKLKG 371
Query: 478 KVLATISRGNLVYKEG 493
KV+ TI RG +V ++
Sbjct: 372 KVIMTILRGEVVMEDD 387
|
Length = 398 |
| >gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 1e-36
Identities = 106/406 (26%), Positives = 175/406 (43%), Gaps = 56/406 (13%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120
+E+++G I SI ++D K + I+P D+H H PG TE E F +
Sbjct: 16 LEIEVEDGKIKSI--KKDAGNIGKK-----ELKGAILPAATDIHVHFRTPGETEKEDFST 68
Query: 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 180
GT +A GG T ++DMP N++ K+ + YVD + NA
Sbjct: 69 GTLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA---- 123
Query: 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG-LSVLARYKRPLLVHAEMEKGSER 239
+L+ +GLK +M + TN + I+ G + + P+ HAE+ + +
Sbjct: 124 ---LILDERSIGLKVYMGGT-----TNTNGTDIEGGEIKKINEANIPVFFHAELSECLRK 175
Query: 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299
H ++++ + RP E A++ + + T+ I H+S
Sbjct: 176 H------QFESKNLRDHDLARPIECEIKAVKYVKNLDLKTK----------IIAHVSSID 219
Query: 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359
L E PH+L +++P G + K PP+RD +E+L E +
Sbjct: 220 VIGRFLREVT-----------PHHL-LLNDDMPLG-SYGKVNPPLRDRWTQERLLEEYIS 266
Query: 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 419
G D+LSSDH+P E D+ F A GI ++ +P+ + +K + L+ L
Sbjct: 267 GRFDILSSDHAPHTEE----DKQEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTA 322
Query: 420 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465
ERPA L G + KG I G AD + ++ ++ ND +H K P
Sbjct: 323 IERPASLFG-IKKGKIEEGYDADFMAFDFTNIKKI-NDKRLHSKCP 366
|
Length = 409 |
| >gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-31
Identities = 110/442 (24%), Positives = 175/442 (39%), Gaps = 85/442 (19%)
Query: 67 EGNIISIVSEEDWPRNSKTGQ-----VVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPS 120
I I D R K + +D + +I+PG ID+H HL + E S
Sbjct: 12 GKEIKEICINFD--RRIKEIKSRCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVAS 69
Query: 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 180
GT AA GG+T + DMP N+ P + E + K+ E VD + G V ++
Sbjct: 70 GTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAELEYYSRVDYFVYSG-VTKD----- 122
Query: 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 240
E + + G K F P + +E VL + ++ ++H E+
Sbjct: 123 -PEKVDKLPIAGYKIF--PEDLER---------EETFRVLLKSRKLKILHPEV------P 164
Query: 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 300
+ L+ + K R W E A + + ++HI H S+ +
Sbjct: 165 LALKSNR----------KLRRNCWYEIAALYYVK-----------DYQNVHITHASNPRT 203
Query: 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360
+ AK G TV+ PH+L + E D K PPIRD + L +AL +
Sbjct: 204 ----VRLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE- 252
Query: 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 420
+D ++SDH+P KL + GI++L F P ++ K +++++ S
Sbjct: 253 -VDAIASDHAPHSSFEKLQ---PYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELIS 308
Query: 421 ERPAKLAGQVSKGAIAIGNHADLVV-----WEPEAEFELDNDHPVHMKHPSISAYLGRRL 475
PA++ G + G I G A+ V W ++ + P+ G L
Sbjct: 309 TNPARILG-IPYGEIKEGYRANFTVIQFEDWRYSTKYSKVIETPL----------DGFEL 357
Query: 476 SGKVLATISRGNLVYKEGNHAP 497
V ATI +G L Y EG P
Sbjct: 358 KASVYATIVQGKLAYLEGEVFP 379
|
Length = 392 |
| >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-27
Identities = 110/442 (24%), Positives = 195/442 (44%), Gaps = 60/442 (13%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 124
+ G I +I P + +D ++ PGL+D+ A L +PG S A
Sbjct: 25 VAAGKIAAIGQA---PAGFNADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESEMAA 81
Query: 125 AAAGGITTLI-----DMPLNSDPSTISTETLKLKVDAAEK-RIY----VDVGFWGGLVPE 174
A AGG+T+L+ D L+ +P + E LK + + +Y + VG G ++ E
Sbjct: 82 AVAGGVTSLVCPPDTDPVLD-EPGLV--EMLKFRARNLNQAHVYPLGALTVGLKGEVLTE 138
Query: 175 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-----RPLLV 229
L AG +G + P+ + + L + + RPL
Sbjct: 139 MV-------ELTEAGCVGFSQ-------ANVPVVDTQVLLRALQYASTFGFTVWLRPLDA 184
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289
+ +G + +R L P + E A+ + + + T GA
Sbjct: 185 F--LGRGGVAA----SGAVASR---LGLSGVPVAAETIALHTIFELMRVT-------GAR 228
Query: 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 349
+H+ LS A+ + L+ AK G +T + +++ +I D++F+ PP+R +
Sbjct: 229 VHLARLSSAAG-VALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRD 287
Query: 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 409
+E + AL DG ID + SDH+P + KLL F +A G + L+ +LP+T + +
Sbjct: 288 REAIRAALADGTIDAICSDHTPVDDDEKLLP---FAEATPGATGLELLLPLTLKWADEAK 344
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-S 468
V L + + + PA++ G + G +A G ADL V++P+A + ++ P +K +
Sbjct: 345 VPLARALARITSAPARVLG-LPAGRLAEGAPADLCVFDPDAHWRVE---PRALKSQGKNT 400
Query: 469 AYLGRRLSGKVLATISRGNLVY 490
+LG L G+V AT+ G + +
Sbjct: 401 PFLGYELPGRVRATLVAGQVAF 422
|
Length = 425 |
| >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 114/445 (25%), Positives = 192/445 (43%), Gaps = 39/445 (8%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 120
V +++G I+++ P + + V+D +MPG ID H HL P G + F S
Sbjct: 25 VYVEDGIIVAVAPNLKVPDDVR---VIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFS 81
Query: 121 GTKAAAAGGITTLIDMPLNSDPSTIST-ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 179
G AA AGG T ID + + + ++ E + K AEK +D GF + + +
Sbjct: 82 GQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKK---AEKSC-MDYGFHMAITKWDDTVS 137
Query: 180 SALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----ME 234
+E L+ G+ K FM G M + EG +VHAE +
Sbjct: 138 RDMETLVKEKGINSFKFFMAYKGS---LMVTDELLLEGFKRCKSLGALAMVHAENGDAVF 194
Query: 235 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 294
+G +R ++L + + S RPP E A + +AK T L++VH
Sbjct: 195 EGQKRMIELGITGPEGHALS-----RPPLLEGEATARAIRLAKFVNTP-------LYVVH 242
Query: 295 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC----APPIRDAANK 350
+ + +++ + A+ +G + E L ++ D D +PPIR A +
Sbjct: 243 VM-SIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHG 301
Query: 351 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG- 409
+ L AL G + ++ +DH P K + +F K G++ ++ + + W + G
Sbjct: 302 KALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQ 361
Query: 410 VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 468
++ S AK+ KGAI G+ AD+++ P + F + H +
Sbjct: 362 ISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAK--THHSRIDTN 419
Query: 469 AYLGRRLSGKVLATISRGNLVYKEG 493
Y GRR GKV TIS+G +V++ G
Sbjct: 420 VYEGRRGKGKVEVTISQGRVVWENG 444
|
Length = 486 |
| >gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360
SL+LL + K+ G+ + E H+L + +T K PP+R ++ L EAL +G
Sbjct: 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEG 267
Query: 361 HIDMLSSDHSPTVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 417
ID L+S HS K L DE F GI S+ + ++Y K G +T +L+
Sbjct: 268 KIDFLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSR 322
Query: 418 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477
+ S PA+ G + G I +G ADLV+++P +D+ + S Y G L G
Sbjct: 323 FTSYNPAQFLGL-NSGEIEVGKEADLVLFDPNESTIIDD---------NFSLYSGDELYG 372
Query: 478 KVLATISRGNLVYK 491
K+ A I +G L +
Sbjct: 373 KIEAVIIKGKLYLE 386
|
Length = 386 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-23
Identities = 109/423 (25%), Positives = 187/423 (44%), Gaps = 33/423 (7%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
V I++G I +I E Q++D ++ PGL+D+++H +PG E E S
Sbjct: 24 VLIEDGKIQAI--EPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLASLA 81
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SA 181
AAAAGG T + +P ++ P + TL A++ V + FWG L +
Sbjct: 82 AAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTE 140
Query: 182 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 241
L L AGV+G + P+ N + ++ L L +P+ + + V
Sbjct: 141 LAELAAAGVVGFT--------DGQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGV 192
Query: 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 301
E + L P S E A+ LL + T +H++ +S A S
Sbjct: 193 MREGLL----ALRLGLPGDPASAETTALAALLELVAAIGTP-------VHLMRISTARS- 240
Query: 302 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361
++L+ +AK G IT T +L E + D + PP+ + ++++ L E + G
Sbjct: 241 VELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGV 300
Query: 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYGVTLEQLASWWS 420
ID ++ DH+P E K + F +A G L+ LP+ W + ++ QL S
Sbjct: 301 IDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALS 357
Query: 421 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKV 479
PA+ GQ ++A G A+L++++P+ + + + S + +LG+ L G+V
Sbjct: 358 TNPARCLGQEPP-SLAPGQPAELILFDPQKTWTVSAQ---TLHSLSRNTPWLGQTLKGRV 413
Query: 480 LAT 482
L T
Sbjct: 414 LQT 416
|
Length = 418 |
| >gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 4e-22
Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 64/283 (22%)
Query: 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 154
+ +PGLIDVH HL +PG T E F SGTKAA AGG T + MP N++PS + +LKL
Sbjct: 3 IRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQ 61
Query: 155 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 214
A+ + D F G NA L + +GLK ++ N+ T ++ I
Sbjct: 62 SLAQAKARCDYAFSIGATSTNAATVGE----LASEAVGLKFYL-----NE---TFSTLIL 109
Query: 215 EGLSVLARY------KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268
+ ++ A + +P++ HA+ S L AA
Sbjct: 110 DKITAWASHFNAWPSTKPIVTHAK---------------------SQTL---------AA 139
Query: 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328
+ LL + R +HI H+S ++L+ AK G +T E PH+L S
Sbjct: 140 V--LLLASLHNR--------SIHICHVSSKEE-INLIRLAKARGLKVTCEVSPHHLFLSQ 188
Query: 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371
+++P G +++ P + ++E LWE L +ID ++DH+P
Sbjct: 189 DDLPRG--QYEVRPFLPTREDQEALWENL--DYIDCFATDHAP 227
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. Length = 344 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 9/206 (4%)
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
H +S A S + L AK G +T ++L+ + +I + T FK +PP+R
Sbjct: 231 RGRYHAAQISCAES-AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRT 289
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
++ + EA+ G ID++ S H P + K L F +A G L+ +L
Sbjct: 290 EDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLP---FSEAAAGAIGLETLLAAALRLYH 346
Query: 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 466
V L +L S RPA++ G + G + G AD++V + + + +D P +K S
Sbjct: 347 NGEVPLLRLIEALSTRPAEIFG-LPAGTLKPGAPADIIVIDLDEPWVVD---PEDLKSRS 402
Query: 467 I-SAYLGRRLSGKVLATISRGNLVYK 491
+ + R G+V+ TI G VY+
Sbjct: 403 KNTPFEEARFQGRVVRTIVAGKTVYE 428
|
Length = 429 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-12
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 124
I++G I +I ++ +V+D ++PGLID+H HL E +G A
Sbjct: 3 IEDGKIAAIGGDDLPDA---EAEVIDAEGKYVLPGLIDMHVHLG--EEPGRETLETGAAA 57
Query: 125 AAAGGITTL 133
A AGG+TT+
Sbjct: 58 ALAGGVTTV 66
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 9e-11
Identities = 69/362 (19%), Positives = 114/362 (31%), Gaps = 64/362 (17%)
Query: 95 VIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 151
+++PGLID H HL+ P G +E +G KA G TT++D P +++ S + +
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60
Query: 152 LKVDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 206
+ AA K + + G A E L +
Sbjct: 61 EGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGA--DLIKVIE--DGGKTA 116
Query: 207 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266
L LA + P + H ++ E + ++ S E
Sbjct: 117 KAIDGV----LPALAPHDPPTVSHEGLKNEVE-LAEETEEAEKLGLLVHIH-AAEASGEV 170
Query: 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326
AI + + H +HL D + L++ +G +
Sbjct: 171 NAILGGVDLLA-------------HCLHLDDEAI---ELLKEAGSGIAHCP--------L 206
Query: 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 386
S E I RF + I L S + +L D+G +
Sbjct: 207 SNESILHRGGRF--------------SLMSGDAQGIGELGSGGARLA---RLADKGGVVG 249
Query: 387 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 445
+ L Y G++ + + PAK G G+I +G ADLVV
Sbjct: 250 LGTDGAGLNGKD----FYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVV 305
Query: 446 WE 447
+
Sbjct: 306 VD 307
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 4e-10
Identities = 56/309 (18%), Positives = 87/309 (28%), Gaps = 89/309 (28%)
Query: 100 LIDVHAHLDDPGRTEWEGFP------------------SGTKAAAAGGITTLIDMPLNSD 141
ID H HLD +A AGG+TT++DM ++
Sbjct: 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STP 59
Query: 142 PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS--------ALEALLNAGVLGL 193
P T + ++ +AA + V G+ A L L G +GL
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 194 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253
K + + ++ L + P+++HA
Sbjct: 120 KLAGPYT----ATGLSDESLRRVLEEARKLGLPVVIHAG--------------------- 154
Query: 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNG 312
A+ +L+ G + I H+S L+LL EA
Sbjct: 155 -------ELPDPTRALEDLV--------ALLRLGGRVVIGHVSHLDPELLELLKEAG--- 196
Query: 313 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372
+++E CP RD E L L G L +D P
Sbjct: 197 --VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238
Query: 373 VPELKLLDE 381
LL
Sbjct: 239 PLGTDLLAL 247
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 47 LTSKRIVTPKGVIS--GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
L + RI+ P + G V I++G I++ + ++VD + PGL+D
Sbjct: 7 LANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDAR 66
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 142
+ +PG E S ++AAAAGG+T++I MP ++DP
Sbjct: 67 VFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDP 103
|
Length = 429 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
+ + RI+TP G+ GAV +++G I++I E++ + +++D ++PG ID+H
Sbjct: 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDE---LEEADEIIDLKGQYLVPGFIDIH 57
Query: 105 AH 106
H
Sbjct: 58 IH 59
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase | Back alignment and domain information |
|---|
Score = 56.0 bits (134), Expect = 1e-08
Identities = 67/363 (18%), Positives = 104/363 (28%), Gaps = 67/363 (18%)
Query: 90 DYGEAVIMPGLIDVHAHLDDPGRTE-----WEGFPSGTKAAAAGGITTLIDMPLNSDPST 144
D +++PGL+D+H H ++E +G A A G+T+ +
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 145 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYN-ASALEALLNAGVLGLKSFMCPSGIN 203
R+ V V G + N AL+ L+ + S ++
Sbjct: 61 T--------------RLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLD 106
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 263
GL L R H + L
Sbjct: 107 G----------PGLEALLRE-----AKKAGLILLVGHAPADLGDGAVEKGLDALFLLALG 151
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323
E A L P G LH++ + L+ +
Sbjct: 152 HEVAEDLHLA------EILDPGAGLGLHVIAAAADLLLEGLVA-------AHAGGLAVVP 198
Query: 324 LAFSAEEIPDGDTRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 382
L + FK PP+R ++E L E L G L SDH+P P
Sbjct: 199 LELLLRDAAAAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSP-------- 250
Query: 383 NFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHA 441
+ +L G+T E+ + PA+L G G + +G A
Sbjct: 251 ---------AGPGDLLEAALFLAALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRA 301
Query: 442 DLV 444
DLV
Sbjct: 302 DLV 304
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
Y L + RI T GV+ G + E I V + P + +++D A+++PG ID+H
Sbjct: 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVPAELPAD---AEIIDLKGALLVPGFIDLH 58
Query: 105 AH 106
H
Sbjct: 59 IH 60
|
Length = 380 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 92/448 (20%), Positives = 147/448 (32%), Gaps = 148/448 (33%)
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119
+ V I++G I +I +V+D V+ PG IDVH H D G+ W+
Sbjct: 19 TADVGIRDGRIAAIGPILSTSAR----EVIDAAGLVVAPGFIDVHTHYD--GQVFWD--- 69
Query: 120 SGTKAAAAGGITTLIDM-------PLNSD-----PSTISTETLKLK------------VD 155
+ ++ G+TT++ P N D + + +D
Sbjct: 70 PDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLD 129
Query: 156 AAEKRIY-VDVGFWGGLVPENAYNASAL--------------------EALLNAGVLGLK 194
A E R V+V LV A + + EAL AG LG+
Sbjct: 130 ALEARPPAVNVAA---LVGHAALRRAVMGLDAREATEEELAKMRELLREAL-EAGALGI- 184
Query: 195 SFMCPSGINDFPMTNASHIKEGL----SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250
L V ARY H V+ E D++
Sbjct: 185 ------STGLAYAPRLYAGTAELVALARVAARYGGVYQTH----------VRYEGDSILE 228
Query: 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS--------SL 302
A+ ELL + ++T G +HI HL A + L
Sbjct: 229 -----------------ALDELLRLGRET-------GRPVHISHLKSAGAPNWGKIDRLL 264
Query: 303 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 362
L+ A+ G +T + P Y A S ++ +M +
Sbjct: 265 ALIEAARAEGLQVTADVYP-YGAGSEDD-----------------------VRRIMAHPV 300
Query: 363 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 422
M SD +++G + VL + RK ++LE+ +
Sbjct: 301 VMGGSD--------GGALGKPHPRSYGDFT---RVLGH-YVRERK-LLSLEEAVRKMTGL 347
Query: 423 PAKLAGQVSKGAIAIGNHADLVVWEPEA 450
PA++ G +G IA G AD+VV++P+
Sbjct: 348 PARVFGLADRGRIAPGYRADIVVFDPDT 375
|
Length = 415 |
| >gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 81/482 (16%), Positives = 136/482 (28%), Gaps = 124/482 (25%)
Query: 55 PKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD----- 109
+ G + I++G I++I + + +V+D +++PG ++ H HLD
Sbjct: 17 EGRIEDGDLVIEDGKIVAIGANAE---GPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRG 73
Query: 110 ----------PGRTEWEGFPSGTKA-------------AAAGGITTLIDMPLNSDPS--T 144
R W G TT S
Sbjct: 74 LADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADA 133
Query: 145 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG-LKSFMCPSGIN 203
L++ + A + DV F + E L A LG + P
Sbjct: 134 AFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLGRDVVGLAPHFPY 193
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHA-----EMEKGSERHVKLEDDTLDTRSYSTYLK 258
+ E + +Y P+ +H E+E+ E + + LD
Sbjct: 194 TVSPELLESLDE---LARKYGLPVHIHLAETLDEVERVLEPYGARPVERLD--------- 241
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
+ +A H VHLS+ +L + A++ +V
Sbjct: 242 ------LLGLLGSHTLLA--------------HCVHLSEE----ELELLAESG---ASVV 274
Query: 319 TCP---HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE 375
CP L G L G L +D + +
Sbjct: 275 HCPRSNLKLG-------SGIAPV---------------RRLLERGVNVALGTDGAASNNV 312
Query: 376 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGA 434
L +L E ++ + L L G TL AK G G+
Sbjct: 313 LDMLRE---MRTADLLQKLAGGLLAAQLPGEALDMATL---------GGAKALGLDDIGS 360
Query: 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ +G ADLVV + H ++ S + V + G LV ++G
Sbjct: 361 LEVGKKADLVV------LDASAPHLAPLRPVSRLVFAAGGK--DVDRVLVDGRLVMEDGR 412
Query: 495 HA 496
Sbjct: 413 LL 414
|
Length = 421 |
| >gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 8e-07
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
+ L++ R+V P V+ G++ I++G I +I P S +D ++PGL+D
Sbjct: 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAID-----PGASALPGAIDAEGDYLLPGLVD 56
Query: 103 VHA-HLDD-----PGRTEWEGFPSGT------KAAAAGGITT 132
+H +L+ PG +W P+ AA GITT
Sbjct: 57 LHTDNLEKHLAPRPG-VDW---PADAALAAHDAQLAAAGITT 94
|
Length = 383 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 56 KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRT 113
+ GAV I++G I+++ EE +V+D + PGLID H HL
Sbjct: 24 GIIEDGAVLIEDGKIVAVGPEE--IDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGG 81
Query: 114 EWE----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 160
E+E G AA GGI L +T LK KR
Sbjct: 82 EFELREAGASYTEILAAGGGILPLD-----RGFTTARDGGLKATALPRLKR 127
|
Length = 406 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 51 RIVTPK-------GVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
++ T G+I GA+ I++G I+ + E D P + +V+D G ++ PGLID
Sbjct: 11 QLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLID 69
Query: 103 VHAHL 107
H HL
Sbjct: 70 CHTHL 74
|
Length = 406 |
| >gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 39/150 (26%), Positives = 55/150 (36%), Gaps = 26/150 (17%)
Query: 57 GVISGAVEIKEGNIISIVSEEDWPRN----------SKTGQVVDYGEAVIMPGLIDVHAH 106
G++ G + I++G I+ I + P V + PG IDVH H
Sbjct: 83 GIVKGDIGIRDGRIVGIGKAGN-PDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVH 141
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAAEKRIYVD 164
D + A A GITT++ L S + AAE V+
Sbjct: 142 FDSAQLVD---------HALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVN 191
Query: 165 VGFWGGLVPENAYNASALEALLNAGVLGLK 194
GF G N+ +AL + AG GLK
Sbjct: 192 FGFLG---RGNSSKPAALIEQVEAGACGLK 218
|
Length = 569 |
| >gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 43 NQYWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101
Y L IVT VI +GAV I +G I ++ +E + K +D V+ PG I
Sbjct: 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKE---IDLPGNVLTPGFI 59
Query: 102 DVHAH 106
D+H H
Sbjct: 60 DIHIH 64
|
[Central intermediary metabolism, Amino sugars]. Length = 380 |
| >gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 57 GVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAH 106
V G + + +GNII+ + E R +K G +V+D I+PG ID H H
Sbjct: 23 VVEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIH 73
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. Length = 429 |
| >gnl|CDD|225985 COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
L++ RIV V++G+V I++G I I S +D ++PGLI++H
Sbjct: 2 ILSNARIVLEDRVVNGSVLIRDGLIADID-----EGISPLAAGIDGEGDYLLPGLIELHT 56
Query: 106 -HLDD-----PGRTEWE---GFPSGTKAAAAGGITTLID 135
+L+ PG W + AA GITT++D
Sbjct: 57 DNLERFMTPRPG-VRWPPIAAILAHDAQLAASGITTVLD 94
|
Length = 377 |
| >gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 30/114 (26%)
Query: 53 VTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--- 107
V P GV+ AV I++G I++I+ + + V+ + V++PGLI+ H H
Sbjct: 19 VEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMS 78
Query: 108 ------DD------------PGRTEW--EGF-PSGTKAAAA----GGITTLIDM 136
DD P W E F GT A A GG T DM
Sbjct: 79 LLRGLADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDM 132
|
Length = 443 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPG--RTEWE--- 116
+ I++G I ++ P + +D G + PGL+D H HL G E+
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARL 60
Query: 117 -GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 151
G AA GGI + + + + L+
Sbjct: 61 AGASYEEILAAGGGILSTVRATRAASEDELFASALR 96
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 62 AVEIKEGNIISIVSEEDW-PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120
AV IK+G I+++ S+ + +V+D ++PG +D H HL G + E
Sbjct: 26 AVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELNLD 85
Query: 121 GTKAAAA 127
G ++
Sbjct: 86 GVRSLDD 92
|
Length = 535 |
| >gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 29/106 (27%)
Query: 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 414
E G +D+LSSD+ P +SL L + G +L +
Sbjct: 241 ELAAHGLLDILSSDYVP--------------------ASL---LHAAFRLADLGGWSLPE 277
Query: 415 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPV 460
+ S PA+ G +G+IA G ADL++ + + PV
Sbjct: 278 AVALVSANPARAVGLTDRGSIAPGKRADLIL------VDDMDGVPV 317
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. Length = 325 |
| >gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 51 RIVTP--KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
RIV + G + I G I+ ++ E +V+D I+PG ID H H++
Sbjct: 32 RIVDVVTGEIYKGDIAIAGGRIVGVIGEYRAEAT----EVIDAAGRYIVPGFIDAHLHIE 87
Query: 109 DPGRTEWEGFPSG-TKAAAAGGITTLIDMPLNSDPSTIS----TETLKLKVDAAEK---R 160
T PS +A G TT++ SDP I+ + ++ +D A++ +
Sbjct: 88 SSMLT-----PSEFARAVLPHGTTTVV-----SDPHEIANVLGEDGIRFMLDEAKETPLK 137
Query: 161 IYV 163
+YV
Sbjct: 138 VYV 140
|
Length = 584 |
| >gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 28/103 (27%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DD-- 109
G V +++G I+++ +V+D V+MPGL++ H HL DD
Sbjct: 20 GDVLVEDGRIVAVGPALP-LPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLP 78
Query: 110 ------------PGRTEWEGFPSGTKAAAA----GGITTLIDM 136
E G A A G TT DM
Sbjct: 79 LMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADM 121
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411 |
| >gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 87 QVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAAG---------GITTLID 135
QV+D G +MPGLID H HL D P + A G TT+ D
Sbjct: 2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRD 61
Query: 136 M 136
Sbjct: 62 A 62
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342 |
| >gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
LT R++ P I I N I + +D+P ++T Q++D ++ PGLID+H H
Sbjct: 8 LTGGRLIDPARGIDEITNIAIINGK-IAAADDYPAPAET-QIIDADGCIVSPGLIDLHVH 65
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLID 135
+ G TE P A G+TT++D
Sbjct: 66 V-YYGGTEGGVRPD--MYGAPNGVTTVVD 91
|
Length = 386 |
| >gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 51 RIVTPKGVISGAVE--IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
R++ P I G ++ I++G I ++ + S+ +V+D + PG ID+H H+
Sbjct: 7 RVIDPANGIDGVIDIAIEDGKIAAVAGD---IDGSQAKKVIDLSGLYVSPGWIDLHVHV- 62
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLID 135
PG T + P G+TT++D
Sbjct: 63 YPGSTPYGDEPDE--VGVRSGVTTVVD 87
|
Length = 380 |
| >gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 36/182 (19%)
Query: 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG----T 122
E I+ V Q+VD G + PG ID+H H+ ++G
Sbjct: 5 ENGKIAAVGAALAA--PAATQIVDAGGCYVSPGWIDLHVHV-------YQGGTRYGDRPD 55
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKV-DAAEKRIY--VDVGFWGGLVPENAYN- 178
G+TT++D + + + V + + R+Y +++ G + + +
Sbjct: 56 MIGVKSGVTTVVDA---GSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDP 112
Query: 179 ----ASALEALLNAG---VLGLKSFMCPSGINDF---PMTNASHIKEGLSVLARYKRPLL 228
A+ A ++GLK+ S + ++ P+ A I + + PL+
Sbjct: 113 DNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADL------PLM 166
Query: 229 VH 230
VH
Sbjct: 167 VH 168
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 338 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 23/94 (24%)
Query: 398 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELDN 456
L + + KYG++ E+ + PAK+ G + G++ G ADLVVW N
Sbjct: 288 LNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVW---------N 338
Query: 457 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490
P+ K G LVY
Sbjct: 339 GDPLEPT-------------SKPEQVYIDGRLVY 359
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 62 AVEIKEGNIISIVSEED-WPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE----WE 116
AV +++G I+++ S+ + +V+D ++PG ID H+HL G +
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLS 60
Query: 117 GFPSGTKAAAA 127
G S +A A
Sbjct: 61 GVTSKEEALAR 71
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
L++ R+V V+ G+V I++G I I + D +++PGLID+H
Sbjct: 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPVALAEAI-----DGEGDLLLPGLIDLHT 55
Query: 106 -HLDD-----PGRTEWE---GFPSGTKAAAAGGITTLID 135
+L+ PG +W K AA GITT+ D
Sbjct: 56 DNLERHMSPRPG-VDWPIDAAIVEHDKQLAAAGITTVFD 93
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs [Energy metabolism, Other]. Length = 376 |
| >gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 60/270 (22%), Positives = 86/270 (31%), Gaps = 78/270 (28%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM---------- 136
+ +D V+ PG ID+HAH + A G+TT +++
Sbjct: 60 RTIDATGLVVAPGFIDLHAHGQSVA---------AYRMQAFDGVTTALELEAGVLPVARW 110
Query: 137 ---------PLNSDPST------ISTET-LKLKVDAAEKRIYVDVGFWGGLVP---ENAY 177
PLN S I+ T + + A+ + W E A
Sbjct: 111 YAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQERAATPAELAE 170
Query: 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237
LE L+ G LG+ G P T E + AR P H
Sbjct: 171 ILELLEQGLDEGALGIGI-----GAGYAPGTGHKEYLELARLAARAGVPTYTHVR----- 220
Query: 238 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH--- 294
YL P A +EL+ A +T GAH+HI H
Sbjct: 221 ------------------YLSNVDPRSSVDAYQELIAAAAET-------GAHMHICHVNS 255
Query: 295 --LSDASSSLDLLMEAKTNGDSITVETCPH 322
L D L L+ +A+ G +T E P+
Sbjct: 256 TSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285
|
Length = 509 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| PLN02795 | 505 | allantoinase | 100.0 | |
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| PRK08044 | 449 | allantoinase; Provisional | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| PRK09059 | 429 | dihydroorotase; Validated | 100.0 | |
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| PRK09060 | 444 | dihydroorotase; Validated | 100.0 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 100.0 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 100.0 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 100.0 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 100.0 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 100.0 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 100.0 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 100.0 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 100.0 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 100.0 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 100.0 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 100.0 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 100.0 | |
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 100.0 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 100.0 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 100.0 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 100.0 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 100.0 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 100.0 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 100.0 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 100.0 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 100.0 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 100.0 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 100.0 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 100.0 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 100.0 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 100.0 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 100.0 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 100.0 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 100.0 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 100.0 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 100.0 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 99.98 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 99.98 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 99.98 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 99.98 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 99.98 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 99.98 | |
| PLN02303 | 837 | urease | 99.97 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 99.97 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 99.97 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 99.97 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 99.97 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 99.97 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 99.97 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 99.97 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 99.97 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 99.97 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 99.97 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 99.97 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 99.96 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 99.96 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 99.96 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 99.96 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 99.96 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 99.96 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 99.96 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.96 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 99.96 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 99.96 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 99.96 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.96 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.96 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.96 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 99.95 | |
| PRK06846 | 410 | putative deaminase; Validated | 99.95 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 99.95 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.95 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.95 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.95 | |
| PLN02599 | 364 | dihydroorotase | 99.95 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.94 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.94 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.94 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.93 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.92 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.86 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.81 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.81 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 99.78 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.74 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 99.65 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 99.6 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.53 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.49 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.49 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 99.41 | |
| KOG2902 | 344 | consensus Dihydroorotase [Nucleotide transport and | 99.04 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 98.86 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 98.85 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.66 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 98.58 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.53 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 98.44 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 98.3 | |
| PRK10425 | 258 | DNase TatD; Provisional | 98.26 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 98.23 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 98.21 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 98.16 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 98.12 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 98.1 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 97.87 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 97.58 | |
| PF07908 | 48 | D-aminoacyl_C: D-aminoacylase, C-terminal region; | 97.57 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 97.55 | |
| PF00449 | 121 | Urease_alpha: Urease alpha-subunit, N-terminal dom | 97.21 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 97.18 | |
| COG1831 | 285 | Predicted metal-dependent hydrolase (urease superf | 96.92 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 96.5 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 96.44 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 96.27 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 96.22 | |
| PRK08392 | 215 | hypothetical protein; Provisional | 95.24 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 94.91 | |
| PRK00912 | 237 | ribonuclease P protein component 3; Provisional | 94.67 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 94.14 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 93.38 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 92.77 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 92.75 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 92.51 | |
| COG4464 | 254 | CapC Capsular polysaccharide biosynthesis protein | 87.32 | |
| PRK07945 | 335 | hypothetical protein; Provisional | 86.07 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 85.55 | |
| PRK06361 | 212 | hypothetical protein; Provisional | 84.93 |
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=495.35 Aligned_cols=504 Identities=70% Similarity=1.136 Sum_probs=417.8
Q ss_pred CCcccchhhhhhHHHHHHHHHHh-hheecCccccccccCCCCcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCC
Q 010547 1 MENLNLQWRLLPTLTLLAASLFL-LVFKDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDW 79 (507)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~ 79 (507)
||.--||.+-++|...+...++. +|....-.+........++.+++|+|++|+++++...++|+|+||+|++|++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~ 80 (505)
T PLN02795 1 MESALLQLRILPLLALLATLVFFFLFAPALPLQGRDRCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEA 80 (505)
T ss_pred CchHhhhhhhHHHHHHHHHHHHHHHhccccccccccccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCcccc
Confidence 67777899999998888755554 44433333344445556678999999999998887789999999999999975432
Q ss_pred CCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Q 010547 80 PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 159 (507)
Q Consensus 80 ~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~ 159 (507)
+...++.++||++|++|+|||||+|+|+..++...++++....+.++.+||||+++++.++.|.....+.+....+....
T Consensus 81 ~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~ 160 (505)
T PLN02795 81 PKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKG 160 (505)
T ss_pred ccccCCCEEEECCCCEEecCEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhcc
Confidence 21112568999999999999999999998876667888999999999999999999984456777778888887777777
Q ss_pred CceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchh
Q 010547 160 RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (507)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 239 (507)
...+++.++.+.........+++.++.+.|+.+++.|+.+.+.+..+..+++.+.++++.+++++.++.+|+|+...+..
T Consensus 161 ~~~vd~~~~~~~~~~~~~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~ 240 (505)
T PLN02795 161 KLYVDVGFWGGLVPENAHNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVES 240 (505)
T ss_pred CceeeeeceecccCcchhHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhh
Confidence 77788776665543333445677777788999999987664444456778899999999999999999999999876431
Q ss_pred hhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEec
Q 010547 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (507)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~ 319 (507)
.. . ...+......++..+|...|..++.+.+.++++++..+..++.++|+.|+++...+++.++.+++.|+.+++++
T Consensus 241 ~~--~-~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev 317 (505)
T PLN02795 241 DS--R-LDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVET 317 (505)
T ss_pred hh--h-hhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEe
Confidence 11 0 02223344455778999999999999999999875555556889999999986589999999999999999999
Q ss_pred ccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHH
Q 010547 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 399 (507)
||||+.++.+.+...++.++++||+|...+++.+++++.+|.+++++|||+|+...+|.....+|+.++.|+.+++..++
T Consensus 318 ~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~ 397 (505)
T PLN02795 318 CPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLP 397 (505)
T ss_pred ChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHH
Confidence 99999999999877889999999999999999999999999999999999999988887666679999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEE
Q 010547 400 VTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479 (507)
Q Consensus 400 ~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 479 (507)
.++....+.+++++++++++|.|||++||++++|+|++|++|||+|+|++..|.++....+.++..+++||.|..+.|.|
T Consensus 398 ~~~~~~~~~~l~l~~~v~~~s~~pA~~~gl~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v 477 (505)
T PLN02795 398 ATWTAGRAYGLTLEQLARWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKV 477 (505)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEE
Confidence 99988888899999999999999999999966899999999999999999988887552234444238999999999999
Q ss_pred EEEEECCEEEEecCcccCCCCCcccccC
Q 010547 480 LATISRGNLVYKEGNHAPAACGSPILAT 507 (507)
Q Consensus 480 ~~v~v~G~~v~~~g~~~~~~~~~~~~~~ 507 (507)
..|+++|++||++|+++....|+++.++
T Consensus 478 ~~tiv~G~~v~~~g~~~~~~~G~~~~~~ 505 (505)
T PLN02795 478 IATFVRGNLVFLEGKHAKQACGSPILAK 505 (505)
T ss_pred EEEEECCEEEEECCeEcCCCCCeEecCC
Confidence 9999999999999999877789999875
|
|
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-58 Score=450.77 Aligned_cols=426 Identities=36% Similarity=0.539 Sum_probs=384.4
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~ 123 (507)
+++|+|+++++++....++|.|+||+|++|++..... .+.++||++|++|+||+||.|+|+..++...++++.+..+
T Consensus 2 ~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~---~~~~iiD~~g~~v~PG~ID~HVH~repg~~~ke~~~tgs~ 78 (430)
T COG0044 2 DLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPT---SGAEIIDAKGLLVLPGLVDLHVHFREPGFEHKETFETGSR 78 (430)
T ss_pred cEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCC---CCCcEEECCCCEEccCeeEEEEecCCCCcchhhhHHHHHH
Confidence 6799999999997678999999999999999875544 2789999999999999999999999999999999999999
Q ss_pred HHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCC
Q 010547 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203 (507)
Q Consensus 124 ~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 203 (507)
.++++||||++++| ++.|...+.+.+......+..+..+++.+++++........++..... ..+++.|+..++
T Consensus 79 AAa~GG~Ttv~dmP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~---~~g~~~F~~~~~-- 152 (430)
T COG0044 79 AAAAGGVTTVVDMP-NTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV---EAGFKGFMDDST-- 152 (430)
T ss_pred HHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh---ccceEEEecCCc--
Confidence 99999999999999 899999999999999999999999999999988887665333333322 356666664432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCC
Q 010547 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (507)
Q Consensus 204 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 283 (507)
+....+.+++..+.++..+..+.+|+|+...+..+.+ .++..+...++..+|...|..++.+.+.++..+
T Consensus 153 --~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~----~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~---- 222 (430)
T COG0044 153 --GALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVM----NEGLRAPELGLAGRPPIAEASAIARDLELARAT---- 222 (430)
T ss_pred --CcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHH----hcCccchhhccCCCChHHHHHHHHHHHHHHHHh----
Confidence 5688999999999999999999999999876654444 555666777888999999999999999999976
Q ss_pred CCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCee
Q 010547 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (507)
Q Consensus 284 ~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 363 (507)
|.++|+.|+++. +++++++.++..|++++++++|||+.++.+++..+++.++.+||+|...++..+++++.+|.++
T Consensus 223 ---g~~vhi~HiSt~-~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID 298 (430)
T COG0044 223 ---GARVHICHISTK-ESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVID 298 (430)
T ss_pred ---CCcEEEEEcCCH-HHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCc
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcE
Q 010547 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 443 (507)
Q Consensus 364 ~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADl 443 (507)
.++|||+|+...+|.. +|+.++.|+.|++..++.++..+.+..+|+.+++++.|.|||++||++..|.|++|+.|||
T Consensus 299 ~iasDHaPht~eeK~~---~f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v~~~S~nPA~ifgl~~~g~i~~G~~ADl 375 (430)
T COG0044 299 VIASDHAPHTLEEKRL---PFEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPPKGAIEEGADADL 375 (430)
T ss_pred EEEcCCCCCCHHHhcc---chhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHHHHHhhCHHHHhCCCCCCcccCCCccCE
Confidence 9999999999998753 3999999999999999999997777889999999999999999999955788999999999
Q ss_pred EEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC
Q 010547 444 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 444 vvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~ 497 (507)
+|+|++..|.+... .+.++.. ++||.|....|.|..|+++|+++|.+++...
T Consensus 376 ~lvD~~~~~~i~~~-~~~sk~~-~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~~ 427 (430)
T COG0044 376 VLVDPDEEWTIRAE-ELYSKAK-NSPFEGFELKGRVVATILRGKVVYEDGEVIA 427 (430)
T ss_pred EEEcCCCCeEEchh-hhccccC-CCCcCCCEEeeeEEEEEECCEEEEECCcEec
Confidence 99999999999888 8999999 9999999999999999999999999997653
|
|
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=461.88 Aligned_cols=445 Identities=39% Similarity=0.677 Sum_probs=381.9
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
+.+++|+|++|+++++...++|+|+||+|++|++....+ +.++||++|++|+|||||+|+|+..++...++++.+.
T Consensus 2 ~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~~~----~~~~iD~~g~~vlPG~ID~H~H~~~~~~~~~~~~~~~ 77 (451)
T PRK06189 2 MYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISSP----AREIIDADGLYVFPGMIDVHVHFNEPGRTHWEGFATG 77 (451)
T ss_pred CccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCCCC----CCeEEECCCCEEecCEEEeeeccCCCCCCCcccHHHH
Confidence 467899999999988888899999999999998764322 5689999999999999999999988766678889999
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 201 (507)
.+.++++||||+++++.++.|.....+.+....+.++....+++.++.+.... ..+++.++.+.|+.+++.|+.+.+
T Consensus 78 ~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~l~~l~~~Gv~~~k~f~~~~~ 154 (451)
T PRK06189 78 SAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPG---NLEHLRELAEAGVIGFKAFMSNSG 154 (451)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEeccccc---CHHHHHHHHHcCCcEEEEEccccC
Confidence 99999999999999985566777778888888887887888898887544322 366788888899999999976544
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
..+.+..+...+.++++.+++.+..+..|+|+...+....... ...+..+...++..+|...|..++.+.+.++++.
T Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~-~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~-- 231 (451)
T PRK06189 155 TDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQA-RQQGKTDVRDYLESRPVVAELEAVQRALLYAQET-- 231 (451)
T ss_pred CCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHH-HhcCCCChhHccccCCHHHHHHHHHHHHHHHHHh--
Confidence 3345567788999999999999999999999887644332111 1233334455778899999999999999999976
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~ 361 (507)
|.++|+.|+++. .+++.++.++..|+.+++++|||++.++.+.+...+..++.+||+|...+++.+++++.+|.
T Consensus 232 -----g~~~hi~HiSt~-~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~ 305 (451)
T PRK06189 232 -----GCPLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGE 305 (451)
T ss_pred -----CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCC
Confidence 889999999998 99999999999999999999999999999988777888999999999999999999999999
Q ss_pred eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 362 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
+++++||++|+....|. ..+|+..+.|+.+++..++.++... .+.+++++++++++|.|||++||++++|+|++|++
T Consensus 306 i~~i~sDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl~~~G~l~~G~~ 383 (451)
T PRK06189 306 IDMISSDHSPCPPELKE--GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLPQKGRLEVGAD 383 (451)
T ss_pred ceEEECCCCCCCHHHcC--cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCCCCCCcccCCCc
Confidence 99999999999776553 2468889999999999999988765 56679999999999999999999966899999999
Q ss_pred CcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCccccc
Q 010547 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 506 (507)
Q Consensus 441 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~~ 506 (507)
|||+|+|++..+.++.. .+.++.. ++||.+....|.|..|+++|++||++|+++....|++++.
T Consensus 384 ADlvi~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~tiv~G~~v~~~g~~~~~~~G~~~~~ 447 (451)
T PRK06189 384 ADFVLVDLDETYTLTKE-DLFYRHK-QSPYEGRTFPGRVVATYLRGQCVYQDGEVFPPPRGQLLRP 447 (451)
T ss_pred CCEEEEcCCCCEEECHH-HhhhcCC-CCCcCCcEEEeEEEEEEECCEEEEECCEEccCCCCcEecC
Confidence 99999999988888766 6666777 9999999999999999999999999999998889999975
|
|
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=447.85 Aligned_cols=421 Identities=24% Similarity=0.373 Sum_probs=361.0
Q ss_pred eEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 44 ~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
+++|+|++|+++.+ ..+++|+|+||||++|++..... .+.++||++|++|+|||||+|+|+..++....+++.+.
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~---~~~~~iDa~g~~vlPG~iD~H~H~~~~g~~~~e~~~t~ 78 (425)
T PRK07627 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGF---NADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESE 78 (425)
T ss_pred eEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCC---CCCeEEECCCCEEeccEEeccccccCCCccccCcHHHH
Confidence 58999999998755 35789999999999998753211 26789999999999999999999987777778899999
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC-CcccHHHHHHHHHcCCcEEEEcccCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPS 200 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 200 (507)
.+.++.+||||+++++ ++.|.....+.+.............+++.++.+... .+...+++.++.+.|+.+|+.+
T Consensus 79 s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~~G~~~fk~~---- 153 (425)
T PRK07627 79 MAAAVAGGVTSLVCPP-DTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELTEAGCVGFSQA---- 153 (425)
T ss_pred HHHHHhCCeeEEEeCC-CCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHHhCCEEEEEcC----
Confidence 9999999999999999 777777777766666555555455665555544433 3455678888888899999863
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
..+..+...+.+.++.+++.+.++.+|+|+....+..+. ..+......++..+|...|..++.+.+.+++.+
T Consensus 154 ---~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~----~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~- 225 (425)
T PRK07627 154 ---NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVA----ASGAVASRLGLSGVPVAAETIALHTIFELMRVT- 225 (425)
T ss_pred ---CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCc----CCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHH-
Confidence 334567888999999999999999999998766443332 333345556678899999999999999999977
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G 360 (507)
+.++|+.|+++. .+++.++.++.+|+.+++++||||+.++.+.+...+..++++||+|...+++.+++++.+|
T Consensus 226 ------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G 298 (425)
T PRK07627 226 ------GARVHLARLSSA-AGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADG 298 (425)
T ss_pred ------CCcEEEEeCCCH-HHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcC
Confidence 889999999999 9999999999999999999999999999998877788999999999999999999999999
Q ss_pred CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 361 ~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
.+++++|||+|+....+. .+|+..+.|+.+++..++.++....+.+++++++++++|.|||++||+ +.|+|++|+.
T Consensus 299 ~id~i~SDHaP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~-~~G~l~~G~~ 374 (425)
T PRK07627 299 TIDAICSDHTPVDDDEKL---LPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGL-PAGRLAEGAP 374 (425)
T ss_pred CCcEEEcCCCCCCHHHcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCC-CCCcccCCCc
Confidence 999999999999766553 469999999999999999888887888999999999999999999999 5799999999
Q ss_pred CcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecC
Q 010547 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493 (507)
Q Consensus 441 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g 493 (507)
|||+++|++..|.++.. .+.++.. ++||.+....|+|..||++|++||+++
T Consensus 375 ADlvv~d~~~~~~v~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~~ 425 (425)
T PRK07627 375 ADLCVFDPDAHWRVEPR-ALKSQGK-NTPFLGYELPGRVRATLVAGQVAFERR 425 (425)
T ss_pred CCEEEECCCCcEEEChh-hccccCC-CCCCcCCEeeeEEEEEEECCEEEeecC
Confidence 99999999988999877 7788888 999999999999999999999999864
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=454.42 Aligned_cols=444 Identities=27% Similarity=0.401 Sum_probs=372.9
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC---CCCCCCCh
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTEWEGF 118 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~---~~~~~~~~ 118 (507)
.++++|+|++|+++++...++|+|+||+|++|++.. + .+.++||++|++|+|||||+|+|+..+ +....+++
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~---~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~ 77 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--G---PGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDF 77 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--C---CCCeEEECCCCEEecCEEEeEEcCCccccCCccccchH
Confidence 356899999999988777899999999999998653 2 256899999999999999999999754 24456788
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccH-HHHHHHHHcCCcEEEEcc
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFM 197 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 197 (507)
....+.++.+||||+++++ .+.|.....+.+............+++.++.+.....+... +++.++.+.|+.++|.|+
T Consensus 78 ~~~s~aa~~gGvTtv~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~~G~~~iKi~~ 156 (477)
T PRK13404 78 YTGTVSAAFGGTTTVIPFA-AQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALIAQGYTSFKVFM 156 (477)
T ss_pred HHHHHHHHcCCccEEEEcc-CCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHHHcCCCEEEEEe
Confidence 9999999999999999987 55566666777777766666777888887766654433333 578888889999999987
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHH
Q 010547 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 277 (507)
.+++ +..+++++.++++.++++|.++.+|+++...++...... ...+......++..+|...|..++.+.+.+++
T Consensus 157 ~~~~----~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~-~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~ 231 (477)
T PRK13404 157 TYDD----LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRL-LAAGLTAPKYHAISRPMLAEREATHRAIALAE 231 (477)
T ss_pred cCCC----CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH-HHCCCcchhhccccCCHHHHHHHHHHHHHHHH
Confidence 4321 356789999999999999999999999877654221111 13344455566778999999999999999999
Q ss_pred hhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC---CCCceeEcCCCCChhhHHHHH
Q 010547 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLW 354 (507)
Q Consensus 278 ~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~ 354 (507)
+. |.++|+.|+++. .+++.++.+++.|+.+++++||||+.++.+++.. .++.++++||+|...+++.++
T Consensus 232 ~~-------g~~~hi~Hvs~~-~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~ 303 (477)
T PRK13404 232 LV-------DVPILIVHVSGR-EAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIW 303 (477)
T ss_pred Hh-------CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHH
Confidence 76 899999999998 9999999999999999999999999999998866 688999999999999999999
Q ss_pred HHHhcCCeeEEeCCCCCCChhhhc----cc-cCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhC
Q 010547 355 EALMDGHIDMLSSDHSPTVPELKL----LD-EGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 355 ~~l~~G~~~~lgtD~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lg 428 (507)
+++.+|.+++++|||+|+...+|. .. ..+|+.++.|+.+++..++.++.... ..+++++++++++|.|||++||
T Consensus 304 ~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lg 383 (477)
T PRK13404 304 NGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYG 383 (477)
T ss_pred HHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999765431 00 13688899999999999999998755 5579999999999999999999
Q ss_pred C-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCccccc
Q 010547 429 Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPILA 506 (507)
Q Consensus 429 l-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 506 (507)
+ +++|+|++|+.|||+++|.+..+.++.. .+.+... ++||.+....|.|..||++|++||+||+++... .|+|++.
T Consensus 384 l~~~~G~i~~G~~ADlvivd~~~~~~v~~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~~ 461 (477)
T PRK13404 384 LYPRKGAIAIGADADIAIWDPDREVTITNA-DLHHAAD-YTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLAR 461 (477)
T ss_pred CCCCCceecCCCcCCEEEEcCCccEEEchH-HhcccCC-CCcccceEEeeeEEEEEECCEEEEECCEEecCCCceeEecC
Confidence 9 7789999999999999999999988876 6677888 999999999999999999999999999998533 6999874
|
|
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=452.37 Aligned_cols=442 Identities=45% Similarity=0.754 Sum_probs=379.0
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~ 123 (507)
+++|+|++|+++++..+++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..++...++++....+
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~ 76 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDILG----PAAKIIDAGGLVVFPGVVDTHVHINEPGRTEWEGFETGTR 76 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCCC----CCCeEEECCCCEEeccEeccccccCCCCccccchHHHHHH
Confidence 478999999999888889999999999999875322 2578999999999999999999998766667788999999
Q ss_pred HHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCC
Q 010547 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203 (507)
Q Consensus 124 ~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 203 (507)
.++++||||+++++.++.|.....+.+....+.+.....+++..+++.. +...+++.++.+.|+.+++.|+.+.+..
T Consensus 77 ~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~i~~~~~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 77 AAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLV---PYNLDDLRELDEAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccC---CCCHHHHHHHHHCCCcEEEEEecccCCC
Confidence 9999999999999744567777788888888877777778887765543 3446678888889999999998665444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCC
Q 010547 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (507)
Q Consensus 204 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 283 (507)
..+..+++.+.++++.+++++.++.+|+|+...+....... ..++..+...++..+|...+..++.+.++++++.
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~-~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~---- 228 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEA-PPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT---- 228 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHH-HhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHh----
Confidence 45577899999999999999999999999887655432111 1344455566677889999999999999999976
Q ss_pred CCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCee
Q 010547 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (507)
Q Consensus 284 ~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 363 (507)
+.++|+.|+++. ..++.++.++++|+.+++++|||++.++.+.+...+..++.+||+|...++..+++++++|.++
T Consensus 229 ---g~~vhi~Hiss~-~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~ 304 (443)
T TIGR03178 229 ---GCRVHVVHLSSA-EAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLID 304 (443)
T ss_pred ---CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCcc
Confidence 889999999998 8999999999999999999999999999988877788999999999999999999999999999
Q ss_pred EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCc
Q 010547 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 442 (507)
Q Consensus 364 ~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~AD 442 (507)
+++||++|+....|. .++|+.++.|+.+++..++.++... .+.+++++++++++|.|||+++|++++|+|++|+.||
T Consensus 305 ~i~SDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~~~G~l~~G~~Ad 382 (443)
T TIGR03178 305 CVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDAD 382 (443)
T ss_pred EEeCCCCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCC
Confidence 999999999876653 3578899999999999999888766 4668999999999999999999996679999999999
Q ss_pred EEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCcccc
Q 010547 443 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505 (507)
Q Consensus 443 lvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~ 505 (507)
|+++|.+..+.++.. .+.++.. ++||.+....|.|..||++|++||++|++++...|+|+.
T Consensus 383 ~vi~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~g~~~~ 443 (443)
T TIGR03178 383 FVFVDPDESYTLTPD-DLYYRHK-VSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAPKGQLLL 443 (443)
T ss_pred EEEEcCCCcEEEcHH-HhhhcCC-CCCcCCcEEeeEEEEEEECCEEEEECCeeccCCCCcccC
Confidence 999999888888766 5667777 999999999999999999999999999998777899873
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-56 Score=446.98 Aligned_cols=441 Identities=34% Similarity=0.619 Sum_probs=379.6
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHH
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~ 122 (507)
.+++|+|++|+++++...++|+|+||+|++|++... .+.++||+.|++++|||||+|+|+..+.....+++....
T Consensus 3 ~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~-----~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~~~~e~~~~~~ 77 (449)
T PRK08044 3 FDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG-----DAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGT 77 (449)
T ss_pred ceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC-----CCCeEEECCCCEEcCCeeccccccCCCCccccccHHHHH
Confidence 578999999999877777999999999999986532 156899999999999999999999887766778899999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCC
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 202 (507)
+.++++||||+.+++.++.|.....+.+....+.++....+++.+++++... ...++.++.+.|+.+||.|+.+.+.
T Consensus 78 ~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~~~gv~~fk~~~~~~~~ 154 (449)
T PRK08044 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELDEVGVVGFKCFVATCGD 154 (449)
T ss_pred HHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHHHcCceEEEEEecccCc
Confidence 9999999999999986667888889999888888888888999888766533 4677788888999999998754321
Q ss_pred ----CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHh
Q 010547 203 ----NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (507)
Q Consensus 203 ----~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 278 (507)
.+.+..++..+.+.++.+++.+.++.+|+|+...++..... ....+......++..+|...|..++.+.+.++++
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~-~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~ 233 (449)
T PRK08044 155 RGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEE-AKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKV 233 (449)
T ss_pred ccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHH-HHhcCCCChhhccccCCHHHHHHHHHHHHHHHHH
Confidence 12234567788899999999999999999998875432111 1133334555667788999999999999999998
Q ss_pred hccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHh
Q 010547 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (507)
Q Consensus 279 ~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 358 (507)
. |.++|+.|+++. .+.+.++.+++.|..+++++|||++.++.+.+...+..++.+||+|...+++.+++++.
T Consensus 234 ~-------g~~vhi~HiSt~-~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~ 305 (449)
T PRK08044 234 A-------GCRLHVCHISSP-EGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLF 305 (449)
T ss_pred h-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHh
Confidence 7 889999999998 89999999999999999999999999999998778899999999999999999999999
Q ss_pred cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCcccc
Q 010547 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAI 437 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl~~~G~I~~ 437 (507)
+|.+++++|||+|+....+. .+|+.++.|+.+++..++.++.... +.+++++++++++|.|||++||++++|+|++
T Consensus 306 ~G~id~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl~~~G~i~~ 382 (449)
T PRK08044 306 NGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAP 382 (449)
T ss_pred CCCceEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCCCCcCCC
Confidence 99999999999998766653 4689999999999999999887654 6679999999999999999999955799999
Q ss_pred CCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCc-ccCCCCCcccc
Q 010547 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPIL 505 (507)
Q Consensus 438 G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~-~~~~~~~~~~~ 505 (507)
|++|||+++|++..|.+... .+.++.. ++||.|..+.|.|..|+++|++||++++ +.....|+|++
T Consensus 383 G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~~G~~v~~~~~~~~~~~~G~~~~ 449 (449)
T PRK08044 383 GKDADFVFIQPNSSYVLKNE-DLEYRHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFIL 449 (449)
T ss_pred CCccCEEEECCCCcEEECHH-HccccCC-CCCCCCCEEeeeEEEEEECCEEEEECCccccCCCCcccCC
Confidence 99999999999999999888 7888888 9999999999999999999999999988 44666899875
|
|
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=450.37 Aligned_cols=445 Identities=51% Similarity=0.870 Sum_probs=379.7
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~ 123 (507)
+++|+|++|+++++..+++|+|+||||++|++....+ ++.++||++|++|+|||||+|+|+..+....++++.+..+
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~---~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~s~ 77 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANT---EAEEVIDAGGLVVMPGLIDTHVHINEPGRTEWEGFETGTK 77 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCC---CCCeEEECCCCEEeccEeeceeccCCCCccccccHHHHHH
Confidence 4799999999998788899999999999999764312 2678999999999999999999998766667888999999
Q ss_pred HHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCC
Q 010547 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203 (507)
Q Consensus 124 ~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 203 (507)
.++++||||+++++.++.|.....+.+....+.......+++..+++.... ..++++++.+.|+.+++.|+.+....
T Consensus 78 aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~ei~~l~~~G~~giKv~~~~~~~~ 154 (447)
T cd01315 78 AAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG---NLDQLRPLDEAGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC---CHHHHHHHHHcCCcEEEEEecccCCC
Confidence 999999999999974455777778888888887776677888776544332 46677888888999999987654434
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCC
Q 010547 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (507)
Q Consensus 204 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 283 (507)
+.+..+.+.+.++++.+++++.++.+|+++...+........ ..+......++..+|...+..++.+.+.++++.
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~---- 229 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAK-AKGKRDYRDYLASRPVFTEVEAIQRILLLAKET---- 229 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHh-hcCCCChHHhhccCCHHHHHHHHHHHHHHHHHh----
Confidence 445678899999999999999999999998876554444322 333334455677789999999999999999976
Q ss_pred CCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCee
Q 010547 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (507)
Q Consensus 284 ~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 363 (507)
|.++|+.|+++. ..++.++.++..|..+++++|||++.++.+.+...+..++.+||+|...++..+++++.+|.++
T Consensus 230 ---g~~ihi~h~s~~-~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~ 305 (447)
T cd01315 230 ---GCRLHIVHLSSA-EAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDID 305 (447)
T ss_pred ---CCCEEEEeCCCH-HHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCcee
Confidence 899999999998 9999999999999999999999999999999888889999999999999999999999999999
Q ss_pred EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCC
Q 010547 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 441 (507)
Q Consensus 364 ~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~A 441 (507)
+++||+.|.....+.....+|+.++.++.+++..++.++.... +.+++++++++++|.|||+++|+ +++|+|++|++|
T Consensus 306 ~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~A 385 (447)
T cd01315 306 MVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDA 385 (447)
T ss_pred EEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCC
Confidence 9999999998776653345788899999999999998887654 56799999999999999999999 578999999999
Q ss_pred cEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCcccc
Q 010547 442 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505 (507)
Q Consensus 442 Dlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~ 505 (507)
||+++|.+..+.+... .+.+... ++||.+....|.|..||++|++||++|+++....|+++|
T Consensus 386 d~~v~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~ti~~G~~v~~~~~~~~~~~G~~~~ 447 (447)
T cd01315 386 DFVVWDPEEEFTVDAE-DLYYKNK-ISPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLLL 447 (447)
T ss_pred CEEEEcCCCCEEEcHH-HccccCC-CCCccCeEEeeeEEEEEECCEEEEECCeEccCCCceEeC
Confidence 9999999988877665 5666778 999999999999999999999999999998766899986
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=441.23 Aligned_cols=424 Identities=23% Similarity=0.329 Sum_probs=365.4
Q ss_pred cceEEEEecEEECCCCc--eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChh
Q 010547 42 YNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~--~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~ 119 (507)
+.+++|+|++|+++++. .+++|+|+||+|++|++.......+.+.++||++|++|+|||||+|+|+..++....+++.
T Consensus 2 ~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~~~~~~e~~~ 81 (429)
T PRK09059 2 MRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEPGAEHRETIA 81 (429)
T ss_pred CcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCCCchhhhhHH
Confidence 56789999999998773 4789999999999998753211111256899999999999999999999876666678888
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC-CcccHHHHHHHHHcCCcEEEEccc
Q 010547 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMC 198 (507)
Q Consensus 120 ~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 198 (507)
...+.++++||||+++++ ++.|.....+.+....+.+.....+++.+++.+... .++..+++..+.+.|+.+++.
T Consensus 82 ~~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~~f~~--- 157 (429)
T PRK09059 82 SASRAAAAGGVTSIIMMP-DTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLRAAGAVAFTD--- 157 (429)
T ss_pred HHHHHHHhCCcEEEEecc-CCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHHhcCcEEEec---
Confidence 899999999999999999 777888888888888887777778888888777654 345567788888888888763
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHh
Q 010547 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 278 (507)
...+..+...+.++++.+++.+.++.+|+|+...+...+. +++..+...+...+|...|..++.+.+.+++.
T Consensus 158 ----~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~----~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~ 229 (429)
T PRK09059 158 ----GRRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVM----NEGLFASWLGLSGIPREAEVIPLERDLRLAAL 229 (429)
T ss_pred ----CCcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCc----CCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2234456677889999999999999999999887553333 33333445566789999999999999999997
Q ss_pred hccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHh
Q 010547 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (507)
Q Consensus 279 ~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 358 (507)
. +.++|+.|+++. .+++.++.+++.|+.+++++||||+.++.+.+..+++.++.+||+|...++..+++++.
T Consensus 230 ~-------~~~~hi~hvs~~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~ 301 (429)
T PRK09059 230 T-------RGRYHAAQISCA-ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVA 301 (429)
T ss_pred H-------CCcEEEEecCCH-HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHH
Confidence 6 889999999998 99999999999999999999999999999988778889999999999999999999999
Q ss_pred cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 010547 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 438 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G 438 (507)
+|.+++++|||+|+....|. .+|+..+.|+.|++..++.++..+.+.+++++++++++|.|||++||++ .|+|++|
T Consensus 302 ~g~id~i~sDh~p~~~~~K~---~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~~~~~s~nPA~~~gl~-~G~l~~G 377 (429)
T PRK09059 302 SGTIDIIVSSHDPQDVDTKR---LPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRPAEIFGLP-AGTLKPG 377 (429)
T ss_pred cCCCcEEEeCCCCCCHHHCc---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-cCcccCC
Confidence 99999999999999887764 3689999999999999999887767778999999999999999999995 6999999
Q ss_pred CCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEe
Q 010547 439 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491 (507)
Q Consensus 439 ~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~ 491 (507)
++|||+++|++..|.++.. .+.++.. ++||.|..+.|.|..|+++|++||+
T Consensus 378 ~~ADlvl~d~~~~~~v~~~-~~~s~~~-~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 378 APADIIVIDLDEPWVVDPE-DLKSRSK-NTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred CcCCEEEECCCCCEEECcc-cCccCCC-CCCCCCCEEeeEEEEEEECCEEEee
Confidence 9999999999999999888 8888888 9999999999999999999999985
|
|
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=447.72 Aligned_cols=444 Identities=25% Similarity=0.346 Sum_probs=363.1
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC--CCCCCCCh
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGF 118 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~--~~~~~~~~ 118 (507)
++.+++|+|++|++++....++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..+ .....+++
T Consensus 3 ~~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~---~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~ 79 (486)
T PLN02942 3 SSTKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVP---DDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDF 79 (486)
T ss_pred CCCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCC---CCCeEEECCCCEEecCEeeeeeccCcccCCCcccchH
Confidence 3567899999999987767889999999999998764322 257899999999999999999999876 34467889
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCC-HHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH-HcCCcEEEEc
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTIS-TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSF 196 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 196 (507)
.+..+.++++||||++|+. .|.... .+.+....+.+. ...+++..+.+.........+++.++. +.|+.+++.|
T Consensus 80 ~s~s~aAl~gGvTTv~D~~---~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~ 155 (486)
T PLN02942 80 FSGQAAALAGGTTMHIDFV---IPVNGNLLAGYEAYEKKAE-KSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFF 155 (486)
T ss_pred HHHHHHHHcCCCeEEEeCC---CCCCCCHHHHHHHHHHHHh-hcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEE
Confidence 9999999999999999985 232223 555555444444 445777766554433222235566664 4588889988
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHH
Q 010547 197 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 276 (507)
+.+.+ ....+++.+.+.++.+++++.++.+|+|+...+..+..... ..+......+...+|...|..++.+.+.++
T Consensus 156 ~~~~~---~~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~-~~G~~~~~~~~~~rP~~~E~~av~~~~~la 231 (486)
T PLN02942 156 MAYKG---SLMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMI-ELGITGPEGHALSRPPLLEGEATARAIRLA 231 (486)
T ss_pred EecCC---CCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhhhhccCCchHHHHHHHHHHHHH
Confidence 75432 23468899999999999999999999998776554433221 223334445667789999999999999999
Q ss_pred HhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC----CCCceeEcCCCCChhhHHH
Q 010547 277 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEK 352 (507)
Q Consensus 277 ~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~ 352 (507)
... +.++|+.|+++. .+++.++.+++.|+.+++++||||+.++.+.+.. .+..++++||+|...+++.
T Consensus 232 ~~~-------g~~~~i~H~s~~-~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~ 303 (486)
T PLN02942 232 KFV-------NTPLYVVHVMSI-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKA 303 (486)
T ss_pred HHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHH
Confidence 876 889999999998 8889999999999999999999999999888753 5788899999999999999
Q ss_pred HHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHHHHHHHHhhchhHHhCC-C
Q 010547 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQLASWWSERPAKLAGQ-V 430 (507)
Q Consensus 353 ~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-gls~~~al~~~T~n~A~~lgl-~ 430 (507)
+++++++|+++++|||+++++...+..+.++|+..+.|+.+++..++.++....+. .++++++++++|.|||++||+ +
T Consensus 304 L~~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 304 LQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYP 383 (486)
T ss_pred HHHHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999988877655689999999999999998888765544 599999999999999999999 6
Q ss_pred CCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC-CCCCcccc
Q 010547 431 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP-AACGSPIL 505 (507)
Q Consensus 431 ~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~-~~~~~~~~ 505 (507)
++|+|++|++|||+++|++..+.++.. .+.++.. ++||.+..+.|.|..||++|++||++|+++. ...|++++
T Consensus 384 ~~G~l~~G~~ADlv~vd~~~~~~v~~~-~~~s~~~-~~py~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~~G~~~~ 457 (486)
T PLN02942 384 RKGAILAGSDADIIILNPNSTFTISAK-THHSRID-TNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIE 457 (486)
T ss_pred CCCCcCCCCcCCEEEEcCCccEEEcHH-HccccCC-CCCccCcEeeeeEEEEEECCEEEEECCEEeccCCCceEec
Confidence 789999999999999999999999865 5566777 9999999999999999999999999999964 34699886
|
|
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=444.58 Aligned_cols=441 Identities=27% Similarity=0.420 Sum_probs=367.2
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC--CCCCCChhHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPSG 121 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~--~~~~~~~~~~ 121 (507)
+++|+|++|+++++..+++|+|+||||++|++. + +.++||++|++|+|||||+|+|+..+. ....+++...
T Consensus 2 d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~---~----~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~ 74 (459)
T PRK08323 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN---L----GDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETG 74 (459)
T ss_pred cEEEECCEEEcCCCceEEEEEEECCEEEEEecC---C----CceEEECCCCEEeccEEeeeeccccccCCccccCcHHHH
Confidence 579999999998888889999999999999875 1 568999999999999999999997542 3456778888
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 201 (507)
.+.++++||||+++++ .+.|.....+.+....+.......+++..+........+..+++.++.+.|+.+++.++.+
T Consensus 75 ~~~a~~~GvTt~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~-- 151 (459)
T PRK08323 75 TRAAACGGTTTIIDFA-LQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITSFKLFMAY-- 151 (459)
T ss_pred HHHHHhCCCCEEEeCc-CCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHHHcCCCEEEEEEec--
Confidence 8899999999999987 5555555566666666665566677776655443333344667778888898899988754
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
...+..+++++.++++.+++++.++.+|++....+....... ...+......+...+|...+..++.+.++++...
T Consensus 152 -~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~-~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~-- 227 (459)
T PRK08323 152 -KGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKL-LAEGKTGPEYHALSRPPEVEGEATNRAIMLAELA-- 227 (459)
T ss_pred -CCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHH-HHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHh--
Confidence 233568899999999999999999999998766544333211 1233444455677789999999999999999976
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC----CCCceeEcCCCCChhhHHHHHHHH
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLWEAL 357 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~l 357 (507)
+.++|+.|+++. ++++.++.+++.|+.+++++||||+.++.+.+.. .+..++.+||+|...+++.+++++
T Consensus 228 -----~~~~~i~H~s~~-~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l 301 (459)
T PRK08323 228 -----GAPLYIVHVSCK-EALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGL 301 (459)
T ss_pred -----CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHh
Confidence 889999999998 8999999999999999999999999999888754 367889999999999999999999
Q ss_pred hcCCeeEEeCCCCCCChhhhcc-ccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 358 MDGHIDMLSSDHSPTVPELKLL-DEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 358 ~~G~~~~lgtD~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
.+|++++++||++|++...+.. ...+|+..+.|+.+.+..++.++... ....++++++++++|.|||++||+ +++|+
T Consensus 302 ~~G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~ 381 (459)
T PRK08323 302 QDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGT 381 (459)
T ss_pred hcCCeeEEECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcc
Confidence 9999999999999998777652 33468899999999999999988654 455699999999999999999999 77899
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCC-CCCccccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 506 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~-~~~~~~~~ 506 (507)
|++|+.|||+++|++..|.++.. .+.+... ++||.+..+.|.|..||++|++||++|+++.. ..|++++.
T Consensus 382 l~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~s~~~g~~~~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~ 452 (459)
T PRK08323 382 IAVGADADIVIWDPNATKTISAS-TLHSNVD-YNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKR 452 (459)
T ss_pred cCCCCcCCEEEEcCCcccccCHH-HHhhcCC-CCcccCcEEeeeEEEEEECCEEEEECCEEeccCCCceEeeC
Confidence 99999999999999998888776 6777777 99999999999999999999999999999865 47999874
|
|
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=443.89 Aligned_cols=443 Identities=28% Similarity=0.428 Sum_probs=358.7
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC--CCCCCCChhHHH
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGT 122 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~--~~~~~~~~~~~~ 122 (507)
++|+|++|+++++..+++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..+ .....+++....
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~---~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s 77 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPP---DAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGT 77 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHH
Confidence 479999999988877899999999999998754222 246899999999999999999999765 244667788888
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHH-HHHHHHcCCcEEEEcccCCC
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA-LEALLNAGVLGLKSFMCPSG 201 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~ 201 (507)
+.++++||||+++++ .+.|.....+.+....+.......+++..+...........++ +..+.+.|+..++.|+.+
T Consensus 78 ~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~-- 154 (454)
T TIGR02033 78 KAAAAGGTTTIIDFA-LPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAY-- 154 (454)
T ss_pred HHHHhCCCCEEEeCc-CCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeec--
Confidence 899999999999998 5555555566666666555555566666554332222222333 455556788889887644
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
+..+..+++.+.++++.|++++.++.+|+|............. ..+......+...+|...+..++.+.+.++...
T Consensus 155 -~~~~~~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~-- 230 (454)
T TIGR02033 155 -KNLLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLL-AQGKTGPEYHALSRPPESEAEAVARAIALAALA-- 230 (454)
T ss_pred -CCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHh--
Confidence 2345689999999999999999999999987665443333211 223333344566688888999999999998865
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC---CCCceeEcCCCCChhhHHHHHHHHh
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALM 358 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~l~ 358 (507)
+.++|+.|++++ .+++.++.+++.|+.+++++|||++.++.+.+.. .....+.+||+|...+++.+++++.
T Consensus 231 -----~~~~~i~H~s~~-~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~ 304 (454)
T TIGR02033 231 -----NAPLYVVHVSTA-SAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALS 304 (454)
T ss_pred -----CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhh
Confidence 889999999998 8899999999999999999999999999888753 4677899999999999999999999
Q ss_pred cCCeeEEeCCCCCCChhhhc-cccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCcc
Q 010547 359 DGHIDMLSSDHSPTVPELKL-LDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAI 435 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl-~~~G~I 435 (507)
+|+++++|||+.+++...+. .....|+..+.|+.+++..++.++.... +..++++++++++|.|||++||+ +++|+|
T Consensus 305 ~G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l 384 (454)
T TIGR02033 305 SGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKGTI 384 (454)
T ss_pred cCCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCcc
Confidence 99999999999999876652 2234688889999999999999987655 44699999999999999999999 668999
Q ss_pred ccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCcccc
Q 010547 436 AIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPIL 505 (507)
Q Consensus 436 ~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~ 505 (507)
++|++|||+++|++.++.++.. .+.+... ++||.+....|.|..||++|++||++|+++... .|+|++
T Consensus 385 ~~G~~AD~~i~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~ 453 (454)
T TIGR02033 385 AVGSDADIVIWDPNRTTVISAE-THHDNAD-YNPFEGFKVQGAVVSVLSRGRVVVEDGQFVGTAGSGRFIK 453 (454)
T ss_pred ccCCcCCEEEEcCCcCeeechH-HhhccCC-CCcccCeEEeeeEEEEEECCEEEEECCEEecCCCCcceec
Confidence 9999999999999999888766 6677778 999999999999999999999999999998654 599986
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=432.83 Aligned_cols=414 Identities=27% Similarity=0.385 Sum_probs=362.7
Q ss_pred cceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChh
Q 010547 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~ 119 (507)
+.+++|+|++|+++.+ ...++|+|+||+|++|++..... +.+.++||++|++|+|||||+|+|+..++....+++.
T Consensus 1 ~~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~--~~~~~~iDa~G~~vlPG~ID~H~H~~~~~~~~~e~~~ 78 (418)
T PRK07369 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPI--PPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLA 78 (418)
T ss_pred CCCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccC--CCCCEEEECCCCEEecCEEecccccCCCCcCCCccHH
Confidence 4578999999998654 46789999999999998654211 1257899999999999999999999888777889999
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC-cccHHHHHHHHHcCCcEEEEccc
Q 010547 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKSFMC 198 (507)
Q Consensus 120 ~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~ 198 (507)
+..+.++.+||||+++++ ++.|.....+.+....+.++...++++..++.+.... ....+++.++.+.|+.+|+.
T Consensus 79 s~~~aa~~GGvTtv~~~p-n~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~~~Gv~~f~~--- 154 (418)
T PRK07369 79 SLAAAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFTD--- 154 (418)
T ss_pred HHHHHHHhCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHHHCCCEEEEC---
Confidence 999999999999999999 7888888999999988888888889999888776543 24567788888889988873
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHh
Q 010547 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 278 (507)
+.+..+...+.++++.+++++.++.+|+|+...+..++. +++..+...++..+|...|..++.+.+.+++.
T Consensus 155 -----~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~----~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~ 225 (418)
T PRK07369 155 -----GQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVM----REGLLALRLGLPGDPASAETTALAALLELVAA 225 (418)
T ss_pred -----CCcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcc----cCChhHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 123456778999999999999999999999887654443 34444555667889999999999999999997
Q ss_pred hccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHh
Q 010547 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (507)
Q Consensus 279 ~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 358 (507)
+ +.++|+.|+++. ++++.++.++++|+.+++++||||+.++.+.+..++..++++||+|...+++.+++++.
T Consensus 226 ~-------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~ 297 (418)
T PRK07369 226 I-------GTPVHLMRISTA-RSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVR 297 (418)
T ss_pred H-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHh
Confidence 6 899999999999 99999999999999999999999999999998777888999999999999999999999
Q ss_pred cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCcccc
Q 010547 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAI 437 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl~~~G~I~~ 437 (507)
+|.+++++|||+|+...++. .+|+..+.|+.|++..++.+++... +.+++++++++++|.|||++||++ .|+|++
T Consensus 298 ~G~Id~i~SDHaP~~~~~K~---~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~-~G~i~~ 373 (418)
T PRK07369 298 TGVIDAIAIDHAPYTYEEKT---VAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE-PPSLAP 373 (418)
T ss_pred cCCCCEEEcCCCCCCHHHcc---CCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC-cCcccC
Confidence 99999999999999987764 3699999999999999999997655 567999999999999999999995 599999
Q ss_pred CCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEE
Q 010547 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484 (507)
Q Consensus 438 G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v 484 (507)
|++|||+++|++..|.++.. .+.++.. ++||.|..+.|.|..||+
T Consensus 374 G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~ 418 (418)
T PRK07369 374 GQPAELILFDPQKTWTVSAQ-TLHSLSR-NTPWLGQTLKGRVLQTWV 418 (418)
T ss_pred CCcCCEEEEcCCCCEEECcc-cccCCCC-CCCCCCCEeeeEEEEEEC
Confidence 99999999999999999988 8889999 999999999999999985
|
|
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=440.32 Aligned_cols=435 Identities=29% Similarity=0.442 Sum_probs=359.6
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC--CCCCChhHHH
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGT 122 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~--~~~~~~~~~~ 122 (507)
++|+|++|++++++.+++|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+..+.. ...+++....
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~---~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~ 77 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAP---GGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGT 77 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCC---CCceEEECCCCEEecCEEeccccccccccCccCcchHHHHH
Confidence 479999999988888899999999999998764322 14689999999999999999999976532 4567788888
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCC
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 202 (507)
+.++.+||||+++++ .+.|.....+.+....+.......+++..+...........+++.++.+.|+.+++.++.+
T Consensus 78 ~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~g~~~ik~~~~~--- 153 (447)
T cd01314 78 RAAAAGGTTTIIDFA-IPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFKVFMAY--- 153 (447)
T ss_pred HHHHhCCCcEEEeCC-CCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHHHcCCCEEEEEecc---
Confidence 999999999999997 5556455566666665555555666666555443333344567777777888889988654
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccC
Q 010547 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (507)
Q Consensus 203 ~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 282 (507)
......+++.++++++.+++++.++.+|+|+...+........ ..+......+...+|...|..++.+.+.+++..
T Consensus 154 ~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~--- 229 (447)
T cd01314 154 KGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL-AQGKTGPEYHALSRPPEVEAEATARAIRLAELA--- 229 (447)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHh---
Confidence 2334679999999999999999999999987766554433211 223333345566789989999999999998865
Q ss_pred CCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC--C-CCCceeEcCCCCChhhHHHHHHHHhc
Q 010547 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP--D-GDTRFKCAPPIRDAANKEKLWEALMD 359 (507)
Q Consensus 283 ~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~--~-~~~~~~~~p~~~~~~~~~~~~~~l~~ 359 (507)
+.++|+.|+++. ...+.++.+++.|+.+++++|||++.++.+.+. . .+..++.+||+|...++..+++++++
T Consensus 230 ----~~~~~~~H~s~~-~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~ 304 (447)
T cd01314 230 ----GAPLYIVHVSSK-EAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSS 304 (447)
T ss_pred ----CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhC
Confidence 889999999998 899999999999999999999999999988873 2 57788999999999999999999999
Q ss_pred CCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCcccc
Q 010547 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAI 437 (507)
Q Consensus 360 G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~ 437 (507)
|+++++|||+++++...++....+|+..+.|+.+++..++.++.... ...++++++++++|.|||++||+ +++|+|++
T Consensus 305 G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~ 384 (447)
T cd01314 305 GTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAV 384 (447)
T ss_pred CCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCC
Confidence 99999999999998887776545799999999999999999997765 44599999999999999999999 77899999
Q ss_pred CCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC
Q 010547 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 438 G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~ 497 (507)
|++|||+|+|++..+.++.. .+.++.. ++||.+..+.|.|..||++|++||++|+++.
T Consensus 385 G~~AD~vi~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v~~~~~~~~ 442 (447)
T cd01314 385 GSDADLVIWDPNAEKTISAD-THHHNVD-YNIFEGMKVKGWPVVTISRGKVVVEDGELVG 442 (447)
T ss_pred CCcCCEEEEeCCcCEEecHH-HhhccCC-CCcccCeEEeeeEEEEEECCEEEEECCEEec
Confidence 99999999999999988766 5667777 9999999999999999999999999999975
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=430.72 Aligned_cols=433 Identities=27% Similarity=0.411 Sum_probs=357.7
Q ss_pred cceEEEEecEEECCCC-ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhH
Q 010547 42 YNQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~-~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~ 120 (507)
+++++|+|++|+++++ ...++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+..++..+.+++..
T Consensus 2 ~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~---~~~~vid~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~ 78 (438)
T PRK07575 2 MMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISAT---AVDTVIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFT 78 (438)
T ss_pred cceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcccEEEeeeccCCCCCcCcchHHH
Confidence 3568999999999766 55789999999999998754322 1358999999999999999999998776778889999
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCC
Q 010547 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS 200 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 200 (507)
..+.++++||||+++++ ++.|.....+.+....+.+.....+++.++++.... ...++... .+..+++.|+...
T Consensus 79 ~~~aa~~gGvTt~~dmp-~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~~---~l~~l~~~--~~~~g~~~f~~~~ 152 (438)
T PRK07575 79 ASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPD---NLPELLTA--NPTCGIKIFMGSS 152 (438)
T ss_pred HHHHHHhCCEEEEEECC-CCCCCCCcHHHHHHHHHHhccCcEEEEEEEcccccc---CHHHHHHh--hCCeEEEEEEeeC
Confidence 99999999999999999 778888889988888888877788998888666532 23333322 3677888875322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
.. ..+......+.++ .+..+.++..|+++...+..... ...+......++..+|...|..++.+.+.++++.
T Consensus 153 ~~-~~~~~~~~~~~~~---~~~~~~~v~~h~e~~~l~~~~~~---~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~- 224 (438)
T PRK07575 153 HG-PLLVDEEAALERI---FAEGTRLIAVHAEDQARIRARRA---EFAGISDPADHSQIQDEEAALLATRLALKLSKKY- 224 (438)
T ss_pred CC-CcccCcHHHHHHH---HHhCCCEEEEeCcChHHHHhhhH---hhccCcCcccccccCcHHHHHHHHHHHHHHHHHH-
Confidence 11 1112233444443 33568999999998775332111 1222334455667789999999999999999987
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G 360 (507)
+.++|+.|+++. .+++.++..+ +..+++++||||+.++.+++...+..++.+||+|...+++.+++++++|
T Consensus 225 ------g~~lhi~HiSt~-~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G 295 (438)
T PRK07575 225 ------QRRLHILHLSTA-IEAELLRQDK--PSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDG 295 (438)
T ss_pred ------CCCEEEEECCCH-HHHHHHHHhc--CCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCHHHHHHHHHHHhCC
Confidence 899999999988 9999998765 4678999999999999998877788999999999999999999999999
Q ss_pred CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 361 ~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
.+++++|||+|++...+. .+|+..+.|+.+++..++.++....+.++|++++++++|.|||++||++++|+|++|++
T Consensus 296 ~id~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~~~~s~npAk~lgl~~~G~L~~G~~ 372 (438)
T PRK07575 296 VIDFIATDHAPHTLEEKA---QPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYD 372 (438)
T ss_pred CCCEEecCCCCCCHHHcc---CCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHcCCCCCCccCCCCc
Confidence 999999999999987764 36888889999999999999988877789999999999999999999965799999999
Q ss_pred CcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCcccc
Q 010547 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505 (507)
Q Consensus 441 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~ 505 (507)
|||+++|++.++.++.. .+.++.. ++||.+....|.|..||++|++||++|+++....|++++
T Consensus 373 ADlvi~D~~~~~~v~~~-~~~s~~~-~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~~~~~G~~~~ 435 (438)
T PRK07575 373 ADLVLVDLNTYRPVRRE-ELLTKCG-WSPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRGQALT 435 (438)
T ss_pred CCEEEEcCCCCEEEchH-HccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEccCCCceEee
Confidence 99999999999988766 7777888 999999999999999999999999999998877899886
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=431.58 Aligned_cols=439 Identities=27% Similarity=0.401 Sum_probs=363.0
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHH
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~ 122 (507)
.+++|+|++|++++++..++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+..++....+++.+..
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~ 78 (444)
T PRK09236 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAK---SADTVIDAAGRYLLPGMIDDQVHFREPGLTHKGDIASES 78 (444)
T ss_pred ccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCC---CCCeEEECCCCEECCCEEEcccccccCcccccccHHHHH
Confidence 56799999999987777899999999999998754321 256899999999999999999999876665667888899
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCC
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 202 (507)
+.++++||||+++++ ++.|.....+.+....+.+.....+++.++.+.. ....+++.++.+.|+.+++.|+....
T Consensus 79 ~aa~~~GvTtv~d~p-~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~e~~~l~~~g~~g~k~~~~~~~- 153 (444)
T PRK09236 79 RAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRSLANYSFYFGAT---NDNLDEIKRLDPKRVCGVKVFMGAST- 153 (444)
T ss_pred HHHHhCCcEEEEeCC-CCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccC---cccHHHHHHHHHccCcEEEEEeccCC-
Confidence 999999999999999 7778778888888877777777788888776443 22366777777789999999865321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc-cccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT-RSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 203 ~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
...+..+.+.+++++ +..+.++..|+|+...+...........+. .....+...+|...+..++.+.++++++.
T Consensus 154 ~~~~~~~~~~~~~~~---~~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~-- 228 (444)
T PRK09236 154 GNMLVDNPETLERIF---RDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKH-- 228 (444)
T ss_pred CCcccCcHHHHHHHH---HhcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHH--
Confidence 122233445565664 455899999999876654222110000011 12223445688889999999999999976
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~ 361 (507)
+.++|+.|+++. ..++.++..+..|.++++++|+|++.++++++...+..++.+|++|...+++.+++++++|+
T Consensus 229 -----~~~~hi~h~st~-~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~ 302 (444)
T PRK09236 229 -----GTRLHVLHISTA-KELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDR 302 (444)
T ss_pred -----CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhCCC
Confidence 889999999998 99999999999999999999999999999988878899999999999999999999999999
Q ss_pred eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCC
Q 010547 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHA 441 (507)
Q Consensus 362 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~A 441 (507)
+++++||+.++...++. .+|+.++.|+.+++..++.++....+.+++++++++++|.|||++||++++|+|++|+.|
T Consensus 303 i~~igtDh~p~~~~~k~---~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~~G~l~~G~~A 379 (444)
T PRK09236 303 IDVIATDHAPHTWEEKQ---GPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREGYWA 379 (444)
T ss_pred CcEEECCCCCCCHHHhc---CCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHhHHHhcCCCCCCccccCCcC
Confidence 99999999998766654 368888999999999999888877777899999999999999999999657999999999
Q ss_pred cEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCcccc
Q 010547 442 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505 (507)
Q Consensus 442 Dlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~ 505 (507)
||+++|++.+|.++.. .+.+... ++||.+....|.|..||++|++||++|+++....|++++
T Consensus 380 Dlvi~d~~~~~~~~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~G~~~~ 441 (444)
T PRK09236 380 DLVLVDLNSPWTVTKE-NILYKCG-WSPFEGRTFRSRVATTFVNGQLVYHNGQLVESCRGQRLE 441 (444)
T ss_pred CEEEEcCCCCEEEchH-HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEEccCcCceEee
Confidence 9999999999988877 6777888 999999999999999999999999999998767899886
|
|
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=429.35 Aligned_cols=433 Identities=29% Similarity=0.441 Sum_probs=359.2
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
+.+++|+|++|+++++...++|+|+||+|++|++....+ +.++||++|++|+|||||+|+|+..++....+++...
T Consensus 4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~----~~~~iD~~G~~v~PG~ID~HvH~~~~~~~~~e~~~t~ 79 (444)
T PRK09060 4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGAS----AGEVIDCRGLHVLPGVIDSQVHFREPGLEHKEDLETG 79 (444)
T ss_pred cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCCCC----CceEEECCCCEEccCEEeccccccCCCCCccchHHHH
Confidence 457899999999988877899999999999998653322 4689999999999999999999987766677889999
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH-HcCCcEEEEcccCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPS 200 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 200 (507)
.+.++++||||+++++ ++.|.....+.+....+.+....++++.++++...... +++.++. ..|+.+++.|+.+.
T Consensus 80 ~~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~ 155 (444)
T PRK09060 80 SRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSS 155 (444)
T ss_pred HHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccC
Confidence 9999999999999999 77788888888888888877777888888765543332 3333332 24888999887542
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
. ...+..++..+.++++ ..+..+.+|+|+...+... ... ...+ ....++..+|...|..++.+.+.+++..
T Consensus 156 ~-~~~~~~d~~~l~~~~~---~~~~~v~~H~E~~~l~~~~-~~~-~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~- 226 (444)
T PRK09060 156 T-GDLLVEDDEGLRRILR---NGRRRAAFHSEDEYRLRER-KGL-RVEG--DPSSHPVWRDEEAALLATRRLVRLARET- 226 (444)
T ss_pred C-CCcccCCHHHHHHHHH---hCCCeEEEECCCHHHHHHH-HHH-HhcC--CcccccccCCHHHHHHHHHHHHHHHHHH-
Confidence 2 1222345556666654 3588999999998764421 111 1222 4455677789999999999999999976
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccC-CCCCCCceeEcCCCCChhhHHHHHHHHhc
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE-IPDGDTRFKCAPPIRDAANKEKLWEALMD 359 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 359 (507)
+.++|+.|+++. ..++.++..++ .+++++||||+.++.+. +..++..++.+||+|...+++.+++++.+
T Consensus 227 ------~~~lhi~h~st~-~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~ 296 (444)
T PRK09060 227 ------GRRIHVLHVSTA-EEIDFLADHKD---VATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQ 296 (444)
T ss_pred ------CCCEEEEeCCCH-HHHHHHHHhCC---CeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhC
Confidence 899999999998 88999887655 37899999999999887 66778889999999999999999999999
Q ss_pred CCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCC
Q 010547 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN 439 (507)
Q Consensus 360 G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~ 439 (507)
|.+++++|||.|+....+.. +|+.++.|+.+++..++.++..+.+.+++++++++++|.|||++||++++|+|++|+
T Consensus 297 G~id~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~~~~~~~~s~~pa~~~gl~~~G~l~~G~ 373 (444)
T PRK09060 297 GVVDVLGSDHAPHTLEEKAK---PYPASPSGMTGVQTLVPIMLDHVNAGRLSLERFVDLTSAGPARIFGIAGKGRIAVGY 373 (444)
T ss_pred CCccEEecCCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCcccCCC
Confidence 99999999999998777643 688889999999999999887766667999999999999999999996689999999
Q ss_pred CCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCccccc
Q 010547 440 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 506 (507)
Q Consensus 440 ~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~~ 506 (507)
.|||+++|.+..|.++.. .+.++.. ++||.+..+.|.|..|+++|++||++|++.....|++++.
T Consensus 374 ~ADlvl~d~~~~~~v~~~-~~~s~~~-~sp~~g~~l~g~~~~tiv~G~~v~~~g~~~~~~~G~~~~~ 438 (444)
T PRK09060 374 DADFTIVDLKRRETITNE-WIASRCG-WTPYDGKEVTGWPVGTIVRGQRVMWDGELVGPPTGEPVRF 438 (444)
T ss_pred cCCEEEEcCCCCEEEChH-HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEEccCCCccCccc
Confidence 999999999999988876 6777788 9999999999999999999999999999987778998874
|
|
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-53 Score=426.23 Aligned_cols=433 Identities=32% Similarity=0.450 Sum_probs=361.6
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
+.+++|+|++|++.+.+.+++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+..++....+++.+.
T Consensus 1 ~~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~g~~~~e~~~~~ 77 (443)
T PRK02382 1 MRDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGS---SSEEVIDARGMLLLPGGIDVHVHFREPGYTHKETWYTG 77 (443)
T ss_pred CceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcCCEeeeeeeccCCCCCchhhHHHH
Confidence 357899999999877777899999999999998653322 24689999999999999999999987766667888899
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEE-EEcccCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL-KSFMCPS 200 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 200 (507)
.+.++++||||+++++ .+.|.....+.+....+.+.....+++.++++.. ...+.+.++.+.|+.++ +.|+...
T Consensus 78 ~~aa~~gGvTtv~~~~-~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~~~gv~~~gkv~~~~~ 152 (443)
T PRK02382 78 SRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLWERGVFALGEIFMADS 152 (443)
T ss_pred HHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHHhcCccceeEEEEEec
Confidence 9999999999999999 7788878788888877777766677777665432 12445677777788887 6665322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
. +....+++.+.++++.+++.+.++..|+++.......... ..+......++..+|...|..++.+.+.++++.
T Consensus 153 ~--~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~---~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~- 226 (443)
T PRK02382 153 T--GGMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKL---LKGDADADAWSAYRPAAAEAAAVERALEVASET- 226 (443)
T ss_pred C--CCcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHh---hcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHh-
Confidence 1 1124567899999999999999999999987764422111 222234445667789999999999999999976
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G 360 (507)
|.++|+.|+++. .+++.++.++ +++++||||+.++.+.+...+..++++||+|...+++.+++++.+|
T Consensus 227 ------g~~~hi~h~ss~-~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g 294 (443)
T PRK02382 227 ------GARIHIAHISTP-EGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDG 294 (443)
T ss_pred ------CCCEEEEECCCH-HHHHHHHHCC-----cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCC
Confidence 899999999998 8999988653 8899999999999998877778889999999999999999999999
Q ss_pred CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 361 ~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
.+++++|||+|+....+.. +|+.++.|+.+++..++.++..+.+.+++++++++++|.|||++||++++|+|++|+.
T Consensus 295 ~i~~i~sDh~P~~~~~K~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~~~~~t~~pA~~~g~~~~G~l~~G~~ 371 (443)
T PRK02382 295 TIDVVASDHAPHTREEKDA---DIWDAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLDGKGRIAEGYD 371 (443)
T ss_pred CCCEEEcCCCCCCHHHhcC---ChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCccCCCCc
Confidence 9999999999998777643 6999999999999999999977777789999999999999999999976899999999
Q ss_pred CcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCccccc
Q 010547 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPILA 506 (507)
Q Consensus 441 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 506 (507)
|||+++|++..+.+... .+.++.. ++||.+.... .|..||++|+++|++|+++... .|++++.
T Consensus 372 AD~vi~d~~~~~~~~~~-~~~s~~~-~sp~~g~~~~-~v~~tiv~G~~v~~~~~~~~~~~~G~~~~~ 435 (443)
T PRK02382 372 ADLVLVDPDAAREIRGD-DLHSKAG-WTPFEGMEGV-FPELTMVRGTVVWDGDDINAKRGRGEFLRG 435 (443)
T ss_pred CCEEEEcCCCcEEEcHH-HhcccCC-CCCcCCCEec-eEEEEEECCEEEEECCEEecCCCCceEeCC
Confidence 99999999998888766 6677777 9999998866 8899999999999999988654 7999975
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=396.27 Aligned_cols=447 Identities=28% Similarity=0.394 Sum_probs=388.3
Q ss_pred CCcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC--CCCCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEG 117 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~--~~~~~~~ 117 (507)
..+..++|+|++|++.|.....||+++||.|++|+++..++. +.++||++|++|+||.||.|+|+..+ +...+++
T Consensus 11 v~s~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ipg---g~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~Dd 87 (522)
T KOG2584|consen 11 VASNRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIPG---GVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDD 87 (522)
T ss_pred ccccceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcCC---CceEEecCCcEEecCccCccceeccccCCccchhh
Confidence 346679999999999999999999999999999999987764 78999999999999999999999987 7788999
Q ss_pred hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH-HcCCcEEEEc
Q 010547 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSF 196 (507)
Q Consensus 118 ~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 196 (507)
+.+..++++.+|+|+++|+++ ..+..+..+.++.....++.+..++++++.++..=.+.-.++++-+. ..|..+|+.|
T Consensus 88 F~~GTkAAlaGGtTmiID~vl-p~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~f 166 (522)
T KOG2584|consen 88 FFQGTKAALAGGTTMIIDFVL-PDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFF 166 (522)
T ss_pred hhcccHHHhcCCceEEEEEec-CCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEee
Confidence 999999999999999999983 23345668889999999999999999999999887776677777665 4799999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHH
Q 010547 197 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 276 (507)
+.+ .+.+..++++|++.++.+++.+...++|+|+.+.+.....+.. ..+......+..++|+..|.+++.+.+.++
T Consensus 167 may---k~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l-~~gitgPEgh~lSRPee~EaEA~~rai~ia 242 (522)
T KOG2584|consen 167 MAY---KDLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLL-ELGITGPEGHELSRPEELEAEATNRAITIA 242 (522)
T ss_pred eee---ccccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHH-HcCCcCcccccccCchhhhHHHHHHHHHHH
Confidence 866 5567899999999999999999999999999998776655543 444445555667899999999999999999
Q ss_pred HhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC----CCCCceeEcCCCCChh-hHH
Q 010547 277 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP----DGDTRFKCAPPIRDAA-NKE 351 (507)
Q Consensus 277 ~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~-~~~ 351 (507)
.+. ..++.++|+.+. ...+.+..+++.|--+..+.....+..+...+- ...+.+..+||+|... ...
T Consensus 243 ~~~-------ncPlyvvhVmsk-saa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~ 314 (522)
T KOG2584|consen 243 RQA-------NCPLYVVHVMSK-SAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPD 314 (522)
T ss_pred Hhc-------CCCcceEEEeeh-hHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHH
Confidence 987 777999999887 888999999888766555444444444433332 2466788999998655 778
Q ss_pred HHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcC-CCHHHHHHHHhhchhHHhCC-
Q 010547 352 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQ- 429 (507)
Q Consensus 352 ~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-ls~~~al~~~T~n~A~~lgl- 429 (507)
.++++|..|..-..|||+++++...+.++.++|...+.|++|++.+|+.+|......| +++.+.+...++|.|+++++
T Consensus 315 ~L~~lLa~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAkifnlY 394 (522)
T KOG2584|consen 315 GLMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLY 394 (522)
T ss_pred HHHHHHhcCccceeecCCCCCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhheecc
Confidence 8999999999999999999999999999999999999999999999999998876654 89999999999999999999
Q ss_pred CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcc-cCCCCCccc
Q 010547 430 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH-APAACGSPI 504 (507)
Q Consensus 430 ~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~-~~~~~~~~~ 504 (507)
+++|+|++|++||+||||++....+... ...+... +..|+|....|.+.-|+..|++||.+|++ +..+.|||+
T Consensus 395 prKGrIavGsDADiVIwdp~at~tIS~~-th~~~~d-~NifEGm~~~G~plvtIsrGriv~eng~~~v~~g~G~fi 468 (522)
T KOG2584|consen 395 PRKGRIAVGSDADIVIWDPNATKTISAK-THHSAND-FNIFEGMTVHGVPLVTISRGRVVYENGNLVVTEGSGRFI 468 (522)
T ss_pred CcCceecccCCCcEEEECCCcceEeccc-ccccccc-ceeecCcEecceeEEEEeCCeEEEecCcEEEecCCCcee
Confidence 9999999999999999999999999888 7788888 99999999999999999999999999999 467888886
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=418.26 Aligned_cols=419 Identities=32% Similarity=0.481 Sum_probs=351.5
Q ss_pred eEEEEecEEECCCC-ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHH
Q 010547 44 QYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (507)
Q Consensus 44 ~~~i~n~~i~~~~~-~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~ 122 (507)
+++|+|++|+++++ +.+++|.|+||+|.+|++.... ++.++||++|++|+|||||+|+|+..++....+.+....
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~~----~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~~~ 77 (423)
T PRK09357 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIEA----EGAEVIDATGLVVAPGLVDLHVHLREPGQEDKETIETGS 77 (423)
T ss_pred cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCCC----CCCeEEECCCCEEeCCEEecccccCCCCccccccHHHHH
Confidence 47999999998854 5689999999999999865221 256899999999999999999999776666778889999
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC-CcccHHHHHHHHHcCCcEEEEcccCCC
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSG 201 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 201 (507)
+.++++||||+++++ .+.|.....+.+....+.+.....+++..++.+... .....+++.++.+.|+.+++.
T Consensus 78 ~~a~~~GvTt~~d~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~------ 150 (423)
T PRK09357 78 RAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALKEAGVVAFSD------ 150 (423)
T ss_pred HHHHhCCCeEEEecC-CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHHhCCcEEEEC------
Confidence 999999999999998 777877778888888887777776777776554322 123456666666677766653
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
.+....+++.++++++.+++++.++.+|+++.......+. ..+......+...+|...|...+.+.+.++++.
T Consensus 151 -~~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~----~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~-- 223 (423)
T PRK09357 151 -DGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVM----NEGEVSARLGLPGIPAVAEEVMIARDVLLAEAT-- 223 (423)
T ss_pred -CCcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccc----cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHH--
Confidence 2233567889999999999999999999998765443332 222223345567789999999999999999876
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~ 361 (507)
|.++|+.|+++. ...+.++.+++.|+.+++++|||++.++.+.+..++..++.+||+|...++..+++++++|.
T Consensus 224 -----g~~~hi~H~s~~-~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~ 297 (423)
T PRK09357 224 -----GARVHICHVSTA-GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGT 297 (423)
T ss_pred -----CCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCC
Confidence 899999999998 99999999999999999999999999999988777888999999999999999999999999
Q ss_pred eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 362 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
++++|||++|++...+.. +|+..+.|+.+++..++.++... .+.+++++++++++|.|||+++|++. |+|++|++
T Consensus 298 ~~~i~sDh~p~~~~~k~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~-G~i~~G~~ 373 (423)
T PRK09357 298 IDAIATDHAPHAREEKEC---EFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA-GPLAEGEP 373 (423)
T ss_pred CeEEecCCCCCChHHccC---CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC-CccCCCCc
Confidence 999999999998776642 58889999999999999888744 45579999999999999999999954 99999999
Q ss_pred CcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 441 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
|||+++|.+..|.++.. .+.++.. ++||.+..+.|.|..||++|++||++
T Consensus 374 AD~~i~d~~~~~~v~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 374 ADLVIFDPEAEWTVDGE-DFASKGK-NTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred CCEEEEcCCCCEEEchh-hcccCCC-CCCCcCCEEeeEEEEEEECCEEEecC
Confidence 99999999999888766 6677788 99999999999999999999999975
|
|
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=413.57 Aligned_cols=383 Identities=25% Similarity=0.316 Sum_probs=329.4
Q ss_pred EEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCC
Q 010547 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 142 (507)
Q Consensus 63 I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p 142 (507)
|+|+||||++|++.. . +.++||++|++|+|||||+|+|+..++.. .+++.+..+.++++||||+++++ ++.|
T Consensus 1 i~I~dG~I~~i~~~~--~----~~~viDa~g~~vlPG~ID~HvH~~~~~~~-~e~~~t~s~aA~aGGvTtv~dmp-nt~P 72 (386)
T PRK08417 1 IRIKDGKITEIGSDL--K----GEEILDAKGKTLLPALVDLNVSLKNDSLS-SKNLKSLENECLKGGVGSIVLYP-DSTP 72 (386)
T ss_pred CEEECCEEEEecCCC--C----CCeEEECCCCEEccCeeEEeeeeCCCCcC-hhhHHHHHHHHHcCCcEEEEeCC-CCCC
Confidence 689999999998653 1 57899999999999999999999876544 58899999999999999999999 7788
Q ss_pred CCCCHHHHHHHHHHHhc--CceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHH
Q 010547 143 STISTETLKLKVDAAEK--RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVL 220 (507)
Q Consensus 143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 220 (507)
.....+.+....+.+.. ...+++.. .. ..++..+++..+.+.|+.+++.+ + ..+++.+.++++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~~l~~~Gv~~~k~~-------~--~~~~~~l~~~~~~a 139 (386)
T PRK08417 73 AIDNEIALELINSAQRELPMQIFPSIR---AL-DEDGKLSNIATLLKKGAKALELS-------S--DLDANLLKVIAQYA 139 (386)
T ss_pred CCCCHHHHHHHHHHhhccCCcEEEEEE---EE-CCCccHHHHHHHHHCCCEEEECC-------C--CCCHHHHHHHHHHH
Confidence 88888888877766554 23344322 22 23445778888888999888752 1 46788999999999
Q ss_pred HhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH
Q 010547 221 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 300 (507)
Q Consensus 221 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~ 300 (507)
++.+.++..|+|+...+...+. .++..+...++..+|...|..++.+.+.+++++ +.++|+.|++++ .
T Consensus 140 ~~~g~~V~~HaEd~~~~~~~~~----~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~-------~~~lhi~hvS~~-~ 207 (386)
T PRK08417 140 KMLDVPIFCRCEDSSFDDSGVM----NDGELSFELGLPGIPSIAETKEVAKMKELAKFY-------KNKVLFDTLALP-R 207 (386)
T ss_pred HHcCCEEEEeCCCHHHhhHHHH----hcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-H
Confidence 9999999999999877654443 334445666778899999999999999999977 889999999999 9
Q ss_pred HHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccc
Q 010547 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 380 (507)
Q Consensus 301 ~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~ 380 (507)
+++.++.+++.|+.+++++||||+.++.+++..++..++.+||+|...+++.+++++.+|.+++++|||+|+...+|.
T Consensus 208 ~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~-- 285 (386)
T PRK08417 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKD-- 285 (386)
T ss_pred HHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc--
Confidence 999999999999999999999999999998877788999999999999999999999999999999999999877664
Q ss_pred cCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCC
Q 010547 381 EGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459 (507)
Q Consensus 381 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~ 459 (507)
.+|+.++.|+.+++..++.++.... +.+++++++++++|.|||++||+++ |+|++|+.|||+++|.+..+.++..
T Consensus 286 -~~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~-G~l~~G~~ADlvi~d~~~~~~~~~~-- 361 (386)
T PRK08417 286 -LAFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNS-GEIEVGKEADLVLFDPNESTIIDDN-- 361 (386)
T ss_pred -CCHhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCeEeCCC--
Confidence 3689999999999999999998765 4569999999999999999999964 9999999999999999987776543
Q ss_pred cccCCCCCccccCcEEeeEEEEEEECCEEEEe
Q 010547 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491 (507)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~ 491 (507)
++||.+..+.|.|..||++|++||.
T Consensus 362 -------~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 362 -------FSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred -------CCCccCCEEeccEEEEEECCEEEeC
Confidence 8999999999999999999999984
|
|
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-52 Score=410.34 Aligned_cols=404 Identities=25% Similarity=0.337 Sum_probs=335.8
Q ss_pred EEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHH
Q 010547 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAA 125 (507)
Q Consensus 46 ~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~ 125 (507)
.|.| ++++.+....++|+|+||||++|++... +.++||++| +|+|||||+|+|+..++....+++.+..+++
T Consensus 2 ~~~~-~~~~~~~~~~~di~I~dGkI~~i~~~~~------~~~~ida~g-~vlPG~ID~HvH~r~pg~~~ked~~s~s~AA 73 (409)
T PRK01211 2 AICG-NFYYKGKFDYLEIEVEDGKIKSIKKDAG------NIGKKELKG-AILPAATDIHVHFRTPGETEKEDFSTGTLSA 73 (409)
T ss_pred eeec-eeEEcCcEEEEEEEEECCEEEEecCCCC------CceEEEecc-EEcCCeEEeeeccCCCCCcccCcHHHHHHHH
Confidence 4544 4455556678999999999999986542 467999999 9999999999999999888999999999999
Q ss_pred HhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCC
Q 010547 126 AAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDF 205 (507)
Q Consensus 126 l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 205 (507)
+.+||||++++| ++.|.....+.+....+.++....+++.++++...... ++.+.|+.+++.|+.+......
T Consensus 74 aaGGvTtv~dmP-nt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~-------~~~~~g~~~~k~f~~~~~~~~~ 145 (409)
T PRK01211 74 IFGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA-------LILDERSIGLKVYMGGTTNTNG 145 (409)
T ss_pred HcCCcEEEEECC-CCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh-------hHHhccCcEEEEEcCCCcCCCc
Confidence 999999999999 78888899999999998888888999988876633221 1234488999998643111000
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCC
Q 010547 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (507)
Q Consensus 206 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 285 (507)
..... ..++.+++.+.++.+|+|+...++.+.... . ....+...+|...|..++.+.+.++.+
T Consensus 146 ~~~~~----~~l~~~~~~g~~v~~H~E~~~l~~~~~~~~----~--~~~~~~~~rP~~aE~~ai~~~~~la~~------- 208 (409)
T PRK01211 146 TDIEG----GEIKKINEANIPVFFHAELSECLRKHQFES----K--NLRDHDLARPIECEIKAVKYVKNLDLK------- 208 (409)
T ss_pred cccCH----HHHHHHHccCCEEEEeccChHHhhhhhhCc----c--hHhhCCCCCCHHHHHHHHHHHHHHhCC-------
Confidence 01122 244666789999999999988755433221 1 223467779999999999999998884
Q ss_pred CCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEE
Q 010547 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 365 (507)
Q Consensus 286 ~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~l 365 (507)
++|+.|+++. .++ ..+++++||||+.++.+. ..++.++++||+|...+++.+++++.+|.++++
T Consensus 209 ---~~hi~HvSt~-~~~----------~~vt~Ev~phhL~l~~~~--~~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i 272 (409)
T PRK01211 209 ---TKIIAHVSSI-DVI----------GRFLREVTPHHLLLNDDM--PLGSYGKVNPPLRDRWTQERLLEEYISGRFDIL 272 (409)
T ss_pred ---CcEEEEecCh-hhc----------CceEEEecHHHHcccccc--ccCCceeEcCCCCCHHHHHHHHHHHhCCCCCEE
Confidence 3999999997 544 268999999999999887 367899999999999999999999999999999
Q ss_pred eCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEE
Q 010547 366 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 445 (507)
Q Consensus 366 gtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvv 445 (507)
+|||+|+...++ .+|+.++.|+.+++..++.++....+.++|+++++++.|.|||++||++ +|+|++|++|||+|
T Consensus 273 ~SDHaP~~~~eK----~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~v~~~s~nPAki~gl~-kG~l~~G~~ADlvi 347 (409)
T PRK01211 273 SSDHAPHTEEDK----QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIK-KGKIEEGYDADFMA 347 (409)
T ss_pred eCCCCCCChhHh----CCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC-CCcccCCCcCCEEE
Confidence 999999987665 2689999999999999999997666778999999999999999999995 79999999999999
Q ss_pred EcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCccccc
Q 010547 446 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 506 (507)
Q Consensus 446 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~~ 506 (507)
+|++..|.++.. .+.++.. ++||.|.... .|..|+++|++||++|++.....|+|++.
T Consensus 348 ~D~~~~~~v~~~-~~~s~~~-~spf~G~~~~-~v~~tiv~G~~v~~~~~~~~~~~G~~~~~ 405 (409)
T PRK01211 348 FDFTNIKKINDK-RLHSKCP-VSPFNGFDAI-FPSHVIMRGEVVIDNYELISERTGKFVPK 405 (409)
T ss_pred EcCCCeEEEChH-HhhccCC-CCCCCCCEec-cEEEEEECCEEEEECCEEccccCceEecc
Confidence 999999998877 7788888 9999999988 99999999999999999986678999874
|
|
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=412.77 Aligned_cols=406 Identities=33% Similarity=0.485 Sum_probs=349.0
Q ss_pred ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCC
Q 010547 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 58 ~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~ 137 (507)
+.+++|+|+||||++|++.. .+ .+.++||++|++|+|||||+|+|+..+.....+++....+.++++||||+++++
T Consensus 3 ~~~~~v~I~~g~I~~i~~~~-~~---~~~~~ida~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~ 78 (411)
T TIGR00857 3 ETEVDILVEGGRIKKIGKLR-IP---PDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP 78 (411)
T ss_pred eEEEEEEEECCEEEEeeccC-CC---CCCeEEECCCCEEecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEec
Confidence 45789999999999997522 11 246799999999999999999999865555567788889999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcc-cHHHHHHHHHcCCcE--EEEcccCCCCCCCCCCCHHHHH
Q 010547 138 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY-NASALEALLNAGVLG--LKSFMCPSGINDFPMTNASHIK 214 (507)
Q Consensus 138 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~l~ 214 (507)
.+.|.....+.+....+.++....+++..++++...... ...++.++...|+.+ ++.+ +.+..++..+.
T Consensus 79 -~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~g~~f~~~-------~~~~~~~~~l~ 150 (411)
T TIGR00857 79 -NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELKEAGAVGRMFTDD-------GSEVQDILSMR 150 (411)
T ss_pred -CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHHHCCcEEEEEEeC-------CcccCCHHHHH
Confidence 677777778888888888877778899888877654432 356677777789988 5542 23457889999
Q ss_pred HHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEe
Q 010547 215 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 294 (507)
Q Consensus 215 ~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h 294 (507)
++++.+++++.++.+|+|+...+...+.. .+......++..+|...|..++.+.+.+++.. +.++|+.|
T Consensus 151 ~~~~~a~~~g~~v~iH~E~~~l~~~~~~~----~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~-------~~~~~i~H 219 (411)
T TIGR00857 151 RALEYAAIAGVPIALHAEDPDLIYGGVMH----EGPSAAQLGLPARPPEAEEVAVARLLELAKHA-------GCPVHICH 219 (411)
T ss_pred HHHHHHHHcCCEEEEecCCHHHHhhhhhc----CCcccHhhCCCCCCHHHHHHHHHHHHHHHHHH-------CCCEEEEe
Confidence 99999999999999999998876544332 23334556778899999999999999999976 88999999
Q ss_pred cCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCCh
Q 010547 295 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 374 (507)
Q Consensus 295 ~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~ 374 (507)
+++. .+++.++.++++|+.+++++||||+.++.+.+...+..++++||+|...++..+++++.+|.+++++||+.|+..
T Consensus 220 vs~~-~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~ 298 (411)
T TIGR00857 220 ISTK-ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTL 298 (411)
T ss_pred CCCH-HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCh
Confidence 9998 999999999999999999999999999999888788999999999999999999999999999999999999987
Q ss_pred hhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEe
Q 010547 375 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 454 (507)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~ 454 (507)
..+. .+|+..+.|+.+++..++.++....+.+++++++++++|.|||+++|+++.|+|++|+.|||+++|.+..+.+
T Consensus 299 ~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~G~l~~G~~ADlvi~d~~~~~~~ 375 (411)
T TIGR00857 299 EEKT---KEFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADITVFDLKKEWTI 375 (411)
T ss_pred HHcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCCCCccCCCCcCCEEEEcCCCCEEE
Confidence 6653 3688999999999999999998777778999999999999999999995569999999999999999999888
Q ss_pred CCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 455 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
+.. .+.+... ++||.+....|.|..|+++|++||+|
T Consensus 376 ~~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 376 NAE-TFYSKAK-NTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred chH-HCccCCC-CCCcCCCEEEeEEEEEEECCEEEecC
Confidence 766 6677777 99999999999999999999999975
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=395.24 Aligned_cols=396 Identities=29% Similarity=0.436 Sum_probs=325.5
Q ss_pred EecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHh
Q 010547 48 TSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAA 127 (507)
Q Consensus 48 ~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~ 127 (507)
.+++|++.+++.+++|+|+||+|++|++. .. ++.++||++|++|+|||||+|+|+........+++.+..+.+++
T Consensus 2 ~~~~v~~~~~~~~~~i~i~~G~I~~i~~~-~~----~~~~~iD~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~ 76 (398)
T PRK04250 2 LEGKFLLKGRIVEGGIGIENGRISKISLR-DL----KGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIESGTKAALH 76 (398)
T ss_pred eeEEEEECCcEEEEEEEEECCEEEEeeCC-CC----CCCeEEECCCCEEccCEEeccccccCCCCCcHHHHHHHHHHHHh
Confidence 47889998888899999999999999741 11 15689999999999999999999976655566788899999999
Q ss_pred CCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 010547 128 GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 207 (507)
Q Consensus 128 ~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 207 (507)
+||||+++++ ++.|.....+.+....+.++...++++.+++ .... ..+++.++.. ..++.|+.... ..
T Consensus 77 gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~---~~~~l~~l~~---~~~k~f~~~~~----~~ 144 (398)
T PRK04250 77 GGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG---NCEKAEEIKA---DFYKIFMGAST----GG 144 (398)
T ss_pred CCeEEEEECC-CCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC---CHHHHHHHHh---hheEEEEecCC----Cc
Confidence 9999999999 8888889999999998888888899998887 4332 2333444432 24666653311 11
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCC
Q 010547 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (507)
Q Consensus 208 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g 287 (507)
...+.+... ..+.+..+.+|+|+...+. .+..+|...|..++.+.+.+++++ +
T Consensus 145 ~~~~~~~~~---~~~~~~~v~~H~E~~~~~~-----------------~~~~~p~~aE~~av~r~~~la~~~-------~ 197 (398)
T PRK04250 145 IFSENFEVD---YACAPGIVSVHAEDPELIR-----------------EFPERPPEAEVVAIERALEAGKKL-------K 197 (398)
T ss_pred hhHHHHHHH---HHhcCCeEEEEecChhhhh-----------------cccCCCHHHHHHHHHHHHHHHHHh-------C
Confidence 112222211 2233567999999876522 134679999999999999999977 8
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCC-EEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEe
Q 010547 288 AHLHIVHLSDASSSLDLLMEAKTNGDS-ITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (507)
Q Consensus 288 ~~~~~~h~~~~~~~~~~i~~~~~~g~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lg 366 (507)
.++|+.|+++. .+++.++. .|+. +++++||||+.++.+.+ ..++.++++||+|...+++.+++++.. +++++
T Consensus 198 ~~lhi~HvSt~-~~~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~-~~~~~~k~~PPLR~~~d~~aL~~~l~~--Id~i~ 270 (398)
T PRK04250 198 KPLHICHISTK-DGLKLILK---SNLPWVSFEVTPHHLFLTRKDY-ERNPLLKVYPPLRSEEDRKALWENFSK--IPIIA 270 (398)
T ss_pred CCEEEEeCCCH-HHHHHHHH---cCCCcEEEEeCHHHhccCHHHH-CCCCceEEcCCCCCHHHHHHHHHhhcc--CCEEE
Confidence 99999999998 88888854 4886 99999999999999988 578899999999999999999999964 88999
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEE
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVW 446 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvl 446 (507)
|||+|+...++. ..+.|+.|++..++.++....+.++|++++++++|.|||++||+++.| |++|++|||+++
T Consensus 271 sDHaP~~~~~k~-------~~~~G~~g~e~~lpl~~~~v~~~~lsl~~~v~~~t~npAk~lgl~~~G-L~~G~~ADlvi~ 342 (398)
T PRK04250 271 SDHAPHTLEDKE-------AGAAGIPGLETEVPLLLDAANKGMISLFDIVEKMHDNPARIFGIKNYG-IEEGNYANFAVF 342 (398)
T ss_pred cCCcccCHHHhh-------cCCCCcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCcC-ccCCCcCCEEEE
Confidence 999999877653 135799999999999998767778999999999999999999996679 999999999999
Q ss_pred cCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCccc
Q 010547 447 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504 (507)
Q Consensus 447 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~ 504 (507)
|++..|.++.. .+.++.. ++||.+..+.|.|..||++|++||++|++++..+|+++
T Consensus 343 D~~~~~~v~~~-~~~s~~~-~sp~~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~G~~~ 398 (398)
T PRK04250 343 DMKKEWTIKAE-ELYTKAG-WTPYEGFKLKGKVIMTILRGEVVMEDDEIIGKPRGVRI 398 (398)
T ss_pred cCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEcCCCCCeEC
Confidence 99999988877 6777777 99999999999999999999999999999887788764
|
|
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=361.64 Aligned_cols=361 Identities=34% Similarity=0.464 Sum_probs=311.7
Q ss_pred CCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc
Q 010547 93 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (507)
Q Consensus 93 g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (507)
|++|+||+||+|+|+..++....+++.+..+.++.+||||++++| ++.|.....+.+....+.++....+++.++++..
T Consensus 1 G~~vlPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~ 79 (361)
T cd01318 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVT 79 (361)
T ss_pred CCEEecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECC-CCCCCCCcHHHHHHHHHHhccCceeEEEEEEeec
Confidence 689999999999999988888899999999999999999999999 8889999999999998888888899999887754
Q ss_pred CCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
.. +.+.++.+.|..+++.|+.+... .. ..+...+.++++.++ .++.+|+|+.+.+.......+ .
T Consensus 80 ~~-----~~l~~~~~~~~~g~k~f~~~~~~-~~-~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~------~ 143 (361)
T cd01318 80 GS-----EDLEELDKAPPAGYKIFMGDSTG-DL-LDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELK------G 143 (361)
T ss_pred Ch-----hhHHHHHHhhCcEEEEEEecCCC-Cc-CCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhh------h
Confidence 43 34666666788899998743221 12 257788888887774 789999999887554433222 1
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~ 332 (507)
...++..+|...|..++.+.+.+++++ +.++|+.|+++. .+++.++.++ ..+++++||||+.++.+.+.
T Consensus 144 ~~~~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~Hvs~~-~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~ 212 (361)
T cd01318 144 ESAHPRIRDAEAAAVATARALKLARRH-------GARLHICHVSTP-EELKLIKKAK---PGVTVEVTPHHLFLDVEDYD 212 (361)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhC---CCeEEEeCHHHhhcCHHHHh
Confidence 125567899999999999999999976 899999999998 8999998876 57899999999999998887
Q ss_pred CCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCH
Q 010547 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 412 (507)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~ 412 (507)
..+..++++||+|...+++.+++++++|.+++++||+.|+....+. .+|+.++.|+.+++..++.++....+.++++
T Consensus 213 ~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~---~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l 289 (361)
T cd01318 213 RLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKR---KGYPAAPSGIPGVETALPLMLTLVNKGILSL 289 (361)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHcc---CChhhCCCCCccHHHHHHHHHHHHHcCCCCH
Confidence 7788999999999999999999999999999999999999877654 3688999999999999888887777778999
Q ss_pred HHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECC
Q 010547 413 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 486 (507)
Q Consensus 413 ~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G 486 (507)
+++++++|.|||+++|++++|+|++|+.|||+++|++..|.++.. .+.++.. ++||.|..+.|+|..||++|
T Consensus 290 ~~a~~~~t~nPA~~lgl~~~G~i~~G~~ADlvv~d~~~~~~v~~~-~~~s~~~-~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 290 SRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTIRAE-EFHSKAG-WTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred HHHHHHHhHHHHHHhCCCCCCccCCCCcCCEEEEeCCCCEEECHH-HccccCC-CCCCCCCEEeeEEEEEEeCc
Confidence 999999999999999996589999999999999999999999877 7778888 99999999999999999998
|
This group contains the archeal members of the DHOase family. |
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=359.69 Aligned_cols=373 Identities=28% Similarity=0.340 Sum_probs=302.2
Q ss_pred eeeEEEeCCEEEEeecCCCCCCCCCCCcEEec-CCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCC
Q 010547 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDY-GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL 138 (507)
Q Consensus 60 ~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~-~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~ 138 (507)
+..|.|++|+|..|++.. + .++++||+ +|++|+|||||+|+|+..++....+++.+..++++.+||||++++|
T Consensus 13 ~~~~~~~~~~~~~i~~~~--~---~~~~~id~~~G~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP- 86 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK--S---RCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP- 86 (392)
T ss_pred CceEEEeeeeeeeEeecc--C---CCCceeecCCCCEEeCCEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC-
Confidence 567788999998888752 2 26889999 6999999999999999998888899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHH
Q 010547 139 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 218 (507)
Q Consensus 139 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (507)
++.|.....+.+....+.++....+++.++++.... .+++ ...|+.+++.|.. + ... ...++
T Consensus 87 nt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el---~~~~~~g~k~f~~-----~--~~~----~~~~~ 148 (392)
T PRK00369 87 NTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKV---DKLPIAGYKIFPE-----D--LER----EETFR 148 (392)
T ss_pred CCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHH---HHhhCceEEEECC-----C--Cch----HHHHH
Confidence 888988999999999998888889999988755321 2233 3447778888731 1 112 22344
Q ss_pred HHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 010547 219 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 298 (507)
Q Consensus 219 ~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~ 298 (507)
.+.+++.++.+|+|+...+... ....+|...|..++.....+ .++|+.|+++.
T Consensus 149 ~~~~~~~~v~~HaE~~~l~~~~---------------~~~~rp~~aE~~ai~~~~~~------------~~lhi~HvSt~ 201 (392)
T PRK00369 149 VLLKSRKLKILHPEVPLALKSN---------------RKLRRNCWYEIAALYYVKDY------------QNVHITHASNP 201 (392)
T ss_pred HHHHhCCEEEEeCCCHHHhhcc---------------hhcccCHHHHHHHHHHHHHh------------CCEEEEECCCH
Confidence 4455569999999987664311 11236666676666555554 34999999997
Q ss_pred hHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhc
Q 010547 299 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378 (507)
Q Consensus 299 ~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~ 378 (507)
+.+ +.++++| +++++||||+.++.+ .+..++++||+|...+++.+++++.+ +++++|||+|+...++.
T Consensus 202 -~~v---~~ak~~g--vt~Ev~pHhL~l~~~----~~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~ 269 (392)
T PRK00369 202 -RTV---RLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKL 269 (392)
T ss_pred -HHH---HHHHHCC--CeEEechhHheeccC----CCCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHcc
Confidence 654 4456666 678999999999875 36679999999999999999999998 88999999999877763
Q ss_pred cccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCC
Q 010547 379 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 458 (507)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~ 458 (507)
.+|+.++.|+.|++..++.++....+.+++++++++++|.|||++||++ .|.|++|+.|||+++|++ .|.. .
T Consensus 270 ---~~f~~~~~Gi~GlE~~lpll~~~v~~~~lsl~~~v~~~s~nPA~ilgl~-~g~i~~G~~ADlvi~d~~-~~~~--~- 341 (392)
T PRK00369 270 ---QPYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELISTNPARILGIP-YGEIKEGYRANFTVIQFE-DWRY--S- 341 (392)
T ss_pred ---CCHhhCCCCCeeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC-CCccCCCCccCEEEEeCC-ceeE--c-
Confidence 3699999999999999999998777778999999999999999999995 488999999999999987 5554 3
Q ss_pred CcccCCCCCccccCcEEeeEEEEEEECCEEEEecCccc-CCCCCccc
Q 010547 459 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPI 504 (507)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~-~~~~~~~~ 504 (507)
...++.. ++||.|..+.|.|..||++|++||++|++. ....|++=
T Consensus 342 ~~~sk~~-~sp~~G~~l~G~v~~ti~~G~~v~~~~~~~~~~g~G~~~ 387 (392)
T PRK00369 342 TKYSKVI-ETPLDGFELKASVYATIVQGKLAYLEGEVFPVKGINPFG 387 (392)
T ss_pred cccccCC-CCCCCCCEeeeEEEEEEECCEEEEECCeEecCCCCCCCC
Confidence 5577888 999999999999999999999999999987 45566653
|
|
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=356.47 Aligned_cols=371 Identities=35% Similarity=0.502 Sum_probs=321.4
Q ss_pred CcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeE
Q 010547 86 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (507)
Q Consensus 86 ~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 165 (507)
.++||++|++|+||+||+|+|+..+.....+++.+..+.++.+||||+++++ ++.|.....+.+....+.+.....+++
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNRAKDVGIVRV 80 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHhccCCceeE
Confidence 5789999999999999999999988777788999999999999999999999 778888889999888888877777777
Q ss_pred EEeccccCCCcc-cHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcc
Q 010547 166 GFWGGLVPENAY-NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 244 (507)
Q Consensus 166 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~ 244 (507)
..++++...... ..+++.++.+.|+.+++.+ +.+..+...+.++++.+++.|.++.+|+|+.......++
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~-------~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~-- 151 (374)
T cd01317 81 LPIGALTKGLKGEELTEIGELLEAGAVGFSDD-------GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVM-- 151 (374)
T ss_pred EEEEEEeeCCCcccHHHHHHHHHCCcEEEEcC-------CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCc--
Confidence 777666544333 3778888888999999852 234568889999999999999999999998877554333
Q ss_pred cCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccc
Q 010547 245 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 324 (507)
Q Consensus 245 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~ 324 (507)
..+......++..+|...+...+.+.++++++. +.++|+.|+++. ..++.++.+++.|+.+.+++|+|++
T Consensus 152 --~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------~~~i~i~h~ss~-~~l~~i~~~~~~G~~~~~e~~~h~L 221 (374)
T cd01317 152 --NEGKVASRLGLPGIPPEAETIMVARDLELAEAT-------GARVHFQHLSTA-RSLELIRKAKAKGLPVTAEVTPHHL 221 (374)
T ss_pred --cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCEEEEecHHHH
Confidence 233334455667789988988999999999987 899999999998 9999999999999999999999999
Q ss_pred cccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH
Q 010547 325 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 404 (507)
Q Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 404 (507)
.++.+.+...++.++.+||+|...+++.+++++.+|+++++|||+++++...+.. +|+..+.|+.+++..++.++..
T Consensus 222 ~ld~~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~~~ 298 (374)
T cd01317 222 LLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLWTL 298 (374)
T ss_pred hcCHHHHhccCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHHHH
Confidence 9999998777888999999999999999999999999999999999988766543 5888999999999999999987
Q ss_pred HHhc-CCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEE
Q 010547 405 GRKY-GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 482 (507)
Q Consensus 405 ~~~~-gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 482 (507)
..+. .++++++++++|.|||+++|++ .|+|++|++|||+++|.+.+|.+... .+.++.. ++||.|..+.|.|..|
T Consensus 299 ~~~~~~~~~~~~~~~~t~npA~~lgl~-~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~s~~~-~sp~~G~~l~g~~~~t 374 (374)
T cd01317 299 LVKGGLLTLPDLIRALSTNPAKILGLP-PGRLEVGAPADLVLFDPDAEWIVDEE-TFRSKSK-NTPFDGQKLKGRVLAT 374 (374)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhCCC-CCcccCCCcCCEEEECCCCCEEEChh-hccccCC-CCCCCCCEEeEEEEEC
Confidence 6554 5899999999999999999995 49999999999999999999999888 7888888 9999999999998764
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=345.29 Aligned_cols=336 Identities=36% Similarity=0.601 Sum_probs=296.5
Q ss_pred CEEecceeecccccCCCCCC-CCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc
Q 010547 94 AVIMPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (507)
Q Consensus 94 ~~v~PGfID~H~H~~~~~~~-~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (507)
++|+||+||+|+|+..++.. ..+++.+..+.++.+||||++++| ++.|.....+.+....+.+....++++.++++..
T Consensus 1 ~~vlPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~ 79 (337)
T cd01302 1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG 79 (337)
T ss_pred CEecCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc
Confidence 47999999999999987766 788999999999999999999999 8888888899998888888888889998887665
Q ss_pred CCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
.. ...+++.++.+.|+.++|.|+.+... ..+..+++.+.+.++.+++.+.++.+|++
T Consensus 80 ~~--~~~~el~~l~~~Gv~g~K~f~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~v~~H~E-------------------- 136 (337)
T cd01302 80 PG--DVTDELKKLFDAGINSLKVFMNYYFG-ELFDVDDGTLMRTFLEIASRGGPVMVHAE-------------------- 136 (337)
T ss_pred Cc--cCHHHHHHHHHcCCcEEEEEEeccCC-CccccCHHHHHHHHHHHHhcCCeEEEeHH--------------------
Confidence 53 25677888888999999998754321 12356888999999999999999999993
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~ 332 (507)
+.+.++++. |.++|+.|+++. .+++.++.++++|+.+++++|||++.++.+.+.
T Consensus 137 ------------------r~~~la~~~-------g~~l~i~Hiss~-~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~ 190 (337)
T cd01302 137 ------------------RAAQLAEEA-------GANVHIAHVSSG-EALELIKFAKNKGVKVTCEVCPHHLFLDESMLR 190 (337)
T ss_pred ------------------HHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhh
Confidence 556666654 889999999998 999999999999999999999999999998887
Q ss_pred CCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCH
Q 010547 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 412 (507)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~ 412 (507)
..+..++.+||+|...+++.+++++.+|.+++++||+.|+....+... ++|+.++.|+.+++..++.++....+.++++
T Consensus 191 ~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~ 269 (337)
T cd01302 191 LNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVKRGLSL 269 (337)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHhcCCCH
Confidence 788899999999999999999999999999999999999987665432 3688999999999999999998888889999
Q ss_pred HHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEE
Q 010547 413 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 482 (507)
Q Consensus 413 ~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 482 (507)
+++++++|.|||+++|+++.|+|++|+.|||+++|++..|.+... .+.++.. ++||.|..+.|.|..|
T Consensus 270 ~~~~~~~s~~pA~~~gl~~~g~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t 337 (337)
T cd01302 270 ETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAE-EIESKAD-WTPFEGMEVTGKPVST 337 (337)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccccCCcCCEEEEeCCCcEEEcHH-HhcccCC-CCCcCCcEEEEEEEEC
Confidence 999999999999999995579999999999999999999999888 7888888 9999999999998764
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=348.94 Aligned_cols=393 Identities=21% Similarity=0.229 Sum_probs=285.7
Q ss_pred cceEEEEecEEECCCCc--eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChh
Q 010547 42 YNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~--~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~ 119 (507)
..+++|+|++|+|+++. ..++|.|+||+|++|++... .+.++||++|++|+|||||+|+|.....
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~-----~~~~viD~~g~~v~PG~ID~H~H~~~~~-------- 84 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI-----EGDRTIDATGLVVAPGFIDLHAHGQSVA-------- 84 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC-----CCCeEEeCCCCEEecCeEeeeeCCCCCc--------
Confidence 45789999999998764 35799999999999987532 2568999999999999999999976432
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHH-hcCceeeEEEecccc-------CC-----------------
Q 010547 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EKRIYVDVGFWGGLV-------PE----------------- 174 (507)
Q Consensus 120 ~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~----------------- 174 (507)
..+.++.+||||++++..+..|. ....+.. .....+++..+.+.. ..
T Consensus 85 -~~~~~~~~GvTtvv~~~~~~~p~-------~~~~~~~~~~~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 156 (509)
T PRK09061 85 -AYRMQAFDGVTTALELEAGVLPV-------ARWYAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDP 156 (509)
T ss_pred -cchhhccCCceeEEeeccCCCCH-------HHHHHHHHhcCCcceeehhcCcHHHHHHHhCCccccccccccccccccc
Confidence 24566889999999873122221 2222222 233346776655442 10
Q ss_pred --C-----cccHHHHHH----HHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhc
Q 010547 175 --N-----AYNASALEA----LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 243 (507)
Q Consensus 175 --~-----~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 243 (507)
. ++..+++.+ .++.|+.+++.+. .+.|..+.+++.++++.|++++.++..|+++....
T Consensus 157 ~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~~~-----~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~------ 225 (509)
T PRK09061 157 RWQERAATPAELAEILELLEQGLDEGALGIGIGA-----GYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNV------ 225 (509)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHCCCCEEecCC-----ccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccC------
Confidence 1 122233333 3458999998743 22345689999999999999999999999765420
Q ss_pred ccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC------hhHHHHHHHHHHhCCCCEEE
Q 010547 244 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASSSLDLLMEAKTNGDSITV 317 (507)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~------~~~~~~~i~~~~~~g~~i~~ 317 (507)
....+..++.+.++++++. |.++|+.|+++ . ..++.++.+++.|+.+++
T Consensus 226 -----------------~~~~e~~av~~~i~lA~~~-------G~rv~IsHlss~g~~~~~-~~le~I~~Ar~~Gi~Vt~ 280 (509)
T PRK09061 226 -----------------DPRSSVDAYQELIAAAAET-------GAHMHICHVNSTSLRDID-RCLALVEKAQAQGLDVTT 280 (509)
T ss_pred -----------------CchhHHHHHHHHHHHHHHh-------CCCEEEEeeccCCcccHH-HHHHHHHHHHHcCCcEEE
Confidence 1224667889999999976 88999999987 5 789999999999999999
Q ss_pred eccccc--------ccccccCCCCCCCce---eE---cCCCCC-------------------------hhhHHHHHHHHh
Q 010547 318 ETCPHY--------LAFSAEEIPDGDTRF---KC---APPIRD-------------------------AANKEKLWEALM 358 (507)
Q Consensus 318 ~~~~~~--------~~~~~~~~~~~~~~~---~~---~p~~~~-------------------------~~~~~~~~~~l~ 358 (507)
++|||+ +.++.+.+...+..+ +. .|++|+ ..+.+.+++.+.
T Consensus 281 e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 360 (509)
T PRK09061 281 EAYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVL 360 (509)
T ss_pred EecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhC
Confidence 999999 655444343334443 55 788877 444677888888
Q ss_pred cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhh------hHHHHHHHHH-Hhc-CCCHHHHHHHHhhchhHHhC--
Q 010547 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ------FVLPVTWSYG-RKY-GVTLEQLASWWSERPAKLAG-- 428 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~-~~~-gls~~~al~~~T~n~A~~lg-- 428 (507)
++.. +++||+.|+....+.. .|...+.+..+.+ ..++..+... ++. .+|++++++++|.+||++||
T Consensus 361 ~p~~-~i~sD~~p~~~~~~~~---~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~ 436 (509)
T PRK09061 361 FPGA-AIASDAMPWTWSDGTV---YEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDS 436 (509)
T ss_pred CCCc-eEecCCcccccccccc---ccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccc
Confidence 8877 9999999887665532 4555566665444 4455555543 343 59999999999999999999
Q ss_pred ---CCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcc-cCCCCCccc
Q 010547 429 ---QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH-APAACGSPI 504 (507)
Q Consensus 429 ---l~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~-~~~~~~~~~ 504 (507)
++++|+|++|+.|||+++|++...+.. . +.++ +.++. .|..||++|+++|++|++ ++..+||+|
T Consensus 437 ~~~l~~~G~i~~G~~ADlvv~D~~~~~~~~---~--~~~~-~~~~~------gi~~v~v~G~~v~~~g~~~~~~~~G~~l 504 (509)
T PRK09061 437 VPAMRRKGRLQAGADADIVVFDPETITDRA---T--FEDP-NRPSE------GVRHVLVNGVPVVSNGELVRDARPGRPV 504 (509)
T ss_pred cccccCCEeeCCCCCcCEEEEchhhccccc---c--cccc-CCCCC------CceEEEECCEEEEECCEecCCCCCCeEe
Confidence 855799999999999999988633221 1 1222 33333 389999999999999998 588999999
Q ss_pred ccC
Q 010547 505 LAT 507 (507)
Q Consensus 505 ~~~ 507 (507)
|.+
T Consensus 505 r~~ 507 (509)
T PRK09061 505 RRP 507 (509)
T ss_pred cCC
Confidence 864
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=341.84 Aligned_cols=359 Identities=23% Similarity=0.315 Sum_probs=264.6
Q ss_pred eEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 44 ~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
+++|+|++|+++++ ...++|.|+||+|++|++.... .+.++||++|++|+|||||+|+|+..+... ...
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~-----~~~ 71 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILST----SAREVIDAAGLVVAPGFIDVHTHYDGQVFW-----DPD 71 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCCC----CCCeEEECCCCEEccCEeeeeecCCccccc-----Ccc
Confidence 46899999999876 4578999999999999875431 256899999999999999999999875432 233
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCH------------------------HHHHHHHHHHhcC-ceeeEE---EeccccC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTIST------------------------ETLKLKVDAAEKR-IYVDVG---FWGGLVP 173 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~------------------------~~~~~~~~~~~~~-~~~~~~---~~~~~~~ 173 (507)
.+.++++||||++++++++.|..... +.+....+.+... ..+++. +++.+..
T Consensus 72 ~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~ 151 (415)
T cd01297 72 LRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRR 151 (415)
T ss_pred hhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHH
Confidence 67789999999999875444543332 4455666666444 477877 5544432
Q ss_pred ---------CCcccHHHHHHH----HHcCCcEEEEcccCCCCCCCC--CCCHHHHHHHHHHHHhcCCcEEEecCCcccch
Q 010547 174 ---------ENAYNASALEAL----LNAGVLGLKSFMCPSGINDFP--MTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (507)
Q Consensus 174 ---------~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 238 (507)
..+...+++.++ ++.|+.+++.++.+ .+ ..+++++.++++.+++++.++.+|+++...
T Consensus 152 ~~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y-----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~-- 224 (415)
T cd01297 152 AVMGLDAREATEEELAKMRELLREALEAGALGISTGLAY-----APRLYAGTAELVALARVAARYGGVYQTHVRYEGD-- 224 (415)
T ss_pred HHhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEccccc-----CCcccCCHHHHHHHHHHHHHcCCEEEEEECcccc--
Confidence 112233444444 57899999976533 23 578999999999999999999999976532
Q ss_pred hhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHH---------HHHHHHHH
Q 010547 239 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---------LDLLMEAK 309 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~---------~~~i~~~~ 309 (507)
.+..++.+.++++++. +.++|+.|+++. .. ++.+++++
T Consensus 225 -------------------------~e~~av~~~~~~a~~~-------g~r~~i~H~ss~-~~~~~~~~~~~l~~i~~a~ 271 (415)
T cd01297 225 -------------------------SILEALDELLRLGRET-------GRPVHISHLKSA-GAPNWGKIDRLLALIEAAR 271 (415)
T ss_pred -------------------------cHHHHHHHHHHHHHHh-------CCCEEEEEEecC-CCcccchHHHHHHHHHHHH
Confidence 4677889999999876 889999999986 66 89999999
Q ss_pred hCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCC
Q 010547 310 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 389 (507)
Q Consensus 310 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 389 (507)
..|+.+++++||+++.+ ...+.++++. .+++++||+.+.. .. +....
T Consensus 272 ~~G~~v~~e~~p~~~~~-----------------------~~~~~~l~~~-~~~~i~SDh~~~~-~~-------~~~~~- 318 (415)
T cd01297 272 AEGLQVTADVYPYGAGS-----------------------EDDVRRIMAH-PVVMGGSDGGALG-KP-------HPRSY- 318 (415)
T ss_pred HhCCcEEEEeCCCCCCc-----------------------HHHHHHHHcC-CCceeeeCCCcCC-CC-------Ccchh-
Confidence 99999999999976554 2233444544 8899999998864 10 11111
Q ss_pred CCchhhhHHHHHHHH-HHhc-CCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCC
Q 010547 390 GISSLQFVLPVTWSY-GRKY-GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467 (507)
Q Consensus 390 ~~~~~~~~l~~~~~~-~~~~-gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~ 467 (507)
.. ++.++.. ..+. .++++++++++|.|||++||++++|+|++|++||||++|++.....+. +
T Consensus 319 --~~----~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~ 382 (415)
T cd01297 319 --GD----FTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPDTLADRAT----------F 382 (415)
T ss_pred --CC----HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCCCCceeCCCCCCCEEEEcccccccccc----------h
Confidence 11 3334433 3333 499999999999999999999657999999999999999886443321 1
Q ss_pred ccccCcEEeeEEEEEEECCEEEEecCcccCCCCCc
Q 010547 468 SAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGS 502 (507)
Q Consensus 468 ~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~ 502 (507)
..+. .....|..|||+|++||++|++++..+|+
T Consensus 383 ~~~~--~~~~~v~~viv~G~~v~~~~~~~~~~~G~ 415 (415)
T cd01297 383 TRPN--QPAEGIEAVLVNGVPVVRDGAFTGARPGR 415 (415)
T ss_pred hhhc--cCCCCceEEEECCEEEEECCEECCCCCCC
Confidence 1111 11136999999999999999999988886
|
|
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=311.06 Aligned_cols=338 Identities=28% Similarity=0.462 Sum_probs=276.1
Q ss_pred CEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccC
Q 010547 94 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (507)
Q Consensus 94 ~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (507)
.+|+||+||.|+|+..++...++++.+..++++++||||+.++| ++.|.....+.+....+.++....+++.++++...
T Consensus 2 ~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmP-nt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~ 80 (344)
T cd01316 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATS 80 (344)
T ss_pred eEEeCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECC-CCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecC
Confidence 47999999999999998888899999999999999999999999 88888889999999999888888999998876655
Q ss_pred CCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcccc
Q 010547 174 ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253 (507)
Q Consensus 174 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 253 (507)
... +.+.++.. ...+++.|+.+.. .... .++.........+...+.++..|++.
T Consensus 81 ~~~---~~~~~l~~-~~~g~k~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~e~-------------------- 134 (344)
T cd01316 81 TNA---ATVGELAS-EAVGLKFYLNETF-STLI-LDKITAWASHFNAWPSTKPIVTHAKS-------------------- 134 (344)
T ss_pred CCH---HHHHHHHh-ccCeEEEEECCCC-CCCc-cchHHHHHHHHHhcccCCCeEEehhh--------------------
Confidence 443 23333332 2568888764311 1111 12222222223333446777777743
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC
Q 010547 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333 (507)
Q Consensus 254 ~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~ 333 (507)
..+.+.+.+++.+ |.++|+.|+++. ++++.++.+++.|+.+++++||||+.++.+++..
T Consensus 135 -------------~~~~~~l~la~~~-------g~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~ 193 (344)
T cd01316 135 -------------QTLAAVLLLASLH-------NRSIHICHVSSK-EEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR 193 (344)
T ss_pred -------------HHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc
Confidence 3456778888866 889999999999 9999999999999999999999999999988755
Q ss_pred CCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHH
Q 010547 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE 413 (507)
Q Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~ 413 (507)
..++.+||+|...+++.+++++. .+++++|||+|+....+. +. .++.|+.|++..++.++..+.+.+++++
T Consensus 194 --~~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~---~~--~a~~G~~g~e~~lpl~~~~v~~~~i~l~ 264 (344)
T cd01316 194 --GQYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKT---GN--KPPPGFPGVETSLPLLLTAVHEGRLTIE 264 (344)
T ss_pred --CCceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhc---CC--CCCCCcccHHHHHHHHHHHHHcCCCCHH
Confidence 57899999999999999999995 488999999999876653 12 6678999999999999986666689999
Q ss_pred HHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecC
Q 010547 414 QLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493 (507)
Q Consensus 414 ~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g 493 (507)
+++++.+.|||+.||++. + ++||+++|++..|.++.. .+.++.. ++||.|..+.|.|..|+++|++||++|
T Consensus 265 ~l~~~~s~nPAk~~gl~~------~-~~~lvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~ti~rG~~v~~~g 335 (344)
T cd01316 265 DIVDRLHTNPKRIFNLPP------Q-SDTYVEVDLDEEWTIPKN-PLQSKKG-WTPFEGKKVKGKVQRVVLRGETAFIDG 335 (344)
T ss_pred HHHHHHHHhHHHHhCCCC------C-CCCEEEEeCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECC
Confidence 999999999999999832 2 447999999999999877 7888888 999999999999999999999999999
Q ss_pred cccC
Q 010547 494 NHAP 497 (507)
Q Consensus 494 ~~~~ 497 (507)
++..
T Consensus 336 ~~~~ 339 (344)
T cd01316 336 EIVA 339 (344)
T ss_pred EEcc
Confidence 8864
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=306.63 Aligned_cols=360 Identities=24% Similarity=0.323 Sum_probs=251.1
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCC----CC-CCCC--
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD----PG-RTEW-- 115 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~----~~-~~~~-- 115 (507)
++++|+|++|+++++..+++|.|+||||++|++... + ..++||++|++|+|||||+|+|... +. ...|
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-~----~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~ 76 (383)
T PRK15446 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS-A----LPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPA 76 (383)
T ss_pred ccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC-C----CCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccch
Confidence 568999999999888779999999999999997543 1 3578999999999999999996542 21 1122
Q ss_pred -CChhHHHHHHHhCCceEEEeCCCCC-CCC-CC-CH---HHHHHHHH--HHhcCceeeEEEeccccCCCcccHHHHHHHH
Q 010547 116 -EGFPSGTKAAAAGGITTLIDMPLNS-DPS-TI-ST---ETLKLKVD--AAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (507)
Q Consensus 116 -~~~~~~~~~~l~~GvTt~~~~~~~~-~p~-~~-~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (507)
+++....++++++||||++++...+ .|. .. .. ..+....+ ....+..+++.+|+++....+...+++.++.
T Consensus 77 ~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~ 156 (383)
T PRK15446 77 DAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALL 156 (383)
T ss_pred HHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHh
Confidence 6788889999999999999974222 231 11 12 13334444 3446788999999999877777788999999
Q ss_pred HcCCcEEEEcccCC-CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHH
Q 010547 187 NAGVLGLKSFMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (507)
Q Consensus 187 ~~g~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (507)
+.|..++|.|+++. +....+ ..+.+.... +++.| .+|+|....+.... ..|...+
T Consensus 157 ~~g~~~~k~fm~~~p~~~~~~--~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~-----------------~~~~~~~ 212 (383)
T PRK15446 157 AHPRVDLVSLMDHTPGQRQFR--DLEKYREYY--AGKYG---LSDEEFDAFVEERI-----------------ALSARYA 212 (383)
T ss_pred cCCCcCEEEEeCCCCcccccc--CHHHHHHHH--HhhcC---CCHHHHHHHHHHHH-----------------HhHhhcC
Confidence 99999999998775 322222 333444444 44666 67888766533211 1244556
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCcee-EcC-C
Q 010547 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK-CAP-P 343 (507)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~ 343 (507)
.+.+....+.+++. |.++ ..|.... .+.++.+++.|+.+... +...... ......+.... ..| +
T Consensus 213 ~e~i~~~v~~A~~~-------g~~v-~sH~~~~---~~~i~~a~~~Gv~~~e~--~~~~e~~-~~~~~~g~~v~~~~p~~ 278 (383)
T PRK15446 213 PPNRRAIAALARAR-------GIPL-ASHDDDT---PEHVAEAHALGVAIAEF--PTTLEAA-RAARALGMSVLMGAPNV 278 (383)
T ss_pred HHHHHHHHHHHHHC-------CCce-eecCCCC---HHHHHHHHHcCCceeeC--CCcHHHH-HHHHHCCCEEEeCCccc
Confidence 77899999999976 7766 6776322 23577777888876531 1111000 01111222222 223 2
Q ss_pred CCC--hhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhh
Q 010547 344 IRD--AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 421 (507)
Q Consensus 344 ~~~--~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~ 421 (507)
+|. ......+++++.+|++++++||+.+... +...+......+++++++++++|.
T Consensus 279 ~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~~~-----------------------~~~~~~~~~~~gls~~~al~~~T~ 335 (383)
T PRK15446 279 VRGGSHSGNVSALDLAAAGLLDILSSDYYPASL-----------------------LDAAFRLADDGGLDLPQAVALVTA 335 (383)
T ss_pred ccCCcccchHhHHHHHHCCCcEEEEcCCChhhH-----------------------HHHHHHHHHhcCCCHHHHHHHHhH
Confidence 443 3456778899999999999999865421 223344456678999999999999
Q ss_pred chhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 422 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 422 n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
|||+++|+++.|+|++|+.|||+++|.++. .. .+..||++|++||+.
T Consensus 336 npA~~lgl~~~G~I~~G~~ADlvv~d~~~~------------~~------------~v~~v~~~G~~v~~~ 382 (383)
T PRK15446 336 NPARAAGLDDRGEIAPGKRADLVRVRRAGG------------LP------------VVRAVWRGGRRVFLA 382 (383)
T ss_pred HHHHHcCCCCCcCcCCCCcCCEEEEcCCCC------------Cc------------chheEEECCEEEEeC
Confidence 999999995569999999999999997620 01 578899999999864
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=298.23 Aligned_cols=355 Identities=25% Similarity=0.330 Sum_probs=254.8
Q ss_pred EEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCC------CCCCCC---C
Q 010547 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD------PGRTEW---E 116 (507)
Q Consensus 46 ~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~------~~~~~~---~ 116 (507)
+|+|++|+++++...++|.|+||+|++|++... . ..++||++|++|+|||||+|+|... ++. .| +
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~-~----~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~-~~~~~~ 74 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV-A----LAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGV-DWPIDA 74 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC-C----CCceEeCCCCEEeccEEEcccCccccCcCCCCCC-CcchHH
Confidence 489999999998777899999999999987432 1 4568999999999999999999876 333 45 5
Q ss_pred ChhHHHHHHHhCCceEEEeCCCCC--CCCCCCHHHHHHHH---HHHhcC--ceeeEEEeccccCCCcccHHHHHHHHHcC
Q 010547 117 GFPSGTKAAAAGGITTLIDMPLNS--DPSTISTETLKLKV---DAAEKR--IYVDVGFWGGLVPENAYNASALEALLNAG 189 (507)
Q Consensus 117 ~~~~~~~~~l~~GvTt~~~~~~~~--~p~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (507)
.+....+.++.+||||+++++..+ .|.....+.+.... +++..+ ..+++.+|+++....+...++++.+.+.|
T Consensus 75 ~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~~~g 154 (376)
T TIGR02318 75 AIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELIDDP 154 (376)
T ss_pred HHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHhcCC
Confidence 677888899999999999997433 45556677777766 555645 78899999999777777788999999999
Q ss_pred CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHH
Q 010547 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (507)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 269 (507)
..+++.|+++.+ ...+..+++.+.+.... +.| .+|+|....+.......+ ....+.+
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~~-----------------~~~~e~i 211 (376)
T TIGR02318 155 RVDLISLMDHTP-GQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIARRA-----------------EYGLANR 211 (376)
T ss_pred CcCEEEEeCCCC-CcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHHHh-----------------hccHHHH
Confidence 999999998765 33456677666666543 555 678887665443222211 0125678
Q ss_pred HHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCc-eeEcC-CCCCh
Q 010547 270 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR-FKCAP-PIRDA 347 (507)
Q Consensus 270 ~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~~~~~ 347 (507)
....+++++. |.++ ..|... ..+.++.+++.|+.+... +-.... ...+...+.. .+..| +++..
T Consensus 212 ~~~v~~A~~~-------G~~v-~sH~~~---~~e~i~~a~~~Gv~~~E~--~~t~e~-a~~~~~~G~~v~~~~p~~~r~~ 277 (376)
T TIGR02318 212 SEIAALARAR-------GIPL-ASHDDD---TPEHVAEAHDLGVTISEF--PTTLEA-AKEARSLGMQILMGAPNIVRGG 277 (376)
T ss_pred HHHHHHHHHC-------CCeE-EEecCC---CHHHHHHHHHCCCChhcc--CCCHHH-HHHHHHcCCeEEECCccccccc
Confidence 8888888876 7776 677642 234577777778744321 100000 1111222333 33344 34544
Q ss_pred hh--HHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchh
Q 010547 348 AN--KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPA 424 (507)
Q Consensus 348 ~~--~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A 424 (507)
.. ...+++++.+|++++++||+.+... +...+.... ..+++++++++++|.|||
T Consensus 278 ~~~~~~~l~~~~~~G~~~~l~SD~~p~~~-----------------------l~~~~~~~~~~~gl~~~~al~~~T~npA 334 (376)
T TIGR02318 278 SHSGNLSARELAHEGLLDVLASDYVPASL-----------------------LLAAFQLADDVEGIPLPQAVKMVTKNPA 334 (376)
T ss_pred cccchHHHHHHHHCCCcEEEEcCCCcHHH-----------------------HHHHHHHHHhhcCCCHHHHHHHHhHHHH
Confidence 33 6778999999999999999975421 222333333 347999999999999999
Q ss_pred HHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEE
Q 010547 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490 (507)
Q Consensus 425 ~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~ 490 (507)
+++|++++|+|++|++|||+++|.... .+ .|..||++|++||
T Consensus 335 ~~lgl~~~G~I~~G~~ADlvvvd~~~~------------~~------------~v~~v~~~G~~v~ 376 (376)
T TIGR02318 335 RAVGLSDRGSIAPGKRADLVRVHRVDG------------VP------------RIRAVWRAGRRVY 376 (376)
T ss_pred HHcCCCCCCcCCCCCcccEEEEcCCCC------------Cc------------cceEEEECCEEeC
Confidence 999997689999999999999996420 11 6889999999986
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=298.24 Aligned_cols=373 Identities=18% Similarity=0.202 Sum_probs=220.8
Q ss_pred EEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---C---
Q 010547 45 YWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---E--- 114 (507)
Q Consensus 45 ~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---~--- 114 (507)
.+|+|++|+++++ +.+++|+|+||+|++||+..+... +...++||++|++|+|||||+|+|+...... .
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~-~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~ 80 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFL-EQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSN 80 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccc-cccCeEEeCCCCEEccceeeeccCCCccccccccCCCC
Confidence 5899999999876 347899999999999998654321 1246899999999999999999999765322 0
Q ss_pred -----------CCC------h----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccC
Q 010547 115 -----------WEG------F----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (507)
Q Consensus 115 -----------~~~------~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (507)
.+. . ...+.+++++||||+.++. +..+ .......+.......+.............
T Consensus 81 ~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~-~~~~--~~~~~~~~a~~~~Gir~~~~~~~~~~~~~ 157 (419)
T PRK06687 81 LHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMY-NPNG--VDIQQIYQVVKTSKMRCYFSPTLFSSETE 157 (419)
T ss_pred HHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhh-cccc--ccHHHHHHHHHHhCCceEeccccccCCcc
Confidence 000 1 1234567999999999875 2211 12222222222222222111111111111
Q ss_pred CCcccHH----HHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCcC
Q 010547 174 ENAYNAS----ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTL 248 (507)
Q Consensus 174 ~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~~ 248 (507)
......+ .++++...+...++..+.+ .....++++.++++.+.|++++.++.+|+.+... ........+
T Consensus 158 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~---~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g--- 231 (419)
T PRK06687 158 TTAETISRTRSIIDEILKYKNPNFKVMVAP---HSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYG--- 231 (419)
T ss_pred cHHHHHHHHHHHHHHHhccCCCceEEEEeC---CCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHC---
Confidence 1111122 2333333333335554443 3345789999999999999999999999865432 111000000
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccc
Q 010547 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (507)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~ 328 (507)
....+...+.+ ..+.+..+.|+... ..+.++.+++.|+.+.. ||..-
T Consensus 232 ---------------------~~~~~~l~~~g----~l~~~~~~~H~~~~--~~~~~~~la~~g~~v~~--~P~sn---- 278 (419)
T PRK06687 232 ---------------------KRPLAFLEELG----YLDHPSVFAHGVEL--NEREIERLASSQVAIAH--NPISN---- 278 (419)
T ss_pred ---------------------cCHHHHHHHcC----CCCCCeEEEEEecC--CHHHHHHHHHcCCeEEE--CcHHh----
Confidence 00111122211 11455677777763 34466777788876543 66311
Q ss_pred cCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhH-HHHHHHHHH-
Q 010547 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR- 406 (507)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~- 406 (507)
.. ......++.++++.|+++++|||..+++...++ ++.. +........
T Consensus 279 --~~-------------l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 328 (419)
T PRK06687 279 --LK-------------LASGIAPIIQLQKAGVAVGIATDSVASNNNLDM---------------FEEGRTAALLQKMKS 328 (419)
T ss_pred --hh-------------hccCCCcHHHHHHCCCeEEEeCCCCCCCCChhH---------------HHHHHHHHHHhcccc
Confidence 00 001122456788899999999997543322111 1110 111111111
Q ss_pred --hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe---eEEE
Q 010547 407 --KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVL 480 (507)
Q Consensus 407 --~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~ 480 (507)
...++++++++++|.|||+++|+ +++|+|++||.|||+++|.+....+. + . .+|+..+... ..|.
T Consensus 329 ~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~---p-----~-~~~~~~lv~~~~~~~v~ 399 (419)
T PRK06687 329 GDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQ---P-----Q-ENMLSHLVYAVKSSDVD 399 (419)
T ss_pred CCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcC---C-----c-cCHHHHhheeCCCCCcc
Confidence 12489999999999999999999 56899999999999999976321111 1 1 3333333332 3699
Q ss_pred EEEECCEEEEecCcccCCC
Q 010547 481 ATISRGNLVYKEGNHAPAA 499 (507)
Q Consensus 481 ~v~v~G~~v~~~g~~~~~~ 499 (507)
.|||+|++|+++|+++..+
T Consensus 400 ~v~v~G~~v~~~g~~~~~d 418 (419)
T PRK06687 400 DVYIAGEQVVKQGQVLTVE 418 (419)
T ss_pred EEEECCEEEEECCeEecCC
Confidence 9999999999999998765
|
|
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=296.05 Aligned_cols=379 Identities=14% Similarity=0.141 Sum_probs=223.0
Q ss_pred eEEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC------
Q 010547 44 QYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------ 113 (507)
Q Consensus 44 ~~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~------ 113 (507)
+++|+|++|++.+. +.+++|+|+||+|++||+..... .++++++||++|++|+|||||+|+|+......
T Consensus 2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~-~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~ 80 (435)
T PRK15493 2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFAS-DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDM 80 (435)
T ss_pred eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccc-cCCCCeEEeCCCCEEccceeecccCccchhhhccCCCC
Confidence 57999999998764 35889999999999999853222 22367899999999999999999999643111
Q ss_pred ---CCC--C----------------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec-cc
Q 010547 114 ---EWE--G----------------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-GL 171 (507)
Q Consensus 114 ---~~~--~----------------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 171 (507)
.|- . ....+.+++++||||+.|+. .. .....+.+.+..+....+..+....+. +.
T Consensus 81 ~l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~--~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~ 157 (435)
T PRK15493 81 LLQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMF-NP--IGVDQDAIMETVSRSGMRAAVSRTLFSFGT 157 (435)
T ss_pred CHHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccc-cc--cccCHHHHHHHHHHcCCcEEEeeeecCCCC
Confidence 110 0 01234567999999999874 21 111223333333322223222211111 00
Q ss_pred cCCCcccHHHHHHHHHc--C-CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCc
Q 010547 172 VPENAYNASALEALLNA--G-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDT 247 (507)
Q Consensus 172 ~~~~~~~~~~~~~~~~~--g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~ 247 (507)
........++...+.+. + ...++..+.+ .....++++.++++.+.|++++.++.+|+.+... +.......+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g-- 232 (435)
T PRK15493 158 KEDEKKAIEEAEKYVKRYYNESGMLTTMVAP---HSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYG-- 232 (435)
T ss_pred CccHHHHHHHHHHHHHHhcCCCCCeEEEEeC---CCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC--
Confidence 01111112222222221 1 1123333322 3334589999999999999999999999854322 100000000
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccc
Q 010547 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 327 (507)
Q Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~ 327 (507)
....+.+.+.+ ..+.+..+.|+..- +.+.++.+++.|+.+. +||..-..
T Consensus 233 ----------------------~~~~~~l~~~G----ll~~~~~~~H~~~l--~~~d~~~la~~g~~v~--~~P~sn~~- 281 (435)
T PRK15493 233 ----------------------KRPVEYAASCG----LFKRPTVIAHGVVL--NDNERAFLAEHDVRVA--HNPNSNLK- 281 (435)
T ss_pred ----------------------CCHHHHHHHcC----CCCCCcEEEEeecC--CHHHHHHHHHcCCeEE--EChHHHHH-
Confidence 00112222221 11455667777652 3345566677787654 46642100
Q ss_pred ccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-
Q 010547 328 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR- 406 (507)
Q Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 406 (507)
......++.++++.|+.+++|||+.+.+...++.. +..+..+.....
T Consensus 282 ------------------l~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~--------------~~~~a~~~~~~~~ 329 (435)
T PRK15493 282 ------------------LGSGIANVKAMLEAGIKVGIATDSVASNNNLDMFE--------------EMRIATLLQKGIH 329 (435)
T ss_pred ------------------HhcCcccHHHHHHCCCeEEEccCccccCCCcCHHH--------------HHHHHHHHHhhcc
Confidence 01123355678899999999999754322111100 111111222111
Q ss_pred --hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe---eEEEE
Q 010547 407 --KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLA 481 (507)
Q Consensus 407 --~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~ 481 (507)
...++++++++++|.|||+++|+++.|+|++||.|||+++|.+....+.+ . .+++..+... ..|..
T Consensus 330 ~~~~~~~~~~~l~~aT~~gA~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~~p--------~-~d~~~~lv~~~~~~~V~~ 400 (435)
T PRK15493 330 QDATALPVETALTLATKGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQP--------A-DEVLSHLVYAASGKDISD 400 (435)
T ss_pred CCCCcCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCCCCcCC--------c-cChHHhEEEeCCCCCccE
Confidence 23689999999999999999999668999999999999999754222211 1 3344444443 35999
Q ss_pred EEECCEEEEecCcccCCCCCcc
Q 010547 482 TISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 482 v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
|||+||+|++||+++..+..+.
T Consensus 401 v~V~G~~v~~~g~~~~~d~~~~ 422 (435)
T PRK15493 401 VIINGKRVVWNGECKTLDEERI 422 (435)
T ss_pred EEECCEEEEECCeECCCCHHHH
Confidence 9999999999999998776553
|
|
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=279.88 Aligned_cols=351 Identities=21% Similarity=0.276 Sum_probs=226.8
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCC---------CCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~---------~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
..+++|+|++|++..++.+++|.|+||||++|++...+... ..+.++||++|++|+|||||+|+|+..+..
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P~~ 143 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQ 143 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCccH
Confidence 56899999999998777889999999999999985432100 126789999999999999999999865432
Q ss_pred CCCCChhHHHHHHHhCCceEEEeCCC----CCCCCCCC--HHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH
Q 010547 113 TEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (507)
Q Consensus 113 ~~~~~~~~~~~~~l~~GvTt~~~~~~----~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (507)
...++++||||+++++. ++.|.... ...+....+.++.. .+++.+++.. .....+++.++.
T Consensus 144 ---------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~-pvn~gf~gkG---~~~~l~eL~el~ 210 (568)
T PRK13985 144 ---------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEY-SMNLGFLGKG---NSSNDASLADQI 210 (568)
T ss_pred ---------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhcc-CccEEEecCC---ccCCHHHHHHHH
Confidence 24689999999999521 33333323 22345555555533 4777766532 223467888889
Q ss_pred HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHH
Q 010547 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (507)
Q Consensus 187 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (507)
+.|+.+++.+. .+..++..+.++++.|++++.++.+|++.... .
T Consensus 211 ~aGA~GfK~~e-------d~g~t~~~I~~aL~vA~~~dv~V~iHtdtlne-----------------------------~ 254 (568)
T PRK13985 211 EAGAIGFKIHE-------DWGTTPSAINHALDVADKYDVQVAIHTDTLNE-----------------------------A 254 (568)
T ss_pred HcCCEEEEECC-------ccCCCHHHHHHHHHHHHHcCCEEEEeCCCCCC-----------------------------c
Confidence 99999999742 23578899999999999999999999976542 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCC
Q 010547 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344 (507)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 344 (507)
..++..+..+. |..+|..|...+. ...+.++.+...++..+ .+.| ...++.+.+...-...+.+..+
T Consensus 255 g~~E~t~aa~~---------gr~iH~~H~egaggghapdi~~~~~~~nvlp~-stnp-t~p~t~nt~~e~~dm~m~~h~l 323 (568)
T PRK13985 255 GCVEDTMAAIA---------GRTMHTFHTEGAGGGHAPDIIKVAGEHNILPA-STNP-TIPFTVNTEAEHMDMLMVCHHL 323 (568)
T ss_pred hhhHHHHHHhc---------CCeEEEEeccCCCccchhhHHHHcCCCCcccC-CCCC-CCCCccCchhhhcCeEEeecCC
Confidence 12334444444 8889999998641 23444444433333211 1122 2333334443332233333222
Q ss_pred CC--hhhH---------HHH--HH-HHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh---
Q 010547 345 RD--AANK---------EKL--WE-ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--- 407 (507)
Q Consensus 345 ~~--~~~~---------~~~--~~-~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 407 (507)
.. +++. +.+ -. +-..|+...+.||..+-- .++-+-.++-+...+..+
T Consensus 324 ~~~~~ed~afa~srir~~tiaaed~l~d~G~~s~~~SDs~~mg----------------r~ge~~~r~~q~a~k~~~~~g 387 (568)
T PRK13985 324 DKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMG----------------RVGEVITRTWQTADKNKKEFG 387 (568)
T ss_pred CCCCcchhhhhhhhccccccccCchhhhCCcEEEEeccchhhC----------------cccceeeehHHHHHHHHHhcC
Confidence 10 1111 111 01 223489999999965211 111111111111111111
Q ss_pred ---------cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee
Q 010547 408 ---------YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477 (507)
Q Consensus 408 ---------~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (507)
-.+++++++++.|.|||+++|+ +++|+|++||.||||+||.+... .
T Consensus 388 ~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f~----------~-------------- 443 (568)
T PRK13985 388 RLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFG----------V-------------- 443 (568)
T ss_pred CCCCccccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccCC----------C--------------
Confidence 2377889999999999999999 78999999999999999966311 0
Q ss_pred EEEEEEECCEEEEec
Q 010547 478 KVLATISRGNLVYKE 492 (507)
Q Consensus 478 ~V~~v~v~G~~v~~~ 492 (507)
.+..||++|+++|..
T Consensus 444 ~pe~vi~~G~iv~~~ 458 (568)
T PRK13985 444 KPNMIIKGGFIALSQ 458 (568)
T ss_pred ChheEEECCEEEEcc
Confidence 367999999999976
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=296.15 Aligned_cols=377 Identities=18% Similarity=0.184 Sum_probs=219.6
Q ss_pred ceEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---CC-
Q 010547 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EW- 115 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---~~- 115 (507)
++++|+|++|+++++ +.+++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+...... ..
T Consensus 1 ~~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~---~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~ 77 (445)
T PRK07228 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLE---DYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDL 77 (445)
T ss_pred CeEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccC---cCCeEEeCCCCEEecCEEecccCCccccceeccCCC
Confidence 358999999999874 56899999999999999865432 157899999999999999999999753211 00
Q ss_pred C-------------------C----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe-ccc
Q 010547 116 E-------------------G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW-GGL 171 (507)
Q Consensus 116 ~-------------------~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 171 (507)
. . ......+++++||||++++. +.. .....++...+ ...+........ .+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~-~~~---~~~~~~~a~~~-~g~r~~~~~~~~~~~~ 152 (445)
T PRK07228 78 ELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDME-SVH---HTDSAFEAAGE-SGIRAVLGKVMMDYGD 152 (445)
T ss_pred CHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccc-ccc---ChHHHHHHHHH-cCCeEEEecceecCCc
Confidence 0 0 01223456799999999985 111 11122211111 111111111110 000
Q ss_pred -cCC-----CcccHHHHHHHHHc--CCc--EEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhh
Q 010547 172 -VPE-----NAYNASALEALLNA--GVL--GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERH 240 (507)
Q Consensus 172 -~~~-----~~~~~~~~~~~~~~--g~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~ 240 (507)
.+. ..+..+...++.+. |.. .+...+.+ .....++++.++++++.|++++.++.+|+.+... ....
T Consensus 153 ~~p~~~~~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~ 229 (445)
T PRK07228 153 DVPEGLQEDTEASLAESVRLLEKWHGADNGRIRYAFTP---RFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETV 229 (445)
T ss_pred CCCccccccHHHHHHHHHHHHHHhcCCCCCceEEEEeC---CCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHH
Confidence 000 01112222233221 322 22211111 2234578999999999999999999999943221 1100
Q ss_pred hhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecc
Q 010547 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 320 (507)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~ 320 (507)
....+ ...++...+.+ ..+.++.+.|+... ..+.++.+++.|+.+. +|
T Consensus 230 ~~~~g------------------------~~~~~~l~~~g----~~~~~~~l~H~~~~--~~~~~~~~~~~g~~v~--~~ 277 (445)
T PRK07228 230 EEETG------------------------MRNIHYLDEVG----LTGEDLILAHCVWL--DEEEREILAETGTHVT--HC 277 (445)
T ss_pred HHHhC------------------------CCHHHHHHHCC----CCCCCcEEEEEecC--CHHHHHHHHHcCCeEE--EC
Confidence 00000 00111112111 11556788888752 2334566677787654 46
Q ss_pred cccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHH
Q 010547 321 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPV 400 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 400 (507)
|..- +. ......++.++++.|+++++|||+.+.....+. | .+..+..
T Consensus 278 P~~~------~~-------------~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~-----~---------~~~~~~~ 324 (445)
T PRK07228 278 PSSN------LK-------------LASGIAPVPDLLERGINVALGADGAPCNNTLDP-----F---------TEMRQAA 324 (445)
T ss_pred hHHh------hh-------------cccccCcHHHHHHCCCeEEEcCCCCccCCCccH-----H---------HHHHHHH
Confidence 6421 00 011234667889999999999998654321111 0 0111111
Q ss_pred HHHHHH---hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCc---
Q 010547 401 TWSYGR---KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR--- 473 (507)
Q Consensus 401 ~~~~~~---~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~--- 473 (507)
.+.... ...++++++++++|.|||+++|+ +++|+|++|+.|||+++|.+.....+.. . .+++..+
T Consensus 325 ~~~~~~~~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~----~----~~~~~~~~~~ 396 (445)
T PRK07228 325 LIQKVDRLGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSH----G----VDVLSHLVYA 396 (445)
T ss_pred HHhhhccCCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCc----c----cCHHHHhhee
Confidence 111111 13589999999999999999999 6789999999999999998864332211 0 1222211
Q ss_pred EEeeEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 474 RLSGKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 474 ~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
.....|..|||+|++||++|+++..+++..
T Consensus 397 ~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~ 426 (445)
T PRK07228 397 AHGSDVETTMVDGKIVMEDGELTTIDADAV 426 (445)
T ss_pred CCCCCeeEEEECCEEEEECCeEccCCHHHH
Confidence 112469999999999999999987765543
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=274.67 Aligned_cols=345 Identities=21% Similarity=0.274 Sum_probs=224.6
Q ss_pred cceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChh
Q 010547 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~ 119 (507)
+.+++|+|++|+++.. ...++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+..++.. ...
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~~----~~~~viD~~g~~v~PGliD~H~H~~~~g~~---~~~ 74 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPVA----SETRIIHADGCIVTPGLIDYHAHVFYDGTE---GGV 74 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCCC----CCCeEEECCCCEEECCEEEeeecCCCCCcc---ccc
Confidence 3568999999998763 4567899999999999875322 246899999999999999999999654422 223
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh---cCceeeEEEeccccCC-C---c---ccHHHHHHHHH--
Q 010547 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPE-N---A---YNASALEALLN-- 187 (507)
Q Consensus 120 ~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~---~---~~~~~~~~~~~-- 187 (507)
.....++++||||+++++ .. .....+.+.....+.. .+..+.+..++..... . . ...++..++.+
T Consensus 75 ~~~~~~l~~G~Ttv~d~g-~~--~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (379)
T PRK12394 75 RPDMYMPPNGVTTVVDAG-SA--GTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQY 151 (379)
T ss_pred CHHHHHHhCCccEEEECC-CC--CcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHC
Confidence 344568999999999986 22 2233444444433233 3344444444322111 0 1 11245555543
Q ss_pred -cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHH
Q 010547 188 -AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (507)
Q Consensus 188 -~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (507)
.++.+++.++.... . ...+++.+.+.++.|++++.++.+|+++... +
T Consensus 152 ~~~~~g~ki~~~~~~-~--~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~----------------------------~- 199 (379)
T PRK12394 152 RNVLQGLKLRVQTED-I--AEYGLKPLTETLRIANDLRCPVAVHSTHPVL----------------------------P- 199 (379)
T ss_pred cCcEEEEEEEEeccc-c--cccchHHHHHHHHHHHHcCCCEEEEeCCCCc----------------------------c-
Confidence 35667776542211 1 1467899999999999999999999965432 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCC-------h--hHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCc
Q 010547 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-------A--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 337 (507)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~-------~--~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (507)
..+.+.+... + ....|+.. . ....+.++.++++|+.+... ++
T Consensus 200 --~~~~~~~l~~--------g--~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~g---------------- 250 (379)
T PRK12394 200 --MKELVSLLRR--------G--DIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAA-NG---------------- 250 (379)
T ss_pred --HHHHHHhcCC--------C--CEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEec-CC----------------
Confidence 1122222221 2 12344422 1 13356777788888533221 11
Q ss_pred eeEcCCCCChhhHHHHHHHHhcCC-eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 010547 338 FKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 416 (507)
Q Consensus 338 ~~~~p~~~~~~~~~~~~~~l~~G~-~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al 416 (507)
+...+.+.+++++.+|+ ++++|||+.+++.... . ...+..++....+.++++++++
T Consensus 251 -------~s~~~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~---------------~-~~~l~~~~~~~~~~~~~~~~~~ 307 (379)
T PRK12394 251 -------RSHFDMNVARRAIANGFLPDIISSDLSTITKLAW---------------P-VYSLPWVLSKYLALGMALEDVI 307 (379)
T ss_pred -------ccccchHHHHHHHHCCCCceEEECCCCCCCcccC---------------c-cchHHHHHHHHHHcCCCHHHHH
Confidence 01122345578899995 8999999988753211 0 0114445556667899999999
Q ss_pred HHHhhchhHHhCCC-CCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee----EEEEEEECCEEEEe
Q 010547 417 SWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYK 491 (507)
Q Consensus 417 ~~~T~n~A~~lgl~-~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~V~~v~v~G~~v~~ 491 (507)
+++|.|||+++|++ +.|+|++|+.|||+++|.+.++.. ..-+.+....+ .|..|||+|++||+
T Consensus 308 ~~at~~~a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~------------~~d~~g~~~~~~~~~~v~~t~v~G~~v~~ 375 (379)
T PRK12394 308 NACTHTPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVE------------FADIHGETLTGTHVLVPQMTIKSGEILYR 375 (379)
T ss_pred HHHHHHHHHHhCCCCCCCccCCCCccCEEEEecCcCcce------------eccCCCCEEEeeeecceEEEEECCEEEEe
Confidence 99999999999994 789999999999999998875431 22245566655 69999999999998
Q ss_pred c
Q 010547 492 E 492 (507)
Q Consensus 492 ~ 492 (507)
+
T Consensus 376 ~ 376 (379)
T PRK12394 376 Q 376 (379)
T ss_pred c
Confidence 5
|
|
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=284.35 Aligned_cols=372 Identities=17% Similarity=0.191 Sum_probs=219.0
Q ss_pred eEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC-----
Q 010547 44 QYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW----- 115 (507)
Q Consensus 44 ~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~----- 115 (507)
+++|+|++|++++. +.+++|+|+||+|++||+... . ..++||++|++|+|||||+|+|+........
T Consensus 2 ~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~-~----~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~ 76 (418)
T PRK06380 2 SILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE-E----ADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVD 76 (418)
T ss_pred eEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC-C----CCEEEECCCCEEccCEEeeccCCCccccCCcccCCC
Confidence 47899999998763 458899999999999998542 1 4689999999999999999999975422210
Q ss_pred -----------------CC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecc-ccC
Q 010547 116 -----------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVP 173 (507)
Q Consensus 116 -----------------~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 173 (507)
+. ......+++++||||++++. . ..+.+.+.......+..+....... ...
T Consensus 77 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~-~------~~~~~~~a~~~~G~r~~~~~~~~~~~~~~ 149 (418)
T PRK06380 77 LEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLY-Y------SEDIIAKAAEELGIRAFLSWAVLDEEITT 149 (418)
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccc-c------ChHHHHHHHHHhCCeEEEecccccCCccc
Confidence 00 11234577899999999774 1 1223322222222222222111110 000
Q ss_pred CCcccHHHHHHHHH--cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCcCCc
Q 010547 174 ENAYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDT 250 (507)
Q Consensus 174 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~~~~ 250 (507)
......+...++.+ .+..-+...+.+ .+...+++++++++++.|++++.++.+|+.+... +.......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g----- 221 (418)
T PRK06380 150 QKGDPLNNAENFIREHRNEELVTPSIGV---QGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTG----- 221 (418)
T ss_pred ccchHHHHHHHHHHHhcCCCCeEEEEEC---CCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhC-----
Confidence 00111112222222 111112222222 3445679999999999999999999999965321 100000000
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccC
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~ 330 (507)
...++.+..+.. .+.++.+.|+... +.+.++.+++.|+.+. +||.....
T Consensus 222 ---------------~~~ie~~~~~g~--------l~~~~~~~H~~~l--~~~d~~~la~~g~~v~--~~P~sn~~---- 270 (418)
T PRK06380 222 ---------------ERPVEHLEKIGF--------LNSKLIAAHCVWA--TYHEIKLLSKNGVKVS--WNSVSNFK---- 270 (418)
T ss_pred ---------------CCHHHHHHHCCC--------CCCCeEEEEeecC--CHHHHHHHHHcCCEEE--ECHHHHHh----
Confidence 000111111111 1445677777663 3345777777786554 36642100
Q ss_pred CCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhh-HHHHHHHHHH---
Q 010547 331 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVTWSYGR--- 406 (507)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~--- 406 (507)
+ +. ....++.++++.|+.+++|||....+...++ ++. .+........
T Consensus 271 l---~~-----------~g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~---------------~~~~~~~~~~~~~~~~~ 321 (418)
T PRK06380 271 L---GT-----------GGSPPIPEMLDNGINVTIGTDSNGSNNSLDM---------------FEAMKFSALSVKNERWD 321 (418)
T ss_pred h---cc-----------CCCCcHHHHHHCCCeEEEcCCCCcCCCCcCH---------------HHHHHHHHHHhhhccCC
Confidence 0 00 0122456888999999999997533211111 110 0111111001
Q ss_pred hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe---eEEEEEE
Q 010547 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATI 483 (507)
Q Consensus 407 ~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~v~ 483 (507)
...++++++++++|.|||++||+ +.|+|++||.||||++|.+.+...+.. . .+|+..+... ..|..||
T Consensus 322 ~~~~~~~~~l~~aT~~gA~~lg~-~~G~l~~G~~ADlvv~d~~~~~~~p~~-------~-~~~~~~lv~~~~~~~v~~v~ 392 (418)
T PRK06380 322 ASIIKAQEILDFATINAAKALEL-NAGSIEVGKLADLVILDARAPNMIPTR-------K-NNIVSNIVYSLNPLNVDHVI 392 (418)
T ss_pred CCcCCHHHHHHHHHHHHHHHhCC-CCCccCCCccCCEEEEeCCCCccCCCC-------c-cChHHheeecCCCCceeEEE
Confidence 11379999999999999999999 489999999999999998765443211 0 2334434333 3699999
Q ss_pred ECCEEEEecCcccCCCCCccc
Q 010547 484 SRGNLVYKEGNHAPAACGSPI 504 (507)
Q Consensus 484 v~G~~v~~~g~~~~~~~~~~~ 504 (507)
|+|++++++|++++.+.++.+
T Consensus 393 v~G~~v~~~g~~~~~d~~~~~ 413 (418)
T PRK06380 393 VNGKILKENGRLNGFNPDEFI 413 (418)
T ss_pred ECCEEEEECCeECccCHHHHh
Confidence 999999999999987766543
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=286.64 Aligned_cols=368 Identities=18% Similarity=0.196 Sum_probs=216.6
Q ss_pred EEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC---CCC-----
Q 010547 45 YWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT----- 113 (507)
Q Consensus 45 ~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~---~~~----- 113 (507)
++|+|++|+++++ ..+++|+|+||||++|++..+.+. +.+.++||++|++|+|||||+|+|+... +..
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~-~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~ 79 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPA-YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPL 79 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCcccccc-CCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCH
Confidence 4799999999853 568999999999999998755321 2367899999999999999999998642 110
Q ss_pred ---------------CCCChh----HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccC-
Q 010547 114 ---------------EWEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP- 173 (507)
Q Consensus 114 ---------------~~~~~~----~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (507)
+.+.+. ..+..++++||||++++. ...+ +...+..+....+..+...... ...
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~-----~~~~~~~~~~g~r~~~~~~~~~-~~~~ 152 (411)
T cd01298 80 MEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMY-FFYP-----DAVAEAAEELGIRAVLGRGIMD-LGTE 152 (411)
T ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECcc-ccch-----HHHHHHHHHhCCeEEEEcceec-CCCc
Confidence 011111 234456799999999885 2221 2222222211112111111110 100
Q ss_pred ---CCcccHHHHHHH----HHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhccc
Q 010547 174 ---ENAYNASALEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLED 245 (507)
Q Consensus 174 ---~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~ 245 (507)
......++..++ ...|...++.++... .....+++++.++++.|+++|.++.+|+.+... ........+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~ 229 (411)
T cd01298 153 DVEETEEALAEAERLIREWHGAADGRIRVALAPH---APYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYG 229 (411)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCC---CCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhC
Confidence 011112222222 233455666665432 223468899999999999999999999743321 110000000
Q ss_pred CcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccc
Q 010547 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~ 325 (507)
....+...+.+ ..+.++.+.|+... +.+.++.+++.|+.+ .+||....
T Consensus 230 ------------------------~~~~~~~~~~~----~~~~~~~i~H~~~l--~~~~~~~l~~~gi~~--~~~p~~~~ 277 (411)
T cd01298 230 ------------------------KRPVEYLEELG----LLGPDVVLAHCVWL--TDEEIELLAETGTGV--AHNPASNM 277 (411)
T ss_pred ------------------------CCHHHHHHHcC----CCCCCeEEEEecCC--CHHHHHHHHHcCCeE--EEChHHhh
Confidence 00111111110 11455677777753 335677778888654 44664211
Q ss_pred ccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhh-HHHHHHHH
Q 010547 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVTWSY 404 (507)
Q Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 404 (507)
. + + ....++.+++++|+.+++|||+.++....+ .+.. .+...+..
T Consensus 278 ~----~---~------------~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~~---------------~~~~~~~~~~~~~ 323 (411)
T cd01298 278 K----L---A------------SGIAPVPEMLEAGVNVGLGTDGAASNNNLD---------------MFEEMRLAALLQK 323 (411)
T ss_pred h----h---h------------hCCCCHHHHHHCCCcEEEeCCCCccCCCcC---------------HHHHHHHHHHHhc
Confidence 0 0 0 011235678889999999999764321111 1111 11111111
Q ss_pred HH---hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEE
Q 010547 405 GR---KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 481 (507)
Q Consensus 405 ~~---~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 481 (507)
.. +.+++++++++++|.|||+++|++++|+|++|+.|||+++|.+..+..+.. ++.+. +......+.|..
T Consensus 324 ~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~------~~~~~~~~~v~~ 396 (411)
T cd01298 324 LAHGDPTALPAEEALEMATIGGAKALGLDEIGSLEVGKKADLILIDLDGPHLLPVH-DPISH------LVYSANGGDVDT 396 (411)
T ss_pred cccCCCCcCCHHHHHHHHHhhHHHHhCCccCCCcCCCccCCEEEEeCCCCccCCcc-chhhH------heEecCCCCeeE
Confidence 11 126999999999999999999996679999999999999998865544322 11111 000112357999
Q ss_pred EEECCEEEEecCccc
Q 010547 482 TISRGNLVYKEGNHA 496 (507)
Q Consensus 482 v~v~G~~v~~~g~~~ 496 (507)
||++|++||++|+++
T Consensus 397 v~~~G~~v~~~~~~~ 411 (411)
T cd01298 397 VIVNGRVVMEDGELL 411 (411)
T ss_pred EEECCEEEEECCEeC
Confidence 999999999999864
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=272.41 Aligned_cols=349 Identities=21% Similarity=0.261 Sum_probs=229.2
Q ss_pred CcceEEEEecEEECC-CCceeeeEEEeCCEEEEeecCCCCCC---------CCCCCcEEecCCCEEecceeecccccCCC
Q 010547 41 PYNQYWLTSKRIVTP-KGVISGAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~-~~~~~~~I~I~dG~I~~Vg~~~~~~~---------~~~~~~viD~~g~~v~PGfID~H~H~~~~ 110 (507)
...+++|+|++|+|+ .++..++|.|+||||++|++..++.. ...++++||++|++|+|||||+|+|+..+
T Consensus 66 ~~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~P 145 (569)
T PRK13308 66 GALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSA 145 (569)
T ss_pred CcCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCc
Confidence 356899999999996 45778999999999999997642210 01257899999999999999999998764
Q ss_pred CCCCCCChhHHHHHHHhCCceEEEeCCCC-CCC-CCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHc
Q 010547 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLN-SDP-STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 188 (507)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~GvTt~~~~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (507)
.. .+.++++||||+++++++ +.| .......+....+..+. ..+++.+++.... ...+.+.++.+.
T Consensus 146 g~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~-~pvN~g~~gkG~~---s~~aeL~eli~a 212 (569)
T PRK13308 146 QL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVNFGFLGRGNS---SKPAALIEQVEA 212 (569)
T ss_pred cH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhc-CCccEEEEcCCcc---cCHHHHHHHHHC
Confidence 32 378899999999986321 112 24556667777766664 4678877654322 346788888999
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
|+.++|.+..+ ..+++.+.++++.|++++.++.+|++.... ...
T Consensus 213 GA~GfKi~ed~-------g~t~~~i~~aL~~A~~~dv~VaiHadtlne-----------------------------~g~ 256 (569)
T PRK13308 213 GACGLKIHEDW-------GAMPAAIDTCLEVADEYDFQVQLHTDTLNE-----------------------------SGF 256 (569)
T ss_pred CCCEEeecCCC-------CCCHHHHHHHHHHHHhcCCEEEEeCCCcCc-----------------------------chH
Confidence 99999986422 458899999999999999999999976432 123
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCC
Q 010547 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (507)
++..+..+. |..+|+.|...+. -..+.++.+...++..+ .+.| ...++.+.+...-...+.+..+..
T Consensus 257 ~E~t~~a~~---------gr~iH~~H~egaggghapd~l~~~~~~n~lp~-stnp-t~p~t~nt~~e~~dm~m~~h~l~~ 325 (569)
T PRK13308 257 VEDTLAAIG---------GRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPS-STNP-TNPYTVNTFDEHLDMTMVCHHLNP 325 (569)
T ss_pred HHHHHHHhc---------CCeEEEEeccCCccCchhHHHHHhCCCCccCC-CCCC-CCCCccCchhhhcCeEEEecCCCC
Confidence 344454444 8889999998641 12333444333333211 1222 233334444333223333322210
Q ss_pred --hhhHHH---------H--HH-HHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh----c
Q 010547 347 --AANKEK---------L--WE-ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK----Y 408 (507)
Q Consensus 347 --~~~~~~---------~--~~-~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~ 408 (507)
+++.+. + -. +-..|+...+.||... ++.+...+...|..+.+ .
T Consensus 326 ~~~~d~afa~srir~~ti~ae~~l~d~g~~s~~~sds~~-------------------mgr~~e~i~r~~q~a~~~~~~~ 386 (569)
T PRK13308 326 DVPEDVAFAESRIRAQTIAAEDVLHDIGAISMLGSDSQG-------------------MGRIAEVIARTWQLASKMKDQR 386 (569)
T ss_pred CCcchhhhhhhhccceeeccCchhhcCCcEEEEecchHH-------------------HhHHHHHHHHHHHHHHHHhhcC
Confidence 111110 0 01 1234889999999652 22222334444444322 2
Q ss_pred -CCCHHH-----------HHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE
Q 010547 409 -GVTLEQ-----------LASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 475 (507)
Q Consensus 409 -gls~~~-----------al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (507)
.++.++ .++++|.|||+++|+ +++|+|++||.||||+|+.+. +. .
T Consensus 387 g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~----------fg--v---------- 444 (569)
T PRK13308 387 GPLPEDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAF----------FG--I---------- 444 (569)
T ss_pred CCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcc----------cC--C----------
Confidence 266554 799999999999999 678999999999999999652 10 0
Q ss_pred eeEEEEEEECCEEEEec
Q 010547 476 SGKVLATISRGNLVYKE 492 (507)
Q Consensus 476 ~~~V~~v~v~G~~v~~~ 492 (507)
++..||++|+++|..
T Consensus 445 --~p~~ti~~G~iv~~~ 459 (569)
T PRK13308 445 --KPELVIKGGFPAWAA 459 (569)
T ss_pred --CeeEEEECCEEEEec
Confidence 467899999999864
|
|
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=274.25 Aligned_cols=355 Identities=20% Similarity=0.226 Sum_probs=229.6
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCC---------CCCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~---------~~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
..+++|+|++|+|..++..++|.|+||+|++|++...... ...+.++||++|++|+|||||+|+|+..+.
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~Pg- 148 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICPQ- 148 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCch-
Confidence 5679999999999888788999999999999997532210 012578999999999999999999987543
Q ss_pred CCCCChhHHHHHHHhCCceEEEeCCCCC----CCCCCCHH--HHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH
Q 010547 113 TEWEGFPSGTKAAAAGGITTLIDMPLNS----DPSTISTE--TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (507)
Q Consensus 113 ~~~~~~~~~~~~~l~~GvTt~~~~~~~~----~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (507)
..+.++++||||+++++.+. .+...... .+....+..+ ...+++.+++.. .....+.+.++.
T Consensus 149 --------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~g---~~~~~~~L~el~ 216 (573)
T PRK13206 149 --------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGKG---NTVSAEALWEQL 216 (573)
T ss_pred --------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecCc---CcCCHHHHHHHH
Confidence 23889999999999864221 12212222 3334444444 467788877632 233456888999
Q ss_pred HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHH
Q 010547 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (507)
Q Consensus 187 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (507)
+.|+.++|.+. .+..+++.+.++++.|++++.++.+|++.....
T Consensus 217 ~aGA~GfKi~~-------d~g~t~~~i~~aL~~A~~~gv~V~iHadtlne~----------------------------- 260 (573)
T PRK13206 217 RGGAGGFKLHE-------DWGSTPAAIDACLRVADAAGVQVALHSDTLNEA----------------------------- 260 (573)
T ss_pred HCCCcEEeecC-------ccCCCHHHHHHHHHHHHHhCCEEEEECCCcccc-----------------------------
Confidence 99999999863 235889999999999999999999999865431
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCC
Q 010547 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344 (507)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 344 (507)
..++..+..+. |..+|..|...+. -..+.++.+...++..+ .+.| ...++.+.+...-...+.+..+
T Consensus 261 g~~E~t~aa~~---------gr~iH~~H~egaggghapd~~~~~~~~n~lp~-stnp-t~p~~~nt~~e~~~m~m~~h~l 329 (573)
T PRK13206 261 GFVEDTLAAIA---------GRSIHAYHTEGAGGGHAPDIITVASHPNVLPS-STNP-TRPHTVNTLDEHLDMLMVCHHL 329 (573)
T ss_pred chhhHHHHHhc---------CCeEEEEeccCCCcCcccHHHHhcCCCCCcCC-CCCC-CCCCcccchhhhhCeEEeeccC
Confidence 12233444433 8899999998641 23445555444443221 1222 2333334333322223332222
Q ss_pred CC--hhhH---------HHH---HHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH----
Q 010547 345 RD--AANK---------EKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---- 406 (507)
Q Consensus 345 ~~--~~~~---------~~~---~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 406 (507)
.. +++. +.+ -.+.+.|+..+++||..+....... . ...+........
T Consensus 330 ~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~-----~----------~~~~q~a~~~~~rr~~ 394 (573)
T PRK13206 330 NPAVPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGEV-----V----------LRTWQTAHVMKRRRGA 394 (573)
T ss_pred CCCCcchhhhhhhhccceeeccCchHhhCCcEEeccCCccccccccch-----h----------hhHHHHHHHHHhccCC
Confidence 10 0111 111 1245569999999997752111000 0 000111111111
Q ss_pred ------hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEE
Q 010547 407 ------KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479 (507)
Q Consensus 407 ------~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 479 (507)
+..++.++++++.|.|||+++|+ +.+|+|++||.||||+||.+.. . -++
T Consensus 395 l~g~~~~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f----------~--------------~~~ 450 (573)
T PRK13206 395 LPGDGRADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFF----------G--------------VRP 450 (573)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECcccc----------C--------------CCc
Confidence 22388999999999999999999 6789999999999999996520 0 046
Q ss_pred EEEEECCEEEEec-Ccc
Q 010547 480 LATISRGNLVYKE-GNH 495 (507)
Q Consensus 480 ~~v~v~G~~v~~~-g~~ 495 (507)
..||++|+++|.. |..
T Consensus 451 ~~ti~~G~iv~~~~gd~ 467 (573)
T PRK13206 451 HAVLKGGAIAWAAMGDA 467 (573)
T ss_pred cEEEECCEEEEecCCCh
Confidence 7899999999976 544
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=282.54 Aligned_cols=375 Identities=16% Similarity=0.147 Sum_probs=221.8
Q ss_pred EEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC-----
Q 010547 45 YWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW----- 115 (507)
Q Consensus 45 ~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~----- 115 (507)
+++.|+.|+++++ +.+++|+|+||+|++|++..+.+. .+.++||++|++|+|||||+|+|+........
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~--~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~ 81 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQ--PADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQD 81 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCC--CCCeEEeCCCCEEecceEeccccccchhcccccccCC
Confidence 4555579999876 357899999999999999765432 26789999999999999999999976422110
Q ss_pred ----C---------------C----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec---
Q 010547 116 ----E---------------G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG--- 169 (507)
Q Consensus 116 ----~---------------~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 169 (507)
+ . ......+++++||||++++. ...|.. ....+....++....+..-+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~-~~~~~~~~~~a~~~~G~R~~~~~~~~~ 159 (451)
T PRK08203 82 AELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHH-YLFPNG-LRDALDDQIEAAREIGMRFHATRGSMS 159 (451)
T ss_pred CcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcce-eecccc-ccchHHHHHHHHHHcCCeEEEecceee
Confidence 0 0 11234567899999999875 222321 122233333333322111111100
Q ss_pred ------cccCC-----CcccHHHHHHHHHcCC-----cEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 170 ------GLVPE-----NAYNASALEALLNAGV-----LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 170 ------~~~~~-----~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
+.... ..+..+...+..+.+. .-++..+.+ ......+++.++++++.|+++|.++.+|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~---~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e 236 (451)
T PRK08203 160 LGESDGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAP---CSPFSVSRELMRESAALARRLGVRLHTHLAE 236 (451)
T ss_pred cCCccCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEec---CCCCcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 00110 0111233333333221 123322222 2234678999999999999999999999843
Q ss_pred ccc-chhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCC
Q 010547 234 EKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 312 (507)
Q Consensus 234 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g 312 (507)
... ........+ ..-++.+.+.+ ..+.++.+.|+..- +.+.++.+++.|
T Consensus 237 ~~~~~~~~~~~~g------------------------~~~~~~l~~~g----~l~~~~~~~H~~~l--~~~~~~~la~~g 286 (451)
T PRK08203 237 TLDEEAFCLERFG------------------------MRPVDYLEDLG----WLGPDVWLAHCVHL--DDAEIARLARTG 286 (451)
T ss_pred CHHHHHHHHHHhC------------------------CCHHHHHHHcC----CCCCCeEEEEEeCC--CHHHHHHHHhcC
Confidence 221 110000000 00011122211 11556777777763 344677777888
Q ss_pred CCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCc
Q 010547 313 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 392 (507)
Q Consensus 313 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~ 392 (507)
+.+.. ||..... ......++.++++.|+++++|||+.+++...+
T Consensus 287 ~~v~~--~P~~~~~-------------------l~~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~--------------- 330 (451)
T PRK08203 287 TGVAH--CPCSNMR-------------------LASGIAPVRELRAAGVPVGLGVDGSASNDGSN--------------- 330 (451)
T ss_pred CeEEE--CcHHhhh-------------------hccCCCCHHHHHHCCCeEEEecCCCccCCCcC---------------
Confidence 76543 6631100 00111245678889999999999764321111
Q ss_pred hhhh-HHHHHHHHHH--hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCcc
Q 010547 393 SLQF-VLPVTWSYGR--KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 469 (507)
Q Consensus 393 ~~~~-~l~~~~~~~~--~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~ 469 (507)
.+.. .+........ ...++++++++++|.|||+++|++++|+|++||.|||+++|.+.+.. ... ++|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~~~---------~~~-~~p 400 (451)
T PRK08203 331 LIGEARQALLLQRLRYGPDAMTAREALEWATLGGARVLGRDDIGSLAPGKLADLALFDLDELRF---------AGA-HDP 400 (451)
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCccCEEEEcCCcccc---------CCc-cCh
Confidence 1111 1111111111 22489999999999999999999767999999999999999886432 122 455
Q ss_pred ccCcEE--eeEEEEEEECCEEEEecCcccCCCCCc
Q 010547 470 YLGRRL--SGKVLATISRGNLVYKEGNHAPAACGS 502 (507)
Q Consensus 470 ~~~~~~--~~~V~~v~v~G~~v~~~g~~~~~~~~~ 502 (507)
|.++.. .+.|..||++|++||++|++++.+..+
T Consensus 401 ~~~l~~~~~~~v~~v~v~G~~v~~~~~~~~~d~~~ 435 (451)
T PRK08203 401 VAALVLCGPPRADRVMVGGRWVVRDGQLTTLDLAA 435 (451)
T ss_pred HHHHHccCCCCccEEEECCEEEEECCcccCCCHHH
Confidence 554433 357999999999999999998766543
|
|
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=282.42 Aligned_cols=368 Identities=18% Similarity=0.170 Sum_probs=219.6
Q ss_pred cceEEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC---
Q 010547 42 YNQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--- 114 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~--- 114 (507)
+.+++|+|++|++.++ +.+++|+|+||+|++|++..+.+ +.++||++|++|+|||||+|+|+.......
T Consensus 1 ~~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~~----~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~ 76 (449)
T PRK08204 1 MKRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEAP----DAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGA 76 (449)
T ss_pred CCcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCCC----CCeEEeCCCCEEecCEEeeeeccchhhhccccC
Confidence 3567899999998654 35789999999999999865432 568999999999999999999985321100
Q ss_pred ------CC-----C-------------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecc
Q 010547 115 ------WE-----G-------------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170 (507)
Q Consensus 115 ------~~-----~-------------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (507)
+- . .......++++||||++++. ...+ .........+.+...+...+...+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~-~~~~---~~~~~~~~~~~~~~~G~r~~~~~~~ 152 (449)
T PRK08204 77 DWTLQTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWS-HINN---SPEHADAAIRGLAEAGIRAVFAHGS 152 (449)
T ss_pred CCcHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecc-cccC---ChhHHHHHHHHHHHcCCeEEEEccc
Confidence 00 0 11234578999999999875 2111 1222222233332211111111110
Q ss_pred ccC-------CCcccHHHHHHHHH---cCCcE-EEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchh
Q 010547 171 LVP-------ENAYNASALEALLN---AGVLG-LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (507)
Q Consensus 171 ~~~-------~~~~~~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 239 (507)
... ......+....+.+ .+... +...... .+....+++.+.++++.|+++|.++.+|+.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~--- 226 (449)
T PRK08204 153 PGPSPYWPFDSVPHPREDIRRVKKRYFSSDDGLLTLGLAI---RGPEFSSWEVARADFRLARELGLPISMHQGFGPW--- 226 (449)
T ss_pred cCCCCCCCcchhhhhHHHHHHHHHhhccCCCCceEEEEec---CCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCc---
Confidence 100 01112222332222 22211 1111111 2223467899999999999999999999953221
Q ss_pred hhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEec
Q 010547 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (507)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~ 319 (507)
. . ....++.+ .+.+ ..+.+..+.|+... +.+.++.+++.|+.+..
T Consensus 227 ------------~-----~------~~~~~~~l----~~~g----~~~~~~~i~H~~~~--~~~~~~~la~~g~~v~~-- 271 (449)
T PRK08204 227 ------------G-----A------TPRGVEQL----HDAG----LLGPDLNLVHGNDL--SDDELKLLADSGGSFSV-- 271 (449)
T ss_pred ------------c-----c------CCCHHHHH----HHCC----CCCCCeEEEecCCC--CHHHHHHHHHcCCCEEE--
Confidence 0 0 00011222 2211 12566788898873 34567788888887654
Q ss_pred ccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhh-HH
Q 010547 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VL 398 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 398 (507)
||..... .+ ....++.+++++|+.+++|||..+.+.... ++. .+
T Consensus 272 ~P~~~~~-------~g------------~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~----------------~~~~~~ 316 (449)
T PRK08204 272 TPEIEMM-------MG------------HGYPVTGRLLAHGVRPSLGVDVVTSTGGDM----------------FTQMRF 316 (449)
T ss_pred ChHHHhh-------hc------------CCCCcHHHHHhcCCceeeccccCCCCCcCH----------------HHHHHH
Confidence 6632100 00 011235677888999999999754321110 000 01
Q ss_pred HHHHHH--------------HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccC
Q 010547 399 PVTWSY--------------GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 463 (507)
Q Consensus 399 ~~~~~~--------------~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~ 463 (507)
...... ..+.+++++++++++|.|||+++|+ +++|+|++||.||||++|.+.+...+.
T Consensus 317 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~------- 389 (449)
T PRK08204 317 ALQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPV------- 389 (449)
T ss_pred HHHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCC-------
Confidence 100000 0125689999999999999999999 668999999999999999875432211
Q ss_pred CCCCccccCcEE---eeEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 464 HPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 464 ~~~~~~~~~~~~---~~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
.+|+..+.. ..+|..||++|++||++|+++..+..+.
T Consensus 390 ---~dp~~~lv~~~~~~~v~~v~v~G~~v~~~~~~~~~d~~~~ 429 (449)
T PRK08204 390 ---HDPVGAVVQSAHPGNVDSVMVAGRAVKRNGKLLGVDLERL 429 (449)
T ss_pred ---cChhhhheeccCCCCceEEEECCEEEEECCEeccCCHHHH
Confidence 233333332 2579999999999999999998765543
|
|
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=279.38 Aligned_cols=375 Identities=15% Similarity=0.161 Sum_probs=219.2
Q ss_pred ceEEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---C-
Q 010547 43 NQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---E- 114 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---~- 114 (507)
.+++|+|+.|++++. +.+++|+|+||+|++|++....+..+++.++||++|++|+|||||+|+|+...... .
T Consensus 7 ~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~~ 86 (443)
T PRK09045 7 VDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADD 86 (443)
T ss_pred ccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccCC
Confidence 588999999999763 35789999999999999875543333367899999999999999999999642110 0
Q ss_pred -----------C--C----C-------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec-
Q 010547 115 -----------W--E----G-------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG- 169 (507)
Q Consensus 115 -----------~--~----~-------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (507)
+ + + ....+.+++++||||+.++. . ........ ..+.+....++...
T Consensus 87 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~-~------~~~~~~~~--~~~~G~R~~~~~~~~ 157 (443)
T PRK09045 87 LPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMY-F------FPEAAAEA--AHQAGMRAQIGMPVL 157 (443)
T ss_pred CCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecc-c------cHHHHHHH--HHHcCCeEEEecccc
Confidence 0 0 0 01234567899999999863 1 11221111 11222221111110
Q ss_pred cccCC-CcccHHHHH---HHHH--cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcc-cchhhhh
Q 010547 170 GLVPE-NAYNASALE---ALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVK 242 (507)
Q Consensus 170 ~~~~~-~~~~~~~~~---~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~-~~~~~~~ 242 (507)
.+... .....+.++ ++.+ .+...++..+.+ .....++++.++++++.|+++|.++.+|+.... .+...+.
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~ 234 (443)
T PRK09045 158 DFPTAWASDADEYLAKGLELHDQWRHHPLISTAFAP---HAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLK 234 (443)
T ss_pred cCCCccccCHHHHHHHHHHHHHHhcCCCcEEEEEeC---CCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHH
Confidence 01000 011111121 2221 122334443332 223367899999999999999999999985321 1111110
Q ss_pred cccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccc
Q 010547 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~ 322 (507)
..+ . ..++.+ .+.+ ..+.+..+.|+... ..+.++.+++.|+.+. +||.
T Consensus 235 ~~g----------------~----~~~~~l----~~~g----~l~~r~~~~H~~~l--~~~~~~~la~~g~~i~--~~P~ 282 (443)
T PRK09045 235 QHG----------------Q----RPLARL----ARLG----LLGPRLIAVHMTQL--TDAEIALLAETGCSVV--HCPE 282 (443)
T ss_pred HhC----------------C----CHHHHH----HHcC----CCCCCeEEEEecCC--CHHHHHHHHHcCCeEE--ECHH
Confidence 000 0 001112 1111 11456667777753 3345666677776554 3663
Q ss_pred cccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH
Q 010547 323 YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (507)
.. .. ......++.++++.|+.+++|||+.+.....++. .+..+...+
T Consensus 283 ~~------~~-------------~~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~a~~~ 329 (443)
T PRK09045 283 SN------LK-------------LASGFCPVAKLLQAGVNVALGTDGAASNNDLDLF--------------GEMRTAALL 329 (443)
T ss_pred HH------hh-------------hccCCCcHHHHHHCCCeEEEecCCCCCCCCccHH--------------HHHHHHHHH
Confidence 10 00 0011234567788999999999976532211110 011111111
Q ss_pred HHH---HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCc---EE
Q 010547 403 SYG---RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR---RL 475 (507)
Q Consensus 403 ~~~---~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 475 (507)
... ...+++++++++++|.|||+++|+ +++|+|++||.||||++|.+.....+. .+++..+ ..
T Consensus 330 ~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~----------~~~~~~lv~~~~ 399 (443)
T PRK09045 330 AKAVAGDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPV----------YDPVSQLVYAAG 399 (443)
T ss_pred HhhccCCCCcCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCc----------cChHhHhhEeCC
Confidence 111 123589999999999999999999 668999999999999999875422110 1111111 12
Q ss_pred eeEEEEEEECCEEEEecCcccCCCCCccc
Q 010547 476 SGKVLATISRGNLVYKEGNHAPAACGSPI 504 (507)
Q Consensus 476 ~~~V~~v~v~G~~v~~~g~~~~~~~~~~~ 504 (507)
...|..|||+|++||++|++++.+..+.+
T Consensus 400 ~~~v~~v~v~G~~v~~~g~~~~~d~~~~~ 428 (443)
T PRK09045 400 REQVSHVWVAGKQLLDDRELTTLDEAELL 428 (443)
T ss_pred CCCccEEEECCEEEEECCcCCCCCHHHHH
Confidence 24799999999999999999987766543
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=278.72 Aligned_cols=373 Identities=16% Similarity=0.092 Sum_probs=216.7
Q ss_pred EEEEecEEECCCC---c-eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC------
Q 010547 45 YWLTSKRIVTPKG---V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------ 114 (507)
Q Consensus 45 ~~i~n~~i~~~~~---~-~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~------ 114 (507)
++|+|++|++.++ + .+++|+|+||+|++||+..+....+++.++||++|++|+|||||+|+|+.......
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 6899999998543 2 36899999999999997533222122568999999999999999999986421110
Q ss_pred -CCC--------------------h----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec
Q 010547 115 -WEG--------------------F----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (507)
Q Consensus 115 -~~~--------------------~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (507)
... + ...+.+++++||||++++. ....... .......++....+...+...
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~-~~~~~~~--~~~~~~~~a~~~~GiR~~~~~- 157 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHH-ASPNYIG--GSLFTIADAAKKVGLRAMLCY- 157 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccc-ccccccc--chHHHHHHHHHHhCCeEEEec-
Confidence 000 0 1123567899999999874 1111111 112222333322211111111
Q ss_pred cccCCC-cc----cHHHHHHHHH--cC--CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chh
Q 010547 170 GLVPEN-AY----NASALEALLN--AG--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SER 239 (507)
Q Consensus 170 ~~~~~~-~~----~~~~~~~~~~--~g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~ 239 (507)
+..... .. ..+...++.+ .+ ...+...+.+ ...+.++++.++++.+.|++++.++++|..+... ...
T Consensus 158 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p---~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~ 234 (442)
T PRK07203 158 ETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGL---HASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSD 234 (442)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEcc---CCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHH
Confidence 111111 11 1111122211 11 1123333322 3345678999999999999999999999855332 111
Q ss_pred hhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEec
Q 010547 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (507)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~ 319 (507)
.....+ ....+...+.+ . -+.++.+.|+.+- ..+.++.+++.|+.+. +
T Consensus 235 ~~~~~g------------------------~~~v~~l~~~G--l--l~~~~~~~H~~~~--~~~d~~~la~~g~~v~--~ 282 (442)
T PRK07203 235 SHKKYG------------------------KDIVERLADFG--L--LGEKTLAAHCIYL--SDEEIDLLKETDTFVV--H 282 (442)
T ss_pred HHHHcC------------------------CCHHHHHHhCC--C--CCCCcEEEEeecC--CHHHHHHHHhcCCeEE--E
Confidence 110000 01122222221 1 1556777777763 3345666777786654 4
Q ss_pred ccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHH
Q 010547 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 399 (507)
||.. +.. ......++.+++++|+.+++|||+...++...+ .+.
T Consensus 283 ~P~s------n~~-------------l~~g~~p~~~~~~~Gv~v~lGtD~~~~d~~~~~------------------~~a 325 (442)
T PRK07203 283 NPES------NMG-------------NAVGYNPVLEMIKNGILLGLGTDGYTSDMFESY------------------KVA 325 (442)
T ss_pred Cchh------hhh-------------cccCCCCHHHHHHCCCeEEEcCCCCCccHHHHH------------------HHH
Confidence 6631 110 111223456888999999999997644332211 111
Q ss_pred HHHHHHH--hcCCCHHHHHHHHhhchhHHhC--C-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcE
Q 010547 400 VTWSYGR--KYGVTLEQLASWWSERPAKLAG--Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 474 (507)
Q Consensus 400 ~~~~~~~--~~gls~~~al~~~T~n~A~~lg--l-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (507)
.+..... ....+++++++++|.|||+++| + ++.|+|++||.|||+++|.+.++..+. .+|+..+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~v 395 (442)
T PRK07203 326 NFKHKHAGGDPNVGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNE----------DNINGHIL 395 (442)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCc----------cccccceE
Confidence 1111111 1124578999999999999999 4 568999999999999999886544321 12222222
Q ss_pred E---eeEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 475 L---SGKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 475 ~---~~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
. ...|..|||+|++||++|+++..+..+.
T Consensus 396 ~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~i 427 (442)
T PRK07203 396 FGMNGGSVDTTIVNGKVVMEDRKFLNFDEESI 427 (442)
T ss_pred eecCCCceEEEEECCEEEEECCcccccCHHHH
Confidence 1 3579999999999999999988776543
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=268.48 Aligned_cols=357 Identities=22% Similarity=0.277 Sum_probs=230.0
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCC---------CCCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~---------~~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
..+++|+|++|++..++..++|.|+||||++|++...... ...+.++||++|++|+|||||+|+|+..+.+
T Consensus 64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P~~ 143 (567)
T cd00375 64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICPQQ 143 (567)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCccH
Confidence 4579999999999887778999999999999998642210 0125689999999999999999999865422
Q ss_pred CCCCChhHHHHHHHhCCceEEEeCCC------CCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH
Q 010547 113 TEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (507)
Q Consensus 113 ~~~~~~~~~~~~~l~~GvTt~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (507)
.+.++++||||++++++ ++.+.......+...++.++. ..+++.+++.. ..+..+++.++.
T Consensus 144 ---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~-~pin~g~~gkg---~~~~l~eL~e~~ 210 (567)
T cd00375 144 ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADG-LPVNIGFLGKG---NGSSPDALAEQI 210 (567)
T ss_pred ---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhc-CCceEEEEecC---ccccHHHHHHHH
Confidence 47899999999999621 112333446777777776663 45777776532 234567888888
Q ss_pred HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHH
Q 010547 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (507)
Q Consensus 187 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (507)
++|+.+|+.+.. +..++..+.++++.|++++.++.+|++.... .
T Consensus 211 ~aGA~GfK~~eD-------~g~t~~~i~~aL~~A~~~dv~VaiHadtlne-----------------------------~ 254 (567)
T cd00375 211 EAGACGLKLHED-------WGATPAAIDTCLSVADEYDVQVAIHTDTLNE-----------------------------S 254 (567)
T ss_pred HcCCEEEEecCC-------CCCCHHHHHHHHHHHHhhCCEEEEECCCCCc-----------------------------c
Confidence 999999998532 2458899999999999999999999976532 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCC
Q 010547 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344 (507)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 344 (507)
..++..+..+. |..+|..|...+. -..+.++.+...++..+ .+.| ...++.+.+...-...+.+..+
T Consensus 255 g~~E~t~aa~~---------gr~iH~~H~egaggghapdi~~~~~~~nvlp~-stnp-t~p~t~nt~~e~~dm~m~~h~l 323 (567)
T cd00375 255 GFVEDTIAAIK---------GRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPS-STNP-TRPFTVNTLDEHLDMLMVCHHL 323 (567)
T ss_pred hHHHHHHHHhc---------CCeEEEEecCCCCcccchHHHHhcCCCCcccC-CCCC-CCCCccCchhhhcCeEEeecCC
Confidence 22334444433 8899999998641 12334444333333211 1222 2333344433322233332222
Q ss_pred CC--hhhH---------HHH--HHH-HhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 010547 345 RD--AANK---------EKL--WEA-LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 409 (507)
Q Consensus 345 ~~--~~~~---------~~~--~~~-l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g 409 (507)
.. +++. +.+ -.. -..|+...++||..+-- .++-+..++-....+. ...|
T Consensus 324 ~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~s~~~sDs~~mg----------------r~ge~~~r~~q~a~k~~~~~g 387 (567)
T cd00375 324 DPNIPEDVAFAESRIRAETIAAEDVLHDLGAISIMSSDSQAMG----------------RVGEVILRTWQTAHKMKAQRG 387 (567)
T ss_pred CCCCcchhhhhhhhccchhhccchhhhccCcEEEEccchhhcC----------------ccceeeechHHHHHHHHHhcC
Confidence 10 0111 111 112 22489999999965211 1111111111111111 2223
Q ss_pred --------CCHH---HHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee
Q 010547 410 --------VTLE---QLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477 (507)
Q Consensus 410 --------ls~~---~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (507)
.+.. ..+++.|.|||+++|+ +++|+|++||.||||+|+.+.. . -
T Consensus 388 ~~~~~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f-----------~-------------~ 443 (567)
T cd00375 388 PLPEDSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFF-----------G-------------V 443 (567)
T ss_pred CCCcccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCccc-----------C-------------C
Confidence 2333 4499999999999999 7889999999999999996521 0 1
Q ss_pred EEEEEEECCEEEEec-CcccCC
Q 010547 478 KVLATISRGNLVYKE-GNHAPA 498 (507)
Q Consensus 478 ~V~~v~v~G~~v~~~-g~~~~~ 498 (507)
++..||++|+++|.. |....+
T Consensus 444 ~p~~vi~~G~iv~~~~gd~nas 465 (567)
T cd00375 444 KPEMVLKGGFIAYAQMGDPNAS 465 (567)
T ss_pred CeeEEEECCEEEEecCCCcccc
Confidence 468999999999987 665433
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=287.64 Aligned_cols=376 Identities=16% Similarity=0.146 Sum_probs=217.3
Q ss_pred eEEEEecEEECCCC-----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC-------C
Q 010547 44 QYWLTSKRIVTPKG-----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP-------G 111 (507)
Q Consensus 44 ~~~i~n~~i~~~~~-----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~-------~ 111 (507)
.++|+|+.|++.++ ..+++|+|+||+|++|++....+ +.++||++|++|+|||||+|+|+... .
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~~----~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~ 77 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDGE----VDRVIDAGNALVGPGFIDLDALSDLDTTILGLDN 77 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCCC----CCeEEeCCCCEEecCEEeeecccchhhhhccccc
Confidence 57899999976543 34789999999999999854321 46899999999999999999996410 0
Q ss_pred C------CCCC---------------Ch----hHHHHHHHhCCceEEEeCCCCCCCCC-CCHHHHHHHHHHHhc-Cceee
Q 010547 112 R------TEWE---------------GF----PSGTKAAAAGGITTLIDMPLNSDPST-ISTETLKLKVDAAEK-RIYVD 164 (507)
Q Consensus 112 ~------~~~~---------------~~----~~~~~~~l~~GvTt~~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~ 164 (507)
. ..|. .+ ...+.+++++||||++++.....+.. ..........++... +....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~ 157 (488)
T PRK06151 78 GPGWAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVY 157 (488)
T ss_pred chhHHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEE
Confidence 0 0000 00 12345789999999998641111111 111122222222222 11111
Q ss_pred EEE--ec-cc--------cC--CC---c----ccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 010547 165 VGF--WG-GL--------VP--EN---A----YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224 (507)
Q Consensus 165 ~~~--~~-~~--------~~--~~---~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 224 (507)
.+. .. +. .. .. . ...+.++++...|...++....+ ......+++.+.++++.|+++|
T Consensus 158 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p---~~~~~~s~e~l~~~~~~A~~~g 234 (488)
T PRK06151 158 LGPAYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAP---DRIETCTVDLLRRTAAAARELG 234 (488)
T ss_pred ecchhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcC---CCCCCCCHHHHHHHHHHHHHCC
Confidence 110 00 00 00 00 0 01122333333455445554332 2334689999999999999999
Q ss_pred CcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH----
Q 010547 225 RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS---- 300 (507)
Q Consensus 225 ~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~---- 300 (507)
.++.+|+.+.......+.... . ...++...+.+. .+.++.+.|+...+.
T Consensus 235 ~~v~~H~~e~~~~~~~~~~~~-------------------g----~~~~~~~~~~g~----l~~r~~l~H~~~l~~~~~~ 287 (488)
T PRK06151 235 CPVRLHCAQGVLEVETVRRLH-------------------G----TTPLEWLADVGL----LGPRLLIPHATYISGSPRL 287 (488)
T ss_pred CcEEEEECCchHHHHHHHHHc-------------------C----CCHHHHHHHcCC----CCCCcEEEEEEEcCCcccc
Confidence 999999943221000000000 0 011222222210 144566666654211
Q ss_pred ---HHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhh
Q 010547 301 ---SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 377 (507)
Q Consensus 301 ---~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~ 377 (507)
..+.++.+++.|+.+. +||... . . ......++.++++.|+.+++|||..+.++...
T Consensus 288 ~~~~~~~~~~la~~g~~v~--~~P~~~------~-~------------~g~~~~p~~~l~~~Gv~v~lGtD~~~~~~~~~ 346 (488)
T PRK06151 288 NYSGGDDLALLAEHGVSIV--HCPLVS------A-R------------HGSALNSFDRYREAGINLALGTDTFPPDMVMN 346 (488)
T ss_pred ccCCHHHHHHHHhcCCEEE--ECchhh------h-h------------hccccccHHHHHHCCCcEEEECCCCCccHHHH
Confidence 1267888888887654 355310 0 0 01122345678889999999999754332211
Q ss_pred ccccCCccccCCCCchhhhHHHHHHHHHHh---cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEe
Q 010547 378 LLDEGNFLKAWGGISSLQFVLPVTWSYGRK---YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 454 (507)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~ 454 (507)
+ .+......... ..++++++++++|.|||+++|++++|+|++|+.|||+++|.+.....
T Consensus 347 ~------------------~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvvld~~~~~~~ 408 (488)
T PRK06151 347 M------------------RVGLILGRVVEGDLDAASAADLFDAATLGGARALGRDDLGRLAPGAKADIVVFDLDGLHMG 408 (488)
T ss_pred H------------------HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCcCCEEEEeCCccccC
Confidence 1 01111111122 23799999999999999999995589999999999999997653221
Q ss_pred CCCCCcccCCCCCccccCcEEe---eEEEEEEECCEEEEecCcccCCCCCc
Q 010547 455 DNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAPAACGS 502 (507)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G~~v~~~g~~~~~~~~~ 502 (507)
+ . .+|+..+... ..|..|||+|++||++|+++..+..+
T Consensus 409 ~-~---------~d~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~ 449 (488)
T PRK06151 409 P-V---------FDPIRTLVTGGSGRDVRAVFVDGRVVMEDGRLPGVDLAA 449 (488)
T ss_pred C-c---------cCHHHHHHhhCCCCCccEEEECCEEEEECCeecCCCHHH
Confidence 1 1 2233322222 36999999999999999998766543
|
|
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=275.43 Aligned_cols=343 Identities=21% Similarity=0.230 Sum_probs=204.2
Q ss_pred cceEEEEecEEECCCC-ceeeeEEEeCCEEEEeecCC-CCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCC--
Q 010547 42 YNQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEE-DWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG-- 117 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~-~~~~~I~I~dG~I~~Vg~~~-~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~-- 117 (507)
...+++.+++.++.-+ ++++.|+|+||||+.|++.. ..+ .+.++||++|++|+|||||+|+|+...+....+.
T Consensus 9 ~~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~---~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~~~~ 85 (406)
T COG1228 9 IAMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIP---AGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFEL 85 (406)
T ss_pred hhhheeeccccCCCcceeecceEEEECCEEEEecCcccCCC---CCCeEEeCCCCEEccceeeccccccccCCccchhhh
Confidence 4556788889888544 56799999999999999884 333 3789999999999999999999998753331110
Q ss_pred -----------------------------------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCce
Q 010547 118 -----------------------------------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY 162 (507)
Q Consensus 118 -----------------------------------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 162 (507)
.......++++|+|+.-... ........................
T Consensus 86 ~~~~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~-~~g~~~~~e~~~~~~~~~~~~~~~ 164 (406)
T COG1228 86 REAGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKS-GYGLDLETEGGHLRAAAGLKESRP 164 (406)
T ss_pred cccCccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceee-eecccccccccccchhhhcccccc
Confidence 01112344667777755432 111111111111111111111111
Q ss_pred eeEEEec-cccCCCc---ccH----H---H-HHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEe
Q 010547 163 VDVGFWG-GLVPENA---YNA----S---A-LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (507)
Q Consensus 163 ~~~~~~~-~~~~~~~---~~~----~---~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 230 (507)
+.+.... .....++ ... . . +......|...... .....+..++++++++++.|++.+.++.+|
T Consensus 165 ~~~~~t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d-----~~~~~~~fs~~e~~~~l~~a~~~g~~v~~H 239 (406)
T COG1228 165 VAVGSTPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVD-----AFCEGGQFSPEEIRAVLAAALKAGIPVKAH 239 (406)
T ss_pred ccccCccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhh-----ccccccccCHHHHHHHHHHHHHCCCceEEE
Confidence 1111100 0111111 111 1 1 22222223222221 013445789999999999999999999999
Q ss_pred cCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHh
Q 010547 231 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 310 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~ 310 (507)
++..+. +.-.+++.. ..+.|... -..+-++.+++
T Consensus 240 A~~~~g--------------------------------~~~A~~~g~------------~s~~H~~~--ld~~~~~~~a~ 273 (406)
T COG1228 240 AHGADG--------------------------------IKLAIRLGA------------KSAEHGTL--LDHETAALLAE 273 (406)
T ss_pred ecccch--------------------------------HHHHHHhCc------------ceehhhhh--cCHhHHHHHhh
Confidence 965432 122222211 12344433 11223334444
Q ss_pred --CCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccC
Q 010547 311 --NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 388 (507)
Q Consensus 311 --~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~ 388 (507)
.|.++ ....|... +.. .......+..++++|++++++||+.+.....
T Consensus 274 ~~~g~~~-~~l~p~~~-------------~~l-----~e~~~~~~~~l~~~GV~vai~TD~~~~~~~~------------ 322 (406)
T COG1228 274 KGAGTPV-PVLLPRTK-------------FEL-----RELDYKPARKLIDAGVKVAIGTDHNPGTSHG------------ 322 (406)
T ss_pred ccCCCcc-ccccchhh-------------hhh-----hcccchhHHHHHHCCCEEEEEcCCCCCchhh------------
Confidence 44321 11111100 000 1223345678899999999999998776311
Q ss_pred CCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCC
Q 010547 389 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467 (507)
Q Consensus 389 ~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~ 467 (507)
.+...+..+.+.+||++||++++|.|||++||+ +++|+||+||+||||+||.|+..++. +....
T Consensus 323 --------~l~~~m~l~~~~gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~----y~~~~--- 387 (406)
T COG1228 323 --------SLALEMALAVRLGMTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIP----YFLGL--- 387 (406)
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhcc----ccccC---
Confidence 145556667777899999999999999999999 88999999999999999999866541 11111
Q ss_pred ccccCcEEeeEEEEEEECCEEEEecCc
Q 010547 468 SAYLGRRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 468 ~~~~~~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
..|..||.+|+++|+.+.
T Consensus 388 ---------~~v~~v~k~G~~~~~~~~ 405 (406)
T COG1228 388 ---------NKVEAVIKDGKVVYERGS 405 (406)
T ss_pred ---------CceEEEEECCEEeecCCC
Confidence 269999999999997653
|
|
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=269.30 Aligned_cols=359 Identities=21% Similarity=0.242 Sum_probs=229.9
Q ss_pred cceEEEEecEEECC-CCceeeeEEEeCCEEEEeecCCCCCCC---------CCCCcEEecCCCEEecceeecccccCCCC
Q 010547 42 YNQYWLTSKRIVTP-KGVISGAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (507)
Q Consensus 42 ~~~~~i~n~~i~~~-~~~~~~~I~I~dG~I~~Vg~~~~~~~~---------~~~~~viD~~g~~v~PGfID~H~H~~~~~ 111 (507)
..+++|+|++|+|+ .++..++|.|+||||++|++...+... ..+.++||++|++|+|||||+|+|+..+.
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P~ 146 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISPQ 146 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCcc
Confidence 56799999999996 567789999999999999975432100 01368999999999999999999987654
Q ss_pred CCCCCChhHHHHHHHhCCceEEEeCCCC------CCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHH
Q 010547 112 RTEWEGFPSGTKAAAAGGITTLIDMPLN------SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (507)
Q Consensus 112 ~~~~~~~~~~~~~~l~~GvTt~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (507)
. .+.++.+||||++..+++ +.+.......+....+.++. ..+++.+++.. .......+.++
T Consensus 147 ~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~-~pvn~g~~gkg---~~~~~~~l~el 213 (572)
T PRK13309 147 Q---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEG-LPVNVGILGKG---NSYGRGPLLEQ 213 (572)
T ss_pred h---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhcc-CCcCEEEEcCC---CCCCHHHHHHH
Confidence 2 268999999999975311 11223345567777666663 35777776532 22334667788
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHH
Q 010547 186 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (507)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (507)
.+.|+.+++.+.. +..+++.+.++++.|++++.++.+|++....
T Consensus 214 ~~aGa~gfk~~~d-------~g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE----------------------------- 257 (572)
T PRK13309 214 AIAGVAGYKVHED-------WGATAAALRHALRVADEVDIQVAVHTDSLNE----------------------------- 257 (572)
T ss_pred HhcCcEEEEecCc-------CCcCHHHHHHHHHHHHhcCCEEEEeCCcccc-----------------------------
Confidence 8999999998532 2358899999999999999999999976432
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCC----CCCcee
Q 010547 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFK 339 (507)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~----~~~~~~ 339 (507)
...++..+... .+.++|..|...+- ...+.++.+...++..+ .+.| ...++.+.+.. .-....
T Consensus 258 ~g~vE~~~aa~---------~grpih~~H~~Gaggghapd~~~~~~~~~~~~~-st~p-t~p~~~~~~~e~~~m~m~~h~ 326 (572)
T PRK13309 258 CGYVEDTIDAF---------EGRTIHTFHTEGAGGGHAPDIIKVASQTNVLPS-STNP-TLPYGVNSQAELFDMIMVCHN 326 (572)
T ss_pred chhHHHHHHHh---------CCCceeeeeccCcccCCchhHHHhcCCCCcccC-CCCC-CCCCcccchHhhhchhhhhcc
Confidence 11223333332 28889999997541 22334444433333211 1122 22233332222 122222
Q ss_pred EcCCCCC----------hhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-----
Q 010547 340 CAPPIRD----------AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY----- 404 (507)
Q Consensus 340 ~~p~~~~----------~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 404 (507)
.+|.+.. .........+++.|+.++++||+...... +...+........+.
T Consensus 327 l~~~~~~D~~~a~srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~--------------~~~p~~~iq~Av~rk~~~g~ 392 (572)
T PRK13309 327 LNPNVPADVAFAESRVRPETIAAENVLHDMGVISMFSSDSQAMGRV--------------GENWLRAIQTADAMKAARGK 392 (572)
T ss_pred CCCCCCCChhHHHHhhCchhhcchhHHHhCCCEEEEcCCCCcccCC--------------cccHHHHHHHHHHHHhccCC
Confidence 2333211 11123345667789999999997642100 000000000000000
Q ss_pred -----HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeE
Q 010547 405 -----GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 478 (507)
Q Consensus 405 -----~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
.....+++.+++++.|.|||+++|+ +++|+|++||.|||+|||.+.. .. +
T Consensus 393 l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f-----------~~-------------~ 448 (572)
T PRK13309 393 LPEDAAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFF-----------GA-------------K 448 (572)
T ss_pred CCccCCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhc-----------CC-------------C
Confidence 0012377889999999999999999 7899999999999999996521 11 4
Q ss_pred EEEEEECCEEEEec-CcccCC
Q 010547 479 VLATISRGNLVYKE-GNHAPA 498 (507)
Q Consensus 479 V~~v~v~G~~v~~~-g~~~~~ 498 (507)
+..||++|+++|.. |....+
T Consensus 449 ~~~vi~~G~iv~~~~gd~~as 469 (572)
T PRK13309 449 PKMVIKGGMINWAAMGDPNAS 469 (572)
T ss_pred ccEEEECCEEEEecCCCcccc
Confidence 68999999999988 766543
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=275.14 Aligned_cols=379 Identities=15% Similarity=0.120 Sum_probs=219.8
Q ss_pred EEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC-------
Q 010547 45 YWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------- 113 (507)
Q Consensus 45 ~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~------- 113 (507)
++|+|++|++.++ ..+++|+|+||+|++|++..+....+.+.++||++|++|+|||||+|+|+......
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~ 80 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP 80 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence 4789999997543 34789999999999999864332222356899999999999999999999643110
Q ss_pred ---CC-----------------CCh----hHHHHHHHhCCceEEEeCCCCCCC-CCCCHHHHHHHHHHHhcCceeeEEEe
Q 010547 114 ---EW-----------------EGF----PSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEKRIYVDVGFW 168 (507)
Q Consensus 114 ---~~-----------------~~~----~~~~~~~l~~GvTt~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (507)
++ +.+ ...+.+++++||||++|+. .+.. .....+.+.+.......+..+.+...
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~-~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 159 (441)
T TIGR03314 81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHH-ASPNAITGSLSTIRKAADEAGLRTMLCYETS 159 (441)
T ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecc-cccccccchHHHHHHHHHHhCCeEEEeeeee
Confidence 00 000 1123457899999999984 1111 11122333333332222333322221
Q ss_pred ccccCCC-cccHHHHHHHHH--cCC--cEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhh
Q 010547 169 GGLVPEN-AYNASALEALLN--AGV--LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVK 242 (507)
Q Consensus 169 ~~~~~~~-~~~~~~~~~~~~--~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~ 242 (507)
....... .+..+...++.+ .+. .-+...+.+ +....++++.++++.+.|++++.++++|+.+... +.....
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p---~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~ 236 (441)
T TIGR03314 160 DRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGA---HAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHH 236 (441)
T ss_pred cCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEec---CCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH
Confidence 1000000 111111222211 111 113333332 3345689999999999999999999999854322 111111
Q ss_pred cccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccc
Q 010547 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~ 322 (507)
..+ ..-++.+.+.+ ..+.++.+.|+.+- +.+.++.+.+.|+.+.. ||.
T Consensus 237 ~~g------------------------~~~~~~l~~~G----~l~~~~~~~H~~~~--~~~d~~~la~~g~~v~~--cP~ 284 (441)
T TIGR03314 237 KYG------------------------KDIVERLADFG----LLGSKTLAAHCIYL--SDREIELLNETDTFVVH--NPE 284 (441)
T ss_pred HcC------------------------CCHHHHHHHCC----CCCCCeEEEEEecC--CHHHHHHHHHcCCcEEE--CHH
Confidence 000 01112222221 11556777777763 33467777778876543 663
Q ss_pred cccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH
Q 010547 323 YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (507)
. +. . ......++.++++.|+.++||||+.+.++...+. +..+.
T Consensus 285 s------n~-------~------l~~G~~p~~~~~~~Gv~v~LGtD~~~~d~~~em~------------------~a~~~ 327 (441)
T TIGR03314 285 S------NM-------G------NAVGYNPVLRMFKNGILLGLGTDGYTSDMFESLK------------------FANFK 327 (441)
T ss_pred H------Hh-------h------hccCCCCHHHHHHCCCEEEEcCCCCCcCHHHHHH------------------HHHHH
Confidence 1 11 0 0111224567888999999999986554433211 11111
Q ss_pred HHHH--hcCCCHHHHHHHHhhchhHHhC--C-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee
Q 010547 403 SYGR--KYGVTLEQLASWWSERPAKLAG--Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477 (507)
Q Consensus 403 ~~~~--~~gls~~~al~~~T~n~A~~lg--l-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (507)
.... +....+.++++++|.|+|+++| + .+.|+|++||.|||+++|.+.++..+.. ++. ..++.+.. .+
T Consensus 328 ~~~~~~~~~~~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~-~~~-----~~lv~~~~-~~ 400 (441)
T TIGR03314 328 HKDAGGDLNAAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTAD-NIN-----GHILFGMN-GG 400 (441)
T ss_pred hccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechh-hcc-----ccceecCC-CC
Confidence 1111 1122357899999999999997 3 4689999999999999998877655422 110 11222222 46
Q ss_pred EEEEEEECCEEEEecCcccCCCCCcc
Q 010547 478 KVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 478 ~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
.|..|||+|++||++|+++..+..+.
T Consensus 401 ~V~~v~V~G~~v~~~~~~~~~d~~~i 426 (441)
T TIGR03314 401 SVDSTMVNGKVVMEDREFLHFDEAPI 426 (441)
T ss_pred eeEEEEECCEEEEECCcccccCHHHH
Confidence 89999999999999999987766543
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=259.42 Aligned_cols=360 Identities=21% Similarity=0.235 Sum_probs=223.0
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCc-EEecCCCEEecceeecccccCCCCCCCC---CChhH
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQ-VVDYGEAVIMPGLIDVHAHLDDPGRTEW---EGFPS 120 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~-viD~~g~~v~PGfID~H~H~~~~~~~~~---~~~~~ 120 (507)
++|+|++|++++.....+|+|+||||++|++..+.+..+.+.+ ++|++|++|+|||||+|+|+..++.... .....
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 5899999999977677899999999999998765432222334 5566999999999999999865421111 12333
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc-----ccHHHHHHHHHcCCcEEE-
Q 010547 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA-----YNASALEALLNAGVLGLK- 194 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~- 194 (507)
.+.+++++||||++++. ++.......+.+....++...-....+... +....+. ....++.. ..-+.|++
T Consensus 82 ~~~e~l~~GvTTv~d~~-g~~~~~~~~~~~~a~~~al~~~Gir~~~~~-g~~~~p~~t~t~~~~~d~~~--~d~iiG~~~ 157 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLL-GTDGITRHMESLLAKARALEEEGISCYMLT-GAYHVPSRTITGSVESDLLL--IDKVIGVGE 157 (389)
T ss_pred HHHHHHhCCcEEEecCc-ccCccccChhhHHHHHHHHHHhCCEEEEEc-ccccCCCcccccchhhheee--ehhhcccce
Confidence 57788999999999886 544444444433444444443222222211 1111110 11111110 12233443
Q ss_pred EcccCCCCCCCCCCCHHHHHHHHHHHHhcC----Cc--EEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 195 SFMCPSGINDFPMTNASHIKEGLSVLARYK----RP--LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~----~~--v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
.-+.. +....++.+++.++.+.++..+ ++ +.+|.-+. ...
T Consensus 158 ia~sd---~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~-------------------------------~~~ 203 (389)
T TIGR01975 158 IAISD---HRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDS-------------------------------KRA 203 (389)
T ss_pred EEEcc---CcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc-------------------------------hhh
Confidence 22211 2224578899999999999988 88 99998432 224
Q ss_pred HHHHHHHHHhhccCCCCCCceEE---EEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCC
Q 010547 269 IRELLTVAKDTRTDGPAEGAHLH---IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 345 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~~---~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 345 (507)
++.++++.++. ..+.| -.|+.....-.+...++.++|..+..........+. . .
T Consensus 204 l~~l~~~~~~~-------di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~-------------~---~ 260 (389)
T TIGR01975 204 LQPIYELVENT-------DVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRK-------------E---G 260 (389)
T ss_pred HHHHHHHHHhc-------CCChhheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchh-------------c---c
Confidence 56666666654 33333 335543324555555555666555443211000000 0 0
Q ss_pred ChhhHHHHHHHHhcCCe---eEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 010547 346 DAANKEKLWEALMDGHI---DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 422 (507)
Q Consensus 346 ~~~~~~~~~~~l~~G~~---~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n 422 (507)
.....+.+.+++++|+. ++++||...+.+..+. .|.+. ..++.++...+..+.......+++++++++++|.|
T Consensus 261 ~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~--~g~~~--~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~n 336 (389)
T TIGR01975 261 EVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDE--NGELT--GLGVGSFETLFEEVREAVKDGDVPLEKALRVITSN 336 (389)
T ss_pred ccChHHHHHHHHHcCCCcceEEEEeCCCCCCCcccc--ccccc--cCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12234456788899986 4999997532111110 11111 23555665555544444455569999999999999
Q ss_pred hhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCccc
Q 010547 423 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496 (507)
Q Consensus 423 ~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~ 496 (507)
||++||++++|+|++|++|||+++|.+. .+..||.+|++++++|++.
T Consensus 337 pA~~Lgl~~~G~I~~G~~ADlvild~~~---------------------------~i~~v~~~G~~v~~~g~~~ 383 (389)
T TIGR01975 337 VAGVLNLTGKGEISPGNDADLVVLDPDL---------------------------RIHSVIARGKLMVKDGKAC 383 (389)
T ss_pred HHHHhCCCCCCeECCCCcCCEEEEcCCC---------------------------CEEEEEECCEEEEECCEEE
Confidence 9999999668999999999999999651 5788999999999999986
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=263.15 Aligned_cols=361 Identities=21% Similarity=0.260 Sum_probs=214.9
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---CCCChhH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPS 120 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---~~~~~~~ 120 (507)
.++|+|++|++++...+++|+|+||+|++|++..+.+..+.+.++||++|++|+|||||+|+|+...... ...+...
T Consensus 2 ~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~ 81 (388)
T PRK10657 2 FTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEV 81 (388)
T ss_pred eEEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHH
Confidence 4789999999988766789999999999998764332222356899999999999999999998732111 1123456
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc-----ccHHHHHHHHHcCCcEE-E
Q 010547 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA-----YNASALEALLNAGVLGL-K 194 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~-~ 194 (507)
.++.++++||||+++++ +..+.....+.+....+.+...+...+...+ ....+. ...+.+. .. ....++ +
T Consensus 82 ~~~~~~~~GvTTvvd~~-~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~~~g~g~ 157 (388)
T PRK10657 82 QLSDLTEAGITTVVGLL-GTDGITRSMESLLAKARALEEEGISAYMYTG-SYHVPVRTITGSIRKDIV-LI-DKVIGVGE 157 (388)
T ss_pred HHHHHHhCCceEEECCC-CCCCCCCCHHHHHHHHHHHHhhCCEEEEEec-CCCCCchhhhcchhhcee-hh-hhhhCcce
Confidence 77888999999999987 4433333344444444433322222221211 111111 0001110 00 001111 1
Q ss_pred EcccCCCCCCCCCCCHHHHHHHHHHHHhcCC------cEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~------~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
....+ ......+.+++.++.+.++..+. ++.+|+.... ..
T Consensus 158 ~~~~~---~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~-------------------------------~~ 203 (388)
T PRK10657 158 IAISD---HRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGK-------------------------------KG 203 (388)
T ss_pred eeecc---CCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCch-------------------------------HH
Confidence 10000 11123477777777766665433 6788863211 11
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh-
Q 010547 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA- 347 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 347 (507)
++.+.++..+.+. ....++..|+.......+...+..++|..+.+.. .+|+++..
T Consensus 204 l~~v~~~l~~~Gv----~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~--------------------~~~~~~~~~ 259 (388)
T PRK10657 204 LQPLFELLENTDI----PISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTT--------------------SDPDFLGEG 259 (388)
T ss_pred HHHHHHHHHhcCC----CcceeeCcccCCCHHHHHHHHHHHHcCCeEEEec--------------------CCCcccccC
Confidence 2222222222110 0123455665532133344555555565443321 12222222
Q ss_pred --hhHHHHHHHHhcCC---eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 010547 348 --ANKEKLWEALMDGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 422 (507)
Q Consensus 348 --~~~~~~~~~l~~G~---~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n 422 (507)
...+.+++++++|. .++++||+...... ....|.+ .+.+..++...+..+.......++|++++++++|.|
T Consensus 260 ~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~--~~~~g~~--~~~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~n 335 (388)
T PRK10657 260 EVAPAEALKRALEAGVPLSRVTLSSDGNGSLPK--FDEDGNL--VGLGVGSVESLLEEVRELVKDEGLPLEDALKPLTSN 335 (388)
T ss_pred ccCHHHHHHHHHHcCCChhheEEECCCCCCCce--eccCCCE--eccCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34577889999998 67999997543321 1111212 234556666666666655567899999999999999
Q ss_pred hhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC
Q 010547 423 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 423 ~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~ 497 (507)
||+++|++++|+|++|+.|||+++| ++ . .|..||++|++|+++|+++.
T Consensus 336 pA~~lg~~~~G~l~~G~~AD~vv~~-~~--------~------------------~~~~~~~~G~~v~~~~~~~~ 383 (388)
T PRK10657 336 VARFLKLNGKGEILPGKDADLLVLD-DD--------L------------------RIEQVIAKGKLMVKDGKALV 383 (388)
T ss_pred HHHHhCCCCCCccCCCCccCEEEEC-CC--------C------------------CEEEEEECCEEEEECCEEec
Confidence 9999999448999999999999999 32 0 58999999999999999865
|
|
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=263.31 Aligned_cols=321 Identities=18% Similarity=0.211 Sum_probs=243.9
Q ss_pred ecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCc-eeeEEEeccccCCC
Q 010547 97 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPEN 175 (507)
Q Consensus 97 ~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 175 (507)
+||+||+|+|+..+ +++....+.|.++| |++++++ ++.|.....+.+......+.... +.++..++++....
T Consensus 3 ~Pg~iD~h~h~~~~-----~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 75 (335)
T cd01294 3 IPRPDDMHLHLRDG-----AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLTE 75 (335)
T ss_pred CCCcceeEecCCCc-----hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEeccC
Confidence 79999999999874 67889999999999 9999999 77777777776666665555544 45666555553233
Q ss_pred cccHHHHHHHHHc-CCcEEEEcccCCCC-CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcccc
Q 010547 176 AYNASALEALLNA-GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253 (507)
Q Consensus 176 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 253 (507)
....++++++.+. |+.++|.|+..... .+....+.+.+..+++.+++.|.++.+|+++.....
T Consensus 76 ~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~--------------- 140 (335)
T cd01294 76 NTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI--------------- 140 (335)
T ss_pred CCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc---------------
Confidence 3346788888876 99999998632111 112233568899999999999999999998754311
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC
Q 010547 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333 (507)
Q Consensus 254 ~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~ 333 (507)
.+...+.+.+.+...++++ .++.++|+.|+++. ++++.++.+++ ++++++||||+.++.+.+..
T Consensus 141 ------~~~~~e~~~~~~~~~lA~~------~p~~~v~i~Hvst~-~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~~ 204 (335)
T cd01294 141 ------DVLDREAKFIPVLEPLAQR------FPKLKIVLEHITTA-DAVEYVKSCNE---NVAATITPHHLLLTRDDLLG 204 (335)
T ss_pred ------cchhhHHHHHHHHHHHHHH------cCCCeEEEecccHH-HHHHHHHhCCC---CcEEEEchhHheeeHHHhcC
Confidence 0111233445667777775 34889999999998 99999987765 78999999999999998865
Q ss_pred --CCCceeEcCCCCChhhHHHHHHHHhcCCee-EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCC
Q 010547 334 --GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 410 (507)
Q Consensus 334 --~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~-~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gl 410 (507)
.+..++++||+|...+++.+++++.+|.++ +++|||+|+...+|. .++. ..|+.+++..++.++.... .++
T Consensus 205 ~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~---~~~g--~~Gi~~~~~~l~~~~~~~~-~~l 278 (335)
T cd01294 205 GGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKE---SSCG--CAGIFSAPIALPYLAEVFE-EHN 278 (335)
T ss_pred CCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCcccc---CCCC--CccccCHHHHHHHHHHHHh-ccC
Confidence 588999999999999999999999999999 599999999877663 1222 2366666667777764444 589
Q ss_pred CHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCc
Q 010547 411 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR 473 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (507)
++++++++.+.|||++||+ +.+|+ |++++ ..|.++.. .+.++.. ++||+|-
T Consensus 279 ~l~~~v~~~s~nPA~i~gl~~~kg~--------i~~~~--~~~~v~~~-~~~s~~~-~sp~~g~ 330 (335)
T cd01294 279 ALDKLEAFASDNGPNFYGLPPNKKT--------ITLVK--EPWKVPEK-IPFGNNG-VVPFRAG 330 (335)
T ss_pred CHHHHHHHHHhHHHHHhCCCCCCCe--------EEEEe--eceEcCch-hccCCCc-eecccCC
Confidence 9999999999999999999 65555 55554 66777766 7778888 8888864
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=270.48 Aligned_cols=380 Identities=17% Similarity=0.170 Sum_probs=217.4
Q ss_pred ceEEEEecE-EECCCC----ceee-eEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC--
Q 010547 43 NQYWLTSKR-IVTPKG----VISG-AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-- 114 (507)
Q Consensus 43 ~~~~i~n~~-i~~~~~----~~~~-~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~-- 114 (507)
.+++|+|++ |++.+. +.++ +|+|+||+|++|++... ++++++||++|++|+|||||+|+|+.......
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~----~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~ 77 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGALTP----LPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVP 77 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEeccCC----CCCCeEEeCCCCEEecCEeecccCcccccccccc
Confidence 568999996 677543 3454 89999999999998321 13679999999999999999999998531110
Q ss_pred ---------C--------CC----------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEE
Q 010547 115 ---------W--------EG----------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167 (507)
Q Consensus 115 ---------~--------~~----------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (507)
| +. ....+.+++++||||+.|+. .........+......++....+...+..
T Consensus 78 ~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~a~~~~G~R~~~~ 156 (457)
T PRK12393 78 AGINQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHH-YLYHPGMPFDTGDILFDEAEALGMRFVLC 156 (457)
T ss_pred cccCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecch-hhcccccccchHHHHHHHHHHcCCeEEEE
Confidence 0 00 12234567899999999874 11111122233333444343222211111
Q ss_pred ecccc------CC-----Cc----ccHHHHHHHHHc--C--CcE-EEEcccCCCCCCC-CCCCHHHHHHHHHHHHhcCCc
Q 010547 168 WGGLV------PE-----NA----YNASALEALLNA--G--VLG-LKSFMCPSGINDF-PMTNASHIKEGLSVLARYKRP 226 (507)
Q Consensus 168 ~~~~~------~~-----~~----~~~~~~~~~~~~--g--~~~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~a~~~~~~ 226 (507)
..... .. .. ...+..+++.+. + ..+ +...+.+ ... ..++++.++++.+.|++++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~l~~~~~~a~~~g~~ 233 (457)
T PRK12393 157 RGGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAP---TTPTFSLPPELLREVARAARGMGLR 233 (457)
T ss_pred ccccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcC---CCCCCCcCHHHHHHHHHHHHHcCCe
Confidence 11110 00 00 111222333221 1 101 1111221 111 357889999999999999999
Q ss_pred EEEecCCccc-chhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHH
Q 010547 227 LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL 305 (507)
Q Consensus 227 v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i 305 (507)
+.+|+.+... ++...... + .+-.+.+.+. +. .+.++.+.|+..- +.+.+
T Consensus 234 ~~~H~~e~~~~~~~~~~~~----------------g--------~~~~~~l~~~--g~--l~~~~~~~H~~~l--~~~d~ 283 (457)
T PRK12393 234 LHSHLSETVDYVDFCREKY----------------G--------MTPVQFVAEH--DW--LGPDVWFAHLVKL--DAEEI 283 (457)
T ss_pred EEEEeCCCHHHHHHHHHHh----------------C--------CCHHHHHHHc--CC--CCCCeEEEEEecC--CHHHH
Confidence 9999854221 11000000 0 0001111211 01 1445667777652 34466
Q ss_pred HHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCcc
Q 010547 306 MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 385 (507)
Q Consensus 306 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~ 385 (507)
+.+++.|+.+. +||..... .+ ....++.++++.|+.+++|||+.+.+...++
T Consensus 284 ~~la~~g~~v~--~~P~sn~~-------lg------------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~------- 335 (457)
T PRK12393 284 ALLAQTGTGIA--HCPQSNGR-------LG------------SGIAPALAMEAAGVPVSLGVDGAASNESADM------- 335 (457)
T ss_pred HHHHHcCCeEE--ECchhhhh-------hc------------ccCCCHHHHHHCCCeEEEecCCcccCCCccH-------
Confidence 77777787654 46631100 00 1123456788899999999997654321111
Q ss_pred ccCCCCchhhhHH-HHHHHHH--HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCccc
Q 010547 386 KAWGGISSLQFVL-PVTWSYG--RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462 (507)
Q Consensus 386 ~~~~~~~~~~~~l-~~~~~~~--~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~ 462 (507)
++... ..+.... ....++++++++++|.|||+++|++++|+|++|+.|||+++|.+.++..+..
T Consensus 336 --------~~~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~----- 402 (457)
T PRK12393 336 --------LSEAHAAWLLHRAEGGADATTVEDVVHWGTAGGARVLGLDAIGTLAVGQAADLAIYDLDDPRFFGLH----- 402 (457)
T ss_pred --------HHHHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCCCCCCcCCCCcCCEEEEeCCCcccCCCC-----
Confidence 11101 1111111 0124899999999999999999995589999999999999998875543221
Q ss_pred CCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 463 KHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 463 ~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
++...++... ..+.|..|||+|+++|++|+++..+.+..
T Consensus 403 -~~~~~~~~~~-~~~~v~~v~v~G~~v~~~~~~~~~d~~~i 441 (457)
T PRK12393 403 -DPAIAPVACG-GPAPVKALLVNGRPVVENGAIPGLDLAEL 441 (457)
T ss_pred -CchhhhhccC-CCCCeeEEEECCEEEEECCccCCCCHHHH
Confidence 1101122221 23579999999999999999987765543
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=261.84 Aligned_cols=358 Identities=21% Similarity=0.266 Sum_probs=225.7
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCC-------CCCCCcEEecCCCEEecceeecccccCCCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPR-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~-------~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~ 114 (507)
..+++|+|++|+++.++..++|.|+||||++|++...+.. ...+.++||++|++|+|||||+|+|+..+..
T Consensus 66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P~~-- 143 (568)
T PRK13207 66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICPQQ-- 143 (568)
T ss_pred cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccccH--
Confidence 4679999999999877788999999999999997532210 0125789999999999999999999876432
Q ss_pred CCChhHHHHHHHhCCceEEEeCCCCC----CCCCCC--HHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHc
Q 010547 115 WEGFPSGTKAAAAGGITTLIDMPLNS----DPSTIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 188 (507)
Q Consensus 115 ~~~~~~~~~~~l~~GvTt~~~~~~~~----~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (507)
.+.++++||||+++++.+. .+.... ...+....+..+ ...+++.+++.. .....+.+.++.+.
T Consensus 144 -------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~g---~~~~~~~L~e~i~a 212 (568)
T PRK13207 144 -------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGKG---NASLPEALEEQIEA 212 (568)
T ss_pred -------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcCC---CcccHHHHHHHHHc
Confidence 4788999999999974211 122111 233444444444 345667665422 23456788888999
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
|+.++|.+..+ ..+++.+.++++.|++++.++.+|++.... ...
T Consensus 213 GA~gfKi~~d~-------g~t~~~l~~aL~~A~~~gv~V~iHa~tlne-----------------------------~G~ 256 (568)
T PRK13207 213 GAIGLKLHEDW-------GATPAAIDNCLSVADEYDVQVAIHTDTLNE-----------------------------SGF 256 (568)
T ss_pred CCCEEeecCCC-------CCCHHHHHHHHHHHHHhCCEEEEeCCCccc-----------------------------chH
Confidence 99999986422 358899999999999999999999965432 111
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCC
Q 010547 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (507)
++..+.... +..+|..|...+. -..+.++.+...++-.+ .+.| ...++.+.+...-...+.+..+..
T Consensus 257 ~e~t~~a~~---------g~~iH~~H~egaggghapdii~~~~~~~v~p~-st~p-t~p~~~~~~~e~~~m~m~~h~l~~ 325 (568)
T PRK13207 257 VEDTIAAFK---------GRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPS-STNP-TRPYTVNTIDEHLDMLMVCHHLDP 325 (568)
T ss_pred HHHHHHhcC---------CCEEEEEeecCCCcCCchHHHHHhhcCCCccC-CCCC-CCCCccCchhhhcCeEEeecCCCC
Confidence 233444433 7789999987321 23455566655554322 2222 233344444333223333322210
Q ss_pred --hhhHH---------HH---HHHHhcCCeeEEeCCCCCCCh-hhhccccCCccccCCCCchhhhHHHHHHHHHHhcC-C
Q 010547 347 --AANKE---------KL---WEALMDGHIDMLSSDHSPTVP-ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-V 410 (507)
Q Consensus 347 --~~~~~---------~~---~~~l~~G~~~~lgtD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-l 410 (507)
+++.. .+ --+...|+..+++||+..... .. ..+.. +..........| +
T Consensus 326 ~~~~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~~---------------~~~r~-~q~A~~r~~~~G~~ 389 (568)
T PRK13207 326 SIPEDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAMGRVGE---------------VIIRT-WQTAHKMKVQRGPL 389 (568)
T ss_pred CCcchhhhhhhhccceeecccchhhhCCCEEEecCCccccccccc---------------chhHH-HHHHHHHHHccCCC
Confidence 11110 01 113556999999999764311 00 00000 000000000111 1
Q ss_pred -------CHHHH---HHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEE
Q 010547 411 -------TLEQL---ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479 (507)
Q Consensus 411 -------s~~~a---l~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 479 (507)
+.+.+ ++++|.|||+++|+ +.+|+|++||.||||+|+.+. +.. .+
T Consensus 390 ~~d~~~~~n~ri~~~l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~----------f~~--------------~~ 445 (568)
T PRK13207 390 PGDSGRNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAF----------FGV--------------KP 445 (568)
T ss_pred CcccccCccchHHHHHHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchh----------cCC--------------Cc
Confidence 11222 99999999999999 668999999999999999542 111 36
Q ss_pred EEEEECCEEEEec-CcccCCC
Q 010547 480 LATISRGNLVYKE-GNHAPAA 499 (507)
Q Consensus 480 ~~v~v~G~~v~~~-g~~~~~~ 499 (507)
..||++|+++|.. |....+.
T Consensus 446 ~~ti~~G~iv~~~~gd~~as~ 466 (568)
T PRK13207 446 ELVLKGGMIAWAPMGDPNASI 466 (568)
T ss_pred eEEEECCEEEEecCCCccccC
Confidence 7899999999987 7665433
|
|
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=269.93 Aligned_cols=366 Identities=16% Similarity=0.134 Sum_probs=214.3
Q ss_pred eEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC------C-
Q 010547 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------E- 114 (507)
Q Consensus 44 ~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~------~- 114 (507)
+++|+|++|++++. ..+++|+|+||+|++|++....+ +.++||+.|++|+|||||+|+|+...... +
T Consensus 2 ~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~~----~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l 77 (424)
T PRK08393 2 SILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKP----ADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPL 77 (424)
T ss_pred eEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCCC----CCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCH
Confidence 58999999999887 34789999999999998754322 46799999999999999999998642110 0
Q ss_pred --C--------------CC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC
Q 010547 115 --W--------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 174 (507)
Q Consensus 115 --~--------------~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (507)
| +. ....+.+++++||||+.++. . ..+...+.......+..+.+.... ...
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~------~~~~~~~a~~~~G~r~~~~~~~~~--~~~ 148 (424)
T PRK08393 78 MEWLQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMY-F------HMEEVAKATLEVGLRGYLSYGMVD--LGD 148 (424)
T ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccc-c------CHHHHHHHHHHhCCeEEEeceEec--CCC
Confidence 0 01 11234567899999999874 1 122232222222222222211110 011
Q ss_pred CcccHHHHHH---HHH----cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccC
Q 010547 175 NAYNASALEA---LLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDD 246 (507)
Q Consensus 175 ~~~~~~~~~~---~~~----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~ 246 (507)
+....+.+++ ..+ .+...+...+.+ .....++++.++++++.|++++.++.+|+.+... +.......+
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p---~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g- 224 (424)
T PRK08393 149 EEKREKEIKETEKLMEFIEKLNSPRVHFVFGP---HAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYG- 224 (424)
T ss_pred ccchHHHHHHHHHHHHHHhcCCCCceEEEEeC---CcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC-
Confidence 1111122221 111 122112221211 2223578999999999999999999999854321 110000000
Q ss_pred cCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccc
Q 010547 247 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326 (507)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~ 326 (507)
..-.+.+.+.+ ..+.++.+.|+... +.+.++.+++.|+.+. +||..-..
T Consensus 225 -----------------------~~~~~~l~~~G----~l~~~~~~~H~~~l--~~~~l~~la~~g~~v~--~~P~sn~~ 273 (424)
T PRK08393 225 -----------------------KSPVVLLDEIG----FLNEDVIAAHGVWL--SSRDIRILASAGVTVA--HNPASNMK 273 (424)
T ss_pred -----------------------cCHHHHHHHcC----CCCCCcEEEEeecC--CHHHHHHHHhcCCEEE--ECHHHHHh
Confidence 00112222211 01455666776652 3356777778886554 46631000
Q ss_pred cccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhH-HHHHHHHH
Q 010547 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG 405 (507)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~ 405 (507)
+ + ....++.++++.|+.+++|||...++...++ ++.. +.......
T Consensus 274 ----l---g------------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~---------------~~~~~~a~~~~~~ 319 (424)
T PRK08393 274 ----L---G------------SGVMPLRKLLNAGVNVALGTDGAASNNNLDM---------------LREMKLAALLHKV 319 (424)
T ss_pred ----h---c------------cCCCCHHHHHHCCCcEEEecCCCccCCchhH---------------HHHHHHHHHHHhh
Confidence 0 0 1122456778899999999997643221111 1110 11111111
Q ss_pred Hh---cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE---eeEE
Q 010547 406 RK---YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKV 479 (507)
Q Consensus 406 ~~---~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~V 479 (507)
.. ..++++++++++|.|||+++|++ .|+|++||+||||++|.+.+...+. .+|+..+.. .+.|
T Consensus 320 ~~~~~~~~~~~~al~~aT~~~A~~lg~~-~G~l~~G~~ADlvvld~~~~~~~~~----------~~~~~~~~~~~~~~~v 388 (424)
T PRK08393 320 HNLDPTIADAETVFRMATQNGAKALGLK-AGVIKEGYLADIAVIDFNRPHLRPI----------NNPISHLVYSANGNDV 388 (424)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHhCCC-CCccCCCCccCEEEEeCCCCCcCCC----------CChHHHeeeeCCCCCe
Confidence 11 12578999999999999999995 6999999999999999886543322 222322222 2579
Q ss_pred EEEEECCEEEEecCcccCCCCCc
Q 010547 480 LATISRGNLVYKEGNHAPAACGS 502 (507)
Q Consensus 480 ~~v~v~G~~v~~~g~~~~~~~~~ 502 (507)
..|||+|+++|++|+++..+...
T Consensus 389 ~~v~v~G~~v~~~g~~~~~d~~~ 411 (424)
T PRK08393 389 ETTIVDGKIVMLDGEVLTLDEEK 411 (424)
T ss_pred eEEEECCEEEEECCeECCCCHHH
Confidence 99999999999999998765543
|
|
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=268.49 Aligned_cols=367 Identities=14% Similarity=0.102 Sum_probs=214.3
Q ss_pred ceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC------C
Q 010547 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------E 114 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~------~ 114 (507)
.+++|+|++|+++++ +.+++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+...... +
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~ 77 (430)
T PRK06038 2 ADIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG----DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLP 77 (430)
T ss_pred CCEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC----CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCC
Confidence 357999999998764 4578999999999999986432 246899999999999999999999753111 0
Q ss_pred ---C--------------CCh----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccC
Q 010547 115 ---W--------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 173 (507)
Q Consensus 115 ---~--------------~~~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (507)
| +.. ...+.+++++||||+.|+. . ......+..+....+. +..++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~------~~~~~~~a~~~~GiR~---~~~~~~~d~ 147 (430)
T PRK06038 78 LAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMY-F------YMDEVAKAVEESGLRA---ALSYGMIDL 147 (430)
T ss_pred HHHHHHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccc-c------CHHHHHHHHHHhCCeE---EEEchhccC
Confidence 0 000 1224567899999999874 1 1122222222121111 111111111
Q ss_pred CC-cc---cHHHHHHHHH--cC--CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhccc
Q 010547 174 EN-AY---NASALEALLN--AG--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 245 (507)
Q Consensus 174 ~~-~~---~~~~~~~~~~--~g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 245 (507)
.. .. ..+...++.+ .+ ...+...+.+ .....++++.++++++.|++++.++.+|+.+.......+...
T Consensus 148 ~~~~~~~~~l~~~~~~i~~~~~~~~g~v~~~~~~---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~- 223 (430)
T PRK06038 148 GDDEKGEAELKEGKRFVKEWHGAADGRIKVMYGP---HAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQ- 223 (430)
T ss_pred CCccchHHHHHHHHHHHHHhcCCCCCceEEEEeC---CcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHH-
Confidence 11 11 1112222221 11 1122222222 333467899999999999999999999996543211110000
Q ss_pred CcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccc
Q 010547 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~ 325 (507)
.-...++...+.+ ..+.++.+.|+..- ..+.++.+++.|+.+.. ||....
T Consensus 224 ----------------------~G~~~i~~l~~~g----~l~~r~~~~H~~~l--~~~~~~~la~~g~~v~~--~P~~n~ 273 (430)
T PRK06038 224 ----------------------YGMCSVNYLDDIG----FLGPDVLAAHCVWL--SDGDIEILRERGVNVSH--NPVSNM 273 (430)
T ss_pred ----------------------hCCCHHHHHHHcC----CCCCCeEEEEEecC--CHHHHHHHHhcCCEEEE--ChHHhh
Confidence 0001122222221 11455666777653 23357777788876543 563211
Q ss_pred ccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhH-HHHHHHH
Q 010547 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSY 404 (507)
Q Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 404 (507)
. ......++.++++.|+.+++|||+.+.....++ ++.. +......
T Consensus 274 ~-------------------~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~---------------~~~~~~a~~~~~ 319 (430)
T PRK06038 274 K-------------------LASGIAPVPKLLERGVNVSLGTDGCASNNNLDM---------------FEEMKTAALLHK 319 (430)
T ss_pred h-------------------hccCCCCHHHHHHCCCeEEEeCCCCccCCCcCH---------------HHHHHHHHHHhh
Confidence 0 001122456888899999999996543221111 1110 1111111
Q ss_pred H---HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE---eeE
Q 010547 405 G---RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGK 478 (507)
Q Consensus 405 ~---~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 478 (507)
. ...+++++++++++|.|||++||++ .|+|++|+.||||++|.+.+...+. .+++..+.. ...
T Consensus 320 ~~~~~~~~~~~~~al~~aT~~gA~~lg~~-~G~l~~G~~ADlvvld~~~~~~~p~----------~~~~~~~v~~~~~~~ 388 (430)
T PRK06038 320 VNTMDPTALPARQVLEMATVNGAKALGIN-TGMLKEGYLADIIIVDMNKPHLTPV----------RDVPSHLVYSASGSD 388 (430)
T ss_pred hccCCCCcCCHHHHHHHHhHHHHHHhCCC-CCccCCCcccCEEEEeCCCCccCCC----------CChHHheeEeCCCCc
Confidence 1 1246899999999999999999995 6999999999999999886432211 122222221 236
Q ss_pred EEEEEECCEEEEecCcccCCCCCc
Q 010547 479 VLATISRGNLVYKEGNHAPAACGS 502 (507)
Q Consensus 479 V~~v~v~G~~v~~~g~~~~~~~~~ 502 (507)
|..|||+|+++|++|++++.+..+
T Consensus 389 v~~v~v~G~~v~~~g~~~~~d~~~ 412 (430)
T PRK06038 389 VDTTIVDGRILMEDYKVLCMDEQD 412 (430)
T ss_pred eeEEEECCEEEEECCeECCCCHHH
Confidence 999999999999999998765443
|
|
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=263.86 Aligned_cols=356 Identities=18% Similarity=0.139 Sum_probs=201.1
Q ss_pred eeeeEEEeCCEEEEeecCCCCCCCCC-CCcEEecCCCEEecceeecccccCCCCCCC--------C--------------
Q 010547 59 ISGAVEIKEGNIISIVSEEDWPRNSK-TGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------W-------------- 115 (507)
Q Consensus 59 ~~~~I~I~dG~I~~Vg~~~~~~~~~~-~~~viD~~g~~v~PGfID~H~H~~~~~~~~--------~-------------- 115 (507)
.+++|+|+||+|++||+..+.....+ +.++||++|++|+|||||+|+|+....... |
T Consensus 30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~ 109 (433)
T PRK09228 30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD 109 (433)
T ss_pred CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence 48899999999999998654322111 368999999999999999999986532110 0
Q ss_pred -CCh----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc---CceeeEEEecc-cc----CCCcccH---
Q 010547 116 -EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGG-LV----PENAYNA--- 179 (507)
Q Consensus 116 -~~~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~----~~~~~~~--- 179 (507)
+.. ...+.+++++||||++++. .. .........++... +.......... .. .......
T Consensus 110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~-----~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (433)
T PRK09228 110 PAYAREVAEFFLDELLRNGTTTALVFG-TV-----HPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDS 183 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEecc-cc-----CHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHH
Confidence 001 1123457899999999874 11 12222333333322 22221111110 00 0011111
Q ss_pred -HHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEecCCccc-chhhhhcccCcCCccccccc
Q 010547 180 -SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTY 256 (507)
Q Consensus 180 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~ 256 (507)
+.++++...+...+. +.+ ...+.++++.++++.+.|+++ +.++++|..+... ........+
T Consensus 184 ~~~~~~~~~~~~~~~~--~~p---~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g----------- 247 (433)
T PRK09228 184 KALIERWHGKGRLLYA--ITP---RFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFP----------- 247 (433)
T ss_pred HHHHHHHhCCCCceEE--EEC---CcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcC-----------
Confidence 122232222332222 222 333567899999999999998 9999999854332 111100000
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCC
Q 010547 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 336 (507)
Q Consensus 257 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 336 (507)
..+ ...+.+.+.+ ..+.++.+.|+... ..+.++.+++.|+.+. +||..-.. .
T Consensus 248 --~~~---------~~~~~l~~~G----~l~~~~~~~H~~~l--~~~~~~~la~~g~~v~--~~P~sn~~------l--- 299 (433)
T PRK09228 248 --EAR---------DYLDVYERYG----LLGPRAVFAHCIHL--EDRERRRLAETGAAIA--FCPTSNLF------L--- 299 (433)
T ss_pred --CCC---------CHHHHHHHcC----CCCCCeEEEeccCC--CHHHHHHHHHcCCeEE--ECCccHHh------h---
Confidence 000 0122222221 11567888888873 3456777777887554 46642110 0
Q ss_pred ceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhh-HHHHHHHHHHhcCCCHHHH
Q 010547 337 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVTWSYGRKYGVTLEQL 415 (507)
Q Consensus 337 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~gls~~~a 415 (507)
.....++.++++.|+++++|||..+.+... .++. .+..........+++++++
T Consensus 300 ----------g~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d----------------~~~~~~~~~~~~~~~~~~~~~~~~ 353 (433)
T PRK09228 300 ----------GSGLFDLKRADAAGVRVGLGTDVGGGTSFS----------------MLQTMNEAYKVQQLQGYRLSPFQA 353 (433)
T ss_pred ----------cCCCcCHHHHHHCCCeEEEecCCCCCCCCC----------------HHHHHHHHHHHhhcccCCCCHHHH
Confidence 011224567788899999999975322111 0110 0111111122356899999
Q ss_pred HHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE---eeEEEEEEECCEEEEe
Q 010547 416 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYK 491 (507)
Q Consensus 416 l~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~V~~v~v~G~~v~~ 491 (507)
++++|.|||+++|+ +++|+|++||+||||++|.+..+...+. ....... .+|+..+.. ...|+.|||+|++||+
T Consensus 354 l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv~d~~~~~~~~~~-~~~~~~~-~d~~~~lv~~~~~~~V~~v~VdG~~v~~ 431 (433)
T PRK09228 354 FYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALR-TARAESL-EELLFALMTLGDDRAVAETYVAGRPVYR 431 (433)
T ss_pred HHHHhHHHHHHhCCCCCCcccCCCCCCCEEEEcCCCCccccch-hcccCCH-HHHHHHHhhcCCccceeEEEECCEEecc
Confidence 99999999999999 5689999999999999998753321100 0000001 233433333 3569999999999986
Q ss_pred c
Q 010547 492 E 492 (507)
Q Consensus 492 ~ 492 (507)
+
T Consensus 432 ~ 432 (433)
T PRK09228 432 R 432 (433)
T ss_pred C
Confidence 4
|
|
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-30 Score=262.84 Aligned_cols=323 Identities=20% Similarity=0.227 Sum_probs=220.4
Q ss_pred eEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 44 QYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 44 ~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
+++|+|++|+++.. +..++|+|+||+|++|++.. +.++||++|++|+|||||+|+|+..+... ....
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~-------~~~viDa~G~~v~PG~ID~H~Hi~~~~~~----~~~~ 69 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN-------GVKVIDALGEYAVPGFIDAHIHIESSMLT----PSEF 69 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC-------CCeEEECCCCEEEeCeEecccccCCCCCC----hhHH
Confidence 47899999998643 56789999999999998641 46899999999999999999999875443 2234
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc-C-----CCcc--cHHHHHHHHH-cCCcE
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-P-----ENAY--NASALEALLN-AGVLG 192 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~--~~~~~~~~~~-~g~~~ 192 (507)
.+.++.+||||+++.| ++.|.....+.+....+.++ ..++++....... + .... ..++++++.+ .|+.+
T Consensus 70 ~~~al~~GvTtvv~~P-~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~g 147 (552)
T TIGR01178 70 AKLVLPHGVTTVVSDP-HEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLG 147 (552)
T ss_pred HHHHHCCCEEEEEcCC-CCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccE
Confidence 5678999999999998 66677778888888877666 5567765544321 1 1111 4677888876 49999
Q ss_pred EEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHH
Q 010547 193 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 272 (507)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 272 (507)
++.++.+++ . ...++.+.+.++.+++.+..+..|++.... ..+...
T Consensus 148 lke~m~~~~---v-~~~d~~~l~~i~~a~~~g~~I~gHap~l~~------------------------------~eL~~~ 193 (552)
T TIGR01178 148 LAEVMDYPG---V-INADIEMLNKINSARKRNKVIDGHCPGLSG------------------------------KLLNKY 193 (552)
T ss_pred EEEEecchh---h-cCCCHHHHHHHHHHHhCCCEEEecCCCCCH------------------------------HHHHHH
Confidence 999986532 1 234555555558899999999999964321 111222
Q ss_pred HHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHH
Q 010547 273 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 352 (507)
Q Consensus 273 ~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 352 (507)
... |. ...|.. .+.+...+..++|..+..-.. + ...+...
T Consensus 194 ---~~a--------Gi--~~dHe~---~s~~ea~e~~~~Gm~~~ir~g---------------s---------~~~n~~~ 233 (552)
T TIGR01178 194 ---ISA--------GI--SNDHES---TSIEEAREKLRLGMKLMIREG---------------S---------AAKNLEA 233 (552)
T ss_pred ---HHc--------CC--CCCcCc---CCHHHHHHHHHCCCEEEEeCC---------------c---------cccCHHH
Confidence 111 32 245543 335566666677765543110 0 0111122
Q ss_pred HHHHH--hcCCeeEEeCCCC-CCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 353 LWEAL--MDGHIDMLSSDHS-PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 353 ~~~~l--~~G~~~~lgtD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
+..++ ..+.+++++||.. +.+... .| .+....+.+.+.|+++++|++++|.|||+++|+
T Consensus 234 ~~~~~~~~~~~~~~l~TD~~~~~~~~~----~g--------------~l~~~v~~ai~~g~~~~~Al~maT~npA~~lgl 295 (552)
T TIGR01178 234 LHPLINEKNCRSLMLCTDDRHVNDILN----EG--------------HINHIVRRAIEHGVDPFDALQMASINPAEHFGI 295 (552)
T ss_pred HHHHHhhcCCceEEEEeCCCChhHHHh----cC--------------CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 22222 2467899999942 111111 01 144455566677999999999999999999999
Q ss_pred CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec-----Cccc
Q 010547 430 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-----GNHA 496 (507)
Q Consensus 430 ~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~-----g~~~ 496 (507)
++.|+|++|+.|||+++|... .. .+..||++|++|.++ |+.+
T Consensus 296 ~~~G~I~pG~~ADlvvl~~l~-------------~~------------~v~~v~~~G~~v~~~~~~~~g~~~ 342 (552)
T TIGR01178 296 DVGGLIAPGDPADFVILKDLR-------------NF------------KVNKTYVKGKLLDLNEVFNDEISR 342 (552)
T ss_pred CCCcccCCCCcCCEEEECCCC-------------Cc------------eEEEEEECCEEEcccccccCCccc
Confidence 668999999999999999311 11 689999999999997 7754
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-30 Score=255.81 Aligned_cols=357 Identities=17% Similarity=0.221 Sum_probs=213.9
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---CCCChhHH
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSG 121 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---~~~~~~~~ 121 (507)
++|+|++|++++...+++|+|+||+|++|++....+. ..+.++||++|++|+|||||+|+|+..+... ...+....
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~~-~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~ 80 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPG-YENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVT 80 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCccccc-CCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHH
Confidence 5799999999877778899999999999998754331 2357899999999999999999998653211 11223344
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc---c----cHHHHHHHHHcCCcEEE
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---Y----NASALEALLNAGVLGLK 194 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~g~~~~~ 194 (507)
...++++|+||+++++ ++.+.....+.+....+.+...+...+...+....... + ....++.+...|..++.
T Consensus 81 ~~~~~~~G~tt~~d~~-~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~ 159 (387)
T cd01308 81 LSDLTTAGVTTVVGCL-GTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIGVGEIAIS 159 (387)
T ss_pred HHHHHhCCceEEecCc-CCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcCcceEEEc
Confidence 5678999999999986 44444444555555555444333333332221100001 1 11112222111222221
Q ss_pred EcccCCCCCCCCCCCHHHHHHHHHHHHhcCC------cEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~------~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
. .........++.++...++..+. .+.+|... ....
T Consensus 160 ~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~-------------------------------~~~~ 201 (387)
T cd01308 160 D-------HRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGD-------------------------------GKRA 201 (387)
T ss_pred C-------CCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC-------------------------------chHH
Confidence 1 11224556677777777765332 24444421 1234
Q ss_pred HHHHHHHHHhhccCCCCCCceE-EEEecCCh--hHHHHHHHHHHhCCCCEEEe--cccccccccccCCCCCCCceeEcCC
Q 010547 269 IRELLTVAKDTRTDGPAEGAHL-HIVHLSDA--SSSLDLLMEAKTNGDSITVE--TCPHYLAFSAEEIPDGDTRFKCAPP 343 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~-~~~h~~~~--~~~~~~i~~~~~~g~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 343 (507)
+++..++.++. |.++ ++.|.... .+..+...+..++|..+... .+++++ ..|+
T Consensus 202 ~~~i~~~~~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~---------------~~~~ 259 (387)
T cd01308 202 LSPIFELIEET-------EIPITQFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSIDPQFR---------------KEGE 259 (387)
T ss_pred HHHHHHHHHhc-------CCCcceeECCcccCCHHHHHHHHHHHHcCCcEEEECCCCcccc---------------ccCc
Confidence 56666666654 5444 44444332 12222233344455544332 222111 1222
Q ss_pred CCChhhHHHHHHHHhcCC---eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHh
Q 010547 344 IRDAANKEKLWEALMDGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 420 (507)
Q Consensus 344 ~~~~~~~~~~~~~l~~G~---~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T 420 (507)
+ ...+.++.++.+|. .++++||+...... ....+.+. ..++.+....+..+.......+++++++++++|
T Consensus 260 ~---~~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~--~~~~g~~~--~~g~~~~~~~~~~~~~~v~~~~i~~~~al~~~T 332 (387)
T cd01308 260 V---RPSEALKRLLEQGVPLERITFSSDGNGSLPK--FDENGNLV--GLGVGSVDTLLREVREAVKCGDIPLEVALRVIT 332 (387)
T ss_pred c---ChHHHHHHHHHhCCCCCcEEEEECCCCCccc--CccCCeEE--ecCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2 13456678888885 35999997422110 01112221 235666776666666444555699999999999
Q ss_pred hchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC
Q 010547 421 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 421 ~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~ 497 (507)
.|||+++|++++|+|++|++|||+++|.+. .+..|+++|++|+++|++..
T Consensus 333 ~npA~~lg~~~~G~i~~G~~ADlvv~d~~~---------------------------~~~~~~~~G~~v~~~~~~~~ 382 (387)
T cd01308 333 SNVARILKLRKKGEIQPGFDADLVILDKDL---------------------------DINSVIAKGQIMVRNGKLLV 382 (387)
T ss_pred HHHHHHhCCCCCCCcCCCCcCCEEEEcCCC---------------------------CEEEEEECCEEEEECCeEee
Confidence 999999999548999999999999999651 57889999999999999864
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=260.89 Aligned_cols=343 Identities=22% Similarity=0.263 Sum_probs=200.4
Q ss_pred cceEEEEecEEECCCC--------ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC
Q 010547 42 YNQYWLTSKRIVTPKG--------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~--------~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~ 113 (507)
+.+++|+|++|+++++ +.+++|+|+||||++|++..+.+..+ +.++||+.|++|+|||||+|+|+......
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~-~~~~iD~~g~~v~PG~id~H~Hl~~~~~~ 80 (406)
T PRK09356 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAY-AAEVIDAGGKLVTPGLIDCHTHLVFGGNR 80 (406)
T ss_pred CceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCcccccccc-CceEEECCCCEEeeceEecCCCcccCCCc
Confidence 5679999999998763 33789999999999999875443221 36899999999999999999999753211
Q ss_pred C-----------CC-------C---------------h----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHH
Q 010547 114 E-----------WE-------G---------------F----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 156 (507)
Q Consensus 114 ~-----------~~-------~---------------~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~ 156 (507)
. +. . + ...+..++++||||+.++. ...-.........+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~ 159 (406)
T PRK09356 81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKS-GYGLDLETELKMLRVARR 159 (406)
T ss_pred HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeec-cCCCCHHHHHHHHHHHHH
Confidence 0 00 0 0 1123456899999999763 111000011111111222
Q ss_pred HhcCceeeEE--Eec--cccCCC----cccHH-----HHHHHHHc-CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHh
Q 010547 157 AEKRIYVDVG--FWG--GLVPEN----AYNAS-----ALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222 (507)
Q Consensus 157 ~~~~~~~~~~--~~~--~~~~~~----~~~~~-----~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 222 (507)
......+.+. ..+ ++.... +...+ .++..... ++..++.+. .....+++.+.++++.|++
T Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~l~~~~~~A~~ 233 (406)
T PRK09356 160 LGEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFC------ETGAFSVEQSERVLEAAKA 233 (406)
T ss_pred HhhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEe------cCCCCCHHHHHHHHHHHHH
Confidence 2222111111 110 011000 00011 11121222 233443321 1124678999999999999
Q ss_pred cCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHH
Q 010547 223 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 302 (507)
Q Consensus 223 ~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~ 302 (507)
+|.++.+|+..... ...+.... +. + ...+.|+... +.
T Consensus 234 ~g~~v~~H~~~~~~-----------------------------~~~~~~~~----~~-------~-~~~~~H~~~~--~~ 270 (406)
T PRK09356 234 LGLPVKIHAEQLSN-----------------------------LGGAELAA----EY-------G-ALSADHLEYL--DE 270 (406)
T ss_pred CCCCEEEEEecccC-----------------------------CCHHHHHH----Hc-------C-CcEehHhhcC--CH
Confidence 99999999843210 00011111 11 1 1234565542 23
Q ss_pred HHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCC-CChhhhcccc
Q 010547 303 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDE 381 (507)
Q Consensus 303 ~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~-~~~~~~~~~~ 381 (507)
+.++.+++.|+.+. +||...... +. ....++.++++.|+++++|||+.+ .+....
T Consensus 271 ~~~~~la~~g~~~~--~~P~~~~~l-------~~-----------~~~~~~~~l~~~Gi~v~lgtD~~~~~~~~~~---- 326 (406)
T PRK09356 271 AGIAAMAEAGTVAV--LLPGAFYFL-------RE-----------TQYPPARLLRDAGVPVALATDFNPGSSPTES---- 326 (406)
T ss_pred HHHHHHHHhCCEEE--ECccchhhc-------Cc-----------ccCchHHHHHHCCCeEEEeCCCCCCCChhHH----
Confidence 45666677776544 466321110 00 012245677788999999999754 221110
Q ss_pred CCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCC
Q 010547 382 GNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHP 459 (507)
Q Consensus 382 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~ 459 (507)
+...+.. ....+++++++++++|.|||+++|+ +++|+|++||.|||+++|.++...+.
T Consensus 327 ----------------~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~---- 386 (406)
T PRK09356 327 ----------------LLLAMNMACTLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELP---- 386 (406)
T ss_pred ----------------HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhh----
Confidence 2222222 2356899999999999999999999 66899999999999999987543211
Q ss_pred cccCCCCCccccCcEEeeEEEEEEECCEEEEe
Q 010547 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491 (507)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~ 491 (507)
.. ....+|..||++|++||+
T Consensus 387 -~~-----------~~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 387 -YH-----------FGVNPVETVVKNGEVVVD 406 (406)
T ss_pred -hh-----------hCCCCccEEEECCEEeeC
Confidence 00 012379999999999985
|
|
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=259.45 Aligned_cols=357 Identities=24% Similarity=0.291 Sum_probs=216.4
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC--C-C----CCCCcEEecCCCEEecceeecccccCCCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--R-N----SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~--~-~----~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~ 114 (507)
.++++|+|++|+|.+++.+++|.|+||||++|++...+. . . ..++++||++|++|+|||||+|+|+..+.
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P~--- 141 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISPQ--- 141 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCcc---
Confidence 457999999999987778899999999999999754321 0 0 12568999999999999999999985432
Q ss_pred CCChhHHHHHHHhCCceEEEeCCC----CCCCCCCC--HHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHc
Q 010547 115 WEGFPSGTKAAAAGGITTLIDMPL----NSDPSTIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA 188 (507)
Q Consensus 115 ~~~~~~~~~~~l~~GvTt~~~~~~----~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (507)
..+.++..||||+++.+. ++.|.... ........++.. ...+++.+++.. .....+.+.++.+.
T Consensus 142 ------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~-~~~in~g~~g~g---~~~~~~~L~e~i~a 211 (567)
T TIGR01792 142 ------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD-GLPINFGFTGKG---SGSGPAALIEQIEA 211 (567)
T ss_pred ------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhc-cCCccEEEEeCC---ccchHHHHHHHHHc
Confidence 357889999999999532 12222222 222233334443 344666554321 12345667777889
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
|+.+++.+. .+..+++.+.++++.|++++.++.+|++...+ ...
T Consensus 212 Ga~gfK~h~-------~y~~s~e~L~~al~~A~e~gv~V~iH~ET~~E-----------------------------~g~ 255 (567)
T TIGR01792 212 GACGLKVHE-------DWGATPAAIDNALSVADEYDVQVAVHTDTLNE-----------------------------SGF 255 (567)
T ss_pred CCcEEEeCC-------CCCCCHHHHHHHHHHHHHcCCEEEEeCCCccc-----------------------------chH
Confidence 999998743 33689999999999999999999999965432 111
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCCh--hHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEc----C
Q 010547 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA----P 342 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~--~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----p 342 (507)
++..++... +.++|..|.... ....+.++.+...++..+ .+.| ...++.+.+...-...+.+ |
T Consensus 256 ve~t~~a~g---------~rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~-st~p-t~p~~~~~~~e~~~m~~~~h~l~~ 324 (567)
T TIGR01792 256 VEDTIAAFK---------GRTIHTYHTEGAGGGHAPDIIVVVGYNNILPS-STNP-TLPYTVNTIDEHLDMLMVCHHLNP 324 (567)
T ss_pred HHHHHHHHC---------CCcchhHhhcCCCCCcHHHHHHHcCCCCcccC-CCCC-CCCCccCchhhhcCeEEEeccCCC
Confidence 233333322 677888887632 023445554444443221 1222 2333333333322222222 2
Q ss_pred CCCC----hhh---HHHH--HH-HHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCC-
Q 010547 343 PIRD----AAN---KEKL--WE-ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV- 410 (507)
Q Consensus 343 ~~~~----~~~---~~~~--~~-~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gl- 410 (507)
.+.. ... .+.+ -. +-..|+...++||..+-- .++.+..++-....+. ...|.
T Consensus 325 ~~~~d~~~a~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mg----------------r~~~~~~r~~q~a~k~~~~~g~~ 388 (567)
T TIGR01792 325 KIPEDVAFAESRIRKETIAAEDVLQDMGAISMISSDSQAMG----------------RIGEVVTRCWQTADKMKKQRGPL 388 (567)
T ss_pred CCcccchhhhhhccceeccccchhhhCCcEEEecCCchhhC----------------cccceeechHHHHHHHHHhcCCC
Confidence 2211 000 0011 11 233599999999975221 1111111111111111 11121
Q ss_pred ---C----HHH---HHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEE
Q 010547 411 ---T----LEQ---LASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479 (507)
Q Consensus 411 ---s----~~~---al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 479 (507)
+ .+. .+++.|.|||+++|+ +++|+|++||.|||||||.+. + .. .+
T Consensus 389 ~~~~~~~~~~rl~r~L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~---------f-~~--------------~p 444 (567)
T TIGR01792 389 PGDSPGNDNNRVKRYVAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAF---------F-GV--------------KP 444 (567)
T ss_pred cccccCChhhhHHHHHHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCcc---------c-CC--------------Ch
Confidence 1 111 299999999999999 779999999999999999652 1 11 35
Q ss_pred EEEEECCEEEEec-CcccCC
Q 010547 480 LATISRGNLVYKE-GNHAPA 498 (507)
Q Consensus 480 ~~v~v~G~~v~~~-g~~~~~ 498 (507)
..||++|+++|.. |....+
T Consensus 445 ~~v~~~G~i~~~~~Gd~~as 464 (567)
T TIGR01792 445 DMVLKGGLIAWAIMGDPNAS 464 (567)
T ss_pred heEEECCEEEEEeCCCcccc
Confidence 7899999999976 665433
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-30 Score=253.28 Aligned_cols=337 Identities=20% Similarity=0.217 Sum_probs=199.6
Q ss_pred EEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---------
Q 010547 45 YWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------- 113 (507)
Q Consensus 45 ~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~--------- 113 (507)
++|+|++|++++. ..+++|+|+||+|++|++.. ++.++||++|++| |||||+|+|+......
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~ 74 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLD 74 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHH
Confidence 6899999999765 45788999999999998751 2568999999999 9999999999753110
Q ss_pred CC-----------------CC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc
Q 010547 114 EW-----------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (507)
Q Consensus 114 ~~-----------------~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (507)
.+ +. ....+.+++++||||+.|+. .. . ...+....++.... .+.....+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~~--~---~~~~~~~~~a~~~~-~~r~~~~~~~~ 147 (375)
T PRK07213 75 ELVKPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFR-EG--G---IKGINLLKKASSDL-PIKPIILGRPT 147 (375)
T ss_pred HHccCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhh-hc--C---hhHHHHHHHHHHcC-CCceEEecCCC
Confidence 00 00 12335567899999999863 11 1 11122222222221 11111111110
Q ss_pred C-CCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCcCCc
Q 010547 173 P-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDT 250 (507)
Q Consensus 173 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~~~~ 250 (507)
. ......+.+++..+. ..++.. ......+++.++++++.|++++.++.+|+.+... ........+
T Consensus 148 ~~~~~~~~~~~~~~~~~-~~g~~~-------~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G----- 214 (375)
T PRK07213 148 EADENELKKEIREILKN-SDGIGL-------SGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYG----- 214 (375)
T ss_pred cccchhhHHHHHHHHHh-cccccc-------cccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcC-----
Confidence 0 111112223332221 112211 2334578899999999999999999999854322 000000000
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccC
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~ 330 (507)
...++.+. +.+. ... .+.|+... +.+.++.+++.|+.+.. ||..-..
T Consensus 215 ---------------~~~v~~~~----~~G~-----~~~-~i~H~~~~--~~~~i~~la~~g~~v~~--~P~sn~~---- 261 (375)
T PRK07213 215 ---------------MTEIERLI----NLGF-----KPD-FIVHATHP--SNDDLELLKENNIPVVV--CPRANAS---- 261 (375)
T ss_pred ---------------CChHHHHH----hcCC-----CCC-EEEECCCC--CHHHHHHHHHcCCcEEE--CCcchhh----
Confidence 00122222 2211 111 35777653 33457777888876544 6631110
Q ss_pred CCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCC
Q 010547 331 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 410 (507)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gl 410 (507)
......++.++++.|+++++|||..+++... + +..+.......++
T Consensus 262 ---------------l~~g~~~v~~l~~~Gv~v~lGTD~~~~~~~~-~-------------------~~e~~~~~~~~~~ 306 (375)
T PRK07213 262 ---------------FNVGLPPLNEMLEKGILLGIGTDNFMANSPS-I-------------------FREMEFIYKLYHI 306 (375)
T ss_pred ---------------hccCCccHHHHHHCCCEEEEeeCCCCCchHh-H-------------------HHHHHHHHHHhCc
Confidence 0011234678889999999999976432111 0 1111112234579
Q ss_pred CHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE---eeEEEEEEECCE
Q 010547 411 TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGN 487 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~V~~v~v~G~ 487 (507)
+++++++++|.|||++||+++.|+|++||+||||++|.+..... .+|+..+.. .+.|..|||+||
T Consensus 307 ~~~~~l~~aT~~gA~~lg~~~~G~l~~G~~ADlvv~d~~~~~p~------------~dp~~~lV~~~~~~~v~~v~v~G~ 374 (375)
T PRK07213 307 EPKEILKMATINGAKILGLINVGLIEEGFKADFTFIKPTNIKFS------------KNPYASIITRCESGDIVNKILKGK 374 (375)
T ss_pred CHHHHHHHHHHHHHHHhCCCCcCCcCCCCcccEEEEcCcccccc------------CCchHHHhhhccCCCceEEEECCc
Confidence 99999999999999999996699999999999999997532211 344444443 346999999998
Q ss_pred E
Q 010547 488 L 488 (507)
Q Consensus 488 ~ 488 (507)
.
T Consensus 375 ~ 375 (375)
T PRK07213 375 L 375 (375)
T ss_pred C
Confidence 4
|
|
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=262.49 Aligned_cols=367 Identities=23% Similarity=0.262 Sum_probs=228.9
Q ss_pred CcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCC-CCCcEEecCCCEEecceeecccccCCCCCCC---
Q 010547 41 PYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNS-KTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--- 114 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~-~~~~viD~~g~~v~PGfID~H~H~~~~~~~~--- 114 (507)
+..++++.||+|+|++. ..-.+|.|+||||++||...+..... +++++||++|++|+|||||+|+|+...+...
T Consensus 3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~ 82 (535)
T COG1574 3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLEL 82 (535)
T ss_pred cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhcc
Confidence 46789999999999986 44678999999999999987665443 4789999999999999999999993221110
Q ss_pred --------------------------C-----------------------------------------------------
Q 010547 115 --------------------------W----------------------------------------------------- 115 (507)
Q Consensus 115 --------------------------~----------------------------------------------------- 115 (507)
|
T Consensus 83 ~~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~G 162 (535)
T COG1574 83 NLDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAG 162 (535)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcC
Confidence 0
Q ss_pred ---C------------------------C-------------------hhH-HHHHHHhCCceEEEeCCCCCCCCCCCHH
Q 010547 116 ---E------------------------G-------------------FPS-GTKAAAAGGITTLIDMPLNSDPSTISTE 148 (507)
Q Consensus 116 ---~------------------------~-------------------~~~-~~~~~l~~GvTt~~~~~~~~~p~~~~~~ 148 (507)
. . ... ..+.+++.|+|++.++. . + .....
T Consensus 163 i~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~-~--~-~~~~~ 238 (535)
T COG1574 163 ITRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMA-G--Y-QGYYA 238 (535)
T ss_pred CCCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEccc-c--c-ccchh
Confidence 0 0 001 33466789999999875 2 1 12222
Q ss_pred HHHHHHHHHh-cCceeeEEEeccccCCCcccHHHHHHHHH-cC------CcEEEEcc----------------cCCCCCC
Q 010547 149 TLKLKVDAAE-KRIYVDVGFWGGLVPENAYNASALEALLN-AG------VLGLKSFM----------------CPSGIND 204 (507)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~----------------~~~~~~~ 204 (507)
.+........ +...+++... +....... ....... .+ ..++|.|. ...+..+
T Consensus 239 ~~~~~r~~~~~~~l~~rv~~~--l~~~~~~~--~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G 314 (535)
T COG1574 239 DYEAYRALAAGGELPVRVALL--LFTEDLKE--ERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSG 314 (535)
T ss_pred HHHHHHHHHhcCcceEEEEee--ccccchhh--HHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCC
Confidence 2222222222 2333333221 11111110 1111111 11 11222321 1111225
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCC
Q 010547 205 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284 (507)
Q Consensus 205 ~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 284 (507)
.+..+++++.++++.+.++|.++.+|+ -.+.+++..++.+++...+.+
T Consensus 315 ~~l~~~e~l~~~v~~a~~~gl~v~vHA--------------------------------iGD~Av~~~LdafE~~~~~~~ 362 (535)
T COG1574 315 ELLLTEEELEELVRAADERGLPVAVHA--------------------------------IGDGAVDAALDAFEKARKKNG 362 (535)
T ss_pred CcccCHHHHHHHHHHHHHCCCcEEEEE--------------------------------echHHHHHHHHHHHHHhhhcC
Confidence 667899999999999999999999999 345577888888887765544
Q ss_pred CCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC-CCCceeEcCCCCChhhHHHHHHHHhcCCee
Q 010547 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD-GDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (507)
Q Consensus 285 ~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 363 (507)
..+.+..+.|++. ...+.+.++++.|+..+ +.|++......-+.. .+.. ......++..+++.|+++
T Consensus 363 ~~~~r~rieH~~~--v~~~~i~R~~~Lgv~~s--vQP~f~~~~~~~~~~rlG~~--------r~~~~~p~~~ll~~G~~l 430 (535)
T COG1574 363 LKGLRHRIEHAEL--VSPDQIERFAKLGVIAS--VQPNFLFSDGEWYVDRLGEE--------RASRSYPFRSLLKAGVPL 430 (535)
T ss_pred CccCCceeeeeee--cCHhHHHHHHhcCceEe--eccccccccchHHHHhhhhh--------hhhccCcHHHHHHCCCeE
Confidence 4577888999987 55678888888886544 456554432111100 0000 111123456788999999
Q ss_pred EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-----H--HhcCCCHHHHHHHHhhchhHHhCC-CCCCcc
Q 010547 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-----G--RKYGVTLEQLASWWSERPAKLAGQ-VSKGAI 435 (507)
Q Consensus 364 ~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~--~~~gls~~~al~~~T~n~A~~lgl-~~~G~I 435 (507)
+.|||+.....+ +|. +++... -+. . .+..+|++||+++.|.|+|++.|. +++|+|
T Consensus 431 a~gSD~Pv~~~d-------P~~-------~i~~AV---tr~~~~g~~~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~L 493 (535)
T COG1574 431 AGGSDAPVEPYD-------PWL-------GIYAAV---TRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSL 493 (535)
T ss_pred eccCCCCCCCCC-------hHH-------HHHHHH---cCCCCCCCCCccccccCHHHHHHHHhhhhHHhhhcccccccc
Confidence 999998542211 110 000000 000 0 011599999999999999999999 889999
Q ss_pred ccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 436 AIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 436 ~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
++||.|||+|+|.|. +.+++. ..+.. +|..||++||+||+.
T Consensus 494 e~G~~AD~~Vld~d~-f~~~~~---~i~~~------------~v~~T~~~Gk~VY~~ 534 (535)
T COG1574 494 EPGKLADFAVLDRDP-FTVDPD---SIKDT------------KVVLTIVAGKVVYRA 534 (535)
T ss_pred ccCceeeEEEecCCc-ccCChH---Hhccc------------eEEEEEEcCeEeecC
Confidence 999999999999643 333322 11222 699999999999974
|
|
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=253.62 Aligned_cols=353 Identities=17% Similarity=0.159 Sum_probs=213.4
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC-CC------
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-EW------ 115 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~-~~------ 115 (507)
.+++|+|++|+++. ..+|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+...... .+
T Consensus 2 ~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~ 75 (391)
T PRK05985 2 TDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAP---PGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPG 75 (391)
T ss_pred CCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecceEeeEEccCccccCCccccCCCC
Confidence 56799999999975 568999999999999865433 256899999999999999999999642111 00
Q ss_pred C------------------C----hhHHHHHHHhCCceEEEeCCCCCCCC--CCCHHHHHHHHHHHhcCceeeEEEeccc
Q 010547 116 E------------------G----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGL 171 (507)
Q Consensus 116 ~------------------~----~~~~~~~~l~~GvTt~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (507)
. . .......++++|+|+++++. ...|. ....+.+.+..+.......+++......
T Consensus 76 ~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 154 (391)
T PRK05985 76 PSLRERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHV-DVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQS 154 (391)
T ss_pred CCHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeE-ccCCCcccchHHHHHHHHHHhhCcccEEEEeccCc
Confidence 0 1 11224567899999999876 22232 2223344444433333444444332211
Q ss_pred cC-CCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc
Q 010547 172 VP-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 172 ~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (507)
.. ..+...+.+++..+.|+..+.. +.+ ......+++.+.++++.|+++|.++.+|+.....
T Consensus 155 g~~~~~~~~~ll~~~l~~g~~~~gg-~~p---~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d-------------- 216 (391)
T PRK05985 155 GVLSRPGTAELLDAALRAGADVVGG-LDP---AGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGE-------------- 216 (391)
T ss_pred cccCCcCHHHHHHHHHHcCCCEEeC-CCC---CCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCC--------------
Confidence 11 1112346677777777642222 211 2223467799999999999999999999855332
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCCEEEeccccccc
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLA 325 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~-----~~~~~~i~~~~~~g~~i~~~~~~~~~~ 325 (507)
.....+...++...+.+. ..++.+.|+..- ....+.++.+++.|+.+... +.
T Consensus 217 -------------~~~~~~~~~~e~~~~~g~-----~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~--~~--- 273 (391)
T PRK05985 217 -------------LGAFQLERIAARTRALGM-----QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTN--AP--- 273 (391)
T ss_pred -------------ccHHHHHHHHHHHHHhCC-----CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEe--CC---
Confidence 011123333444333311 124778887531 12235678888888876532 10
Q ss_pred ccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH
Q 010547 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405 (507)
Q Consensus 326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 405 (507)
......++.++++.|+.+++|||+...+... ......++..........
T Consensus 274 --------------------~~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~p-----------~~~~~~~~~~~~~~~~~~ 322 (391)
T PRK05985 274 --------------------GSVPVPPVAALRAAGVTVFGGNDGIRDTWWP-----------YGNGDMLERAMLIGYRSG 322 (391)
T ss_pred --------------------CCCCCCCHHHHHHCCCeEEEecCCCCCCCcC-----------CCCCcHHHHHHHHHHHHc
Confidence 0011224568888999999999975321110 011122221110000000
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEEC
Q 010547 406 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR 485 (507)
Q Consensus 406 ~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~ 485 (507)
....-+++++++++|.|||+++|+++ ++|++||.||||++|.++...... ..+ .+..||++
T Consensus 323 ~~~~~~~~~al~~~T~~~A~~lg~~~-~~l~~G~~ADlvvld~~~~~~~~~------~~~------------~~~~v~~~ 383 (391)
T PRK05985 323 FRTDDELAAALDCVTHGGARALGLED-YGLAVGARADFVLVDAETVAEAVV------AVP------------VRRLVVRG 383 (391)
T ss_pred cCChHHHHHHHHHHcchhHHHhCCcc-cCCCCCCcCCEEEECCCCHHHHHh------hCC------------cceEEEEC
Confidence 01122457999999999999999954 469999999999999876432210 111 35779999
Q ss_pred CEEEEecC
Q 010547 486 GNLVYKEG 493 (507)
Q Consensus 486 G~~v~~~g 493 (507)
|++||++|
T Consensus 384 G~~v~~~~ 391 (391)
T PRK05985 384 GRIVARDG 391 (391)
T ss_pred CEEEecCC
Confidence 99999876
|
|
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-29 Score=252.28 Aligned_cols=348 Identities=19% Similarity=0.240 Sum_probs=214.6
Q ss_pred EEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHH
Q 010547 45 YWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (507)
Q Consensus 45 ~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~ 122 (507)
++|+|++|+|+.. ...++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+..+. ...+. +..
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~---~~~~~iD~~g~~v~PG~iD~H~H~~~~~-~~~~~--~~~ 74 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGS---QAKKVIDLSGLYVSPGWIDLHVHVYPGS-TPYGD--EPD 74 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEEeeecCCCCC-CccCC--CHH
Confidence 4799999999765 45689999999999998764432 2568999999999999999999998543 22221 456
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHH-hc--CceeeEEEeccccCCCc-----ccHHHHHHHHH---cCCc
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVPENA-----YNASALEALLN---AGVL 191 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~g~~ 191 (507)
+.++++||||+++++ .. .....+.+....... .. ..+.++...+....... ...+.++++.. .|+.
T Consensus 75 ~~~~~~G~Ttv~~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 151 (380)
T PRK09237 75 EVGVRSGVTTVVDAG-SA--GADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIV 151 (380)
T ss_pred HHHHhCCcCEEEECC-CC--CCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEE
Confidence 778999999999986 32 234566666555443 22 23334443332222111 23455666664 4788
Q ss_pred EEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHH
Q 010547 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271 (507)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 271 (507)
+++.++.+.... ....+.++.....+++.++++.+|+++... + ..+
T Consensus 152 glk~~~~~~v~~---~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~----------------------------~---~~~ 197 (380)
T PRK09237 152 GIKARMSSSVVG---DNGIEPLELAKAIAAEANLPLMVHIGNPPP----------------------------S---LEE 197 (380)
T ss_pred EEEEEEeccccc---ccCCchHHHHHHHHHhcCCCEEEEcCCCCC----------------------------C---HHH
Confidence 999887543211 111133444455566899999999965431 1 122
Q ss_pred HHHHHHhhccCCCCCCceEEEEecCChh---------HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcC
Q 010547 272 LLTVAKDTRTDGPAEGAHLHIVHLSDAS---------SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAP 342 (507)
Q Consensus 272 ~~~l~~~~~~~~~~~g~~~~~~h~~~~~---------~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p 342 (507)
+..+... + ..+.|+.+.. ...+.+.+..++|..+..... .
T Consensus 198 l~~~l~~--------g--~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g---------------~------ 246 (380)
T PRK09237 198 ILELLRP--------G--DILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHG---------------T------ 246 (380)
T ss_pred HHhhccC--------C--CEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCC---------------C------
Confidence 2222221 2 1245555321 233566666677765443110 0
Q ss_pred CCCChhhHHHHHHHHhcCC-eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhh
Q 010547 343 PIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 421 (507)
Q Consensus 343 ~~~~~~~~~~~~~~l~~G~-~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~ 421 (507)
.......+.+++.+|+ ..+++||..+.+... +-...+...+..+.+.|++++++++++|.
T Consensus 247 ---~~~~~~~~~~l~~~g~~~~~l~tD~~~~~~~~----------------~~~~~l~~~~~~~~~~g~~~~~al~~aT~ 307 (380)
T PRK09237 247 ---ASFSFKVAEAAIAAGILPDTISTDIYCRNRIN----------------GPVYSLATVMSKFLALGMPLEEVIAAVTK 307 (380)
T ss_pred ---CcccHHHHHHHHHCCCCceEEECCCCCCCccc----------------chHhHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 0011123345667785 568999975432110 00011333444455679999999999999
Q ss_pred chhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe---eEEEEEEECCEEEEecCccc
Q 010547 422 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHA 496 (507)
Q Consensus 422 n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G~~v~~~g~~~ 496 (507)
|||++||+++.|+|++|+.|||++++.++.. .+. .+++...... ..|+.||++||+||.+-...
T Consensus 308 n~A~~lgl~~~G~l~~G~~ADlvv~~~~~~~-~~~----------~d~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~~ 374 (380)
T PRK09237 308 NAADALRLPELGRLQVGSDADLTLFTLKDGP-FTL----------TDSEGDSLIGERLLTPLATVRGGKVVLTEQGSA 374 (380)
T ss_pred HHHHHcCCCCCCcCCCCCcCCEEEEeCCCCC-ccc----------cCCCCCEEEecCCCcceEEEECCEEEEccCccc
Confidence 9999999966899999999999999965432 110 1222222221 36999999999999874433
|
|
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-30 Score=257.77 Aligned_cols=354 Identities=17% Similarity=0.154 Sum_probs=209.1
Q ss_pred EEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC----CCCCC---C---
Q 010547 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP----GRTEW---E--- 116 (507)
Q Consensus 47 i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~----~~~~~---~--- 116 (507)
|+|++|+|+. ..+++|+|+||+|++|++..+.+ ++.++||++|++|+|||||+|+|+... ..... .
T Consensus 2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~---~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~ 77 (398)
T cd01293 2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVP---PDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLE 77 (398)
T ss_pred eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCC---CCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHH
Confidence 7899999974 47889999999999999875532 368999999999999999999999742 11100 0
Q ss_pred ---------------C----hhHHHHHHHhCCceEEEeCCCCCCCCCC--CHHHHHHHHHHHhcCceeeEEEeccc-cCC
Q 010547 117 ---------------G----FPSGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKVDAAEKRIYVDVGFWGGL-VPE 174 (507)
Q Consensus 117 ---------------~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 174 (507)
. ....+..++++||||+.++. ...+... ..+......+................ ...
T Consensus 78 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (398)
T cd01293 78 AIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHV-DVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLS 156 (398)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeee-cccccccchHHHHHHHHHHHhhccceEEEEeccCccccC
Confidence 0 12235677899999998764 2222211 12223233222222222211111100 001
Q ss_pred CcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccc
Q 010547 175 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (507)
Q Consensus 175 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 254 (507)
.....+.+++..+.|..-+..+. . ......+++.++++++.|++++.++.+|+.+...
T Consensus 157 ~~~~~~~v~~~~~~g~~~~~~~~-~---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~------------------ 214 (398)
T cd01293 157 TPGGEELMREALKMGADVVGGIP-P---AEIDEDGEESLDTLFELAQEHGLDIDLHLDETDD------------------ 214 (398)
T ss_pred CCCHHHHHHHHHHhCCCEEeCCC-C---CcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCC------------------
Confidence 13445667777766653222211 1 1123567899999999999999999999854321
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh-----HHHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS-----SSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~-----~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
+ ....+.+.++...+.+. ..++.+.|+.... +..+.++.+++.|+.+.. ||........
T Consensus 215 ------~---~~~~~~~~~~~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~--~p~s~~~l~~ 278 (398)
T cd01293 215 ------P---GSRTLEELAEEAERRGM-----QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVS--LPPINLYLQG 278 (398)
T ss_pred ------c---chhHHHHHHHHHHHhCC-----CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEe--CCCcchhhcc
Confidence 0 01122333444444311 1246777876431 224668888899987654 5532111000
Q ss_pred CCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCC--CChhhhccccCCccccCCCCchhhhHHHHHHHHHHh
Q 010547 330 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP--TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 407 (507)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 407 (507)
. . ...| .......+.++++.|+++++|||... +.... .... +..+......
T Consensus 279 ~-~------~~~~---~~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~-------------~~~~----~~~~~~~~~~ 331 (398)
T cd01293 279 R-E------DTTP---KRRGVTPVKELRAAGVNVALGSDNVRDPWYPFG-------------SGDM----LEVANLAAHI 331 (398)
T ss_pred c-c------cCCC---CCCCCCcHHHHHHCCCeEEECCCCCCCCCcCCC-------------CCCH----HHHHHHHHHH
Confidence 0 0 0000 11223456788899999999999742 10000 0011 1111111222
Q ss_pred cCC----CHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEE
Q 010547 408 YGV----TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 483 (507)
Q Consensus 408 ~gl----s~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~ 483 (507)
.++ +.+++++++|.|+|+++|+ +.|+|++||.||||++|.++..++. .. ..++..||
T Consensus 332 ~~~~~~~~~~~al~~aT~~~A~~lg~-~~G~l~~Gk~ADlv~~d~~~~~~~~------~~------------~~~~~~v~ 392 (398)
T cd01293 332 AQLGTPEDLALALDLITGNAARALGL-EDYGIKVGCPADLVLLDAEDVAEAV------AR------------QPPRRVVI 392 (398)
T ss_pred HcCCChhhHHHHHHhcChhhhhhcCC-cCcccccCCcceEEEECCCCHHHHH------hc------------CCCccEEE
Confidence 344 3478999999999999999 6799999999999999988643320 00 12689999
Q ss_pred ECCEEE
Q 010547 484 SRGNLV 489 (507)
Q Consensus 484 v~G~~v 489 (507)
++|+++
T Consensus 393 ~~G~~~ 398 (398)
T cd01293 393 RKGRVV 398 (398)
T ss_pred ECCEEC
Confidence 999874
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=264.86 Aligned_cols=354 Identities=21% Similarity=0.285 Sum_probs=215.9
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC--CC-------CCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP--RN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~--~~-------~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
..+++|+|++|+|..++.+++|.|+||||++|++...+. .. ..+.++||++|++|+|||||+|+|+..+.+
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~Pg~ 412 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICPQL 412 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCCcH
Confidence 567999999999977788999999999999999753221 10 014689999999999999999999875432
Q ss_pred CCCCChhHHHHHHHhCCceEEEeCCCC----CCCCC--CCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH
Q 010547 113 TEWEGFPSGTKAAAAGGITTLIDMPLN----SDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (507)
Q Consensus 113 ~~~~~~~~~~~~~l~~GvTt~~~~~~~----~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (507)
.+.++++|+||++..+++ +.|.. .....+...++..+ ...+++.+++.. .....+++.++.
T Consensus 413 ---------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gkG---~~s~l~eL~eli 479 (837)
T PLN02303 413 ---------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLPLNFGFTGKG---NTAKPEGLHEII 479 (837)
T ss_pred ---------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCCCcEEEEccC---cccCHHHHHHHH
Confidence 266777788887776422 22333 24666777666444 346777776532 224567788888
Q ss_pred HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHH
Q 010547 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (507)
Q Consensus 187 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (507)
+.|+.+++.+. .+..+++.+.++++.|++++.++.+|+|+... .
T Consensus 480 eaGa~GfK~h~-------d~gvTpelL~raLe~AkelGVpVaIHAEdLnE-----------------------------~ 523 (837)
T PLN02303 480 KAGAMGLKLHE-------DWGTTPAAIDNCLDVAEEYDIQVTIHTDTLNE-----------------------------S 523 (837)
T ss_pred HcCcEEEEECC-------CCCCCHHHHHHHHHHHHHcCCEEEEecCcccc-----------------------------c
Confidence 89999999742 23567899999999999999999999977322 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEc---
Q 010547 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA--- 341 (507)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--- 341 (507)
..++..++... +.++|..|....- -..+.++.+...++..+ .+.| ...++.+.+...-...+.+
T Consensus 524 G~vE~t~~a~G---------~RpIh~~h~~Ga~gghapdi~~~~~~~nvlps-stnp-t~p~t~nt~~e~~dm~m~~h~l 592 (837)
T PLN02303 524 GCVEHSIAAFK---------GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPS-STNP-TRPYTKNTIDEHLDMLMVCHHL 592 (837)
T ss_pred chHHHHHHHHC---------CChHHHHHhcCCCCCCCcHHHHhcCCCCccCC-CCCC-CCCCccCchhhhcCeEEeecCC
Confidence 11222222222 3334444432110 01223443333332211 1122 2223333333222222222
Q ss_pred -CCCCC----hh---hHHHH--HHH-HhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh---
Q 010547 342 -PPIRD----AA---NKEKL--WEA-LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--- 407 (507)
Q Consensus 342 -p~~~~----~~---~~~~~--~~~-l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 407 (507)
|.+.. .. ..+.+ -.. -..|+...+.||..+--. ++-+-.++.....+...
T Consensus 593 ~~~~~edvafa~srir~~tiaaed~l~d~G~~s~~~SDs~amgr----------------~ge~i~r~~q~A~k~~~~~g 656 (837)
T PLN02303 593 DKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGR----------------IGEVITRTWQTAHKMKSQRG 656 (837)
T ss_pred CCCCcchhhhhhhhccchhhccchhhhccCCEEEEeccchhhCc----------------ccceeeehHHHHHHHHHhcC
Confidence 22110 00 00111 112 224899999999652210 01000001111111111
Q ss_pred ---------cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee
Q 010547 408 ---------YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477 (507)
Q Consensus 408 ---------~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (507)
-.+++++++++.|.|||+++|+ +.+|+|++||.||||||+++. + . .
T Consensus 657 ~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~---------f--g-~------------ 712 (837)
T PLN02303 657 ALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAF---------F--G-A------------ 712 (837)
T ss_pred CCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccc---------c--C-C------------
Confidence 1257799999999999999999 788999999999999999542 1 1 1
Q ss_pred EEEEEEECCEEEEec-Ccc
Q 010547 478 KVLATISRGNLVYKE-GNH 495 (507)
Q Consensus 478 ~V~~v~v~G~~v~~~-g~~ 495 (507)
.+..||++|++||.. |..
T Consensus 713 ~~~~vi~~G~ivy~~~gd~ 731 (837)
T PLN02303 713 KPEMVIKGGQIAWAQMGDP 731 (837)
T ss_pred CeeEEEECCEEEEccCCCc
Confidence 589999999999976 443
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=256.20 Aligned_cols=352 Identities=19% Similarity=0.152 Sum_probs=196.8
Q ss_pred eeeeEEEeCCEEEEeecCCCCCCC-CCCCcEEecCCCEEecceeecccccCCCCCC--------CC--------C----C
Q 010547 59 ISGAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------EW--------E----G 117 (507)
Q Consensus 59 ~~~~I~I~dG~I~~Vg~~~~~~~~-~~~~~viD~~g~~v~PGfID~H~H~~~~~~~--------~~--------~----~ 117 (507)
.+++|+|+||+|++||+..+.... +.+.++||++|++|+|||||+|+|+...... .| + +
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 478999999999999986543211 1256899999999999999999998642111 00 0 0
Q ss_pred -------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC----C-cccHHHHHHH
Q 010547 118 -------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE----N-AYNASALEAL 185 (507)
Q Consensus 118 -------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~ 185 (507)
......+++++||||++++. ...+ .....+.+.......+............+. . ....+..+++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~--~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 161 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFA-TVHP--ESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKAL 161 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc-ccCH--HHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHH
Confidence 01123578999999999875 2111 111222222222222221211111000000 0 1112222333
Q ss_pred H----HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEecCCcc-cchhhhhcccCcCCccccccccCC
Q 010547 186 L----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKT 259 (507)
Q Consensus 186 ~----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 259 (507)
. ..|. ++..+.+ ...+.+++++++++.+.|+++ +.++.+|+.+.. .........+ .
T Consensus 162 i~~~~~~g~--i~~~~~~---~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~-------------~ 223 (401)
T TIGR02967 162 IERWHGKGR--LLYAVTP---RFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFP-------------E 223 (401)
T ss_pred HHHHhCcCC--ceEEEEC---CcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcC-------------C
Confidence 2 2232 3333322 333468899999999999999 999999985432 1111111000 0
Q ss_pred CChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCcee
Q 010547 260 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 339 (507)
Q Consensus 260 ~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 339 (507)
.| ...+...+.+ ..|.++.+.|+... ..+.++.+++.|+.+. +||...... +
T Consensus 224 ~~---------~~~~~l~~~g----~lg~~~~~~H~~~~--~~~~~~~l~~~g~~v~--~~P~~~~~~-------~---- 275 (401)
T TIGR02967 224 AK---------DYLDVYDHYG----LLGRRSVFAHCIHL--SDEECQRLAETGAAIA--HCPTSNLFL-------G---- 275 (401)
T ss_pred CC---------cHHHHHHHCC----CCCCCeEEEecccC--CHHHHHHHHHcCCeEE--EChHHHHHh-------c----
Confidence 00 1122223221 11556778888763 3446777888887654 366321100 0
Q ss_pred EcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHH--HHHHHhcCCCHHHHHH
Q 010547 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT--WSYGRKYGVTLEQLAS 417 (507)
Q Consensus 340 ~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~gls~~~al~ 417 (507)
....++.+++++|+.+++|||..+.+... .++. +... +......+++++++++
T Consensus 276 --------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~l~ 330 (401)
T TIGR02967 276 --------SGLFNLKKALEHGVRVGLGTDVGGGTSFS----------------MLQT-LREAYKVSQLQGARLSPFEAFY 330 (401)
T ss_pred --------cCCCCHHHHHHCCCeEEEecCCCCCCCcC----------------HHHH-HHHHHHHhhhcCCCCCHHHHHH
Confidence 01123457788899999999975321110 0110 1111 1112235699999999
Q ss_pred HHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe---eEEEEEEECC
Q 010547 418 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRG 486 (507)
Q Consensus 418 ~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G 486 (507)
++|.|||++||+ +++|+|++||.|||+++|.+.+...+.. ....... .+|+..+... ..|+.|||+|
T Consensus 331 ~aT~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~-~~~~~~~-~~~~~~~v~~~~~~~v~~v~v~G 401 (401)
T TIGR02967 331 LATLGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALR-FEGADTL-EDKLFKLMYLGDDRNVAETYVAG 401 (401)
T ss_pred HHHHHHHHHhCCcCCccccCCCCccCEEEEcCCCCcccccc-cccccch-hhHHHHheeecCccceeEEEeCC
Confidence 999999999999 5689999999999999998764322100 0000001 3444444443 3599999998
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=239.29 Aligned_cols=329 Identities=18% Similarity=0.215 Sum_probs=255.1
Q ss_pred EEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCc--eeeEEEecccc
Q 010547 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLV 172 (507)
Q Consensus 95 ~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 172 (507)
+.+|-=-|+|+|+.++ .+.....-+.+.|||++++++ .+.|.....+.+....+.+.... .+++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vt~vv~mP-nt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~ 74 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDG------AMLKAVLPYTSEIFSRAIVMP-NLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLY 74 (341)
T ss_pred ceecCccceeeeccCc------hHHHHHHHHHHhhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEE
Confidence 4567778999999874 366777778888899999999 77787777888877777776655 36888888886
Q ss_pred CCCcccHHHHHHHHHc-CCcEEEEcccCCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCcCC
Q 010547 173 PENAYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLD 249 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~~~ 249 (507)
...+...++++++.+. |+.++|.|+...+.. +.+..+++.+.++++.+++.|.++.+|+++... +..
T Consensus 75 ~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~---------- 144 (341)
T TIGR00856 75 LTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI---------- 144 (341)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc----------
Confidence 5554466888888776 999999986432211 223345689999999999999999999987521 000
Q ss_pred ccccccccCCCChhHHHHHHHH-HHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccc
Q 010547 250 TRSYSTYLKTRPPSWEEAAIRE-LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (507)
Q Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~-~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~ 328 (507)
...+..++.+ +..++.+ .++.++|+.|+++. .+++.++.++. .+++++||||+.++.
T Consensus 145 ------------~~~e~~a~~~~i~~lA~~------~~~~~~~i~H~st~-~~~~~i~~a~~---~vt~E~~ph~L~l~~ 202 (341)
T TIGR00856 145 ------------FDREARFIESVLEPLRQR------FPALKVVLEHITTK-DAIDYVEDGNN---RLAATITPQHLMFTR 202 (341)
T ss_pred ------------ccchhhhhHHHHHHHHHH------ccCCeEEEEecCcH-HHHHHHHHcCC---CEEEEEcHHHHhccH
Confidence 0012223333 3333333 34788999999998 99999988754 389999999999999
Q ss_pred cCCCC--CCCceeEcCCCCChhhHHHHHHHHhcCCee-EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH
Q 010547 329 EEIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405 (507)
Q Consensus 329 ~~~~~--~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~-~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 405 (507)
+.+.. .+..++++||+|...+++.+++++.+|.++ .++|||+|+....+.. +..+.|+.+++..++.++...
T Consensus 203 ~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~~~ 277 (341)
T TIGR00856 203 NDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAEVF 277 (341)
T ss_pred HHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHHHH
Confidence 98865 578999999999999999999999999999 6999999998776632 136789999999999888654
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCcccc-CcEEeeEE
Q 010547 406 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL-GRRLSGKV 479 (507)
Q Consensus 406 ~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V 479 (507)
+.++++++++++.+.|||+.+|++ .| +|||++++ ..|.++.. .+.++.. ++||. +..+.++|
T Consensus 278 -~~~~~l~~~v~~~s~nPAk~~gl~-~~------dAdi~~~~--~~~~i~~~-~~~s~~~-~sp~~~~~~~~~~v 340 (341)
T TIGR00856 278 -EEMNALENLEAFCSDNGPQFYGLP-VN------STKIELVK--KEQQIPES-IALTDDT-LVPFRAGETLSWSV 340 (341)
T ss_pred -hcCCCHHHHHHHHhHhHHHHhCCC-CC------CceEEEEe--ccEEeCch-hccCCCC-cccccCCcccceee
Confidence 448999999999999999999993 34 89999994 67888877 7778888 99994 66655555
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-29 Score=249.99 Aligned_cols=351 Identities=18% Similarity=0.150 Sum_probs=195.9
Q ss_pred ceeeeEEEeCCEEEEeecCCCCC-CCCCCCcEEecCCCEEecceeecccccCCCCCC---------CC--------C---
Q 010547 58 VISGAVEIKEGNIISIVSEEDWP-RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW--------E--- 116 (507)
Q Consensus 58 ~~~~~I~I~dG~I~~Vg~~~~~~-~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---------~~--------~--- 116 (507)
+.+++|+|+||+|++||+..+.. ..+.++++||++|++|+|||||+|+|+...... .| +
T Consensus 24 ~~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~ 103 (429)
T cd01303 24 VEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKF 103 (429)
T ss_pred ECCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhc
Confidence 34899999999999999865432 112357899999999999999999998643111 00 0
Q ss_pred ----C----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc---CceeeEEEeccccCCC--cc---cH-
Q 010547 117 ----G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPEN--AY---NA- 179 (507)
Q Consensus 117 ----~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~---~~- 179 (507)
. ....+.+++++||||++++. ... ........+++.. +..+.........+.. .. ..
T Consensus 104 ~~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~-----~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (429)
T cd01303 104 ADPAYAREVYGRFLDELLRNGTTTACYFA-TIH-----PESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYR 177 (429)
T ss_pred CCHHHHHHHHHHHHHHHHhCCceEEEeec-ccC-----hhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHH
Confidence 0 11233567899999999875 111 1222333333332 2222111110000100 10 11
Q ss_pred ---HHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcC-CcEEEecCCccc-chhhhhcccCcCCccccc
Q 010547 180 ---SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEMEKG-SERHVKLEDDTLDTRSYS 254 (507)
Q Consensus 180 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~-~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~ 254 (507)
+.++.+...+ ..+...+.+ ......+++.++++.+.|++++ .++.+|+.+... +......
T Consensus 178 ~~~~~i~~~~~~~-~~v~~~~~p---~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~----------- 242 (429)
T cd01303 178 DTKRLIERWHGKS-GRVKPAITP---RFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKEL----------- 242 (429)
T ss_pred HHHHHHHHHhCcC-CceEEEEec---CcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHH-----------
Confidence 1222322221 112222222 2334678999999999999999 999999854221 1100000
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC
Q 010547 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334 (507)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 334 (507)
.+. .....+.+.+.+ ..+.++.+.|+..- +.+.++.+++.|+.+.. ||..... +
T Consensus 243 -----~g~------~~~p~~~l~~~G----~l~~~~~l~H~~~l--~~~~~~~l~~~g~~v~~--~P~sn~~----l--- 296 (429)
T cd01303 243 -----FPG------ARDYLDVYDKYG----LLTEKTVLAHCVHL--SEEEFNLLKERGASVAH--CPTSNLF----L--- 296 (429)
T ss_pred -----cCC------CCCHHHHHHHCC----CCCCCcEEEeCCCC--CHHHHHHHHHcCCEEEE--Cccchhh----h---
Confidence 000 001122222221 11456788888863 34567777788876543 6632110 0
Q ss_pred CCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhH-HHHHHHHH------Hh
Q 010547 335 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG------RK 407 (507)
Q Consensus 335 ~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~------~~ 407 (507)
.....++.++++.|+.+++|||..+.+... .++.. +....... ..
T Consensus 297 ------------~~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d----------------~~~~~~~~~~~~~~~~~~~~~~ 348 (429)
T cd01303 297 ------------GSGLFDVRKLLDAGIKVGLGTDVGGGTSFS----------------MLDTLRQAYKVSRLLGYELGGH 348 (429)
T ss_pred ------------ccCCCCHHHHHHCCCeEEEeccCCCCCCcc----------------HHHHHHHHHHHHHhhccccCCc
Confidence 011224567888999999999976432111 01110 11111111 12
Q ss_pred cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEe-CCCCCcccCCCCCccccCcEEe---eEEEEE
Q 010547 408 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFEL-DNDHPVHMKHPSISAYLGRRLS---GKVLAT 482 (507)
Q Consensus 408 ~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~V~~v 482 (507)
.+++++++++++|.|||+++|+ +++|+|++||+||||++|.+.+... +.. .+.... .+|+..+... ..|+.|
T Consensus 349 ~~~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~--~~~~~~-~d~~~~lV~~~~~~~V~~v 425 (429)
T cd01303 349 AKLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRM--FRVESL-EEALFKFLYLGDDRNIREV 425 (429)
T ss_pred CCCCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCCcccccccc--ccccch-hhHHHHHeeeCCCCCeeEE
Confidence 3579999999999999999999 6689999999999999998865322 110 000000 2344444443 459999
Q ss_pred EECC
Q 010547 483 ISRG 486 (507)
Q Consensus 483 ~v~G 486 (507)
||+|
T Consensus 426 ~V~G 429 (429)
T cd01303 426 YVAG 429 (429)
T ss_pred EeCC
Confidence 9998
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=234.97 Aligned_cols=343 Identities=20% Similarity=0.253 Sum_probs=214.8
Q ss_pred EEEEecEEECCCCcee-eeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC----CChh
Q 010547 45 YWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW----EGFP 119 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~-~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~----~~~~ 119 (507)
++|+|++|+++.++.+ +.|.|+||+|.+|.+ .+.+ .+.+++|.+|.+|.|||||+|+|.+.+..... +.+.
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p---~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~ 77 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELP---ADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLE 77 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCC---CcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHH
Confidence 5789999999999775 599999999999998 3333 37899999999999999999999988744432 4577
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc------CceeeEEEeccccCCCcccHHHHHHHHHcCCcEE
Q 010547 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK------RIYVDVGFWGGLVPENAYNASALEALLNAGVLGL 193 (507)
Q Consensus 120 ~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 193 (507)
..++..+++|||+++... -| ...+.+.+.++.+.. ...+.++..+++.... +.|+...
T Consensus 78 ~i~~~~~~~GtTsfLpT~-iT----~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~-----------kkGAh~~ 141 (380)
T COG1820 78 TMAEAHLRHGTTSFLPTL-IT----ASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPE-----------KKGAHNP 141 (380)
T ss_pred HHHHHhhhcCeeeeeeec-cc----CCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHh-----------hccCCCH
Confidence 788899999999999654 22 334444444433321 2234444444443322 2333322
Q ss_pred EEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHH
Q 010547 194 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 273 (507)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 273 (507)
.....++++++.++++.++..-..+.+.+|.... .+++
T Consensus 142 ---------~~ir~~~~~~~~~~~~~a~g~i~~vTlAPE~~~~---------------------------------~e~i 179 (380)
T COG1820 142 ---------EYIRPPDPEELEQLIAAADGLIKLVTLAPELDGT---------------------------------KELI 179 (380)
T ss_pred ---------HHhCCCCHHHHHHHHhhccCceEEEEECCCCCCC---------------------------------HHHH
Confidence 1123467788888887777633344444443321 2344
Q ss_pred HHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCc----eeEcCC------
Q 010547 274 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR----FKCAPP------ 343 (507)
Q Consensus 274 ~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~p~------ 343 (507)
..+.+. |..+.+.|.. ...+..+.+.+.|.... .|+....+.+...... ....|.
T Consensus 180 ~~l~~~-------giivs~GHS~---Atye~~~~a~~~Ga~~~-----THlfNaMs~l~hREPGvvGA~L~~~~~~~eiI 244 (380)
T COG1820 180 RLLANA-------GIVVSIGHSN---ATYEQARAAFEAGATFV-----THLFNAMSGLHHREPGVVGAALDNPDVYAEII 244 (380)
T ss_pred HHHHhC-------CeEEEecCcc---ccHHHHHHHHHhCccEE-----EeeccCCCCCCCCCCcccceeecCCCeEEEEE
Confidence 444433 6666666654 34666666667776532 2333333333221110 011111
Q ss_pred ---CCChhhHHHHHHHHhcCCeeEEeCCCCCCChhh----------hccccCCccccCCCCchhhhHHHHHHHHHH-hcC
Q 010547 344 ---IRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL----------KLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYG 409 (507)
Q Consensus 344 ---~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~g 409 (507)
++-....-.+....+-+-.+.+-||..+..... -.+..|.....-++++|....|...++.+. ..+
T Consensus 245 aDG~HVhP~~~~ia~~~kg~~~i~LVTDam~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~ 324 (380)
T COG1820 245 ADGVHVHPAAIRLALKAKGGDKIVLVTDAMAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGG 324 (380)
T ss_pred ccCcccCHHHHHHHHhccCCceEEEEEccccccCCCCccEEECCEEEEEECCEEECCCCceeeeeeeHHHHHHHHHHHhC
Confidence 111111111122222234678888875432211 112233333345677777777777777554 457
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEE
Q 010547 410 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 488 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~ 488 (507)
++++||++|+|.+||++||+ +++|+|++||.||||+||.|- +|..||++|++
T Consensus 325 ~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d~---------------------------~v~~T~i~G~~ 377 (380)
T COG1820 325 ISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDL---------------------------NVKATWINGEK 377 (380)
T ss_pred CCHHHHHHHhhhhHHHHhCCcCcccccCCCcccCEEEECCCC---------------------------cEEEEEECCEE
Confidence 99999999999999999999 777999999999999999652 79999999999
Q ss_pred EEe
Q 010547 489 VYK 491 (507)
Q Consensus 489 v~~ 491 (507)
+++
T Consensus 378 ~~~ 380 (380)
T COG1820 378 VFN 380 (380)
T ss_pred eeC
Confidence 873
|
|
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=244.53 Aligned_cols=366 Identities=17% Similarity=0.209 Sum_probs=214.3
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC---C---CC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---T---EW 115 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~---~---~~ 115 (507)
...++|+|++++++.. ..+|+|+||+|++|++..+.+. .+.++||++|++|+|||||+|+|+..... . ..
T Consensus 3 ~~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~~--~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~ 78 (426)
T PRK09230 3 NALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEASL--EAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQS 78 (426)
T ss_pred CceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCCC--CCCceEeCCCCEeccceeEEEEccccceecCCCccCCC
Confidence 4578999999988643 3689999999999998643211 25689999999999999999999975311 0 00
Q ss_pred -------------------CC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc
Q 010547 116 -------------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (507)
Q Consensus 116 -------------------~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (507)
+. ....+..++++|||++.++.....+.....+.+.+..+..+....+.+.......
T Consensus 79 ~~l~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~ 158 (426)
T PRK09230 79 GTLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEG 158 (426)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHHHHHHHHHHHhhCcceEEEEeccCcc
Confidence 00 1223456789999999988621111111123333333333333333333221110
Q ss_pred -CCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCC---CCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcC
Q 010547 173 -PENAYNASALEALLNAGVLGLKSFMCPSGINDFPM---TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 248 (507)
Q Consensus 173 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~ 248 (507)
...+...+.+.+..+.+..-+.. . +..+. .+++.+..+++.|++++.++.+|+.+....
T Consensus 159 ~~~~~~~~~~l~~a~~~~~~~vg~-~-----p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~----------- 221 (426)
T PRK09230 159 ILSYPNGEALLEEALRLGADVVGA-I-----PHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDE----------- 221 (426)
T ss_pred ccCCccHHHHHHHHHHcCCCEEeC-C-----CCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCc-----------
Confidence 11122334555555554432221 1 11111 247889999999999999999998643320
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh-----HHHHHHHHHHhCCCCEEEeccccc
Q 010547 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS-----SSLDLLMEAKTNGDSITVETCPHY 323 (507)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~-----~~~~~i~~~~~~g~~i~~~~~~~~ 323 (507)
.........++..+.+. +.++.+.|+..-. ...+.++.+++.|+.+.. ||..
T Consensus 222 ----------------~~~~~~~~~~~~~~~gl-----~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~--cP~s 278 (426)
T PRK09230 222 ----------------QSRFVETVAALAHREGM-----GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVA--NPLV 278 (426)
T ss_pred ----------------chHHHHHHHHHHHHhCC-----CCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEE--Ccch
Confidence 00112334444454422 5568888887531 256678888888876544 6642
Q ss_pred ccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH
Q 010547 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 403 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 403 (507)
-..... .....| ......++.+++++|+.+++|||+...... ..+....++. +.....
T Consensus 279 n~~l~~-------~~~~~p---~~~g~~pi~~l~~aGv~V~lGTD~~~d~~~-----------~~~~~d~~~~-~~~~~~ 336 (426)
T PRK09230 279 NIHLQG-------RFDTYP---KRRGITRVKEMLEAGINVCFGHDDVFDPWY-----------PLGTANMLQV-LHMGLH 336 (426)
T ss_pred hhhhcC-------CCCCCC---CCCCCcCHHHHHHCCCeEEEecCCCCCCCc-----------CCCCCCHHHH-HHHHHH
Confidence 111000 000011 112234567889999999999996432110 0011122211 111110
Q ss_pred HHHhcCC-CHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEE
Q 010547 404 YGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 482 (507)
Q Consensus 404 ~~~~~gl-s~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 482 (507)
....... +++++++|+|.|||++||+++.| |++||.||||++|.+++..+. +. ...+..|
T Consensus 337 ~~~~~~~~~~~~~l~maT~~gA~alg~~~~g-le~G~~ADlv~~~~~~~~~~~------~~------------~~~~~~v 397 (426)
T PRK09230 337 VCQLMGYGQINDGLNLITTHSARTLNLQDYG-IEVGNPANLIILPAENGFDAV------RR------------QVPVRYS 397 (426)
T ss_pred HHhhCChhhHHHHHHHHhcchhHHhCCCCcC-CCCCCcCCEEEEeCCCHHHHH------hc------------cCCceEE
Confidence 1111112 36899999999999999995577 999999999999975533221 11 1258999
Q ss_pred EECCEEEEec
Q 010547 483 ISRGNLVYKE 492 (507)
Q Consensus 483 ~v~G~~v~~~ 492 (507)
+++|++|+..
T Consensus 398 ~~~G~~v~~~ 407 (426)
T PRK09230 398 IRHGKVIAET 407 (426)
T ss_pred EECCEEEecc
Confidence 9999999965
|
|
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=252.00 Aligned_cols=366 Identities=17% Similarity=0.103 Sum_probs=198.7
Q ss_pred EEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC------
Q 010547 45 YWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------ 114 (507)
Q Consensus 45 ~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~------ 114 (507)
++|+|++|++++. +.+++|+|+ |+|++||+..+.+..+++.++||+.|++|+|||||+|+|+.......
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 5799999998773 357899999 99999998543221122456999999999999999999996431110
Q ss_pred ---C-------------CC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc-CceeeEEE-ecccc
Q 010547 115 ---W-------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGF-WGGLV 172 (507)
Q Consensus 115 ---~-------------~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~ 172 (507)
| +. ......+++++||||+.++. .. + .. .++... +...-++. ..+..
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~-~~-~-----~~----~~a~~~~GiR~~~~~~~~~~~ 149 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAIS-SF-G-----ID----LEICAKSPLRVVFFNEILGSN 149 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEee-cc-h-----hh----HHHHHhcCCeEEEEeeeeCCC
Confidence 1 00 01233467999999999774 11 1 11 122222 11111111 00111
Q ss_pred CCC-cccHH-HHHHHHHc---CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcc-cchhhhhcccC
Q 010547 173 PEN-AYNAS-ALEALLNA---GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDD 246 (507)
Q Consensus 173 ~~~-~~~~~-~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~-~~~~~~~~~~~ 246 (507)
... ....+ .+...... ....+...+.+ +....++++.++++.+.|++++.++.+|+.+.. +.+......+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap---h~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~ 226 (408)
T PRK08418 150 ASAVDELYQDFLARFEESKKFKSKKFIPAIAI---HSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGW 226 (408)
T ss_pred ccchhhhHHHHHHHHHhhhcccCCceeEEEeC---CCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCc
Confidence 100 01111 11121110 11112222222 333467899999999999999999999986533 22222211110
Q ss_pred cCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccc
Q 010547 247 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326 (507)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~ 326 (507)
........+....|.. ..++.+..+ . +.+..+.|+.+ -+.+.++.+++.|..+. +||..-
T Consensus 227 -~~~~~~~~~~~~~~~~---~pv~~l~~~-g---------~~~~~~~H~~~--~~~~di~~la~~g~~v~--~cP~sn-- 286 (408)
T PRK08418 227 -FKKFFEKFLKEPKPLY---TPKEFLELF-K---------GLRTLFTHCVY--ASEEELEKIKSKNASIT--HCPFSN-- 286 (408)
T ss_pred -hhhhhhhhcccccccC---CHHHHHHHh-C---------CCCeEEEeccc--CCHHHHHHHHHcCCcEE--ECHhHH--
Confidence 0000000000000000 011112211 1 23467777776 34456666667776554 466311
Q ss_pred cccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH
Q 010547 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406 (507)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 406 (507)
. .. .....++.++++.|+.+++|||+.+++...++ ++. +........
T Consensus 287 ----~-------~l------g~g~~p~~~~~~~Gi~v~lGtD~~~~~~~~~~---------------~~e-m~~~~~~~~ 333 (408)
T PRK08418 287 ----R-------LL------SNKALDLEKAKKAGINYSIATDGLSSNISLSL---------------LDE-LRAALLTHA 333 (408)
T ss_pred ----H-------Hh------cCCCccHHHHHhCCCeEEEeCCCCCCCCCcCH---------------HHH-HHHHHHHhc
Confidence 0 00 01123456788999999999997654332211 111 111010000
Q ss_pred --hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEE
Q 010547 407 --KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484 (507)
Q Consensus 407 --~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v 484 (507)
....+++++++++|.|||++||++ .|+|++||.||||++|.+.+. .+.. +.|+..+.....|..|||
T Consensus 334 ~~~~~~~~~~~l~~aT~~gA~alg~~-~G~l~~G~~ADlv~~d~~~~~-~~~~---------~~~~~~~~~~~~v~~v~v 402 (408)
T PRK08418 334 NMPLLELAKILLLSATRYGAKALGLN-NGEIKEGKDADLSVFELPEEC-TKKE---------QLPLQFILHAKEVKKLFI 402 (408)
T ss_pred cCCccccHHHHHHHHHHHHHHHhCCC-CccccCCCccCEEEEeCCCCC-CChh---------HhHHHHHhccCccceEEE
Confidence 111346899999999999999995 799999999999999976311 1101 222222223347999999
Q ss_pred CCEEE
Q 010547 485 RGNLV 489 (507)
Q Consensus 485 ~G~~v 489 (507)
+|++|
T Consensus 403 ~G~~v 407 (408)
T PRK08418 403 GGKEV 407 (408)
T ss_pred CCEEc
Confidence 99987
|
|
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=245.52 Aligned_cols=370 Identities=20% Similarity=0.228 Sum_probs=219.0
Q ss_pred CCCCcceEEEEecEEECC------------CCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeeccc
Q 010547 38 SLLPYNQYWLTSKRIVTP------------KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105 (507)
Q Consensus 38 ~~~~~~~~~i~n~~i~~~------------~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~ 105 (507)
+...+..++|+|+++-+. ++....+|.|+||||++|++....+ .+.++||++|++|+|||||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~id~H~ 82 (438)
T PRK07583 6 SLPESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAP---DELPAVDLKGRMVWPCFVDMHT 82 (438)
T ss_pred cCCCCCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCC---CCCceecCCCCcccCCccccee
Confidence 345577889999986432 2345679999999999999876422 2578999999999999999999
Q ss_pred ccCCCCCC-------------------------CCCC----hhHHHHHHHhCCceEEEeCCCCCCCC--CCCHHHHHHHH
Q 010547 106 HLDDPGRT-------------------------EWEG----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKV 154 (507)
Q Consensus 106 H~~~~~~~-------------------------~~~~----~~~~~~~~l~~GvTt~~~~~~~~~p~--~~~~~~~~~~~ 154 (507)
|+...... +.++ +....+.++.+|+|+++.+. ...+. ....+.+.+..
T Consensus 83 Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~v-d~~~~~~~~~~~~i~~~~ 161 (438)
T PRK07583 83 HLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHL-DSFAPQAAISWEVFAELR 161 (438)
T ss_pred ccccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeee-ccCCCCcccHHHHHHHHH
Confidence 98543100 0111 33445677899999777665 22121 22233343334
Q ss_pred HHHhcCceeeEEEeccccCCCcccHHHHHHHH-Hc-CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 010547 155 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-NA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (507)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 232 (507)
+..............++........+++.+.. +. |..+.+.++. ...++.+.++++.|+++|.++.+|+.
T Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~~eL~~~v~~~~gv~g~~~~~~--------~~~d~~l~~i~~lA~~~G~~v~vH~~ 233 (438)
T PRK07583 162 EAWAGRIALQAVSLVPLDAYLTDAGERLADLVAEAGGLLGGVTYMN--------PDLDAQLDRLFRLARERGLDLDLHVD 233 (438)
T ss_pred HHhhccCeEEEEEecChhhccCchHHHHHHHHHHcCCEEeCCCCCC--------CCHHHHHHHHHHHHHHhCCCcEEeEC
Confidence 33333332222222222221222224444444 33 4444433221 12568899999999999999999995
Q ss_pred CcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHH
Q 010547 233 MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLME 307 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~-----~~~~~~i~~ 307 (507)
+... + ....+....+...+.+. ..++++.|+..- ....+.++.
T Consensus 234 E~~~------------------------~---~~~~l~~~~~~~~~~G~-----~~~v~i~H~~~l~~~~~~~~~~~i~~ 281 (438)
T PRK07583 234 ETGD------------------------P---ASRTLKAVAEAALRNGF-----EGKVTCGHCCSLAVQPEEQAQATIAL 281 (438)
T ss_pred CCCC------------------------c---hHHHHHHHHHHHHHhCC-----CCCEEEEeccchhcCCHHHHHHHHHH
Confidence 3221 0 11112333333333311 235888888642 122467888
Q ss_pred HHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCcccc
Q 010547 308 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 387 (507)
Q Consensus 308 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~ 387 (507)
+++.|+.+.. ||........... ...|..+ ...++.++++.|+.+++|||+.... |. .
T Consensus 282 la~~gv~vv~--~P~~~~~l~~~~~------~~~p~~~---~~~~v~~l~~aGV~valGtD~~~d~----------~~-p 339 (438)
T PRK07583 282 VAEAGIAIVS--LPMCNLYLQDRQP------GRTPRWR---GVTLVHELKAAGIPVAVASDNCRDP----------FY-A 339 (438)
T ss_pred HHHcCCeEEE--CcchhhhhcCCCc------CCCCCCC---CcchHHHHHHCCCeEEEEeCCCCCC----------CC-C
Confidence 8888877654 5643211110000 0012111 2235677888899999999975311 10 1
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCC
Q 010547 388 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467 (507)
Q Consensus 388 ~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~ 467 (507)
.+....++.... ... ....+.+++++++++|.|||+++|++++|+|++|+.||||++|.++..++.
T Consensus 340 ~g~~~~~~~~~~-a~~-~~~~~~~~~~al~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~------------ 405 (438)
T PRK07583 340 YGDHDMLEVFRE-AVR-ILHLDHPYDDWPAAVTTTPADIMGLPDLGRIAVGAPADLVLFKARSFSELL------------ 405 (438)
T ss_pred CCCcCHHHHHHH-HHH-HHhcCCcHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEcCCCHHHHH------------
Confidence 111222222111 111 122367899999999999999999954899999999999999988644321
Q ss_pred ccccCcEEeeEEEEEEECCEEEEecC
Q 010547 468 SAYLGRRLSGKVLATISRGNLVYKEG 493 (507)
Q Consensus 468 ~~~~~~~~~~~V~~v~v~G~~v~~~g 493 (507)
...+.+..||++|++|.+..
T Consensus 406 ------~~~~~~~~V~~~G~~v~~~~ 425 (438)
T PRK07583 406 ------SRPQSDRIVLRAGKPIDTTL 425 (438)
T ss_pred ------hcCCCccEEEECCEEecccC
Confidence 11124678999999987654
|
|
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=239.70 Aligned_cols=328 Identities=23% Similarity=0.309 Sum_probs=222.0
Q ss_pred CCcceEEEEecEEECC--CCceeeeEEEeCCEEEEe-ecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCC
Q 010547 40 LPYNQYWLTSKRIVTP--KGVISGAVEIKEGNIISI-VSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~--~~~~~~~I~I~dG~I~~V-g~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~ 116 (507)
+...+++++||+++|. ..+..++|+|.+|+|+.| ++.. +++.++||+.|++|.|||||.|.|.......
T Consensus 21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~-----~e~~~~iDa~g~yivPGfID~H~HIESSm~t--- 92 (584)
T COG1001 21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR-----AEATEVIDAAGRYIVPGFIDAHLHIESSMLT--- 92 (584)
T ss_pred CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC-----cccceeecCCCCEeccceeecceeccccccC---
Confidence 5678999999999996 337799999999999995 3332 2378999999999999999999998875443
Q ss_pred ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc--------ccHHHHHHHHH-
Q 010547 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--------YNASALEALLN- 187 (507)
Q Consensus 117 ~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~- 187 (507)
....++..+.+||||++.-| ...-.....+-+...++.+.. .+++++++.+...... -..+.++++..
T Consensus 93 -P~~FA~~Vlp~GtTtvV~DP-HEIaNV~G~~Gi~~ml~~a~~-~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~ 169 (584)
T COG1001 93 -PSEFARAVLPHGTTTVVSDP-HEIANVLGEDGIRFMLDEAKE-TPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEH 169 (584)
T ss_pred -HHHHHHHhhccCceEEeeCc-HHHHhhccHHHHHHHHHHHhh-CCeEEEEecccCccCCccccCCceecHHHHHHHhhC
Confidence 45567788999999999654 222234556777777777664 4666666544322111 14466777776
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHH
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (507)
-.+.++...|.+++- ...++.+-..++.+++.++++..|+......
T Consensus 170 p~Vigl~E~Mn~pgV----i~~D~~~l~kl~a~~~~~k~VdGHapgl~g~------------------------------ 215 (584)
T COG1001 170 PEVIGLGEMMNFPGV----IEGDPDMLAKLEAARKAGKPVDGHAPGLSGK------------------------------ 215 (584)
T ss_pred CCccchhhhcCCchh----ccCCHHHHHHHHHHHHcCCeecccCCCCChH------------------------------
Confidence 456677776655432 3466778888899999999999999554320
Q ss_pred HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh
Q 010547 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347 (507)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (507)
.+...+.. | +...|=.+ ...+.++++ +.|..+..=- ++ ..
T Consensus 216 ~Ln~Y~aa-----------G--i~tDHE~~--t~EEa~~kl-r~Gm~i~iRe---------------GS---------~a 255 (584)
T COG1001 216 ELNAYIAA-----------G--ISTDHEST--TAEEALEKL-RLGMKIMIRE---------------GS---------AA 255 (584)
T ss_pred HHHHHHhc-----------C--CCcCcccC--CHHHHHHHH-hCCcEEEEEc---------------Cc---------hh
Confidence 01111111 1 22333332 223333333 4454432210 00 11
Q ss_pred hhHHHHHHHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhH
Q 010547 348 ANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 425 (507)
Q Consensus 348 ~~~~~~~~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~ 425 (507)
.+...+.+++.+ | -.++++||....+.... .| .+..+.+.+.+.|++|.+|++|+|.|||+
T Consensus 256 ~dl~~l~~~i~e~~~~~~~lcTDD~~p~dl~~---eG--------------hld~~vR~Ai~~Gv~p~~a~qmAtiN~A~ 318 (584)
T COG1001 256 KDLAALLPAITELGSRRVMLCTDDRHPDDLLE---EG--------------HLDRLVRRAIEEGVDPLDAYQMATINPAE 318 (584)
T ss_pred hhHHHHHHHHhhcCCceEEEECCCCChhHhhh---cC--------------CHHHHHHHHHHcCCCHHHHHHHHhcCHHH
Confidence 223333444443 3 35789999775542111 11 16677888999999999999999999999
Q ss_pred HhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCc
Q 010547 426 LAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 426 ~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
.+|+++.|.|+||+.||||+++ |- ++. .|..|+++|+.|.++|+
T Consensus 319 ~~gl~~~G~iAPG~~ADlvi~~-DL------------~~~------------~v~~V~~~G~~v~~~g~ 362 (584)
T COG1001 319 HYGLDDLGLIAPGRRADLVILE-DL------------RNF------------KVTSVLIKGRVVAEDGK 362 (584)
T ss_pred HcCCcccccccCCccccEEEEc-cc------------ccC------------ceeEEEECCEEEecCCc
Confidence 9999779999999999999998 31 122 68999999999999997
|
|
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=241.83 Aligned_cols=364 Identities=16% Similarity=0.150 Sum_probs=208.2
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC---CCC------
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT------ 113 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~---~~~------ 113 (507)
++++|+|++|+++. ...+|+|+||+|++|++..+.. ..++||++|++|+|||||+|+|+... +..
T Consensus 2 ~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~~----~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g 75 (426)
T PRK07572 2 FDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQAE----AAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASG 75 (426)
T ss_pred CcEEEECeEECCCC--eeEEEEEECCEEEEecCCCCCC----cCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCC
Confidence 35789999999865 3678999999999999864321 46899999999999999999999642 110
Q ss_pred ----------------CCCC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe--ccc
Q 010547 114 ----------------EWEG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW--GGL 171 (507)
Q Consensus 114 ----------------~~~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 171 (507)
+.+. ....++.++++|||++.++.....+.......+.+..........+..... .+.
T Consensus 76 ~l~e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~g~ 155 (426)
T PRK07572 76 TLLEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDGV 155 (426)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEEeccChhh
Confidence 0111 223456778999999998741112222122222222221122221112111 111
Q ss_pred cCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcc
Q 010547 172 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (507)
Q Consensus 172 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (507)
. ..+...+.+++..+.|+.-+...... ......+.+.++.++++|++++.++.+|+.+...
T Consensus 156 ~-~~~~~~~~~~~~l~~g~d~iGg~p~~---~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~--------------- 216 (426)
T PRK07572 156 L-RSPGAVDNLERALDMGVDVVGGIPHF---ERTMADGAESVRLLCEIAAERGLRVDMHCDESDD--------------- 216 (426)
T ss_pred c-cCccHHHHHHHHHHcCCCEEeCCCCC---ccccchHHHHHHHHHHHHHHcCCCeEEEECCCCC---------------
Confidence 1 11234556777777776555321100 1001122489999999999999999999944321
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCCEEEecccccccc
Q 010547 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAF 326 (507)
Q Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~-----~~~~~~i~~~~~~g~~i~~~~~~~~~~~ 326 (507)
.....+....+...+.+. .+ .+.+.|+..- ....+.++.+++.|+.+.. ||.....
T Consensus 217 ------------~~~~~~~~~~~~~~~~G~----~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~--~P~~n~~ 277 (426)
T PRK07572 217 ------------PLSRHIETLAAETQRLGL----QG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIA--NPLINIT 277 (426)
T ss_pred ------------hhHHHHHHHHHHHHHhCC----CC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEE--Cchhhhh
Confidence 011122233333333321 13 5777888531 1345678888888876654 5521110
Q ss_pred cccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH
Q 010547 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406 (507)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 406 (507)
. .... ...| .......+.++++.|+.+++|||+... . | ...++...++... ....
T Consensus 278 l----~~~~---~~~~---~~~g~~~v~~l~~~GV~v~lGtD~~~~-~---------~-~~~~~~~~~e~~~----~~~~ 332 (426)
T PRK07572 278 L----QGRH---DTYP---KRRGMTRVPELMAAGINVAFGHDCVMD-P---------W-YSLGSGDMLEVAH----MGLH 332 (426)
T ss_pred h----cCCC---CCCC---CCCCCcCHHHHHHCCCcEEEecCCCCC-C---------C-CCCCCCCHHHHHH----HHHH
Confidence 0 0000 0001 112234567888899999999997421 0 0 0001112222111 1111
Q ss_pred hcCCC----HHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEE
Q 010547 407 KYGVT----LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 482 (507)
Q Consensus 407 ~~gls----~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 482 (507)
..+++ +.++++++|.|||++||+++.| |++||.||||++|.+++. +.+...+.+..|
T Consensus 333 ~~~~~~~~~l~~~l~~aT~~~A~~lgl~~~g-i~~G~~ADlvl~d~~~p~------------------e~i~~~~~~~~V 393 (426)
T PRK07572 333 VAQMTGQDAMRACFDAVTVNPARIMGLEGYG-LEPGCNADLVLLQARDPI------------------EAIRLRAARLAV 393 (426)
T ss_pred HHcCCCHHHHHHHHHHhhcchHHhhCCCCcC-CCCCCcCCEEEEeCCCHH------------------HHHHhcCCceEE
Confidence 22233 4567789999999999995567 999999999999953221 112222368999
Q ss_pred EECCEEEEecCc
Q 010547 483 ISRGNLVYKEGN 494 (507)
Q Consensus 483 ~v~G~~v~~~g~ 494 (507)
|++|++|++...
T Consensus 394 ~~~G~~v~~~~~ 405 (426)
T PRK07572 394 IRRGKVIARTPP 405 (426)
T ss_pred EECCEEEeccCC
Confidence 999999997743
|
|
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=246.06 Aligned_cols=370 Identities=17% Similarity=0.169 Sum_probs=216.1
Q ss_pred ceEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC------
Q 010547 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT------ 113 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~------ 113 (507)
..++|+|..++..++ +.++++.|+||+|+.|++..+.+ .+.+++|++|++|+|||||+|+|+......
T Consensus 2 ~~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~---~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~ 78 (421)
T COG0402 2 TMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGP---PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDL 78 (421)
T ss_pred cceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCC---CCceeecCCCCEeccCccccccchHHHHHhhhhccc
Confidence 456888888887644 35799999999999999987654 268999999999999999999998542111
Q ss_pred ---CC---------------CC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecc-
Q 010547 114 ---EW---------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG- 170 (507)
Q Consensus 114 ---~~---------------~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (507)
.| +. .......++++|||++..+. .. .........+.......+..........
T Consensus 79 ~l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~-~~--~~~~~~~~~~a~~~~g~r~~~~~~~~~~~ 155 (421)
T COG0402 79 PLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHV-DV--VAESADAAFEAALEVGLRAVLGPVLQDVA 155 (421)
T ss_pred chHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCcccccccc-ch--hhhhHHHHHHHHHHhCCeeEeeeccccCC
Confidence 11 01 12334567899999976553 11 0011111222222222222222222111
Q ss_pred c----cCCCc---ccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcc-cchhhhh
Q 010547 171 L----VPENA---YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVK 242 (507)
Q Consensus 171 ~----~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~-~~~~~~~ 242 (507)
+ ....+ ...+.++++...+...+.. .+.....++++.++.+.+++++++.++++|+.+.. .+.....
T Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~ 230 (421)
T COG0402 156 FPDPGAETDEELEETEELLREAHGLGRDVVGL-----APHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE 230 (421)
T ss_pred CCcccccchHHHHHHHHHHHHHhcCCCeeEEE-----ecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh
Confidence 1 11111 1235566666666333322 11334578999999999999999999999985433 2222221
Q ss_pred cccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccc
Q 010547 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~ 322 (507)
+.+ .+-.+...+.+ .-+.+..+.|+.+. +.+.+..+++.|+.+. +||.
T Consensus 231 ~~g------------------------~~~~~~~~~~g----~l~~~~~~~H~~~~--~~~e~~~l~~~g~~v~--~cP~ 278 (421)
T COG0402 231 PYG------------------------ARPVERLDLLG----LLGSHTLLAHCVHL--SEEELELLAESGASVV--HCPR 278 (421)
T ss_pred hcC------------------------CCHHHHHHHcC----CCCCCeEEEEeccC--CHHHHHHHhhCCCeEE--ECcc
Confidence 111 01111111110 01355677777663 3334444557776554 4773
Q ss_pred cccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH
Q 010547 323 YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (507)
. ++... ....++.+++..|+++++|||...++...+++. +......+
T Consensus 279 s------N~~L~-------------sG~~p~~~~~~~gv~v~~gTD~~~~~~~~d~l~--------------~~~~a~~l 325 (421)
T COG0402 279 S------NLKLG-------------SGIAPVRRLLERGVNVALGTDGAASNNVLDMLR--------------EMRTADLL 325 (421)
T ss_pred h------hcccc-------------CCCCCHHHHHHcCCCEEEecCCccccChHHHHH--------------HHHHHHHH
Confidence 1 11111 111235678889999999999987765332211 11111122
Q ss_pred HHHHhcCCCHH---HHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEE
Q 010547 403 SYGRKYGVTLE---QLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479 (507)
Q Consensus 403 ~~~~~~gls~~---~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 479 (507)
........+.. ++++++|.|+|++||+.++|+|++|+.||||++|.+.+...... + .+.+.-......|
T Consensus 326 ~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~~~G~le~G~~ADlvvld~~~~~~~~~~-------~-~~~~v~~~~~~~v 397 (421)
T COG0402 326 QKLAGGLLAAQLPGEALDMATLGGAKALGLDDIGSLEVGKKADLVVLDASAPHLAPLR-------P-VSRLVFAAGGKDV 397 (421)
T ss_pred HHhhcCCCcccchHHHHHHHHhhHHHHcCCcccCCcccccccCEEEEcCCCCcccccc-------H-HHHHHHhcCCCce
Confidence 22222121111 38999999999999987799999999999999999875332111 1 1112222222369
Q ss_pred EEEEECCEEEEecCccc
Q 010547 480 LATISRGNLVYKEGNHA 496 (507)
Q Consensus 480 ~~v~v~G~~v~~~g~~~ 496 (507)
..||++|+.++.+|++.
T Consensus 398 ~~v~~~g~~v~~~~~~~ 414 (421)
T COG0402 398 DRVLVDGRLVMEDGRLL 414 (421)
T ss_pred eEEEECCEEEEEcceeh
Confidence 99999999999998876
|
|
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=246.43 Aligned_cols=361 Identities=16% Similarity=0.145 Sum_probs=200.5
Q ss_pred EEEEecEEECCCCc-eeeeEEEe-CCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---------
Q 010547 45 YWLTSKRIVTPKGV-ISGAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------- 113 (507)
Q Consensus 45 ~~i~n~~i~~~~~~-~~~~I~I~-dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~--------- 113 (507)
+.++|+++ ++++ .+++|+|+ ||+|++||+....+ ++. +..|++|+|||||+|+|+.....+
T Consensus 4 ~~~~~~~~--~~~~~~~~~i~I~~~g~I~~vg~~~~~~---~~~---~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~ 75 (455)
T TIGR02022 4 YWAERALL--PDGWAEGVRIAVAADGRILAIETGVPAA---PGA---ERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSG 75 (455)
T ss_pred hhHHhccC--CCccccCceEEEecCCEEEEecCCCCcc---ccc---ccCCCEEccCCcccCcchhhHhhcCCcccccCC
Confidence 45667766 4443 47899999 99999999864321 122 245889999999999999652100
Q ss_pred -----CC-------------CCh----hHHHHHHHhCCceEEEeCCCCCCC------CCCCHHHHHHHHHHHhc-Cceee
Q 010547 114 -----EW-------------EGF----PSGTKAAAAGGITTLIDMPLNSDP------STISTETLKLKVDAAEK-RIYVD 164 (507)
Q Consensus 114 -----~~-------------~~~----~~~~~~~l~~GvTt~~~~~~~~~p------~~~~~~~~~~~~~~~~~-~~~~~ 164 (507)
.| +.+ ...+.+++++||||+.++. ...+ .....+......++... +....
T Consensus 76 ~~~l~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~ 154 (455)
T TIGR02022 76 GDSFWTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFH-YLHHAPDGTPYADPAEMAERIAAAAADAGIGLT 154 (455)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeee-eecccCCCccccchhhhHHHHHHHHHHhCCeEE
Confidence 01 001 1234567899999999863 1111 11112223344444432 22222
Q ss_pred EE--Eec--c---ccCCC---------cccHHHHHHHHH----cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 010547 165 VG--FWG--G---LVPEN---------AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224 (507)
Q Consensus 165 ~~--~~~--~---~~~~~---------~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 224 (507)
+. .+. . ..... ....+..+.+.+ .+. +...+.+ .....++++.++++.+ +++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p---~~~~~~s~e~l~~~~~-a~~~g 228 (455)
T TIGR02022 155 LLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPA--AVLGLAP---HSLRAVTPEQLAAVLQ-ASDRQ 228 (455)
T ss_pred eeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCc--eEEEEec---CCCCcCCHHHHHHHHH-HHhCC
Confidence 21 111 0 11100 001111222221 222 2222222 2334678999999999 88999
Q ss_pred CcEEEecCCcc-cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHH
Q 010547 225 RPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLD 303 (507)
Q Consensus 225 ~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~ 303 (507)
.++.+|+.+.. .+.......+ ..-++...+.+ ..+.++.+.|+..- +.+
T Consensus 229 ~~v~~H~~e~~~e~~~~~~~~G------------------------~~~v~~l~~~g----~l~~~~~~~H~~~l--~~~ 278 (455)
T TIGR02022 229 APVHIHVAEQQKEVDDCLAWSG------------------------RRPVEWLLDHG----PVDARWCLVHATHL--TDE 278 (455)
T ss_pred CceEEEECCChHHHHHHHHHhC------------------------CCHHHHHHHcC----CCCCCEEEEEeecC--CHH
Confidence 99999995322 1111000000 00112222211 11556777787763 234
Q ss_pred HHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC-ChhhhccccC
Q 010547 304 LLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT-VPELKLLDEG 382 (507)
Q Consensus 304 ~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~-~~~~~~~~~~ 382 (507)
.++.+++.|+.+. +||... . . ......++.+++++|+.+++|||.... ++...+
T Consensus 279 d~~~la~~g~~v~--~~P~sn------~-------~------lg~g~~pi~~l~~~Gv~v~lGTD~~~~~d~~~~m---- 333 (455)
T TIGR02022 279 ETALLARSGAVAG--LCPTTE------A-------N------LGDGIFPAVDFVAAGGRFGIGSDSHVVIDVAEEL---- 333 (455)
T ss_pred HHHHHHHcCCeEE--EChhhh------c-------c------ccCCCCCHHHHHHCCCeEEEECCCCCCCCHHHHH----
Confidence 6777777786654 466421 0 0 001123456788899999999996431 221110
Q ss_pred CccccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCce
Q 010547 383 NFLKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEF 452 (507)
Q Consensus 383 ~~~~~~~~~~~~~~~l~~~~~~~~----------~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~ 452 (507)
.......... ...++++++++++|.|||++||+ +.|+|++||+||||++|.+.+.
T Consensus 334 --------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~-~~GsLe~Gk~ADlvvld~~~~~ 398 (455)
T TIGR02022 334 --------------RQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGL-ATGGLRAGARADFLTLDGDHPY 398 (455)
T ss_pred --------------HHHHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCcCEEEEeCCCcc
Confidence 0111111111 12356789999999999999999 5899999999999999987544
Q ss_pred EeCCCCCcccCCCCCccccCcEE---eeEEEEEEECCEEEEecCcccCC
Q 010547 453 ELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAPA 498 (507)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~---~~~V~~v~v~G~~v~~~g~~~~~ 498 (507)
..+.. . .+++..+.. ...|..|||+|++||++|+++..
T Consensus 399 ~~~~~-------~-~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~ 439 (455)
T TIGR02022 399 LAGAL-------G-DSLLDRWLFAGGGAAVRDVWVGGRWVVRDGRHALR 439 (455)
T ss_pred cCCCC-------c-hhHHHHHhhcCCCCCccEEEECCEEEEECCccccH
Confidence 32211 0 122221222 24699999999999999999754
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-28 Score=240.17 Aligned_cols=313 Identities=19% Similarity=0.179 Sum_probs=188.1
Q ss_pred ceEEEEe-cEEECCCC---------ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 43 NQYWLTS-KRIVTPKG---------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 43 ~~~~i~n-~~i~~~~~---------~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
++++|+| +.|++.+. +.+++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+.....
T Consensus 1 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~---~~~~~iD~~g~~v~PGlId~H~Hl~~~~~ 77 (382)
T PRK14085 1 MSTLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAP---AADERVDAGGRAVLPGFVDSHSHLVFAGD 77 (382)
T ss_pred CcEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCC---CCCeEEeCCCCEEecCeEecCcCccccCC
Confidence 3578999 59999752 34789999999999999864333 26789999999999999999999964321
Q ss_pred CC-----------C-----------------CC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcC
Q 010547 113 TE-----------W-----------------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 160 (507)
Q Consensus 113 ~~-----------~-----------------~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 160 (507)
.. + +. ....+..++++||||+.+.. .. .....+.++. .+... +
T Consensus 78 r~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~-~~--~~~~~~~~~~-~~~~~-~ 152 (382)
T PRK14085 78 RSAEFAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKT-GY--GLTVEDEARS-ARIAA-E 152 (382)
T ss_pred hhHHHHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCC-cC--CCCHHHHHHH-HHHHH-H
Confidence 10 0 11 11234577899999999875 21 1111122221 11111 1
Q ss_pred ceeeEEEecc--ccC---CCc-ccHHH----HHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEe
Q 010547 161 IYVDVGFWGG--LVP---ENA-YNASA----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (507)
Q Consensus 161 ~~~~~~~~~~--~~~---~~~-~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 230 (507)
........++ ... ..+ ...+. +....+..+..++.+... ...++++++++++.|+++|.++.+|
T Consensus 153 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idi~~~~------~~~~~~~l~~~~~~a~~~g~~v~~H 226 (382)
T PRK14085 153 FTDEVTFLGAHVVPPEYAGDADEYVDLVCGPMLDAVAPHARWIDVFCER------GAFDEDQSRRVLTAGRAAGLGLRVH 226 (382)
T ss_pred hhhcceeeccccCCcccCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC------CCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 1111111110 000 011 11111 113333345555554321 2467899999999999999999999
Q ss_pred cCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHh
Q 010547 231 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 310 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~ 310 (507)
+..... ...+..+.++ |. ..+.|+.. -..+.++.+++
T Consensus 227 ~~~~~~-----------------------------~~~v~~~~~~-----------g~-~~i~H~~~--l~~~~~~~la~ 263 (382)
T PRK14085 227 GNQLGP-----------------------------GPGVRLAVEL-----------GA-ASVDHCTY--LTDADVDALAG 263 (382)
T ss_pred eCcccC-----------------------------ChHHHHHHHc-----------CC-CcHHHhCC--CCHHHHHHHHH
Confidence 853110 0012222221 11 12455554 23346677777
Q ss_pred CCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCC
Q 010547 311 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 390 (507)
Q Consensus 311 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~ 390 (507)
.|+.++ +||..... ......++.++++.|+++++|||+.+.....
T Consensus 264 ~gv~~~--~~P~~~~~-------------------~~~~~~~~~~l~~aGv~v~lgsD~~~~~~~~-------------- 308 (382)
T PRK14085 264 SGTVAT--LLPGAEFS-------------------TRQPYPDARRLLDAGVTVALASDCNPGSSYT-------------- 308 (382)
T ss_pred cCCEEE--ECcHHHHh-------------------cCCCCchHHHHHHCCCcEEEEeCCCCCCChH--------------
Confidence 786443 35542110 0011235678889999999999975432211
Q ss_pred CchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCce
Q 010547 391 ISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEF 452 (507)
Q Consensus 391 ~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~ 452 (507)
..+..... .....+++++++++++|.|||++||+++.|+|++||.|||+++|.+...
T Consensus 309 -----~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~~ 366 (382)
T PRK14085 309 -----SSMPFCVALAVRQMGMTPAEAVWAATAGGARALRRDDVGVLAVGARADLHVLDAPSHL 366 (382)
T ss_pred -----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCEEEEcCCCCc
Confidence 00222122 2345689999999999999999999965899999999999999987543
|
|
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=249.27 Aligned_cols=362 Identities=15% Similarity=0.117 Sum_probs=200.0
Q ss_pred eEEEEecEEECCCCc-eeeeEEEeC-CEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC---------
Q 010547 44 QYWLTSKRIVTPKGV-ISGAVEIKE-GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--------- 112 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~-~~~~I~I~d-G~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~--------- 112 (507)
+++++++.+ ++++ .+++|+|+| |||++||+....+ + ++..|++|+|||||+|+|+.....
T Consensus 4 ~~~~~~~~~--~~~~~~~~~v~i~~~grI~~vg~~~~~~----~---~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~ 74 (456)
T PRK09229 4 TLFAERALL--PDGWARNVRLTVDADGRIAAVEPGAAPA----G---AERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGP 74 (456)
T ss_pred hHHHHHhhC--CCccccCcEEEEecCCeEEEecCCCCCc----c---ccccCcEEccCcccccccHhhHhhcCcccccCC
Confidence 444555555 4443 578999999 9999999854311 2 345899999999999999863200
Q ss_pred -----CCCCC-------------h----hHHHHHHHhCCceEEEeCCCCCCC------CCCCHHHHHHHHHHHhc---Cc
Q 010547 113 -----TEWEG-------------F----PSGTKAAAAGGITTLIDMPLNSDP------STISTETLKLKVDAAEK---RI 161 (507)
Q Consensus 113 -----~~~~~-------------~----~~~~~~~l~~GvTt~~~~~~~~~p------~~~~~~~~~~~~~~~~~---~~ 161 (507)
..|-. + ...+.+++++||||+.++. ...+ .....+......++... +.
T Consensus 75 ~~~~l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~ 153 (456)
T PRK09229 75 PQDSFWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFH-YLHHDPDGTPYADPAEMALRIVAAARAAGIGL 153 (456)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeee-eeccCCCCCccCChHHHHHHHHHHHHHcCCEE
Confidence 01100 0 1234567899999999863 1111 11112333344444432 22
Q ss_pred eeeEEE--eccccCCCc--------c----cHHHHHHHHH--cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 010547 162 YVDVGF--WGGLVPENA--------Y----NASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR 225 (507)
Q Consensus 162 ~~~~~~--~~~~~~~~~--------~----~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 225 (507)
.+.... +.+....++ . ..+..+++.+ .+...+...+.+ .....++++.++++.+.| ++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~s~e~l~~~~~~A-~~g~ 229 (456)
T PRK09229 154 TLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAP---HSLRAVTPDQLAAVLALA-APDG 229 (456)
T ss_pred EeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeC---CCCCCCCHHHHHHHHHHh-cCCC
Confidence 121111 111100000 1 1112222222 111112222222 333467999999999999 9999
Q ss_pred cEEEecCCcc-cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHH
Q 010547 226 PLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDL 304 (507)
Q Consensus 226 ~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~ 304 (507)
++.+|+.+.. .+.......+ ..-.+...+. + ..+.++.+.|+..- +.+.
T Consensus 230 ~i~~H~~e~~~e~~~~~~~~g------------------------~~~~~~l~~~--g--~l~~~~~l~H~~~l--~~~d 279 (456)
T PRK09229 230 PVHIHIAEQTKEVDDCLAWSG------------------------ARPVEWLLDH--A--PVDARWCLVHATHL--TDAE 279 (456)
T ss_pred ceEEEeCCCHHHHHHHHHHcC------------------------CCHHHHHHHc--C--CCCCCeEEEeeccC--CHHH
Confidence 9999994322 1111111000 0001111111 1 11556778888763 3445
Q ss_pred HHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC-ChhhhccccCC
Q 010547 305 LMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT-VPELKLLDEGN 383 (507)
Q Consensus 305 i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~-~~~~~~~~~~~ 383 (507)
++.+++.|+.+. +||... .. ......++.++++.|+++++|||.... ++...+
T Consensus 280 ~~~la~~g~~v~--~~P~sn------~~-------------lg~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~----- 333 (456)
T PRK09229 280 TARLARSGAVAG--LCPTTE------AN-------------LGDGIFPAVDYLAAGGRFGIGSDSHVSIDLVEEL----- 333 (456)
T ss_pred HHHHHHcCCeEE--ECchhh------hh-------------hcCCCCCHHHHHHCCCeEEEecCCCCCCCHHHHH-----
Confidence 777777786654 466321 00 001122456788899999999996431 111110
Q ss_pred ccccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceE
Q 010547 384 FLKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 453 (507)
Q Consensus 384 ~~~~~~~~~~~~~~l~~~~~~~~----------~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~ 453 (507)
.+........ +..++++++++++|.|+|+++|+ ++|+|++||+||||++|.+.+..
T Consensus 334 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~-~~GsLe~Gk~ADlvvld~~~~~~ 399 (456)
T PRK09229 334 -------------RLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGR-AIGGLAVGARADLVVLDLDHPAL 399 (456)
T ss_pred -------------HHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCC-CcCCcCCCCccCEEEEeCCCccc
Confidence 0100011110 12467899999999999999999 68999999999999999876322
Q ss_pred eCCCCCcccCCCCCccccCcEE---eeEEEEEEECCEEEEecCcccC
Q 010547 454 LDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~---~~~V~~v~v~G~~v~~~g~~~~ 497 (507)
.+. .. .+++..+.. ...|..|||+|++||++|++++
T Consensus 400 ~~~-------~~-~~~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~d 438 (456)
T PRK09229 400 AGR-------EG-DALLDRWVFAGGDAAVRDVWVAGRWVVRDGRHRL 438 (456)
T ss_pred cCC-------Ch-hhHHHHHhhcCCCCCeeEEEECCEEEEECCccCC
Confidence 110 00 122221121 2469999999999999998764
|
|
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=234.34 Aligned_cols=343 Identities=22% Similarity=0.244 Sum_probs=204.6
Q ss_pred ceEEEEecEEECCCCce-eeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---CCCCh
Q 010547 43 NQYWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGF 118 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~-~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---~~~~~ 118 (507)
++++|+|++|++++++. +++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+..+... +.+.+
T Consensus 3 ~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~---~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~ 79 (380)
T TIGR00221 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELE---PEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETL 79 (380)
T ss_pred ceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCC---CCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHH
Confidence 46899999999988765 689999999999998764332 246899999999999999999998654222 23567
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh-cCceeeEEE--eccccCCCcccHHHHHHHHHcCCcEEEE
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGF--WGGLVPENAYNASALEALLNAGVLGLKS 195 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 195 (507)
....+.++++|||++++.. .+.|.....+.+....+... ......++. .+++.... ..|+...
T Consensus 80 ~~~~~~~~~~GvTt~l~t~-~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~-----------~~Gah~~-- 145 (380)
T TIGR00221 80 EIMSERLPKSGCTSFLPTL-ITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPE-----------KKGAHPP-- 145 (380)
T ss_pred HHHHHHHHhcCeeEEeeec-cCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChh-----------hcCCCCH--
Confidence 8888999999999999887 44444333444444444331 222233333 22222111 1222211
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEe-cCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHH
Q 010547 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH-AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 274 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 274 (507)
.....++.++++++.+.+... +++.+- +|... -.++++
T Consensus 146 -------~~i~~p~~~~~~~~~~~~~~~-i~~vTlAPE~~~---------------------------------~~~~i~ 184 (380)
T TIGR00221 146 -------EYIREPDVELFKKFLCEAGGV-ITKVTLAPEEDQ---------------------------------HFELIR 184 (380)
T ss_pred -------HHhhCcCHHHHHHHHHhcCCC-EEEEEECCCCCC---------------------------------hHHHHH
Confidence 111235667777777654322 222222 22111 134455
Q ss_pred HHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC------------CCcee-Ec
Q 010547 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG------------DTRFK-CA 341 (507)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~------------~~~~~-~~ 341 (507)
.+.+. |..+.+.|... +.+++..+.+.|..... |++.....+... ..... +.
T Consensus 185 ~l~~~-------gi~vs~GHs~A---~~~~~~~a~~~Ga~~~T-----HlfNaM~~~~hR~pg~vga~l~~~~~~~elI~ 249 (380)
T TIGR00221 185 HLKDA-------GIIVSAGHTNA---TYELAKAAFKAGATHAT-----HLYNAMSPIHHREPGVIGAVLDHDDVYTEIIA 249 (380)
T ss_pred HHHHC-------CeEEEeeCCCC---CHHHHHHHHHcCCCeee-----eeccCCCCcCCCCCcHHHHHhcCCCcEEEEEc
Confidence 55543 77777777553 35566666677765322 222222222111 00111 11
Q ss_pred CCCCC-hhhHHHHHHHHhcC-CeeEEeCCCCCCCh--hhh--------ccccCCccccCCCCchhhhHHHHHHHHHHh-c
Q 010547 342 PPIRD-AANKEKLWEALMDG-HIDMLSSDHSPTVP--ELK--------LLDEGNFLKAWGGISSLQFVLPVTWSYGRK-Y 408 (507)
Q Consensus 342 p~~~~-~~~~~~~~~~l~~G-~~~~lgtD~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 408 (507)
..++- .....-+.+.. | -.+.+-||...... ... .+..|......+.++|....|...++.+.+ .
T Consensus 250 Dg~Hv~p~~~~~~~r~k--g~~~~~lvtDa~~~~g~~~G~y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~ 327 (380)
T TIGR00221 250 DGIHIHPLNIRLAKKLK--GDSKLCLVTDSMAAAGAKDGVFIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFT 327 (380)
T ss_pred CCCcCCHHHHHHHHHhc--CCCcEEEEeccccccCCCCceEeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhh
Confidence 11111 11111222222 4 35778899654221 110 111222233344577777667766666655 4
Q ss_pred CCCHHHHHHHHhhchhHHhCCC-CCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCE
Q 010547 409 GVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 487 (507)
Q Consensus 409 gls~~~al~~~T~n~A~~lgl~-~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~ 487 (507)
+++++++++++|.|||+++|++ ++|+|++|+.|||+++|.+. .|..||++|+
T Consensus 328 ~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvv~d~~~---------------------------~v~~t~~~G~ 380 (380)
T TIGR00221 328 NISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPDF---------------------------EVILTIVNGN 380 (380)
T ss_pred CCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCcCCEEEECCCC---------------------------CEEEEEeCCC
Confidence 7999999999999999999994 47999999999999999652 6899999995
|
|
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=242.97 Aligned_cols=322 Identities=20% Similarity=0.191 Sum_probs=184.9
Q ss_pred eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC--------------C---------
Q 010547 59 ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------------W--------- 115 (507)
Q Consensus 59 ~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~--------------~--------- 115 (507)
.+++|+|+||+|++||+....+. +.+.++||++|++|+|||||+|+|+....... |
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPG-EEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGILS 80 (377)
T ss_pred CceEEEEECCEEEEEechhhCCc-ccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChHH
Confidence 57899999999999998543331 12568999999999999999999997431110 0
Q ss_pred ----------CChh----HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe---c-cccCC--C
Q 010547 116 ----------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW---G-GLVPE--N 175 (507)
Q Consensus 116 ----------~~~~----~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~--~ 175 (507)
+++. ..+..++++|||++.... ...-.......+.+..+.+..+..+.+... . .+... .
T Consensus 81 ~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~-~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 159 (377)
T TIGR01224 81 TVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKS-GYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQG 159 (377)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecc-cCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccC
Confidence 0001 123567899999984321 110000111122233333322222222211 0 11110 1
Q ss_pred c--ccH----H-HHHHHHHcC-CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCc
Q 010547 176 A--YNA----S-ALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 247 (507)
Q Consensus 176 ~--~~~----~-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~ 247 (507)
. ... + .+++..+.+ +.+++.+.. ....+.+.+.++++.|+++|.++.+|+.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~----------- 222 (377)
T TIGR01224 160 RPDDYVDGICEELIPQVAEEGLASFADVFCE------AGVFSVEQSRRILQAAQEAGLPVKLHAEELSN----------- 222 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCeeEEEec------CCCcCHHHHHHHHHHHHHCCCCEEEEecCCCC-----------
Confidence 0 011 1 223333333 445443221 12456789999999999999999999953211
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccc
Q 010547 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 327 (507)
Q Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~ 327 (507)
+. .+..... . |. ..+.|+... +.+.++.+++.|+.+. +||......
T Consensus 223 -------------~~-----~~~~~~~----~-------g~-~~~~H~~~~--~~~~l~~la~~g~~~~--~~P~~~~~l 268 (377)
T TIGR01224 223 -------------LG-----GAELAAK----L-------GA-VSADHLEHA--SDAGIKALAEAGTVAV--LLPGTTFYL 268 (377)
T ss_pred -------------CC-----HHHHHHH----c-------CC-CccHHHhcC--CHHHHHHHHhcCCEEE--ECchHHHhc
Confidence 00 1111111 1 10 123355442 3346777778887554 466432111
Q ss_pred ccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCC-CChhhhccccCCccccCCCCchhhhHHHHHHH-HH
Q 010547 328 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YG 405 (507)
Q Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 405 (507)
+ ....++.++++.|+++++|||+.+ ++.... +...+. ..
T Consensus 269 -------~------------~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~--------------------~~~~~~~~~ 309 (377)
T TIGR01224 269 -------R------------ETYPPARQLIDYGVPVALATDLNPGSSPTLS--------------------MQLIMSLAC 309 (377)
T ss_pred -------C------------CcCccHHHHHHCCCCEEEECCCCCCCChhHH--------------------HHHHHHHHH
Confidence 0 011235677889999999999754 322111 211222 23
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEE
Q 010547 406 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484 (507)
Q Consensus 406 ~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v 484 (507)
...+++++++++++|.|||+++|+ +.+|+|++||.||||++|.+++..+. ..... .+|..||+
T Consensus 310 ~~~~ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~----~~~~~------------~~v~~v~v 373 (377)
T TIGR01224 310 RLMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIP----YHYGV------------NHVHAVIK 373 (377)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHhh----hhcCC------------CCceEEEE
Confidence 456899999999999999999999 55899999999999999988643321 01111 26999999
Q ss_pred CCEE
Q 010547 485 RGNL 488 (507)
Q Consensus 485 ~G~~ 488 (507)
+|++
T Consensus 374 ~G~~ 377 (377)
T TIGR01224 374 NGNI 377 (377)
T ss_pred CCCC
Confidence 9984
|
This enzyme catalyzes the third step in histidine degradation. |
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-27 Score=238.25 Aligned_cols=329 Identities=19% Similarity=0.140 Sum_probs=208.7
Q ss_pred CCcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG 117 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~ 117 (507)
..+.+++|+|++|+++.. +..++|+|+||+|++|++..... .+.++||++|++|+|||||+|+|+..... +.
T Consensus 27 ~~~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~---~~~~vIDa~G~~v~PGlIDaHvHiess~~-~p-- 100 (588)
T PRK10027 27 DAVADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADA---PALQRIDARGATAVPGFIDAHLHIESSMM-TP-- 100 (588)
T ss_pred CCCCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCC---CCCeEEECCCCEEEECeEeccccCCcccC-CH--
Confidence 345678999999998632 56789999999999997653221 24689999999999999999999987543 22
Q ss_pred hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec----cccC----C-CcccHHHHHHHHH-
Q 010547 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG----GLVP----E-NAYNASALEALLN- 187 (507)
Q Consensus 118 ~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~-~~~~~~~~~~~~~- 187 (507)
....+.++.+||||+++.| ++.+.....+.+....+.+.... .++++.. +... . ..-..++++++.+
T Consensus 101 -~~~a~aal~~G~TtVv~dP-hei~nv~g~~gi~~~l~~a~~~p-~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~ 177 (588)
T PRK10027 101 -VTFETATLPRGLTTVICDP-HEIVNVMGEAGFAWFARCAEQAR-QNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDH 177 (588)
T ss_pred -hHHHHHHHhCceEEEEcCC-CCcccCCCHHHHHHHHHHhhhCC-CeeEEeecccCcCCcccccCCCcCCHHHHHHHhcC
Confidence 2335568999999999998 77788788888877776655332 2222111 1111 1 1124567777765
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHH
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (507)
..+.++...|.+.+ .-..+++.+.++. .+ .++++..|+..... .
T Consensus 178 ~~v~glgEvMn~~~---V~~~d~~~~~ki~-~~--~~~~idGH~p~l~g------------------------------~ 221 (588)
T PRK10027 178 PQVTGLAEMMDYPG---VISGQNALLDKLD-AF--RHLTLDGHCPGLGG------------------------------K 221 (588)
T ss_pred CCceeEEeccCccc---cccCCHHHHHHHH-Hh--CCCceECCCCCCCh------------------------------H
Confidence 56778888776643 2234555566665 34 89999999853321 1
Q ss_pred HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh
Q 010547 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347 (507)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (507)
.+...+.. |. ...|-.. +.+...+-.+.|..+..-- ++ ..
T Consensus 222 ~L~ay~aa-----------Gi--~sDHE~~---t~eea~eklr~Gm~v~iRe---------------gS---------~~ 261 (588)
T PRK10027 222 ELNAYIAA-----------GI--ENCHESY---QLEEGRRKLQLGMSLMIRE---------------GS---------AA 261 (588)
T ss_pred HHHHHHHc-----------CC--CCCcccC---CHHHHHHHHHCCCEEEEeC---------------Cc---------cc
Confidence 12222111 21 2233322 2223333335555443210 00 01
Q ss_pred hhHHHHHHHHhcC--CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhhchh
Q 010547 348 ANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPA 424 (507)
Q Consensus 348 ~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gls~~~al~~~T~n~A 424 (507)
.+.+.+...+.+- -..+++||........+ .| .+....+.+.+ .|+++++|++++|.|||
T Consensus 262 ~nl~~l~~~~~~~~~~~~~l~TDd~~~~~l~~---~G--------------hi~~~vr~av~~~Gi~~~~Ai~mAT~nPA 324 (588)
T PRK10027 262 RNLNALAPLINEFNSPQCMLCTDDRNPWEIAH---EG--------------HIDALIRRLIEQHNVPLHVAYRVASWSTA 324 (588)
T ss_pred cCHHHHHHHhhccCCCeEEEEcCCCChHHHHh---cc--------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1122233333221 35689999764322211 11 13444555555 79999999999999999
Q ss_pred HHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCccc
Q 010547 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496 (507)
Q Consensus 425 ~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~ 496 (507)
+++|+++.|+|++|+.|||+++|... .. .+..||++|++|+++ +..
T Consensus 325 ~~lgl~d~G~IapG~~ADlvvld~l~-------------~~------------~v~~v~~~G~~v~~~-~~~ 370 (588)
T PRK10027 325 RHFGLNHLGLLAPGKQADIVLLSDAR-------------KV------------TVQQVLVKGEPIDAQ-TLQ 370 (588)
T ss_pred HHcCCCCCcccCCCCcCCEEEEccCC-------------Cc------------eEEEEEECCEEeecc-ccc
Confidence 99999668999999999999999421 01 588999999999987 654
|
|
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=243.95 Aligned_cols=343 Identities=15% Similarity=0.119 Sum_probs=194.8
Q ss_pred ECCCCce-eeeE-EEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC--------CCC-----
Q 010547 53 VTPKGVI-SGAV-EIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------WEG----- 117 (507)
Q Consensus 53 ~~~~~~~-~~~I-~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~--------~~~----- 117 (507)
++++++. +++| +|+||+|++||+... .++||++|++|+|||||+|+|+....... ...
T Consensus 2 ~~~~~~~~~~~i~~v~~g~I~~Vg~~~~-------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~ 74 (418)
T cd01313 2 LLPEGWERNVRIEVDADGRIAAVNPDTA-------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWR 74 (418)
T ss_pred cCCCceecCeEEEEeCCCeEEEecCCCC-------CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHH
Confidence 4566654 6899 999999999998532 35699999999999999999997531110 000
Q ss_pred ------------------hhHHHHHHHhCCceEEEeCCCCCCCCC------CCHHHHHHHHHHHhc---CceeeEEE--e
Q 010547 118 ------------------FPSGTKAAAAGGITTLIDMPLNSDPST------ISTETLKLKVDAAEK---RIYVDVGF--W 168 (507)
Q Consensus 118 ------------------~~~~~~~~l~~GvTt~~~~~~~~~p~~------~~~~~~~~~~~~~~~---~~~~~~~~--~ 168 (507)
....+.+++++||||+.++. ...+.. ..........+++.. +..+.... .
T Consensus 75 ~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~ 153 (418)
T cd01313 75 ELMYRFAARLTPEQIEAIARQLYIEMLLAGITAVGEFH-YVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYAR 153 (418)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEee-eeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEec
Confidence 11234467899999999863 111110 011222333333332 22221111 1
Q ss_pred ccccCCCc------------ccHHHHHHHH----HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 010547 169 GGLVPENA------------YNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (507)
Q Consensus 169 ~~~~~~~~------------~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 232 (507)
.++....+ +..+.+.+++ +.+. +...+.+ .....++++.++++.+.|++ |.++.+|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p---~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~ 227 (418)
T cd01313 154 AGFGGPAPNPGQRRFINGYEDFLGLLEKALRAVKEHAA--ARIGVAP---HSLRAVPAEQLAALAALASE-KAPVHIHLA 227 (418)
T ss_pred cCCCCCCCchhhhhhcccHHHHHHHHHHHhhhhccCCc--eEEEEcc---CCCCCCCHHHHHHHHHHHhc-CCceEEEeC
Confidence 11111110 0111122211 2222 2222222 22235789999999999999 999999984
Q ss_pred Ccc-cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhC
Q 010547 233 MEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTN 311 (507)
Q Consensus 233 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~ 311 (507)
+.. .+.......+ ..-++...+. + ..+.++.+.|+..- +.+.++.+++.
T Consensus 228 e~~~e~~~~~~~~g------------------------~~~i~~l~~~--g--~l~~~~~~~H~~~l--~~~~~~~la~~ 277 (418)
T cd01313 228 EQPKEVDDCLAAHG------------------------RRPVELLLDH--G--HLDARWCLVHATHL--TDNETLLLGRS 277 (418)
T ss_pred CCHHHHHHHHHHcC------------------------CCHHHHHHHc--C--CCCCCEEEEeCCCC--CHHHHHHHHHc
Confidence 321 1110000000 0011111111 1 12667888888873 34567778888
Q ss_pred CCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC-ChhhhccccCCccccCCC
Q 010547 312 GDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT-VPELKLLDEGNFLKAWGG 390 (507)
Q Consensus 312 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~-~~~~~~~~~~~~~~~~~~ 390 (507)
|+.+.. ||...... + ....++.++++.|+++++|||.... ++...+
T Consensus 278 g~~v~~--~P~sn~~l-------g------------~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~------------ 324 (418)
T cd01313 278 GAVVGL--CPTTEANL-------G------------DGIFPAAALLAAGGRIGIGSDSNARIDLLEEL------------ 324 (418)
T ss_pred CCEEEE--CCCchhhc-------c------------CCCCCHHHHHHCCCcEEEecCCCCCcCHHHHH------------
Confidence 876544 66421110 0 1122456788899999999996432 111110
Q ss_pred CchhhhHHHH-HHHHHH--------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcc
Q 010547 391 ISSLQFVLPV-TWSYGR--------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH 461 (507)
Q Consensus 391 ~~~~~~~l~~-~~~~~~--------~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~ 461 (507)
.... +.+... ...++++++++++|.|+|++||++ .|+|++||.||||++|.+.++..+..
T Consensus 325 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~-~Gsle~Gk~ADlvvld~~~~~~~p~~---- 393 (418)
T cd01313 325 ------RQLEYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA-TGALEAGARADLLSLDLDHPSLAGAL---- 393 (418)
T ss_pred ------HHHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC-CCeECCCCccCEEEEcCCCccccCCC----
Confidence 0111 111111 236899999999999999999997 89999999999999998876544321
Q ss_pred cCCCCCccccCcEEe---eEEEEEEECCE
Q 010547 462 MKHPSISAYLGRRLS---GKVLATISRGN 487 (507)
Q Consensus 462 ~~~~~~~~~~~~~~~---~~V~~v~v~G~ 487 (507)
. ++|+..+... +.|+.|||+|+
T Consensus 394 ---~-~~~~~~lv~~~~~~~V~~v~V~G~ 418 (418)
T cd01313 394 ---P-DTLLDAWVFAAGDREVRDVVVGGR 418 (418)
T ss_pred ---c-hhHHHHHeecCCCCceeEEEeCCC
Confidence 0 2334434432 46999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=230.15 Aligned_cols=344 Identities=18% Similarity=0.176 Sum_probs=197.8
Q ss_pred EEEEecEEECCCCce-eeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC-------CCCC
Q 010547 45 YWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-------TEWE 116 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~-~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~-------~~~~ 116 (507)
++|+|++|++++++. +++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+..+.. ...+
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~---~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~ 78 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELP---PGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVE 78 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCC---CCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHH
Confidence 679999999998865 569999999999998764332 25589999999999999999999865432 1234
Q ss_pred ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe--ccccCCCcccHHHHHHHHHcCCcEEE
Q 010547 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW--GGLVPENAYNASALEALLNAGVLGLK 194 (507)
Q Consensus 117 ~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~ 194 (507)
.++...+.++++|||++++.. .+.+.....+.+....+.........++.| +++.... +.|+....
T Consensus 79 ~l~~~~~~~~~~GvTt~lpT~-it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~-----------~~Gah~~~ 146 (382)
T PRK11170 79 TLEIMQKANEKSGCTSFLPTL-ITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLV-----------KKGTHNPE 146 (382)
T ss_pred HHHHHHHHHHhcCEeEEeeec-cCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcc-----------cCCCCCHH
Confidence 566667778999999999876 333333323334443333332233333333 3332221 12221111
Q ss_pred EcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHH
Q 010547 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 274 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 274 (507)
....++.++++.+.+.+ . .+++.+-+ |+.. . .++++
T Consensus 147 ---------~~~~p~~~~~~~~~~~~-~-~i~~iTlA-----------------------------PE~~---~-~~~i~ 182 (382)
T PRK11170 147 ---------FIRKPDAEMVDFLCENA-D-VITKVTLA-----------------------------PEMV---D-AEVIR 182 (382)
T ss_pred ---------HhcCcCHHHHHHHHhcc-C-CEEEEEEC-----------------------------CCCC---c-HHHHH
Confidence 11124455555555432 1 22222222 1100 1 24444
Q ss_pred HHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCC------------Ccee-Ec
Q 010547 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD------------TRFK-CA 341 (507)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~------------~~~~-~~ 341 (507)
.+.+. |..+.+.|... +.+.+..+.+.|..... |++.....+.... .... ++
T Consensus 183 ~l~~~-------gi~vs~GHs~A---~~~~~~~a~~~Ga~~~T-----HlfNaM~~~~hR~pg~vga~l~~~~~~~elI~ 247 (382)
T PRK11170 183 KLVEA-------GIVVSAGHSNA---TYEEAKAGFRAGITFAT-----HLYNAMPYITGREPGLVGAILDEPDVYCGIIA 247 (382)
T ss_pred HHHHC-------CcEEEeeCCcC---CHHHHHHHHHcCCCEEe-----eccccCCcccCCCcchhhHhhcCCCcEEEEEc
Confidence 44443 66666666532 35555666666665322 2222222221110 0111 11
Q ss_pred CCCC-ChhhHHHHHHHHhcCCeeEEeCCCCCCChhh--h--------ccccCCccccCCCCchhhhHHHHHHHHHH-hcC
Q 010547 342 PPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPEL--K--------LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYG 409 (507)
Q Consensus 342 p~~~-~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~g 409 (507)
..++ .+....-+++.. |-.+.+-||..+..... + .+..|......+.++|....|...++.+. ..+
T Consensus 248 Dg~Hv~p~~~~~~~~~k--~~~~~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~ 325 (382)
T PRK11170 248 DGLHVDYANIRNAKRLK--GDKLCLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVG 325 (382)
T ss_pred CcccCCHHHHHHHHHhc--CCcEEEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcC
Confidence 1111 111122223333 45677889965422110 0 01122222233456666666666666554 479
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEE
Q 010547 410 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 488 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~ 488 (507)
++++++++++|.|||+++|+ +++|+|++|+.|||+++|.+. .|..||++|+.
T Consensus 326 ~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvvld~~~---------------------------~v~~v~~~G~~ 378 (382)
T PRK11170 326 IALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFTRDF---------------------------KITKTIVNGNE 378 (382)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEECCCC---------------------------cEEEEEECCEE
Confidence 99999999999999999999 457999999999999999541 68999999999
Q ss_pred EEe
Q 010547 489 VYK 491 (507)
Q Consensus 489 v~~ 491 (507)
++.
T Consensus 379 ~~~ 381 (382)
T PRK11170 379 VVT 381 (382)
T ss_pred eec
Confidence 975
|
|
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=234.73 Aligned_cols=392 Identities=20% Similarity=0.251 Sum_probs=217.4
Q ss_pred EEEEecEEECCCC-c--eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC-----C
Q 010547 45 YWLTSKRIVTPKG-V--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW-----E 116 (507)
Q Consensus 45 ~~i~n~~i~~~~~-~--~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~-----~ 116 (507)
++|+|++|+++.. . ..++|+|+||+|++|++..+ . +.++||++|++|+|||||+|+|+..+..... +
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~-~----~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE 76 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT-K----PAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPE 76 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC-C----CCeEEECCCCEEEeCEEeeeECCCccccccccccCHH
Confidence 5799999999865 3 24799999999999986533 1 4589999999999999999999986411100 0
Q ss_pred ----------------------ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc--
Q 010547 117 ----------------------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-- 172 (507)
Q Consensus 117 ----------------------~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 172 (507)
+......++++.|+||++++. .|.... .....++.....++...+.-+.
T Consensus 77 ~~~~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa---~~p~~a----rh~h~e~~~~p~~d~~~~~~~gnn 149 (556)
T TIGR03121 77 DHRRDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAA---VPPLNA----RHTHEEFADTPILDKGGYTLLGNN 149 (556)
T ss_pred HHhhcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCC---CCccch----hhhHHHhccCccccccceEEecch
Confidence 112233577899999999875 133222 2223333333333332221111
Q ss_pred -------CCC-cccH-HHHHHHHH-cCCcEEEEcccCCC----------------CCCCCCCCHHHHHHHHHHHHhcCCc
Q 010547 173 -------PEN-AYNA-SALEALLN-AGVLGLKSFMCPSG----------------INDFPMTNASHIKEGLSVLARYKRP 226 (507)
Q Consensus 173 -------~~~-~~~~-~~~~~~~~-~g~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~a~~~~~~ 226 (507)
... .+.. +-+..+++ ....++|..- +.| .+.....+.+.++.+.+...++|+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~vaw~l~~tk~~giK~vn-pgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l~lp 228 (556)
T TIGR03121 150 WFLLEYLKDGEPEKAAAYVAWLLKATKGYGIKVVN-PGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARANEELGLP 228 (556)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccceEEEEEC-CCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 111 1111 22222222 4566777631 111 0112224456677777888888887
Q ss_pred EEEe--cCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce------EEEEecC--
Q 010547 227 LLVH--AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH------LHIVHLS-- 296 (507)
Q Consensus 227 v~~H--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~------~~~~h~~-- 296 (507)
-.+| |.+.. .|...+ ..-+.+++.+ |.+ +|+.|+.
T Consensus 229 h~~h~H~nnlg------------------------~pgn~~--~t~~t~~~~~---------g~~~~~~~~~h~tH~qf~ 273 (556)
T TIGR03121 229 HSIHVHCNNLG------------------------VPGNYE--TTLDTLDAAE---------GVKPNRNQVLHLTHVQFH 273 (556)
T ss_pred ceEEEecCCCC------------------------CCCchH--HHHHHHHHhc---------CCCCCccceeEeeeeeee
Confidence 5555 43322 233222 2234555555 554 8888884
Q ss_pred -----C---hhHHHHHHHHHHhCCCCEEEeccc----ccccccccC-------------CCC----CCCceeEcCCC-CC
Q 010547 297 -----D---ASSSLDLLMEAKTNGDSITVETCP----HYLAFSAEE-------------IPD----GDTRFKCAPPI-RD 346 (507)
Q Consensus 297 -----~---~~~~~~~i~~~~~~g~~i~~~~~~----~~~~~~~~~-------------~~~----~~~~~~~~p~~-~~ 346 (507)
. -...-+.+.+.....-++++++.- +....+.+. ..+ ..+..-+.|-. +.
T Consensus 274 syg~~~~~~f~s~a~~~a~~vn~~~~~t~d~Gqv~fg~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~gvvp~~y~~ 353 (556)
T TIGR03121 274 SYGGTSWRDFESGAEKIADYVNANPNVTIDVGQVTFGETTTMTADGPMEYDLHKLTGLKWANKDVELETGSGVVPFKYSP 353 (556)
T ss_pred ccCCCCCCCcchhHHHHHHHHhcCCCEEEEeCceecCCceEEeccchhhhhcccCCCCceeeeeeecccCCceEEeeecC
Confidence 1 012233455555555555544321 000011110 000 00010111111 22
Q ss_pred hhhHHHHH-----H--HHh-cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHH---HHH---HHHH-------
Q 010547 347 AANKEKLW-----E--ALM-DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL---PVT---WSYG------- 405 (507)
Q Consensus 347 ~~~~~~~~-----~--~l~-~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~---~~~~------- 405 (507)
.....++. + ++. +--++.+.||+.- .|+|.+.+.-+.-+-..- ..+ ...+
T Consensus 354 ~~~v~~~qwaiglel~Ll~~dp~~~~~ttDhPn---------ggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~ 424 (556)
T TIGR03121 354 KNPVHALQWAIGLELFLLIKDPWRVFLTTDHPN---------GGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLG 424 (556)
T ss_pred CCcchHHHHHHhhHHHHhcCCcceeEEeccCCC---------CCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccc
Confidence 22222221 1 122 2346899999873 356666554333211100 000 1111
Q ss_pred -HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEE
Q 010547 406 -RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 484 (507)
Q Consensus 406 -~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v 484 (507)
.+..+|++|+++++|.|||++||++++|+|++|+.|||+|+|.++...- .. ...+. ...+.+..||+
T Consensus 425 ~~~Re~sL~EI~~mtTanPAkaLGL~dkG~L~pGa~ADIaI~D~~~~~~~-~~---------~~~v~--~~~~~v~~Tik 492 (556)
T TIGR03121 425 GIDREYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYDINPDDVD-TD---------YADVE--KAFSTALYVFK 492 (556)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEeCcccccC-Cc---------hHHHh--hccCCccEEEE
Confidence 2345999999999999999999996679999999999999997653321 00 11111 11246899999
Q ss_pred CCEEEEecCcccCCCCCcccc
Q 010547 485 RGNLVYKEGNHAPAACGSPIL 505 (507)
Q Consensus 485 ~G~~v~~~g~~~~~~~~~~~~ 505 (507)
+|++|+++|+++....|+.+.
T Consensus 493 ~G~vV~~dGei~~~~~G~~~~ 513 (556)
T TIGR03121 493 DGEIVVKDGEIVETPWGRTYW 513 (556)
T ss_pred CCEEEEECCEEccCCCCcEEE
Confidence 999999999999988998875
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=226.15 Aligned_cols=327 Identities=18% Similarity=0.214 Sum_probs=237.0
Q ss_pred EEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcC--ceeeEEEecccc
Q 010547 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLV 172 (507)
Q Consensus 95 ~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (507)
+-+|=-||+|+|+-++ .. .+++. ...+.++|++++++ ++.|.....+.+......+... ..+++..++++.
T Consensus 5 ~~~~~~~d~h~hl~~~-~~-~~~~~----~~~~~~~t~~v~mP-nt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~ 77 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG-AM-LKAVV----PYTARQFGRAIVMP-NLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLY 77 (345)
T ss_pred EEecCcceEEEecCCc-hH-HHHHH----HHHHHhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEE
Confidence 4568889999999864 21 11222 23346799999999 7778877788887777766654 335677666665
Q ss_pred CCCcccHHHHHHHHHcCC-cEEEEcccCCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc
Q 010547 173 PENAYNASALEALLNAGV-LGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (507)
.......++++++.+.|+ .++|.|+...+.. +....+++.+.++++.++++|.++.+|+++..... ..
T Consensus 78 ~~~~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~----------~~ 147 (345)
T PRK05451 78 LTDNTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDI----------DI 147 (345)
T ss_pred eCCCCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCccc----------cc
Confidence 554445688888888895 4999987532111 11123778999999999999999999998743200 00
Q ss_pred cccccccCCCChhHHHHHHHHH-HHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 251 RSYSTYLKTRPPSWEEAAIREL-LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~-~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
...+...+.+. ..++.+ .++.++|+.|+++. .+++.++++ +.++++++||||+.++.+
T Consensus 148 -----------~~~e~~~~~~~l~~lA~~------~pg~~lhI~Hlst~-~~~e~i~~a---~~~it~Et~ph~L~l~~~ 206 (345)
T PRK05451 148 -----------FDREAVFIDRVLEPLRRR------FPKLKIVFEHITTK-DAVDYVREA---NDNLAATITPHHLLINRN 206 (345)
T ss_pred -----------ccchHHHHHHHHHHHHHh------cCCCcEEEEecCcH-HHHHHHHhc---CCCEEEEecHHHHhcCHH
Confidence 00123334443 335544 34888999999998 888888765 568999999999999998
Q ss_pred CCC--CCCCceeEcCCCCChhhHHHHHHHHhcCCee-EEeCCCCCCChhhhccccCCccccCCCCchhhh---HHHHHHH
Q 010547 330 EIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWS 403 (507)
Q Consensus 330 ~~~--~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~-~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~ 403 (507)
.+. ..++.++++||+|...+++.+++++.+|.++ +++|||+|+...+|.. +.|..+++. .++.++.
T Consensus 207 ~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~--------~~G~~gi~~~~~g~~~~~~ 278 (345)
T PRK05451 207 DMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKES--------ACGCAGIFSAPAALELYAE 278 (345)
T ss_pred HHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCC--------CCCCCchhhHHHHHHHHHH
Confidence 865 4567799999999999999999999999999 7999999998776631 223334443 3454454
Q ss_pred HHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccc-cCcEEeeEEE
Q 010547 404 YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 480 (507)
Q Consensus 404 ~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~ 480 (507)
...+.+ ++++++++.+.|||++||+ +++|+|.+| +..|.++.. ...++.. ++|| .+-.+.++|.
T Consensus 279 ~~~~~~-~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~-~~~s~~~-~sp~~~~~~~~~~~~ 344 (345)
T PRK05451 279 VFEEAG-ALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPES-IPFGDET-VVPFRAGETLRWSVK 344 (345)
T ss_pred HHHcCC-CHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcc-cccCCCc-eeeecCCceeeeEec
Confidence 444444 9999999999999999999 889999888 466777766 6677777 8888 4666666654
|
|
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=235.86 Aligned_cols=318 Identities=18% Similarity=0.163 Sum_probs=185.0
Q ss_pred EEEeCCEEEEeecCCCCCC-CCCCCcEEecCCCEEecceeecccccCCCCCC-----------C----------------
Q 010547 63 VEIKEGNIISIVSEEDWPR-NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----------E---------------- 114 (507)
Q Consensus 63 I~I~dG~I~~Vg~~~~~~~-~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~-----------~---------------- 114 (507)
|+|+||||++|++....+. .+.+.++||++|++|+|||||+|+|+...... .
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 5799999999998654321 11256899999999999999999999653211 0
Q ss_pred ------CCC----hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc--CceeeEEEecc-ccCCCc----c
Q 010547 115 ------WEG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGG-LVPENA----Y 177 (507)
Q Consensus 115 ------~~~----~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~----~ 177 (507)
.++ ....+..++++|||++.++. ...-.........+..+.+.. +..+......+ ..+... .
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~ 159 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKS-GYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREE 159 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecc-cCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHH
Confidence 001 11234567899999998742 100000111112222222222 22222222211 111101 1
Q ss_pred c-----HHHHHHHH-HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcc
Q 010547 178 N-----ASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (507)
Q Consensus 178 ~-----~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (507)
. .+.++... ..+..+++.+... ...+.+.++++++.|+++|.++.+|+.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~--------------- 218 (371)
T cd01296 160 YIDLVIEEVLPAVAEENLADFCDVFCEK------GAFSLEQSRRILEAAKEAGLPVKIHADELSN--------------- 218 (371)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeecC------CccCHHHHHHHHHHHHHCCCeEEEEEcCcCC---------------
Confidence 1 11222222 2456666654211 2356889999999999999999999954321
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCC
Q 010547 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331 (507)
Q Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~ 331 (507)
+. .+..... . +. ..+.|+... ..+.++.+++.|+.+.. ||......
T Consensus 219 ---------~~-----~~~~~~~----~-------g~-~~i~H~~~~--~~~~i~~la~~g~~v~~--~P~~~~~l---- 264 (371)
T cd01296 219 ---------IG-----GAELAAE----L-------GA-LSADHLEHT--SDEGIAALAEAGTVAVL--LPGTAFSL---- 264 (371)
T ss_pred ---------CC-----HHHHHHH----c-------CC-CeeHHhcCC--CHHHHHHHHHcCCeEEE--ChHHHHHh----
Confidence 00 1111111 1 11 234565542 24577777788876544 55321110
Q ss_pred CCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCC
Q 010547 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGV 410 (507)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gl 410 (507)
+.. ..++.+++++|+++++|||+.+..... ..+...+.. ....++
T Consensus 265 ---~~~------------~~~~~~l~~~Gv~v~lgsD~~p~~~~~-------------------~~l~~~~~~~~~~~~l 310 (371)
T cd01296 265 ---RET------------YPPARKLIDAGVPVALGTDFNPGSSPT-------------------SSMPLVMHLACRLMRM 310 (371)
T ss_pred ---CCC------------CCCHHHHHHCCCcEEEecCCCCCCChH-------------------HHHHHHHHHHHHhcCC
Confidence 000 123467788999999999975432110 002222222 345689
Q ss_pred CHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECC
Q 010547 411 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 486 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G 486 (507)
+++++++++|.|||+++|+ +++|+|++||.||||++|.++...+.. .... ..|..||++|
T Consensus 311 ~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~~~----~~~~------------~~v~~v~~~G 371 (371)
T cd01296 311 TPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSYEHLAY----RFGV------------NLVEYVIKNG 371 (371)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEECCCchHhhhh----hcCC------------CCceEEEeCc
Confidence 9999999999999999999 578999999999999999886543311 1111 2589999998
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=233.90 Aligned_cols=346 Identities=18% Similarity=0.172 Sum_probs=186.9
Q ss_pred CEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC---------C-------------CC----hhHH
Q 010547 68 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---------W-------------EG----FPSG 121 (507)
Q Consensus 68 G~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~---------~-------------~~----~~~~ 121 (507)
|+|++||+..+.+..+++.+++|+.|++|+|||||+|+|+....... | +. ....
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 79999998654433333678999999999999999999996542211 1 00 1223
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC-cccH-HHHHHHHH---cCCcEEEEc
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNA-SALEALLN---AGVLGLKSF 196 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~---~g~~~~~~~ 196 (507)
+.+++++||||+.++. . . .+ ..+.......+..+...... ..... .... +.++...+ .....+...
T Consensus 81 ~~E~l~~G~Tt~~d~~-~-~-----~~-~~~a~~~~GiR~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 151 (381)
T cd01312 81 IRQMLESGTTSIGAIS-S-D-----GS-LLPALASSGLRGVFFNEVIG-SNPSAIDFKGETFLERFKRSKSFESQLFIPA 151 (381)
T ss_pred HHHHHHhCCeEEEEec-C-C-----HH-HHHHHHHcCCcEEEEEeeEC-CCCchhhhhHHHHHHHHHHhhccCccceEEE
Confidence 4567899999999874 1 1 12 22222211112222222111 11110 0111 11111111 111113333
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCcCC-ccccccccCCCChhHHHHHHHHHHH
Q 010547 197 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLD-TRSYSTYLKTRPPSWEEAAIRELLT 274 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~ 274 (507)
+.+ +....++++.++++.+.|++++.++++|+.+... ........+.-.. ...+.......+... .++.+
T Consensus 152 ~~p---~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~---pv~~l-- 223 (381)
T cd01312 152 ISP---HAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLAT---AIDFL-- 223 (381)
T ss_pred ECC---CCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCC---HHHHH--
Confidence 332 3334678999999999999999999999854332 1111100000000 000000000000000 11222
Q ss_pred HHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHH
Q 010547 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLW 354 (507)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 354 (507)
.+. +. -+.++.+.|+... ..+.++.+++.|+.+.. ||.. ... ......++.
T Consensus 224 --~~~--g~--L~~~~~~~H~~~l--~~~~~~~l~~~g~~v~~--~P~s------n~~-------------lg~g~~p~~ 274 (381)
T cd01312 224 --DML--GG--LGTRVSFVHCVYA--NLEEAEILASRGASIAL--CPRS------NRL-------------LNGGKLDVS 274 (381)
T ss_pred --HHc--CC--CCCCcEEEECCcC--CHHHHHHHHHcCCeEEE--Ccch------hhh-------------hcCCCcCHH
Confidence 211 11 1567888898874 34567777888876544 6631 000 001123456
Q ss_pred HHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh--cCCCHHHHHHHHhhchhHHhCCCCC
Q 010547 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--YGVTLEQLASWWSERPAKLAGQVSK 432 (507)
Q Consensus 355 ~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~gls~~~al~~~T~n~A~~lgl~~~ 432 (507)
++++.|+.+++|||+.+++...++ ++. +......... ..++++++++++|.|||++||++ .
T Consensus 275 ~~~~~Gv~v~lGtD~~~~~~~~d~---------------~~~-~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~-~ 337 (381)
T cd01312 275 ELKKAGIPVSLGTDGLSSNISLSL---------------LDE-LRALLDLHPEEDLLELASELLLMATLGGARALGLN-N 337 (381)
T ss_pred HHHHCCCcEEEeCCCCccCCCCCH---------------HHH-HHHHHHhcccccccCCHHHHHHHHHHHHHHHhCCC-C
Confidence 888999999999997654322111 111 1111111111 13688999999999999999996 8
Q ss_pred CccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCE
Q 010547 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 487 (507)
Q Consensus 433 G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~ 487 (507)
|+|++||+||||++|.+.+. .+. ..++......+.|..|||+||
T Consensus 338 Gsle~Gk~ADlvv~d~~~~~-~~~----------~~~~~~~~~~~~v~~v~v~G~ 381 (381)
T cd01312 338 GEIEAGKRADFAVFELPGPG-IKE----------QAPLQFILHAKEVRHLFISGK 381 (381)
T ss_pred CccCCCCcccEEEEeCCCcC-CCC----------ccHHHHHHccCCCCEEEecCC
Confidence 99999999999999987641 111 222222223467999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-26 Score=225.18 Aligned_cols=397 Identities=19% Similarity=0.250 Sum_probs=223.6
Q ss_pred EEecEEECCCC-c--eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC-----C--
Q 010547 47 LTSKRIVTPKG-V--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW-----E-- 116 (507)
Q Consensus 47 i~n~~i~~~~~-~--~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~-----~-- 116 (507)
|+|++|+++.+ . .+++|+|+||+|++|++.. + +.++||++|++|+|||||+|+|+..+..... |
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~--~----~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~ 74 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA--K----PAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDH 74 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC--C----CCeEEECCCCEEECCeeeeeeCccccccccccccChhhh
Confidence 57999999865 3 4789999999999998643 1 4689999999999999999999975421100 0
Q ss_pred --------------------ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc----
Q 010547 117 --------------------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV---- 172 (507)
Q Consensus 117 --------------------~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 172 (507)
+.......+.+.|+||+++.. .|.... .....++.....++...+.-+.
T Consensus 75 ~~~~~~~~~~~~~~~g~~~pst~~tgy~ya~mGytt~~e~a---~~p~~a----~h~h~e~~~~p~~d~~~~~~~gnn~~ 147 (541)
T cd01304 75 RRDPVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAA---MPPLNA----RHTHEEMADTPILDKGAYPLLGNNWF 147 (541)
T ss_pred hccccccccccccCCCccCCCchHhhhHHHhcCcceeeccc---CCcccc----hhhhHHhccCccccccceEEecchHH
Confidence 111223577899999999875 133222 2222333333333332211111
Q ss_pred -----CCCc-ccH-HHHHHHH-HcCCcEEEEcccCCC----------------CCCCCCCCHHHHHHHHHHHHhcCCcEE
Q 010547 173 -----PENA-YNA-SALEALL-NAGVLGLKSFMCPSG----------------INDFPMTNASHIKEGLSVLARYKRPLL 228 (507)
Q Consensus 173 -----~~~~-~~~-~~~~~~~-~~g~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~a~~~~~~v~ 228 (507)
...+ +.. +-+..++ .....++|..- +.| .+.....+.+.+..+.+.+.+++++..
T Consensus 148 ~~~~~~~~~~~~~~~~vaw~l~~tk~~giK~vn-pgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~ 226 (541)
T cd01304 148 VLEYLRDGDMEKLAAYVAWTLKASKGYGIKVVN-PGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHS 226 (541)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccceEEEEEC-CCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 1111 111 2222222 24566777631 111 011223455667778888899998888
Q ss_pred EecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC----------Ch
Q 010547 229 VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS----------DA 298 (507)
Q Consensus 229 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~----------~~ 298 (507)
+|.+.... +.|. ..+...+.+++++....... -..+|+.|+. .-
T Consensus 227 iH~h~nnl----------------------g~pg--n~~~t~~t~~~~~~~~~~~~--~~~~h~tH~qfhsyg~~~~~~~ 280 (541)
T cd01304 227 IHVHCNNL----------------------GVPG--NYETTLETMKAAEGVKPDPR--RQVLHLTHVQFHSYGGTSWRDF 280 (541)
T ss_pred EEEccccC----------------------CCCC--cHHHHHHHHHHhhcCCCccc--cceeEeeeeeEEeeccCCcccH
Confidence 88642211 1222 33344666677664311000 1248888884 11
Q ss_pred hHHHHHHHHHHhCCCCEEEeccccccc----cccc------------------CC-CCCCCceeEcCCC-CChhhHHHH-
Q 010547 299 SSSLDLLMEAKTNGDSITVETCPHYLA----FSAE------------------EI-PDGDTRFKCAPPI-RDAANKEKL- 353 (507)
Q Consensus 299 ~~~~~~i~~~~~~g~~i~~~~~~~~~~----~~~~------------------~~-~~~~~~~~~~p~~-~~~~~~~~~- 353 (507)
....+.+.++...+.++++++..--+. .+.+ ++ ...+.. +.|-. +.......+
T Consensus 281 ~s~a~~i~~~~n~~~~it~D~G~v~f~~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~G--vvp~~y~~k~~v~~lq 358 (541)
T cd01304 281 ESGAERIADYVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSG--VVPFIYSPKNPVNALQ 358 (541)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCceecCCcEEEEccchhhcccccccCCceeeeeeEeccCCc--eEEeEecCCCCchHHH
Confidence 245566777777777776654422000 1100 00 011111 11221 122111222
Q ss_pred ------HHHHhcC-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhh---HHHHH---HHHH--------HhcCCCH
Q 010547 354 ------WEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVT---WSYG--------RKYGVTL 412 (507)
Q Consensus 354 ------~~~l~~G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~---~~~~--------~~~gls~ 412 (507)
.-++.+. -.+.++|||+- .|+|.+.+.-+.-+-. +...+ ...+ .+..+|+
T Consensus 359 waiglEl~ll~~dp~~~~~tTDhPn---------~gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSL 429 (541)
T cd01304 359 WAIGLELFLLIDDPWKVILTTDHPN---------GGPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSL 429 (541)
T ss_pred HHHHHHHHHHhCCcceEEeecCCCC---------CCCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCH
Confidence 1122233 37899999762 2445444322221110 00000 0111 1234799
Q ss_pred HHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 413 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 413 ~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
+++++++|.|||++||++++|+|++|+.|||+|+|.+.. .+... ++ .+ -....++|..||++|++|+++
T Consensus 430 eei~~mtT~nPAKiLGL~~kG~L~~G~~ADLvIfD~n~~-~v~~~-dl------~s---~~~~~gkV~~Tiv~GkvVv~d 498 (541)
T cd01304 430 YEIAIMTRAGPAKLLGLSDKGHLGVGADADIAIYDDDPD-QVDPS-DY------EK---VEKAFSRAAYVLKDGEIVVKD 498 (541)
T ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCcCCEEEEeCCcC-ccCch-hh------cC---ceeecCcEEEEEECCEEEEEC
Confidence 999999999999999996579999999999999998764 33222 11 11 134556899999999999999
Q ss_pred CcccCCCCCcccc
Q 010547 493 GNHAPAACGSPIL 505 (507)
Q Consensus 493 g~~~~~~~~~~~~ 505 (507)
|+++....|+.+.
T Consensus 499 Geiv~~~~G~~l~ 511 (541)
T cd01304 499 GEVVAEPWGRTYW 511 (541)
T ss_pred CEEccCCCCcEEE
Confidence 9998877788764
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-26 Score=210.41 Aligned_cols=418 Identities=21% Similarity=0.226 Sum_probs=234.3
Q ss_pred CCcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG 117 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~ 117 (507)
....+++|+++.|+|+.+ .+..+|-|+||+|+.|++...... ...++||+.|++|.|||||+|+|.......+
T Consensus 3 ~~~YD~ViR~g~ifDGtGnp~f~tdvgIrDGvIaav~kg~~dg~--~~~eevDaagriVaPGFIDvHtHyD~~~~~d--- 77 (579)
T COG3653 3 MVTYDVVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGT--GCPEEVDAAGRIVAPGFIDVHTHYDAEVLLD--- 77 (579)
T ss_pred ceeeeEEEeeceEEeCCCCCccccccccccceEEEEeccccccc--CCCeeecccCcEecccEEEeeecccceeeec---
Confidence 346789999999999887 578899999999999998765432 1348999999999999999999976532221
Q ss_pred hhHHHHHHHhCCceEEEeCCCCCCCCC----------------------------CCHHHHHHHHHHHhcC-ceeeEEEe
Q 010547 118 FPSGTKAAAAGGITTLIDMPLNSDPST----------------------------ISTETLKLKVDAAEKR-IYVDVGFW 168 (507)
Q Consensus 118 ~~~~~~~~l~~GvTt~~~~~~~~~p~~----------------------------~~~~~~~~~~~~~~~~-~~~~~~~~ 168 (507)
...+....+||||++...|+.+... +.++.+.+++++++.. ..+++...
T Consensus 78 --~~l~psv~hGVTTVv~GNCgis~ap~n~ed~d~l~s~ve~v~~e~~~~~~~~~~~w~tf~eyleale~~plgvnv~al 155 (579)
T COG3653 78 --PGLRPSVRHGVTTVVLGNCGISTAPANSEDADDLFSRVEAVGREFVFGALRDNQTWSTFAEYLEALEALPLGVNVSAL 155 (579)
T ss_pred --CCccchhhcCeeEEEecCcccccccCChhhhhhhhhhhhhcCccccccccccccccCCHHHHHHHHHhCccCCChhhh
Confidence 1235567899999998654322111 1233444455544432 12333322
Q ss_pred ccc-------------cCCCcc------cHHHHHHHHHcCCcEEEEc--ccCCCC-----CCCCCCCHHHHHHHHHHHHh
Q 010547 169 GGL-------------VPENAY------NASALEALLNAGVLGLKSF--MCPSGI-----NDFPMTNASHIKEGLSVLAR 222 (507)
Q Consensus 169 ~~~-------------~~~~~~------~~~~~~~~~~~g~~~~~~~--~~~~~~-----~~~~~~~~~~l~~~~~~a~~ 222 (507)
.+. ..+++. ..+.+.+.+++|+.|++.- +..-.. ...+..+++....++..|+.
T Consensus 156 lgH~aLR~avmg~~~a~~~p~TeaelaaMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~a 235 (579)
T COG3653 156 LGHSALRTAVLGLDRATDDPPTEAELAAMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVARA 235 (579)
T ss_pred cchHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHHh
Confidence 211 111111 2344566677899988721 111111 12233567777777777766
Q ss_pred cCC-cEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh---
Q 010547 223 YKR-PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--- 298 (507)
Q Consensus 223 ~~~-~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~--- 298 (507)
-+. ...+|..... ....+++.+....... ..+.++...|...+
T Consensus 236 g~~iLqst~d~~eg---------------------------aa~L~~l~~a~ri~~R------~~~vr~v~s~~a~ag~~ 282 (579)
T COG3653 236 GGRILQSTHDRDEG---------------------------AAALEALLEASRIGNR------RKGVRMVMSHSADAGSM 282 (579)
T ss_pred cCceeEeeccccch---------------------------HHHHHHHHHHHHhcCc------ccCceEEEecccccccc
Confidence 553 4444542221 1233344444444422 34667777766422
Q ss_pred -----hHHHHHHHHHHhCCCCEEEecccccccc-cc--------------------------------------------
Q 010547 299 -----SSSLDLLMEAKTNGDSITVETCPHYLAF-SA-------------------------------------------- 328 (507)
Q Consensus 299 -----~~~~~~i~~~~~~g~~i~~~~~~~~~~~-~~-------------------------------------------- 328 (507)
-.....+.+++..|.++.+.+.|.-..+ ..
T Consensus 283 n~~~a~~~lgl~~kaq~~G~pVg~~~~p~~a~~ys~~~~~p~~~e~g~~~~~~~lrD~~~R~~l~~d~~~r~~f~~~~~~ 362 (579)
T COG3653 283 NWGVAVFGLGLIEKAQLLGSPVGFDHYPYTAELYSDGIDLPVFEEFGAGTAALHLRDQLQRNELLADRSYRDSFRRIKLG 362 (579)
T ss_pred chhhhhhccchHHHHHHhCCcceeeecccccchhccCCcchhhhhcccchhhhhhcCHHHHHHHHhhhhhcchhhhcccc
Confidence 1345566666666777766555432200 00
Q ss_pred -cCCCCCCCceeEcCCCCChhhH--------------HHHHHHHhc-----CCeeEEeCCCCCCChhhhccc--------
Q 010547 329 -EEIPDGDTRFKCAPPIRDAANK--------------EKLWEALMD-----GHIDMLSSDHSPTVPELKLLD-------- 380 (507)
Q Consensus 329 -~~~~~~~~~~~~~p~~~~~~~~--------------~~~~~~l~~-----G~~~~lgtD~~~~~~~~~~~~-------- 380 (507)
+.+.+....+..+|+.....++ +.+.+.+.. |-..++--++.+-+.+..+..
T Consensus 363 ~~~W~n~~~vi~~~pd~p~~agKsl~aIAd~~grdp~da~lD~Lardg~~~~~~~~i~an~s~e~l~rilahp~tviG~s 442 (579)
T COG3653 363 PSLWHNHDIVITESPDKPELAGKSLKAIADERGRDPLDAFLDVLARDGERAGRWTTIVANMSPEDLNRILAHPSTVIGFS 442 (579)
T ss_pred cccccccceeEEeCCCCchhhhhhHHHHHHHhCCCHHHHHHHHHHhcccccceeEEEEecCCcchHHHHhcCCccccccC
Confidence 0000111223334432111110 111112221 212223333222222111100
Q ss_pred -cCCccccCCCCchhhhHHHHHHHHHHhc----CCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeC
Q 010547 381 -EGNFLKAWGGISSLQFVLPVTWSYGRKY----GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 455 (507)
Q Consensus 381 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~----gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~ 455 (507)
.|.....+ .+.++.. ..+.++.++. -++++.+++-.|..+|+.+|+.++|.|.+|+.|||+|+|+....+..
T Consensus 443 d~gahl~~~-~~~~f~~--rvL~~~~rer~~gp~l~Le~av~rmT~~~Ae~~GL~drGlvreG~rADl~viDp~~vr~~a 519 (579)
T COG3653 443 DAGAHLPHP-RFYGFFP--RVLKRYRRERRAGPLLSLERAVRRMTGELAEWFGLGDRGLVREGDRADLVVIDPHLVRDVA 519 (579)
T ss_pred CCCCCCCcc-cccccch--HHHHHHHhhhccCCcccHHHHHHHHhccHHHHhCcccccccccccccceEEEccccccccc
Confidence 00000000 1111111 2223333332 39999999999999999999977899999999999999987655432
Q ss_pred CCCCcccCCCCCccccCcEEe---eEEEEEEECCEEEEecCcccC-CCCCccccc
Q 010547 456 NDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAP-AACGSPILA 506 (507)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G~~v~~~g~~~~-~~~~~~~~~ 506 (507)
-+.++ ..|+.|+... -.|..|.|+|.+.+++|++++ ..+||++|+
T Consensus 520 -----~y~~~-~lPa~G~~~~~vn~~~vat~v~Gvvs~rdGe~tg~~~aGR~lR~ 568 (579)
T COG3653 520 -----TYTEP-ALPAYGILRVMVNRNVVATGVGGVVSFRDGEFTGQVKAGRYLRA 568 (579)
T ss_pred -----cccCc-cCCCCcceEEEEeccceeeecceeEEEecCcccCcccccchhcc
Confidence 23455 6677665543 236677888999999999998 799999986
|
|
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-27 Score=211.14 Aligned_cols=357 Identities=21% Similarity=0.246 Sum_probs=217.9
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccC-----CCCCCCCCC--
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-----DPGRTEWEG-- 117 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~-----~~~~~~~~~-- 117 (507)
+++.|++|+..|.+.++.|+|+||+|..|...... ....+|+.|.+++|||||+|+--- ..+...|..
T Consensus 1 ~~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~-----~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~a 75 (377)
T COG3454 1 MILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP-----LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIA 75 (377)
T ss_pred CccccceEEeecceeeeeEEEecceEeeeccccCc-----ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchH
Confidence 36889999999999999999999999999877543 256789999999999999999332 223333332
Q ss_pred -hhHHHHHHHhCCceEEEeCCC--CCCCCCCCHHHHHHHHHHHh-----cCceeeEEEeccccCCCcccHHHHHHHHHcC
Q 010547 118 -FPSGTKAAAAGGITTLIDMPL--NSDPSTISTETLKLKVDAAE-----KRIYVDVGFWGGLVPENAYNASALEALLNAG 189 (507)
Q Consensus 118 -~~~~~~~~l~~GvTt~~~~~~--~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (507)
+.......+..|+||+.+... .........+.+...++.+. +....+-.++.......+...+.++++.+.+
T Consensus 76 Ai~ahD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p 155 (377)
T COG3454 76 AILAHDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHP 155 (377)
T ss_pred HHHHhhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCC
Confidence 233445778999999998641 11112222334455444443 3445566777777777778888999999988
Q ss_pred CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
...+...|.+..+ .. ....+.+-.+..++ +++ ....+ ...+.... . .........
T Consensus 156 ~v~LiSlMDH~PG--Qr--Qf~~le~Y~~yy~~k~~~------s~~e~-~~~i~~r~-a------------~~~~y~~~~ 211 (377)
T COG3454 156 RVKLISLMDHTPG--QR--QFANLEKYREYYQGKRGL------SDEEF-AEFIEERQ-A------------LSARYSDPN 211 (377)
T ss_pred CeeEEEecCCCCC--cc--hhhhHHHHHHHHHhhcCC------CHHHH-HHHHHHHH-H------------HHhhcccch
Confidence 8887777755321 11 11111111111111 111 00000 00000000 0 000011112
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCC-CC-
Q 010547 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI-RD- 346 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~- 346 (507)
...+..++.+. |+. ...| .+.+.+.+++....|+.+.- +|..+.........+-...+..|.+ |.
T Consensus 212 r~~i~~~c~~r-------gI~-lASH---DDaT~~hV~es~~~Gv~iAE--FPtT~eAA~asr~~Gm~VlMGAPNivrGg 278 (377)
T COG3454 212 RQAIAALCRER-------GIA-LASH---DDATVEHVAESHGLGVAIAE--FPTTVEAAKASRELGMQVLMGAPNIVRGG 278 (377)
T ss_pred HHHHHHHHHHc-------CCc-eecC---CcCcHHHHHHHHhcCeeEEe--CccHHHHHHHHHHhCchhhcCCCceeccC
Confidence 34455555543 322 1223 22456667777677765543 3433333333333334445566664 33
Q ss_pred -hhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHHHHHHHHhhchh
Q 010547 347 -AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQLASWWSERPA 424 (507)
Q Consensus 347 -~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-gls~~~al~~~T~n~A 424 (507)
.+..-+..++.+.|+.+.++||+.|.+. +...+..+.+. .+++++|++++|.|||
T Consensus 279 SHsGNvsA~ela~~glLDiLsSDY~P~SL-----------------------l~A~F~La~~~~~~~lpqAvalvt~nPA 335 (377)
T COG3454 279 SHSGNVSARELAQHGLLDILSSDYVPASL-----------------------LHAAFRLADLGSNISLPQAVALVTKNPA 335 (377)
T ss_pred CcccchhHHHHHhCCceeeecccCCcHHH-----------------------HHHHHHHhhhhcccCHHHHHHHhccCHH
Confidence 3334455778888999999999987654 33333344333 3589999999999999
Q ss_pred HHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEE
Q 010547 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490 (507)
Q Consensus 425 ~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~ 490 (507)
+++|+.++|+|++|++||||.+..+.. .+ .|..||+.||.|+
T Consensus 336 ~algl~DRG~Ia~GlrADlv~v~~~~~------------vp------------~ir~vwr~G~rv~ 377 (377)
T COG3454 336 RALGLTDRGRIAPGLRADLVRVRRDGG------------VP------------VIRTVWRAGKRVA 377 (377)
T ss_pred HhcCCCcccccccccccceEEEecCCC------------Cc------------eeeeeeecceecC
Confidence 999998899999999999998876542 13 6899999999874
|
|
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=223.84 Aligned_cols=358 Identities=15% Similarity=0.109 Sum_probs=202.2
Q ss_pred eeeEEEeC-CEEEEeecCCCCCCCC-------CCCcEEecCCCEEecceeecccccC-CC-----C----CCCC------
Q 010547 60 SGAVEIKE-GNIISIVSEEDWPRNS-------KTGQVVDYGEAVIMPGLIDVHAHLD-DP-----G----RTEW------ 115 (507)
Q Consensus 60 ~~~I~I~d-G~I~~Vg~~~~~~~~~-------~~~~viD~~g~~v~PGfID~H~H~~-~~-----~----~~~~------ 115 (507)
+..+.|.| |+|+.|++....+... +..++++.+|+++||||||+|+|+. +. + ...|
T Consensus 27 ~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~f 106 (439)
T KOG3968|consen 27 GSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYTF 106 (439)
T ss_pred CcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhccee
Confidence 45568876 9999999876554211 2457899999999999999999941 10 0 0000
Q ss_pred -------------CChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcc-----
Q 010547 116 -------------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY----- 177 (507)
Q Consensus 116 -------------~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 177 (507)
+.+....++++++||||+..+. + -..+....+.+.......+..+.....-.-.-..+.
T Consensus 107 ~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~--~-~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~ 183 (439)
T KOG3968|consen 107 PLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFS--T-LHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETT 183 (439)
T ss_pred ecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhh--c-cCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhH
Confidence 1234556789999999998764 1 222333333343333333444333221101001111
Q ss_pred --c----HHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-CcccchhhhhcccCcCCc
Q 010547 178 --N----ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-MEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 178 --~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~-~~~~~~~~~~~~~~~~~~ 250 (507)
. .+.+..+.+.+........ .+...+.++.+.+....++|+.++.++++|.. +..++....
T Consensus 184 E~si~~t~~~i~~~~~~~~~~~~~~v---t~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~--------- 251 (439)
T KOG3968|consen 184 EESIESTEDLIPKLEKLKREKVNPIV---TPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVK--------- 251 (439)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcc---cccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHH---------
Confidence 1 1122222222211111100 11334568888889888999999999999964 333322111
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccC
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~ 330 (507)
..+|+...+..+.....++.+. ..-.|..|++.. .+.-+.++|..+. +||..-..
T Consensus 252 -------~ff~~~~~y~~~yd~~~lL~~k-------tvlaH~~hl~d~-----ei~~l~k~g~svs--hCP~Sn~~---- 306 (439)
T KOG3968|consen 252 -------NFFPEKLSYTDVYDKGGLLTEK-------TVLAHLEHLSDE-----EIELLAKRGCSVS--HCPTSNSI---- 306 (439)
T ss_pred -------HhhhhcccchHHHHHhcccchH-------hHhhhheecCch-----hHHHHHhcCCceE--ECCcchhh----
Confidence 1122222222222222222211 233677777763 4444555565544 46631110
Q ss_pred CCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 010547 331 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 409 (507)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g 409 (507)
.......+.++++.|+.+.+|||-++++....++. ...+...+... ....
T Consensus 307 ---------------L~sG~~~vr~lL~~~v~VgLGtDv~~~s~l~a~r~--------------A~~~s~hL~~~~~~~~ 357 (439)
T KOG3968|consen 307 ---------------LGSGIPRVRELLDIGVIVGLGTDVSGCSILNALRQ--------------AMPMSMHLACVLDVMK 357 (439)
T ss_pred ---------------hccCCccHHHHHhcCceEeecCCccccccHHHHHH--------------HHHHHHHHHhccCccc
Confidence 11223356788999999999999887554432211 11122222212 2357
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee---EEEEEEEC
Q 010547 410 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG---KVLATISR 485 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~~v~v~ 485 (507)
+|++|++.+||.|+|++||+ +..|++++||++|++++|.+.+... ++.-....+.+.-+...| .|..|||+
T Consensus 358 Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~-----l~~~~~~~~lI~~~v~~g~drni~~V~V~ 432 (439)
T KOG3968|consen 358 LSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPESP-----LYRFSGHHDLISKVVYNGDDRNIAEVFVA 432 (439)
T ss_pred CCHHHHHHHHhccchhhccCCCcccceecccccceEEEeCCCCcch-----hhhccchHHHHHHHHhcCCCCceEEEEEc
Confidence 99999999999999999999 7799999999999999998875221 111110022333334445 79999999
Q ss_pred CEEEEe
Q 010547 486 GNLVYK 491 (507)
Q Consensus 486 G~~v~~ 491 (507)
||.|+.
T Consensus 433 Gk~v~~ 438 (439)
T KOG3968|consen 433 GKLVKQ 438 (439)
T ss_pred cEEecc
Confidence 999974
|
|
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=223.90 Aligned_cols=352 Identities=16% Similarity=0.158 Sum_probs=206.1
Q ss_pred eEEEEecEEECCCC----------ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC
Q 010547 44 QYWLTSKRIVTPKG----------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (507)
Q Consensus 44 ~~~i~n~~i~~~~~----------~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~ 113 (507)
.+.|+|+++..+.. ....+|.|+||+|++|++....+. .+.++||++|++|+|||||+|+|+......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~--~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~ 82 (410)
T PRK06846 5 HYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQVPD--ATLPTYDANGLLMLPAFREMHIHLDKTYYG 82 (410)
T ss_pred ceEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCCCC--CCCceEeCCCCEEecCEEeeeecccchhhc
Confidence 45677777654322 246799999999999998632211 246899999999999999999999753211
Q ss_pred -CCC------------------------Ch----hHHHHHHHhCCceEEEeCCCCCCCCCC--CHHHHHHHHHHHhcCce
Q 010547 114 -EWE------------------------GF----PSGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKVDAAEKRIY 162 (507)
Q Consensus 114 -~~~------------------------~~----~~~~~~~l~~GvTt~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~ 162 (507)
... .. ......++++|+|+++++. ...|... ..+.+.+..+.......
T Consensus 83 ~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v-~~~~~~~~~~~~a~~e~l~e~~~~v~ 161 (410)
T PRK06846 83 GPWKACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHC-NIDPVIGLKNLENLQAALERYKDGFT 161 (410)
T ss_pred cchhhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEE-eeCcccccchHHHHHHHHHHhhCcce
Confidence 000 00 1234456688999988775 3333221 12222233333332222
Q ss_pred eeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhh
Q 010547 163 VDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 242 (507)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 242 (507)
..+..+...........+.+++..+.|+..++.+ .+ ......+++.+.++++.|+++|.++.+|..+...
T Consensus 162 ~~~~a~~~~g~~~~~~~~lL~~al~~Ga~~i~gl-~p---~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~------ 231 (410)
T PRK06846 162 YEIVAFPQHGLLRSNSEPLMREAMKMGAHLVGGV-DP---ASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGP------ 231 (410)
T ss_pred EEEEeccCcccCCccHHHHHHHHHHcCCCEEeCC-CC---ccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCC------
Confidence 2222211100001334567888888888755542 11 2223567889999999999999999999854321
Q ss_pred cccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC-----hhHHHHHHHHHHhCCCCEEE
Q 010547 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD-----ASSSLDLLMEAKTNGDSITV 317 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~-----~~~~~~~i~~~~~~g~~i~~ 317 (507)
.....+++..+...+.+. .+ ++++.|+.. ..+..+.++.+++.|+.+..
T Consensus 232 ---------------------~~~~~~~~~~~~~~~~gl----~~-~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~ 285 (410)
T PRK06846 232 ---------------------LGVATIKYLVETTEEAQW----KG-KVTISHAFALGDLNEEEVEELAERLAAQGISITS 285 (410)
T ss_pred ---------------------hhHHHHHHHHHHHHHhCC----CC-CEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 011223445555555421 13 688888863 11333346678888876653
Q ss_pred ecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCC--CChhhhccccCCccccCCCCchhh
Q 010547 318 ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP--TVPELKLLDEGNFLKAWGGISSLQ 395 (507)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 395 (507)
. .+ + + ....++.++++.|+++++|||+.. ++... ....++
T Consensus 286 ~-~~----~--------~------------~g~~p~~~l~~~Gv~v~lGtD~~~~~~~p~~-------------~~d~~~ 327 (410)
T PRK06846 286 T-VP----I--------G------------RLHMPIPLLHDKGVKVSLGTDSVIDHWSPFG-------------TGDMLE 327 (410)
T ss_pred e-CC----C--------C------------CCCCCHHHHHhCCCeEEEecCCCCCCCcCCC-------------CCCHHH
Confidence 1 11 0 0 011235677888999999999752 11110 111111
Q ss_pred hHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCc
Q 010547 396 FVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR 473 (507)
Q Consensus 396 ~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (507)
. +........ ...-++.++++++|.+ |+.+++ ..+|+|++||.||||++|.+.+... .
T Consensus 328 ~-~~~~~~~~~~~~~~~~~~~l~~~T~~-a~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~------------------~ 387 (410)
T PRK06846 328 K-ANLLAELYRWSDERSLSRSLALATGG-VLPLNDEGERVWPKVGDEASFVLVDASCSAEA------------------V 387 (410)
T ss_pred H-HHHHHHHhcCCCHHHHHHHHHHHcCC-ccccccCCCccCCCCCCcccEEEEeCCChHHH------------------H
Confidence 1 111111000 0012345899999988 456787 6679999999999999997642211 0
Q ss_pred EEeeEEEEEEECCEEEEec
Q 010547 474 RLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 474 ~~~~~V~~v~v~G~~v~~~ 492 (507)
.....|..||++|++||..
T Consensus 388 ~~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 388 ARQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred HhcCCceEEEECCEEEeee
Confidence 1113699999999999974
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=230.72 Aligned_cols=289 Identities=22% Similarity=0.124 Sum_probs=176.1
Q ss_pred CcEEecCCCEEecceeecccccCCCCCCCCC-----------ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHH
Q 010547 86 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE-----------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 154 (507)
Q Consensus 86 ~~viD~~g~~v~PGfID~H~H~~~~~~~~~~-----------~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~ 154 (507)
+++||++|++|+|||||+|+|+......... ......+.++++||||+++++ +..+. . +....
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g-~~~~~----~-~~~~~ 74 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAG-GADYG----L-LRDAI 74 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCC-CcchH----H-HHHHH
Confidence 3689999999999999999998664222111 112457788999999999986 22111 1 22222
Q ss_pred HHHhc-Ccee--------------eEEE---------eccccCCCcccHHHHHHHHHcCCcEEEEcccCCC-----CCCC
Q 010547 155 DAAEK-RIYV--------------DVGF---------WGGLVPENAYNASALEALLNAGVLGLKSFMCPSG-----INDF 205 (507)
Q Consensus 155 ~~~~~-~~~~--------------~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~ 205 (507)
..... ...+ ++.. +.......++..+.++++.+.|+..+|.|+.... ..+.
T Consensus 75 ~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~ 154 (342)
T cd01299 75 DAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPD 154 (342)
T ss_pred HcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcc
Confidence 21111 0111 1000 0111122233466788888899999999874321 1112
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCC
Q 010547 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285 (507)
Q Consensus 206 ~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 285 (507)
+..+++.+.++++.|++.++++.+|+.... .+...++.
T Consensus 155 ~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~--------------------------------~i~~~l~~---------- 192 (342)
T cd01299 155 TQFSEEELRAIVDEAHKAGLYVAAHAYGAE--------------------------------AIRRAIRA---------- 192 (342)
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------HHHHHHHc----------
Confidence 357899999999999999999999995422 12233322
Q ss_pred CCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCC-C------ChhhHHHHHHHHh
Q 010547 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI-R------DAANKEKLWEALM 358 (507)
Q Consensus 286 ~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~------~~~~~~~~~~~l~ 358 (507)
|. ..+.|+.. ...+.++.+++.|+.+. +|+......... . .....++- . .......+.++.+
T Consensus 193 -G~-~~i~H~~~--~~~~~~~~l~~~g~~~~--~t~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 261 (342)
T cd01299 193 -GV-DTIEHGFL--IDDETIELMKEKGIFLV--PTLATYEALAAE----G-AAPGLPADSAEKVALVLEAGRDALRRAHK 261 (342)
T ss_pred -CC-CEEeecCC--CCHHHHHHHHHCCcEEe--CcHHHHHHHHhh----c-cccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 13677765 33456777888887654 344321110000 0 00000000 0 1123356678888
Q ss_pred cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCcccc
Q 010547 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAI 437 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~ 437 (507)
.|+++++|||....... +.. +...+....+.+++++++++++|.|||+++|+ +++|+|++
T Consensus 262 ~Gv~v~~GTD~~~~~~~--------------~~~-----~~~e~~~~~~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~ 322 (342)
T cd01299 262 AGVKIAFGTDAGFPVPP--------------HGW-----NARELELLVKAGGTPAEALRAATANAAELLGLSDELGVIEA 322 (342)
T ss_pred cCCeEEEecCCCCCCCc--------------hhH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCccCCcceECC
Confidence 99999999997631100 000 11223344567899999999999999999999 67899999
Q ss_pred CCCCcEEEEcCCCce
Q 010547 438 GNHADLVVWEPEAEF 452 (507)
Q Consensus 438 G~~ADlvvld~~~~~ 452 (507)
||.|||+++|.|+..
T Consensus 323 G~~ADlvvl~~~pl~ 337 (342)
T cd01299 323 GKLADLLVVDGDPLE 337 (342)
T ss_pred CCcCCEEEECCChhh
Confidence 999999999987643
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=227.77 Aligned_cols=175 Identities=20% Similarity=0.280 Sum_probs=120.1
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---CCCChhHH
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSG 121 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~---~~~~~~~~ 121 (507)
++|+|++|+++....+++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+..+... ..+.+...
T Consensus 1 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~---~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~ 77 (374)
T cd00854 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELE---EADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTI 77 (374)
T ss_pred CEEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcc---cCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHH
Confidence 479999999984456789999999999998765432 246899999999999999999999754221 24667788
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcC---ceeeEEEeccccCCCc-----------ccHHHHHHHHH
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR---IYVDVGFWGGLVPENA-----------YNASALEALLN 187 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 187 (507)
.+.++++||||+++++ .+.+.....+.+....+..+.. ....++..+++..... ...++++++.+
T Consensus 78 ~~~~~~~GvTtv~~t~-~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~ 156 (374)
T cd00854 78 AEALAKHGTTSFLPTT-VTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLE 156 (374)
T ss_pred HHHHHccCcceeeccc-cCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHH
Confidence 8899999999999876 3333333333444444444332 1222334444432211 13467788887
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHH--HHHHHHHHhcCCcEE-EecCC
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHI--KEGLSVLARYKRPLL-VHAEM 233 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~a~~~~~~v~-~H~~~ 233 (507)
.+...+|.+. ..+|.. .++++.++++|+++. .|...
T Consensus 157 ~~~~~ik~~t----------laPE~~~~~~~i~~~~~~gi~v~~GH~~a 195 (374)
T cd00854 157 AAGGLIKLVT----------LAPELDGALELIRYLVERGIIVSIGHSDA 195 (374)
T ss_pred hcCCCEEEEE----------ECCCCCChHHHHHHHHHCCeEEEeeCCcC
Confidence 7776777752 233444 688999999999995 88753
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-25 Score=218.07 Aligned_cols=337 Identities=20% Similarity=0.241 Sum_probs=190.2
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCC-CEEecceeecccccCCCCCCCCCChhHHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g-~~v~PGfID~H~H~~~~~~~~~~~~~~~~ 122 (507)
+++|+|++|+++. ..+|+|+||||++|++....+ +.++||++| ++|+|||||+|+|+..+.....++..
T Consensus 2 ~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~~----~~~~iD~~g~~~l~PG~ID~H~H~~~~~~~~~~~~~--- 71 (365)
T TIGR03583 2 DLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITGS----AKQTIDLEGETYVSAGWIDDHTHCFPKSALYYDEPD--- 71 (365)
T ss_pred cEEEECcEEecCC---eeEEEEECCEEEEecCCCCCC----CCeEEECCCCeEEecCEEEeeeccCCCcccccCCHh---
Confidence 5899999999853 458999999999998643322 468999999 99999999999999865443333332
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCc--eeeEEEeccccCC-C-----cccHHHHHHHHH---cCCc
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPE-N-----AYNASALEALLN---AGVL 191 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-----~~~~~~~~~~~~---~g~~ 191 (507)
..++++|||++++++ .+.+ ...+.+....+....+. .++....+ ..+. . ....++++++.. .++.
T Consensus 72 ~~a~~~GvTt~~~~~-~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~G-~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv 147 (365)
T TIGR03583 72 EIGVKTGVTTVVDAG-STGA--DDIDDFYRLAQQAKTNVFALLNISRIG-LVAQDELADLSNLDASAVKQAVERYPDFIV 147 (365)
T ss_pred HhhhcCceeEEEeCC-CCCC--CCHHHHHHHHHhhCCcEEEEeeehhcc-ccChhhhhChHHhHHHHHHHHHHhCcCcEE
Confidence 446899999999876 2222 44555555544433221 12222122 2111 1 112334443443 2466
Q ss_pred EEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHH
Q 010547 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271 (507)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 271 (507)
+++.+++.....+. ..++..+.+.+..+ +.+.++.+|+..... +. .+
T Consensus 148 ~~~~~~t~~~i~E~-gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~----------------------------~~---~~ 194 (365)
T TIGR03583 148 GLKARMSKSVVGDN-GIEPLEIAKQIQQE-NLELPLMVHIGSAPP----------------------------EL---DE 194 (365)
T ss_pred EEEEeecccccccC-CcCHHHHHHHHHHh-cCCCcEEEEeCCCcc----------------------------CH---HH
Confidence 77777653221221 22354555555444 689999999965432 11 22
Q ss_pred HHHHHHhhccCCCCCCceEEEEecCChh---------HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcC
Q 010547 272 LLTVAKDTRTDGPAEGAHLHIVHLSDAS---------SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAP 342 (507)
Q Consensus 272 ~~~l~~~~~~~~~~~g~~~~~~h~~~~~---------~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p 342 (507)
++..... |. ...|+.+.. ...+.+......|+-+...+...
T Consensus 195 i~~~~~~--------g~--~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg~~-------------------- 244 (365)
T TIGR03583 195 ILALMEK--------GD--VLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTA-------------------- 244 (365)
T ss_pred HHHHhcC--------CC--eeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCCCC--------------------
Confidence 2222211 31 356665421 12245555555564433221000
Q ss_pred CCCChhhHHHHHHHHhcCC-eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhh
Q 010547 343 PIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 421 (507)
Q Consensus 343 ~~~~~~~~~~~~~~l~~G~-~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~ 421 (507)
........++...++ .++.++|.... +...+-...+...++.+...|++++++++++|.
T Consensus 245 ----~~~~~~~~~~~~~~~~~~td~~d~~~~----------------~~~~gp~~~l~~~~~~~~~~g~~~~ea~~~~t~ 304 (365)
T TIGR03583 245 ----SFSFHVAEKAKRAGIFPDTISTDIYIR----------------NRINGPVYSLATVMSKFLALGYSLEEVIEKVTK 304 (365)
T ss_pred ----CchHHHHHHHHhCCCCCcccccccccC----------------CCccCccccHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 001111222233342 24445553110 011222222444455444679999999999999
Q ss_pred chhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeE----EEEEEECCEEE
Q 010547 422 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK----VLATISRGNLV 489 (507)
Q Consensus 422 n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----V~~v~v~G~~v 489 (507)
|||++||+++.|+|++|+.|||+++|.++.... ..-.+|.++.+. ...|+++|+..
T Consensus 305 npa~~~gl~~~g~i~~g~~ad~~~~~~~~~~~~------------~~~~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 305 NAAEILKLTQKGRLQEGYDADLTIFTVKAEPKK------------LTDSEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred HHHHHhCCCCCCCcCCCCcccEEEEecCCCCce------------eecCCCCEEEeccccceEEEEECCEEe
Confidence 999999995589999999999999997542211 111223333322 56788898864
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=216.81 Aligned_cols=296 Identities=21% Similarity=0.294 Sum_probs=186.5
Q ss_pred eEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCC
Q 010547 62 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD 141 (507)
Q Consensus 62 ~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~ 141 (507)
+|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..++....+ ...+.++++||||+++++ ...
T Consensus 1 ~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~---~~~~~a~~~GvTtvvd~~-~~~ 73 (338)
T cd01307 1 DVAIENGKIAAVGAALAAP---AATQIVDAGGCYVSPGWIDLHVHVYQGGTRYGD---RPDMIGVKSGVTTVVDAG-SAG 73 (338)
T ss_pred CEEEECCEEEEccCCCCCC---CCCeEEECCCCEEecCeEEeeecCCCCCcccCC---CHhHHHHcCceeEEEeCC-CCC
Confidence 5899999999999864332 247899999999999999999999887654333 367788999999999997 333
Q ss_pred CCCCCHHHHHHHH-HHHhc--CceeeEEEeccccCCC-cc----cHHHHHHH---HHcCCcEEEEcccCCCCCCCCCCCH
Q 010547 142 PSTISTETLKLKV-DAAEK--RIYVDVGFWGGLVPEN-AY----NASALEAL---LNAGVLGLKSFMCPSGINDFPMTNA 210 (507)
Q Consensus 142 p~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~-~~----~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~ 210 (507)
+ ...+.+.... +.... ..++++.+++...... ++ ..+.+.+. ...|+.+++.++...... ....
T Consensus 74 ~--~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~---~~~~ 148 (338)
T cd01307 74 A--DNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVG---EWGI 148 (338)
T ss_pred C--CCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeeccccc---ccCC
Confidence 3 4455533333 34443 4566666665442211 11 12222222 346888898876432211 1233
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceE
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 290 (507)
..++...+.+++.+.++.+|++.... + +...+.+... + .
T Consensus 149 ~~l~~~~~~a~~~~~pi~vH~~~~~~----------------------------~---~~~~~~~l~~--------g--~ 187 (338)
T cd01307 149 KPLELAKKIAKEADLPLMVHIGSPPP----------------------------I---LDEVVPLLRR--------G--D 187 (338)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCC----------------------------C---HHHHHHHhcC--------C--C
Confidence 44888999999999999999965432 1 1222222221 3 2
Q ss_pred EEEecCChh---------HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC
Q 010547 291 HIVHLSDAS---------SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (507)
Q Consensus 291 ~~~h~~~~~---------~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~ 361 (507)
...|+.... ...+.++++.+.|..+...... .........+++++|+
T Consensus 188 ~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~------------------------~~~~~~~~~~l~~~G~ 243 (338)
T cd01307 188 VLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGT------------------------ASFSFRVARAAIAAGL 243 (338)
T ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCC------------------------CchhHHHHHHHHHCCC
Confidence 355554320 0135677777777653321100 0011123345677786
Q ss_pred -eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 362 -IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 362 -~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
..++++|....... .+....+...+......+++++++++++|.|||++||+++.|+|++|+.
T Consensus 244 ~~~~lstD~~~~~~~----------------~~p~~~l~~~l~~l~~~gi~~ee~~~~~T~NpA~~lgl~~~G~l~~G~~ 307 (338)
T cd01307 244 LPDTISSDIHGRNRT----------------NGPVYALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYD 307 (338)
T ss_pred CCeeecCCccccCCC----------------CCccccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCc
Confidence 46899997422110 0011113333444456799999999999999999999966899999999
Q ss_pred CcEEEEcCCC
Q 010547 441 ADLVVWEPEA 450 (507)
Q Consensus 441 ADlvvld~~~ 450 (507)
|||++++.+.
T Consensus 308 ad~~v~~~~~ 317 (338)
T cd01307 308 ADLTVFDLKD 317 (338)
T ss_pred CCEEEEeCCC
Confidence 9999999764
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-25 Score=213.68 Aligned_cols=296 Identities=20% Similarity=0.217 Sum_probs=225.0
Q ss_pred EEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcC--ceeeEEEecccc
Q 010547 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLV 172 (507)
Q Consensus 95 ~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 172 (507)
+.+|---|+|.|+-++. +....--+.++|+|+++++| ++.|.....+.+..+.+.+... ..+++.+++++.
T Consensus 23 ~~~~~~~d~h~hlr~~~------~~~~~~~~~~gg~t~~i~MP-n~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~ 95 (364)
T PLN02599 23 LTITRPDDWHLHLRDGA------KLAAVVPHSARHFGRAIVMP-NLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLY 95 (364)
T ss_pred EEecCCcceeeEccCcH------HHHhhhHHhcCCcCEEEECC-CCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEe
Confidence 56899999999998843 55666778899999999999 8889999999998888888766 457888887673
Q ss_pred CCCcccHHHHHHHHHcCCc-EEEEcccCCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc
Q 010547 173 PENAYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (507)
.......++++++.+.|+. ++|.|+...+.+ +.+..+.+.+..+++.+++.|+++.+|+|+.+......
T Consensus 96 lt~~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~--------- 166 (364)
T PLN02599 96 LTDNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIF--------- 166 (364)
T ss_pred cCCCCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCccccccc---------
Confidence 3333457888888889999 999986432211 22233468999999999999999999998754311000
Q ss_pred cccccccCCCChhHHHHHHHHHHH--HHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccc
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLT--VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~--l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~ 328 (507)
..+...+.+.++ +.+ .++.++|+.|+++. .+++.++.+++ + ++++++||||+.++.
T Consensus 167 ------------~~E~~~i~r~l~~~la~-------~~g~kI~i~HiSt~-~~ve~v~~ak~-~-~vtae~tpHhL~l~~ 224 (364)
T PLN02599 167 ------------DREKVFIDTILAPLVQK-------LPQLKIVMEHITTM-DAVEFVESCGD-G-NVAATVTPQHLLLNR 224 (364)
T ss_pred ------------ccHHHHHHHHHHHHHHh-------ccCCeEEEEecChH-HHHHHHHhccC-C-CEEEEecHHHHhcCH
Confidence 012233455553 334 34889999999998 99999998874 3 899999999999999
Q ss_pred cCCC--CCCCceeEcCCCCChhhHHHHHHHHhcCCe-eEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH
Q 010547 329 EEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405 (507)
Q Consensus 329 ~~~~--~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~-~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 405 (507)
+++. ..+..++++||+|...+++.+++++.+|.+ +.++|||+|+....+....| ..|+......++.+....
T Consensus 225 ~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~~g-----~~Gi~~~~~~l~~l~~~~ 299 (364)
T PLN02599 225 NALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCG-----CAGIYSAPVALSLYAKAF 299 (364)
T ss_pred HHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCCCC-----CCCcccHHHHHHHHHHHH
Confidence 9876 356779999999999999999999999996 89999999998766531111 123333333567655555
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCCC-CCCc
Q 010547 406 RKYGVTLEQLASWWSERPAKLAGQV-SKGA 434 (507)
Q Consensus 406 ~~~gls~~~al~~~T~n~A~~lgl~-~~G~ 434 (507)
.+.| ++++++++++.|||+.+|++ ++|+
T Consensus 300 ~~~g-~l~~l~~~~S~npA~~~gL~~~kg~ 328 (364)
T PLN02599 300 EEAG-ALDKLEAFTSFNGPDFYGLPRNTST 328 (364)
T ss_pred HhcC-CHHHHHHHHhHHHHHHhCCCCCCCe
Confidence 5556 99999999999999999994 5555
|
|
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=218.74 Aligned_cols=311 Identities=23% Similarity=0.252 Sum_probs=180.7
Q ss_pred CCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC----------CCC-------------ChhHHHH
Q 010547 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EWE-------------GFPSGTK 123 (507)
Q Consensus 67 dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~----------~~~-------------~~~~~~~ 123 (507)
||||++|+++...+ .+.++||++|++|+|||||+|+|++..... .++ .......
T Consensus 1 ~gkI~~i~~~~~~~---~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~ 77 (359)
T cd01309 1 DGKIVAVGAEITTP---ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFK 77 (359)
T ss_pred CCEEEEEcCCCCCC---CCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHH
Confidence 79999999876544 367999999999999999999999743111 010 1224566
Q ss_pred HHHhCCceEEEeCCCCCCCCCCCHH--------HHHHHHHHHhcCceeeEEEeccccC--------CCc-ccH---HHHH
Q 010547 124 AAAAGGITTLIDMPLNSDPSTISTE--------TLKLKVDAAEKRIYVDVGFWGGLVP--------ENA-YNA---SALE 183 (507)
Q Consensus 124 ~~l~~GvTt~~~~~~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~---~~~~ 183 (507)
.++++|||++...+ ++........ ..... .......+.+. .+... ..+ ... ..++
T Consensus 78 ~a~~~GvT~~~v~p-~~~~~~gg~~~~i~~~~~~~~~~--~~~~~~~~~~a--~g~~~~~~~~~~~~~p~trmg~~~~lr 152 (359)
T cd01309 78 RARAGGVTTVQVLP-GSANLIGGQGVVIKTDGGTIEDM--FIKAPAGLKMA--LGENPKRVYGGKGKEPATRMGVAALLR 152 (359)
T ss_pred HHHhcCceEEEecC-CCCCcccceEEEEECCCCCHHHh--cccCCceeEEe--cCCCCcccccccCCCccchHHHHHHHH
Confidence 78899999998776 2221110000 01111 11122222211 11100 001 000 1111
Q ss_pred HHHHcC---CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCC
Q 010547 184 ALLNAG---VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTR 260 (507)
Q Consensus 184 ~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (507)
+..... ...-..+... ...+...+..++.+++.++.. +++.+|+..
T Consensus 153 ~~~~~a~~y~~~~~~~~~~---~~~~~~~d~~l~~l~~~~~~~-~~v~vHa~~--------------------------- 201 (359)
T cd01309 153 DAFIKAQEYGRKYDLGKNA---KKDPPERDLKLEALLPVLKGE-IPVRIHAHR--------------------------- 201 (359)
T ss_pred HHHHHHHHHHHHhhhhhhc---ccCCCCCCccHHHHHHHHcCC-eeEEEEeCC---------------------------
Confidence 111000 0000000000 001112334456666655544 889999843
Q ss_pred ChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeE
Q 010547 261 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 340 (507)
Q Consensus 261 p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (507)
...+..++++.++. +.++.+.|+... .+.++.+++.|+.+.. +|....... .
T Consensus 202 -----~~~i~~~l~~~~e~-------g~~~~i~H~~~~---~~~~~~la~~gv~v~~--~P~~~~~~~--~--------- 253 (359)
T cd01309 202 -----ADDILTAIRIAKEF-------GIKITIEHGAEG---YKLADELAKHGIPVIY--GPTLTLPKK--V--------- 253 (359)
T ss_pred -----HHHHHHHHHHHHHc-------CCCEEEECchhH---HHHHHHHHHcCCCEEE--Ccccccccc--H---------
Confidence 22356777777765 667888898763 5566777778877654 443211000 0
Q ss_pred cCCCCChhhHHHHHHHHhcC-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHH
Q 010547 341 APPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 419 (507)
Q Consensus 341 ~p~~~~~~~~~~~~~~l~~G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~ 419 (507)
. . .......+.+++.+| +.++++||+....... +......+...+++.+++++++
T Consensus 254 ~-~--~~~~~~~~~~l~~aGGv~valgsD~~~~~~~~---------------------l~~~~~~a~~~gl~~~~al~~~ 309 (359)
T cd01309 254 E-E--VNDAIDTNAYLLKKGGVAFAISSDHPVLNIRN---------------------LNLEAAKAVKYGLSYEEALKAI 309 (359)
T ss_pred H-H--hhcchhhHHHHHHcCCceEEEECCCCCccchh---------------------HHHHHHHHHHcCCCHHHHHHHH
Confidence 0 0 011223456777887 9999999985322110 2222334556789999999999
Q ss_pred hhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEE
Q 010547 420 SERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490 (507)
Q Consensus 420 T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~ 490 (507)
|.|||++||+ +++|+|++|+.||||+||.++... ..+|..||++|++||
T Consensus 310 T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl~~----------------------~~~v~~v~i~G~~v~ 359 (359)
T cd01309 310 TINPAKILGIEDRVGSLEPGKDADLVVWNGDPLEP----------------------TSKPEQVYIDGRLVY 359 (359)
T ss_pred HHHHHHHhCCCCCcccCCCCCccCEEEECCCcccc----------------------cCcccEEEECCEEeC
Confidence 9999999999 667999999999999999763211 127999999999986
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=203.19 Aligned_cols=347 Identities=23% Similarity=0.348 Sum_probs=232.4
Q ss_pred CCcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCC-------CCCcEEecCCCEEecceeecccccCCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNS-------KTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~-------~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
....+++|.|+.|+|-.++.++||-|+||||..||+...+.-.. ..+++|.++|++++.|-||+|+|+..+
T Consensus 64 ~~~~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P-- 141 (568)
T COG0804 64 AGALDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP-- 141 (568)
T ss_pred cCcccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH--
Confidence 33568999999999999999999999999999999877654322 357889999999999999999998864
Q ss_pred CCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCC--------HHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHH
Q 010547 113 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS--------TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 184 (507)
Q Consensus 113 ~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (507)
+....++..|+||.... ++.|...+ .-.+.+.+++++ ..++++.+.+ ..+......+.+
T Consensus 142 -------qqi~~Al~sGiTtmiGG--GtGpa~Gt~aTT~TpG~w~i~rMl~a~d-~~p~N~g~lg---KGn~s~~~~L~E 208 (568)
T COG0804 142 -------QQIEEALASGITTMIGG--GTGPADGTNATTCTPGPWHIARMLQAAD-GLPMNIGFLG---KGNASNPAPLAE 208 (568)
T ss_pred -------HHHHHHHhcCcEEEecC--ccCCCCCcccccccCCHHHHHHHHHhhh-cCceeeEEee---cCCCCCchhHHH
Confidence 44688999999999976 33443221 334555555544 4567777643 444455667889
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhH
Q 010547 185 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264 (507)
Q Consensus 185 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (507)
..++|+.++|. ++.+..++..+...+..|.+++++|.+|.....
T Consensus 209 qi~aGa~GlKl-------HEDWG~TpaaI~~~L~VAD~~DvqVaiHtDTLN----------------------------- 252 (568)
T COG0804 209 QIEAGAIGLKL-------HEDWGATPAAIDTCLSVADEYDVQVAIHTDTLN----------------------------- 252 (568)
T ss_pred HHhhccceeEe-------ecccCCCHHHHHHHHhhhhhhceEEEEeecccc-----------------------------
Confidence 99999999999 666788999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCC----CCce
Q 010547 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRF 338 (507)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~----~~~~ 338 (507)
|...++..+..++ |..+|..|...+. -..+.++.+...++..+ .+.| .+.++.+.+... -...
T Consensus 253 EsGfvEdTi~A~~---------gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPs-STNP-T~PytvNT~~EhlDMlMVcH 321 (568)
T COG0804 253 ESGFVEDTIAAIK---------GRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPS-STNP-TRPYTVNTIDEHLDMLMVCH 321 (568)
T ss_pred cccchHhHHHHhc---------CceeEEeeccCCCCCCccHHHHHccCCCcCcC-CCCC-CCCcccccHHHhhhhhhhhc
Confidence 2334567777776 8889999987430 12345555444333221 1112 222333333221 1222
Q ss_pred eEcCCCCC------h-hhHHHH--HHHHh-cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh-
Q 010547 339 KCAPPIRD------A-ANKEKL--WEALM-DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK- 407 (507)
Q Consensus 339 ~~~p~~~~------~-~~~~~~--~~~l~-~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 407 (507)
..+|.+.. . -..+.+ -..|. .|....++||..+- ..+.......|..+.+
T Consensus 322 hL~p~ipeDvaFAeSRIR~eTIAAEdiLhDmGafSmisSDSQAM-------------------GRvGEvi~RtwQtA~km 382 (568)
T COG0804 322 HLDPRIPEDVAFAESRIRPETIAAEDILHDMGAFSMISSDSQAM-------------------GRVGEVITRTWQTADKM 382 (568)
T ss_pred cCCCCCcchhhhhhhccchhhhhHHHHHhhccceEEeccchHhh-------------------hccchhhhhHHHHHHHH
Confidence 22333211 0 011111 12222 38888999996532 1112222223333221
Q ss_pred ---cC-----------CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccC
Q 010547 408 ---YG-----------VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 472 (507)
Q Consensus 408 ---~g-----------ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (507)
.| +....-+...|.|||..-|+ +.+||+|+||.||||+|++ .|+..
T Consensus 383 K~qrG~L~~d~~~nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~P-----------aFFGv-------- 443 (568)
T COG0804 383 KKQRGALPEDAGGNDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDP-----------AFFGV-------- 443 (568)
T ss_pred HHhcCCCCCCCCCCccHHHhhhhhheecCHHHhcccchhccceeccceeeeeeech-----------hhcCC--------
Confidence 11 45667888999999999999 8899999999999999994 23322
Q ss_pred cEEeeEEEEEEECCEEEEe
Q 010547 473 RRLSGKVLATISRGNLVYK 491 (507)
Q Consensus 473 ~~~~~~V~~v~v~G~~v~~ 491 (507)
++..|+.+|-+.+.
T Consensus 444 -----KP~~vlkgG~ia~a 457 (568)
T COG0804 444 -----KPELVLKGGMIAWA 457 (568)
T ss_pred -----CcceEEecceeeee
Confidence 36788888887764
|
|
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=191.77 Aligned_cols=315 Identities=22% Similarity=0.264 Sum_probs=199.4
Q ss_pred CcceEEEEecEEECCCCc--eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCCh
Q 010547 41 PYNQYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGF 118 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~--~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~ 118 (507)
++.+++++|++++++..- ...+|.|.||||++++ ..+.+. +.++||+.|.+|.||+||.|+|.+.++....
T Consensus 2 mqfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~-d~~apa---~tq~Ida~Gc~VspG~iDlHvHvy~ggt~~~--- 74 (386)
T COG3964 2 MQFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPA---ETQIIDADGCIVSPGLIDLHVHVYYGGTEGG--- 74 (386)
T ss_pred CccceeeeCCeecccccccCccceeeeecCeEEecc-CcCCCh---hheEEccCccEeccCeeeeeeEEecCCCccC---
Confidence 467899999999998653 3578999999999999 444442 6899999999999999999999988654322
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh---cCceeeEEEeccccCCCc------ccHHHHHHHHHc-
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPENA------YNASALEALLNA- 188 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 188 (507)
....+.+..+||||++|.+ + ........+++...... .+..++++..+ +..+++ -....+.+..+.
T Consensus 75 v~pd~~ga~~GvTTvVDAG-S--aGaanf~gF~r~vie~Sr~RI~Aflnvs~~G-l~a~nE~~d~~nid~d~i~aa~reh 150 (386)
T COG3964 75 VRPDMYGAPNGVTTVVDAG-S--AGAANFDGFYRTVIEASRVRIKAFLNVSPPG-LTASNELYDPDNIDEDKIHAAFREH 150 (386)
T ss_pred cCHHHccccCCceEEEecC-C--cCccchhhHHHHhhcchhheeeeeeeccCcc-eeeehhhCChhhCCHHHHHHHHHhC
Confidence 1234556789999999996 2 22233444444433222 22334433322 222211 122334444332
Q ss_pred --CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHH
Q 010547 189 --GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (507)
Q Consensus 189 --g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (507)
-..|+|.-....... ...-.-+...++.|+..+.|+++|..++.. .
T Consensus 151 ~d~ivGlKvR~s~~~~g---~~GitPl~la~~ia~~~klPlmvHigePp~---------------------------~-- 198 (386)
T COG3964 151 RDVIVGLKVRVSTEDIG---EYGITPLTLALRIANDLKLPLMVHIGEPPV---------------------------L-- 198 (386)
T ss_pred cCcEEEEEEEeeecccc---ccCCchHHHHHHHHhhcCCceEEecCCCCc---------------------------c--
Confidence 245666533221111 112233566777788999999999854322 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCCh---------hHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCc
Q 010547 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---------SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 337 (507)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~---------~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (507)
..+.++.+.. | -.+.||... ......++.++++|+.+...+... .
T Consensus 199 --~dEvlerL~~--------G--DIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~a--------------s 252 (386)
T COG3964 199 --MDEVLERLRR--------G--DIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRA--------------S 252 (386)
T ss_pred --HHHHHHhccC--------C--ceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCcc--------------e
Confidence 1334444332 2 234555321 145667888888887655433221 1
Q ss_pred eeEcCCCCChhhHHHHHHHHhcCC-eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 010547 338 FKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 416 (507)
Q Consensus 338 ~~~~p~~~~~~~~~~~~~~l~~G~-~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al 416 (507)
+ ......+++.+|. ++.++||-.....- .+=-..+..++.+....|+++.+++
T Consensus 253 f----------sf~vAr~aia~GllP~~ISSDlh~~~~~----------------n~Pv~dla~~mSKllalgmpl~~Vi 306 (386)
T COG3964 253 F----------SFNVARRAIANGLLPDIISSDLHTITKL----------------NGPVYDLAWIMSKLLALGMPLTDVI 306 (386)
T ss_pred e----------eHHHHHHHHhcCCCcceeeccceeeeec----------------CchHHHHHHHHHHHHHcCCcHHHHH
Confidence 1 1224467788886 48899996544310 1111124555666677899999999
Q ss_pred HHHhhchhHHhCCCCCCccccCCCCcEEEEcCCC
Q 010547 417 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 450 (507)
Q Consensus 417 ~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~ 450 (507)
+++|.|||.+++++.+|+|++|..||+++|+..+
T Consensus 307 ~avT~npA~~i~l~~~gtLa~G~~aD~tvf~lk~ 340 (386)
T COG3964 307 NAVTHNPAVLIGLAEIGTLAPGAFADITVFKLKN 340 (386)
T ss_pred HHHhcCHHHHhCccccCccCCCcccceEEEEecc
Confidence 9999999999999889999999999999999765
|
|
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=220.13 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=114.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCC
Q 010547 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (507)
Q Consensus 204 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 283 (507)
+.+..+++++.++++.|++.|.++.+|+.+... +...++...+.....
T Consensus 288 g~~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~--------------------------------i~~~l~~~~~~~~~~ 335 (479)
T cd01300 288 GLLLISPEELEELVRAADEAGLQVAIHAIGDRA--------------------------------VDTVLDALEAALKDN 335 (479)
T ss_pred CCccCCHHHHHHHHHHHHHCCCCEEEEEecHHH--------------------------------HHHHHHHHHHHHHhc
Confidence 345678999999999999999999999954321 222222222211111
Q ss_pred CCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCee
Q 010547 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (507)
Q Consensus 284 ~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 363 (507)
+..+.+..+.|+... ..+.++.+++.|+.+ .+||++.....+..... ...+. ......++..+++.|+.+
T Consensus 336 g~~~~r~~i~H~~~~--~~~~~~~l~~~gv~~--~~~P~~~~~~~~~~~~~----~lg~~--~~~~~~p~~~~~~~Gv~v 405 (479)
T cd01300 336 PRADHRHRIEHAQLV--SPDDIPRFAKLGVIA--SVQPNHLYSDGDAAEDR----RLGEE--RAKRSYPFRSLLDAGVPV 405 (479)
T ss_pred CCCCCCceeeecccC--CHHHHHHHHHcCCce--EeCcccccCchHHHHHh----cccHH--HHhcCchHHHHHHCCCee
Confidence 112456889998873 356788888888655 44776654432211100 00000 011223567788899999
Q ss_pred EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCc
Q 010547 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHAD 442 (507)
Q Consensus 364 ~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~AD 442 (507)
++|||+.+..... |......+......... ....+.++|++++++++|.|||+++|+ +++|+|++||.||
T Consensus 406 ~lGSD~~~~~~~p-------~~~~~~av~~~~~~~~~--~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~AD 476 (479)
T cd01300 406 ALGSDAPVAPPDP-------LLGIWAAVTRKTPGGGV--LGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLAD 476 (479)
T ss_pred eccCCCCCCCCCH-------HHHHHHHheeeCCCCCC--CCCccccCCHHHHHHHHHHHHHHHhccccccccccCCcccc
Confidence 9999986442110 10000000000000000 000234689999999999999999999 7789999999999
Q ss_pred EEE
Q 010547 443 LVV 445 (507)
Q Consensus 443 lvv 445 (507)
|||
T Consensus 477 lvv 479 (479)
T cd01300 477 FVV 479 (479)
T ss_pred eeC
Confidence 986
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=204.75 Aligned_cols=282 Identities=21% Similarity=0.227 Sum_probs=184.8
Q ss_pred ecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec
Q 010547 90 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (507)
Q Consensus 90 D~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (507)
|++|++|+|||||+|+|+..+... .....+.++++||||+++.+ ...+.....+.+....+.. .+..+++....
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~~~~----~~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~~~~~~~~a-~~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESSMLT----PSEFAKAVLPHGTTTVIADP-HEIANVAGVDGIEFMLEDA-KKTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCCCCC----hHHHHHHHHCCCcEEEEeCC-CCCCcCCCHHHHHHHHHHH-hCCCceEEEeC
Confidence 789999999999999999876432 44567889999999999987 6667777788888777754 34455555444
Q ss_pred cccCC--------CcccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhh
Q 010547 170 GLVPE--------NAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 240 (507)
Q Consensus 170 ~~~~~--------~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~ 240 (507)
+.... ..-..++++++.+ .++.+++.++.+.. . ...++.+.+.++.+++++.++..|+.....
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~---v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~---- 146 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPG---V-IEGDDEMLAKIQAAKKAGKPVDGHAPGLSG---- 146 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCcc---c-cCCcHHHHHHHHHHHhCCCEEEEeCCCCCH----
Confidence 33111 1113677888776 48999998764431 1 346678999999999999999999944220
Q ss_pred hhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecc
Q 010547 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 320 (507)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~ 320 (507)
..+...+. . |.. ..|... ...+..+ ..++|..+.....
T Consensus 147 --------------------------~~L~a~l~----a-------Gi~--~dH~~~--~~eea~e-~l~~G~~i~i~~g 184 (422)
T cd01295 147 --------------------------EELNAYMA----A-------GIS--TDHEAM--TGEEALE-KLRLGMYVMLREG 184 (422)
T ss_pred --------------------------HHHHHHHH----c-------CCC--CCcCCC--cHHHHHH-HHHCCCEEEEECc
Confidence 11222222 1 211 135433 2222333 3367765543211
Q ss_pred cccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHh--cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHH
Q 010547 321 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM--DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~--~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 398 (507)
. .......+.+.+. .+..++++||....+.... .-.+
T Consensus 185 ~------------------------~~~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~~-----------------~g~~ 223 (422)
T cd01295 185 S------------------------IAKNLEALLPAITEKNFRRFMFCTDDVHPDDLLS-----------------EGHL 223 (422)
T ss_pred c------------------------cHhhHHHHHHhhhhccCCeEEEEcCCCCchhhhh-----------------cchH
Confidence 0 0111222333333 4789999999752221100 0013
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeE
Q 010547 399 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 478 (507)
Q Consensus 399 ~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
....+.+...+++++++++++|.|||+++|++++|+|++|+.|||+++|... .. +
T Consensus 224 ~~v~r~a~~~g~s~~eal~~aT~n~A~~~gl~~~G~i~~G~~AD~vv~~~~~-------------~~------------~ 278 (422)
T cd01295 224 DYIVRRAIEAGIPPEDAIQMATINPAECYGLHDLGAIAPGRIADIVILDDLE-------------NF------------N 278 (422)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCcccCCCCcCCEEEECCCC-------------CC------------c
Confidence 3334455667999999999999999999999668999999999999998321 11 6
Q ss_pred EEEEEECCEEEEecC
Q 010547 479 VLATISRGNLVYKEG 493 (507)
Q Consensus 479 V~~v~v~G~~v~~~g 493 (507)
|..||++|+.||+..
T Consensus 279 v~~v~~~G~~v~~r~ 293 (422)
T cd01295 279 ITTVLAKGIAVVERH 293 (422)
T ss_pred eEEEEECCeEEEEec
Confidence 899999999999653
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=172.38 Aligned_cols=264 Identities=22% Similarity=0.268 Sum_probs=168.9
Q ss_pred ecceeecccc-----cCCCCCCCCC---ChhHHHHHHHhCCceEEEeCCCCC-CCCC-CCHHHHHHHHHHHh-----cCc
Q 010547 97 MPGLIDVHAH-----LDDPGRTEWE---GFPSGTKAAAAGGITTLIDMPLNS-DPST-ISTETLKLKVDAAE-----KRI 161 (507)
Q Consensus 97 ~PGfID~H~H-----~~~~~~~~~~---~~~~~~~~~l~~GvTt~~~~~~~~-~p~~-~~~~~~~~~~~~~~-----~~~ 161 (507)
+||+||+|+- +...+...|. .+...-+..+.+||||+.+...-. .... ...+......+++. +..
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 6999999993 3332333332 233445678899999999864211 1222 24555555555443 334
Q ss_pred eeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCC-C-------------C-------------------CC
Q 010547 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F-------------P-------------------MT 208 (507)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-------------~-------------------~~ 208 (507)
.++...+.......+...+.+..+.+.+...+-.++.+...-+ . . ..
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 5667777777777788888899998887777777765532211 0 0 12
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCc
Q 010547 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (507)
Q Consensus 209 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~ 288 (507)
+.+.++++++.|+++|+++.+|+.... +.+....+. |.
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~-------------------------------~~v~~a~~~-----------Gv 198 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTP-------------------------------EHVAEAHEL-----------GV 198 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCh-------------------------------HHHHHHHHC-----------CC
Confidence 246678888888888888888884321 011222221 22
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCC
Q 010547 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 368 (507)
Q Consensus 289 ~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD 368 (507)
.+ ..|. ...+.++.+++.|+.+.... |. .+.. + .......+.++++.|+.++++||
T Consensus 199 ~~-~E~p----~t~e~a~~a~~~G~~vv~ga-pn-------~lrg-~----------s~~g~~~~~~ll~~Gv~~al~SD 254 (325)
T cd01306 199 VI-SEFP----TTLEAAKAARELGLQTLMGA-PN-------VVRG-G----------SHSGNVSARELAAHGLLDILSSD 254 (325)
T ss_pred ee-ccCC----CCHHHHHHHHHCCCEEEecC-cc-------cccC-c----------cccccHhHHHHHHCCCeEEEEcC
Confidence 22 1222 44556667777787665421 11 0000 0 11123456788899999999999
Q ss_pred CCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcC
Q 010547 369 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 448 (507)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~ 448 (507)
+.+... +...+......+++++++++++|.|||+++|++++|+|++|+.||||++|.
T Consensus 255 ~~p~sl-----------------------l~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d~G~I~~G~~ADlvvvd~ 311 (325)
T cd01306 255 YVPASL-----------------------LHAAFRLADLGGWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILVDD 311 (325)
T ss_pred CCcHhH-----------------------HHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEeC
Confidence 875421 333455566788999999999999999999996689999999999999997
Q ss_pred C
Q 010547 449 E 449 (507)
Q Consensus 449 ~ 449 (507)
+
T Consensus 312 ~ 312 (325)
T cd01306 312 M 312 (325)
T ss_pred C
Confidence 5
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=155.04 Aligned_cols=82 Identities=27% Similarity=0.387 Sum_probs=63.5
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe-eEEEEEEECCE
Q 010547 410 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS-GKVLATISRGN 487 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~v~v~G~ 487 (507)
+++.|+..+.-.+||+.||+ +++|.|.+|.+||+.|+|.++...=+.. -|+.+..+ ..-..|+.+|+
T Consensus 438 ~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~-----------dye~v~kaf~~A~ytlK~Ge 506 (575)
T COG1229 438 LTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSN-----------DYEKVEKAFRKAAYTLKGGE 506 (575)
T ss_pred ccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecChhhcCCcc-----------cHHHHHHHHhheeEEecCce
Confidence 88999999999999999999 7799999999999999998763221111 11111100 24678999999
Q ss_pred EEEecCcccCCCCCc
Q 010547 488 LVYKEGNHAPAACGS 502 (507)
Q Consensus 488 ~v~~~g~~~~~~~~~ 502 (507)
+|+++|+++....||
T Consensus 507 IvvkdGeiv~~p~gr 521 (575)
T COG1229 507 IVVKDGEIVAEPEGR 521 (575)
T ss_pred EEEecceEEecccCc
Confidence 999999999877776
|
|
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-19 Score=169.42 Aligned_cols=293 Identities=26% Similarity=0.310 Sum_probs=156.6
Q ss_pred ecCCCEEecceeecccc--cCCC--CCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeE
Q 010547 90 DYGEAVIMPGLIDVHAH--LDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (507)
Q Consensus 90 D~~g~~v~PGfID~H~H--~~~~--~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 165 (507)
|++|++|+|||||+|+| +... .....+........++.+|+|++++.+ . ............ ....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~-~-----~~~~~~~~~~~~-----~~~~ 69 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMP-G-----TNPEELNRARRR-----GAGY 69 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESS-S-----SSHHHHHHHHHH-----ESEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCC-C-----CCchhhHHHHhh-----cccc
Confidence 89999999999999999 2211 112223345667888999999999754 1 223333332222 1111
Q ss_pred EEeccccCCCcc---cHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcC-CcEEEecCCcccchhhh
Q 010547 166 GFWGGLVPENAY---NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEMEKGSERHV 241 (507)
Q Consensus 166 ~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~-~~v~~H~~~~~~~~~~~ 241 (507)
.... ...... ....+.........++.. . ......+.+.+..+.+...+ ..+..|+... ......
T Consensus 70 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (304)
T PF13147_consen 70 PGSG--AGPRGTTIEELEALVDLIAAEGVGFVA--A------YNGIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAI 138 (304)
T ss_dssp EEEC--ESCCHHHHHHHHHHHHHHHHTEEEEES--S------STHHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHH
T ss_pred cccc--ccccccchHHHHHHHHHHhhcCcceee--c------cccCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHH
Confidence 1111 111111 222333333333333322 0 11345567778888888888 4444444322 111111
Q ss_pred hcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccc
Q 010547 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 321 (507)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~ 321 (507)
.... ... .. . ..+.......+........ +..++....... .....+......++......
T Consensus 139 ~~~~-~~~----~~-~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 199 (304)
T PF13147_consen 139 AEGL-DAM----EH-I-LPHEVAEALHLAEALAQGA---------GPGLHCHVASDD-ATAEGVAIAHGFGLPPTPLH-- 199 (304)
T ss_dssp HHHH-HTT----HH-S-THHHHHHHHHHHHHHHHHH---------THCEEEEETSSH-HHHHHHHHHHHTTHEEEEEE--
T ss_pred Hhcc-cch----hh-h-hhhhHHHHHHHHHHhhhcc---------ccchhhhhhhhh-hhhHHHHHHHhhccccchHH--
Confidence 0000 000 00 0 0011111112222222222 334444444443 33222444445554433321
Q ss_pred ccccccccCCCCCCCceeEcCCCC--ChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHH
Q 010547 322 HYLAFSAEEIPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 399 (507)
.+ ..........+...|+++ .......+.+++++|++++++||+.+.... +....+.
T Consensus 200 -~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~ 258 (304)
T PF13147_consen 200 -LL---ARDAAAAGIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLH 258 (304)
T ss_dssp -HH---HHHHHHHGGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHH
T ss_pred -hh---HHHHHhcCceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccch
Confidence 00 000111155677888877 778888899999999999999998865321 1122255
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEE
Q 010547 400 VTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLV 444 (507)
Q Consensus 400 ~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlv 444 (507)
.....+...|+++++|++++|.|||++||+ +++|+|++||+||||
T Consensus 259 ~~~~~~~~~gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 259 EAMRLAVRAGLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp HHHHHHHHTSSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred hhhhHHhhcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 556667779999999999999999999999 899999999999997
|
... |
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.6e-18 Score=148.87 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=73.7
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC-----
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW----- 115 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~----- 115 (507)
...-+.|.|++|+-..++...++||+||||..-.+---.+.- ..+..|||.|+++.|||||...+.+.+...+.
T Consensus 10 ~~~llQFtNCrilR~g~l~~edlWVR~GRIldpe~vFFeErt-~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~ 88 (407)
T KOG3892|consen 10 GNRLLQFTNCRILRGGKLLREDLWVRGGRILDPEKVFFEERT-VADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDV 88 (407)
T ss_pred ccceeeeeeeEEeeCCceeehheeEeCCeecCcccccceecc-chhheeccCCeeecCceEEEEecCccccccccchhhh
Confidence 345578999999998889999999999999876654322211 25678999999999999999999988743322
Q ss_pred -CChhHHHHHHHhCCceEEEeCC
Q 010547 116 -EGFPSGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 116 -~~~~~~~~~~l~~GvTt~~~~~ 137 (507)
+.+...++..+++|+|.+...+
T Consensus 89 ~eGvAlVAr~ll~hGvtsf~Pt~ 111 (407)
T KOG3892|consen 89 GEGVALVARQLLSHGVTSFCPTL 111 (407)
T ss_pred hhhHHHHHHHHHhcCCCcCCCcc
Confidence 2234457888999999998654
|
|
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=168.88 Aligned_cols=293 Identities=23% Similarity=0.255 Sum_probs=142.3
Q ss_pred EEecceeecccccCCCCCC-------CCCChhHHHHHHHhCCceEEEeCCCCCCCCCC--CHHHHHHHHHHHhcCceeeE
Q 010547 95 VIMPGLIDVHAHLDDPGRT-------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKVDAAEKRIYVDV 165 (507)
Q Consensus 95 ~v~PGfID~H~H~~~~~~~-------~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~ 165 (507)
+|+|||||+|+|+..+... ..+.+....+.++++||||+++++ .+.+... .............. .....
T Consensus 1 ~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 78 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQGGLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTP-HTSPNPDIELRNEIMEGLAAAPK-IEPAM 78 (333)
T ss_dssp EEEE-EEEEEEEGGGTTHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEE-ESSHCHHHHHHHHHHHHHHHHHH-HEEEE
T ss_pred CEEcChhHHhhCcCCcCccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCc-ccCCccccccccccccccccchh-hhccc
Confidence 6899999999999988666 344566778899999999999985 2333322 01111121221111 11111
Q ss_pred EEe----ccc----cCCCcc---c-------HHHHHHHHHcCCc--EEEEcccCCCCCCCCCCCHHHHHHHHHHHHh---
Q 010547 166 GFW----GGL----VPENAY---N-------ASALEALLNAGVL--GLKSFMCPSGINDFPMTNASHIKEGLSVLAR--- 222 (507)
Q Consensus 166 ~~~----~~~----~~~~~~---~-------~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~--- 222 (507)
..+ .+. ...... . .+.++.....+.. .+...............+.+.+...++.+++
T Consensus 79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (333)
T PF01979_consen 79 TLLGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPYTVSDEELREAVELAKEFLA 158 (333)
T ss_dssp EEEEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccccchhhhhhhHHhhhhhHHH
Confidence 111 000 000000 0 1112222222211 1111110001123346788889999999988
Q ss_pred --c-CCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh
Q 010547 223 --Y-KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299 (507)
Q Consensus 223 --~-~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~ 299 (507)
. +.++.+|..+.......+ ..+. .....+.+....-+ .... .+....+.|+...+
T Consensus 159 ~~~~~~~~~~h~~~~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~-~~~~-----~~~~~~~~h~~~~~ 216 (333)
T PF01979_consen 159 AEKLGIPVHIHVAEGTGEVEAM-------------THLY---GMSPIEALDHLGLL-EEAI-----DDGVDLIAHGTHLS 216 (333)
T ss_dssp HHHHTHEEEEEESSSHHHHCCC-------------HHHH---SHHHHHHHHHHHSC-HHHH-----HHHCEEEEEHTTSE
T ss_pred HHhhcccceeeeccCcccceeE-------------eeee---eccchhhhccchhh-hhhc-----ccccceeeccccCC
Confidence 3 999999986644310000 0000 00111111111100 0000 02335566766531
Q ss_pred HHHHHHHHHHhCCCCEEEecccccccc---cccCCCCCCCceeEcCCCCChhhHHHHHHHHhc-CCeeEEeCCCCCCChh
Q 010547 300 SSLDLLMEAKTNGDSITVETCPHYLAF---SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-GHIDMLSSDHSPTVPE 375 (507)
Q Consensus 300 ~~~~~i~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~-G~~~~lgtD~~~~~~~ 375 (507)
.+.++.+++.+..+.. ||..... .............. ..........+.+.+.+ |+. +|||+.. .
T Consensus 217 --~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~g~~--lgtDg~~---~ 285 (333)
T PF01979_consen 217 --DEEIELLKETGIGIIH--CPISNDSAPHKPGKAIMMDGTAEG--IYGLGSGGAPLFRMLDKMGVN--LGTDGVA---E 285 (333)
T ss_dssp --HHHHHHHHHHTHEEEE--EHHHHHHHHHHTTHHSETTBSBTS--BSCTTHHHHHHHHHHHCTTHE--ETTCTTC---H
T ss_pred --HHHhhhhhccCCcccc--ccchhhhhccccccccccchhccc--cccccccccchhhhhhhcccc--ccccccc---c
Confidence 2234444444544432 2211111 00000000000000 00122334455666666 777 9999432 1
Q ss_pred hhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEc
Q 010547 376 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWE 447 (507)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld 447 (507)
.++...+.+++++++++++|.|||++||+ +++|+|++||+|||||||
T Consensus 286 -------------------------~l~~~~~~~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 286 -------------------------ELKLFVRLGISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp -------------------------HHHHHHHHHSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred -------------------------cccccccccccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 12233344499999999999999999999 888999999999999997
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=149.85 Aligned_cols=246 Identities=22% Similarity=0.219 Sum_probs=130.8
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc-CceeeEEEec------cccCCCcccHHH-HHH--HHH-cCCc
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWG------GLVPENAYNASA-LEA--LLN-AGVL 191 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~-~~~--~~~-~g~~ 191 (507)
..+.+.|+|++.+.. .......+.+..+.+.... ...+++..+. -+..+....... +.. ..+ .|.
T Consensus 137 ~~~~a~GiTt~~d~~---~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~- 212 (404)
T PF07969_consen 137 MAAGAYGITTVLDYG---GGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA- 212 (404)
T ss_dssp HHHCHTCEEEETTCE---CCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS-
T ss_pred HHhcCCCeEEecCCc---cccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCcccc-
Confidence 345689999999774 1223344555555444443 3233333221 122332222222 222 112 222
Q ss_pred EEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHH
Q 010547 192 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271 (507)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 271 (507)
.... .+.+..+++.+.++++.+.+.|.++.+|+.. ..++..
T Consensus 213 ~~~~-------~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~g--------------------------------d~a~~~ 253 (404)
T PF07969_consen 213 PVHI-------SGLPSFDPEELEELVRAAREAGLQVAVHAIG--------------------------------DRAIDE 253 (404)
T ss_dssp EEEE-------TC--SSSHHHHHHHHHHHHHCT-EEEEEEES--------------------------------HHHHHH
T ss_pred cccc-------cccccccchhHHHHHHHHHhcCCeeEEEEcC--------------------------------CchHHh
Confidence 2222 4456778888999999999999999999932 334556
Q ss_pred HHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHH
Q 010547 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 351 (507)
Q Consensus 272 ~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 351 (507)
.++...+. .....+.|+.. ...+.++.+++.++.... .|+++........ ....... ......
T Consensus 254 ~l~a~~~~-------~~~~~i~h~~~--~~~~~~~~~~~l~~~~~~--~p~~~~~~~~~~~--~~~~~~~----~~~~~~ 316 (404)
T PF07969_consen 254 ALDAIEAA-------RARGRIEHAEL--IDPDDIERMAELGVTASV--QPHFLFSWGGEWY--EERLGPE----RARRIY 316 (404)
T ss_dssp HHHHHHHH-------TCCHEEEEHCB--CCHHHHHHHHHHTTEEEE--CCTHHHHETEETH--HHHHHHH----CGGGBT
T ss_pred HHHHHHhh-------cccceeecccc--CCHHHHHHHHHhCCcccc--ChhHhhhccchhh--hhhhhhH----HHHHHh
Confidence 66666654 22125666654 344456666666665443 4433322210000 0000000 011124
Q ss_pred HHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHH---------hcCCCHHHHHHHHhh
Q 010547 352 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGR---------KYGVTLEQLASWWSE 421 (507)
Q Consensus 352 ~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~---------~~gls~~~al~~~T~ 421 (507)
++..++++|+.++++||+....... +......... ... ...+|++||++++|.
T Consensus 317 ~~~~~~~~Gv~v~~gsD~p~~~~~P-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~ 379 (404)
T PF07969_consen 317 PIRSLLDAGVRVALGSDAPVSPPNP-----------------FRGIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTS 379 (404)
T ss_dssp HHHHHHHCTTEEEE--TTTTSSCCH-----------------HHHHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTH
T ss_pred HHHHHHhccCceecCcCCcccccCc-----------------chhhhhhhccccccccccccccccccCCHHHHHHHHhH
Confidence 5678899999999999976422111 0000111111 111 267999999999999
Q ss_pred chhHHhCC-CCCCccccCCCCcEEE
Q 010547 422 RPAKLAGQ-VSKGAIAIGNHADLVV 445 (507)
Q Consensus 422 n~A~~lgl-~~~G~I~~G~~ADlvv 445 (507)
|||+++|+ +++|+|++||.|||||
T Consensus 380 ~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 380 NPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp HHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred HHHHHcCCCCCcceECCCCCcCeEC
Confidence 99999999 5559999999999997
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-15 Score=109.16 Aligned_cols=68 Identities=35% Similarity=0.658 Sum_probs=49.3
Q ss_pred EEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEE
Q 010547 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 133 (507)
Q Consensus 63 I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~ 133 (507)
|+|+||||++|++....+. ++.++||++|++|+|||||+|+|+....... .........++++||||+
T Consensus 1 V~I~~g~I~~v~~~~~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~-~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPA--DAAEVIDAKGKYVMPGFIDMHTHLGEPGWQS-LDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTS--TCCEEEEETTCEEEE-EEEEEE-TTTTCEGG-CTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCC--CCCEEEECCCCEEeCCeEeeeeccccccccc-cchhhHHHHHHCcceeeC
Confidence 7899999999965544432 3567899999999999999999988322211 112456677789999996
|
... |
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=128.14 Aligned_cols=246 Identities=25% Similarity=0.290 Sum_probs=141.1
Q ss_pred eeecccccCCCCCCC------------------CCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCc
Q 010547 100 LIDVHAHLDDPGRTE------------------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 161 (507)
Q Consensus 100 fID~H~H~~~~~~~~------------------~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 161 (507)
|||+|+|+....... ..........++++||||++++. ...+.....+......+.+....
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STPPPTTTKAAIEAVAEAARASA 79 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeE-eecCccccchHHHHHHHHHHHhc
Confidence 799999997643221 11244556788999999999986 33333322234444444443321
Q ss_pred eeeEEEeccccCCCc--------ccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 162 YVDVGFWGGLVPENA--------YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 162 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
.+......+...... ...+++.+..+.|+.+++.+..... ...+++.++++++.+++++.++.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~i~~H~~~ 155 (275)
T cd01292 80 GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTA----TGLSDESLRRVLEEARKLGLPVVIHAGE 155 (275)
T ss_pred CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCC----CCCCcHHHHHHHHHHHHcCCeEEEeeCC
Confidence 233333222322211 1223344444457888887432211 1147899999999999999999999965
Q ss_pred cccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCC
Q 010547 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313 (507)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~ 313 (507)
.... ...+..+++.... +.++.+.|+... ..+.++.+++.|+
T Consensus 156 ~~~~----------------------------~~~~~~~~~~~~~--------~~~~~~~H~~~~--~~~~~~~~~~~g~ 197 (275)
T cd01292 156 LPDP----------------------------TRALEDLVALLRL--------GGRVVIGHVSHL--DPELLELLKEAGV 197 (275)
T ss_pred cccC----------------------------ccCHHHHHHHHhc--------CCCEEEECCccC--CHHHHHHHHHcCC
Confidence 4320 0112344443331 456889999873 3445666666675
Q ss_pred CEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCch
Q 010547 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393 (507)
Q Consensus 314 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (507)
.+ .+||+...... +.......+.++++.|.++++|||+.+.....+
T Consensus 198 ~~--~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~---------------- 243 (275)
T cd01292 198 SL--EVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTD---------------- 243 (275)
T ss_pred eE--EECCccccccc----------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCCCC----------------
Confidence 54 44665433221 012223355677888999999999875421110
Q ss_pred hhhHHHHHHHH---HHhcCCCHHHHHHHHhhchhHH
Q 010547 394 LQFVLPVTWSY---GRKYGVTLEQLASWWSERPAKL 426 (507)
Q Consensus 394 ~~~~l~~~~~~---~~~~gls~~~al~~~T~n~A~~ 426 (507)
+...++. ....+++.+++++++|.|||++
T Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 244 ----LLALLRLLLKVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred ----HHHHHHHHHHHHhcCCCHHHHHHHHhccccCC
Confidence 1112222 2233479999999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=125.73 Aligned_cols=133 Identities=16% Similarity=0.157 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEE
Q 010547 213 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 292 (507)
Q Consensus 213 l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~ 292 (507)
++++++.|+++|.++.+|+.+... +. ....++.+.++ +... +
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~----------~~----------------g~~~i~~~~~~-----------~~~~-i 168 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRE----------SV----------------GMTDIERALDL-----------EPDL-L 168 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCC----------CC----------------CchhHHHHHhC-----------CCCE-E
Confidence 999999999999999999854321 00 00012333332 1112 4
Q ss_pred EecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC
Q 010547 293 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (507)
Q Consensus 293 ~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~ 372 (507)
.|+... +.+.++.+++.|+.+.. ||..-... + ....++.++++.|+++++|||..+.
T Consensus 169 ~H~~~l--~~~~~~~la~~g~~v~~--~P~sn~~l-------~------------~g~~p~~~l~~~Gv~v~lGtD~~~~ 225 (263)
T cd01305 169 VHGTHL--TDEDLELVRENGVPVVL--CPRSNLYF-------G------------VGIPPVAELLKLGIKVLLGTDNVMV 225 (263)
T ss_pred EEcCCC--CHHHHHHHHHcCCcEEE--ChhhHHHh-------C------------CCCCCHHHHHHCCCcEEEECCCCcc
Confidence 566552 23468888888887655 55311000 0 0112356888899999999997543
Q ss_pred ChhhhccccCCccccCCCCchhhhHHHHHHHHHHhc----CCCHHHHHHHHhhchhHH
Q 010547 373 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY----GVTLEQLASWWSERPAKL 426 (507)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----gls~~~al~~~T~n~A~~ 426 (507)
+... . +..+....... .++++++++++|.|+|+.
T Consensus 226 ~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 226 NEPD----------------M----WAEMEFLAKYSRLQGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred CCCC----------------H----HHHHHHHHHHhcccccCCHHHHHHHHhhccccC
Confidence 2111 1 11111111122 459999999999999973
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=118.36 Aligned_cols=244 Identities=11% Similarity=0.025 Sum_probs=137.8
Q ss_pred HHHHHHhCCceEEEeCCCCCCC--CCCCHHHHHHHHHHHhcCceeeEEEe--ccccCCCcccHHHHHHHHHcCCcEEEEc
Q 010547 121 GTKAAAAGGITTLIDMPLNSDP--STISTETLKLKVDAAEKRIYVDVGFW--GGLVPENAYNASALEALLNAGVLGLKSF 196 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 196 (507)
..+.++++|||.++.+. ...| .....+.+.+..+.......+.+..+ -++. .+...+.+.+..+. +.-+...
T Consensus 74 ~l~~~~~~Gtt~iRtHv-dvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~--~~~~~~l~~~al~~-advvGGi 149 (329)
T PRK06886 74 AIELMISQGVTAFGTFV-DIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVI--EPTAKKWFDIGSEM-VDMIGGL 149 (329)
T ss_pred HHHHHHHcCcccEeeee-ccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhcc--CccHHHHHHHHHHh-CCEEeCc
Confidence 34566789999999887 4455 34557777777777777766666432 2232 23334555554443 3333332
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHH
Q 010547 197 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 276 (507)
. +.. ......+.+.+..+++.|+++|.++.+|+.+... + ....++...+..
T Consensus 150 P-~~~-~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~------------------------~---~~~~le~l~~~~ 200 (329)
T PRK06886 150 P-YRD-ELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNT------------------------P---KEKETEQLCDKT 200 (329)
T ss_pred c-CCc-CCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCc------------------------h---hHHHHHHHHHHH
Confidence 1 100 1112356789999999999999999999965432 1 111233333333
Q ss_pred HhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCCEEEeccccc-ccccccCCCCCCCceeEcCCCCChhhH
Q 010547 277 KDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANK 350 (507)
Q Consensus 277 ~~~~~~~~~~g~~~~~~h~~~~-----~~~~~~i~~~~~~g~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~ 350 (507)
.+.+. ..++.+.|+..- ....+.++.+++.|+.+.. ||.. +.+.. .....| .....
T Consensus 201 ~~~Gl-----~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~--~P~snl~l~~--------~~~~~p---~~rGv 262 (329)
T PRK06886 201 IEHGM-----QGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIA--CPMAWIDSNR--------KEDLMP---FHNAL 262 (329)
T ss_pred HHcCC-----CCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEE--Cchhhhhhcc--------ccccCc---CCCCC
Confidence 33322 236888888642 1344567888888887655 5532 11110 000001 11123
Q ss_pred HHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 351 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 351 ~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
.++.++++.|+.+++|||+...... ..+..+.++... ... . ...-.++.++++++|.|||++||+
T Consensus 263 ~pv~eL~~aGV~V~lGtDnv~D~~~-----------p~g~~Dmle~~~-l~~-~-~~~~~~~~~~l~maT~~gAraLgl 327 (329)
T PRK06886 263 TPADEMIPEGITVALGTDNICDYMV-----------PLCEGDMWQELS-LLA-A-GCRFYDLDEMVNIASINGRKVLGL 327 (329)
T ss_pred CCHHHHHHCCCeEEEecCCCcccCC-----------CCCCCCHHHHHH-HHH-H-HcCCCCHHHHHHHHhhhHHHHhCC
Confidence 3567888899999999997632111 111112222111 111 1 112247899999999999999997
|
|
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-10 Score=101.15 Aligned_cols=293 Identities=21% Similarity=0.264 Sum_probs=189.5
Q ss_pred EEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc--CceeeEEEecccc
Q 010547 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLV 172 (507)
Q Consensus 95 ~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 172 (507)
+-+..-.|+|.|+.++. +....-...+.++...+-+| +-.|...+.+...++.+.+-. ...-++-....+.
T Consensus 5 l~i~rPdDwHlHLRdg~------mL~~V~p~ts~~f~rAiIMP-NL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlY 77 (344)
T COG0418 5 LTIRRPDDWHLHLRDGA------MLKAVVPYTSRGFGRAIIMP-NLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLY 77 (344)
T ss_pred eeccCccceeEEecCcc------HHHHhhhhhhhhcceEEEcC-CCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEE
Confidence 34566789999998753 34444445555888888888 667776665544444433321 1111111111222
Q ss_pred CCCcccHHHHHHHHHcC-CcEEEEccc-CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc
Q 010547 173 PENAYNASALEALLNAG-VLGLKSFMC-PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (507)
-.+....+++++..+.| ..++|.|.. ..........+-+.+...++..++.|+++.+|-|..+..-+.+.
T Consensus 78 Ltd~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifd-------- 149 (344)
T COG0418 78 LTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFD-------- 149 (344)
T ss_pred ecCCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccchh--------
Confidence 23334567888888887 789999841 11111222345778889999999999999999987654211111
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccC
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~ 330 (507)
.|..-+...++-+.+. .+..++.+.|++++ +..+.++.. +.++...+.+||+.++.++
T Consensus 150 -------------rE~~Fi~~vl~pl~~~-----fP~LKIV~EHiTT~-dav~~v~~~---~~nlaATIT~hHL~~nrnd 207 (344)
T COG0418 150 -------------REAAFIESVLEPLRQR-----FPKLKIVLEHITTK-DAVEYVKDA---NNNLAATITPHHLLLNRND 207 (344)
T ss_pred -------------hHHHHHHHHHHHHHhh-----CCcceEEEEEeccH-HHHHHHHhc---CcceeeEeehhheeeehhh
Confidence 1223355555555554 45889999999998 777777765 4446777789999999999
Q ss_pred CCCCC--CceeEcCCCCChhhHHHHHHHHhcCC-eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh
Q 010547 331 IPDGD--TRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 407 (507)
Q Consensus 331 ~~~~~--~~~~~~p~~~~~~~~~~~~~~l~~G~-~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 407 (507)
+..++ ..+.+.|.+....++..+.++...|- ++.+|||.+|+....+...+|. .|+-.....++.+.+...+
T Consensus 208 ~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~cgc-----AG~fsap~al~~~AevFE~ 282 (344)
T COG0418 208 MLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESACGC-----AGIFSAPFALPLYAEVFEE 282 (344)
T ss_pred hhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCccccccccccc-----ccccccHhHHHHHHHHHHH
Confidence 88665 66777888899999999988888775 5899999999887766543321 1222222233433333333
Q ss_pred cCCCHHHHHHHHhhchhHHhCCC
Q 010547 408 YGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 408 ~gls~~~al~~~T~n~A~~lgl~ 430 (507)
.+ .++..=..++.||.+..|++
T Consensus 283 ~n-aL~~LeaF~S~nGp~fY~lp 304 (344)
T COG0418 283 EN-ALDNLEAFASDNGPKFYGLP 304 (344)
T ss_pred hc-HHHHHHHHHhhcCcceeccc
Confidence 33 45555567899999999994
|
|
| >KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-08 Score=85.93 Aligned_cols=290 Identities=19% Similarity=0.232 Sum_probs=179.9
Q ss_pred EecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC
Q 010547 96 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 175 (507)
Q Consensus 96 v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (507)
-+|+.-|+|.|+.++.... ...-....+||.....+| +-.|...+.+..-.+.+.+.. ......+...+.-..
T Consensus 6 ~i~~~~DmHvHlR~g~ml~-----aVvP~~a~ggvs~AyvMP-NL~PPiTt~da~i~YkK~i~k-L~skttfLMslYLs~ 78 (344)
T KOG2902|consen 6 TITQPDDMHVHLRDGDMLH-----AVVPHSASGGVSRAYVMP-NLKPPITTTDAAIIYKKFIMK-LPSKTTFLMSLYLSD 78 (344)
T ss_pred ecCCccceeEEeccCCeee-----eeccccccCceeEEEEcC-CCCCCcchHHHHHHHHHHHHh-cCccceeEEEEeecC
Confidence 4688999999998864431 122334568899999998 777877776655555444432 111111122233444
Q ss_pred cccHHHHHHHHHc-CCcEEEEccc---CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcc
Q 010547 176 AYNASALEALLNA-GVLGLKSFMC---PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (507)
Q Consensus 176 ~~~~~~~~~~~~~-g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (507)
....+++.+..+. ++.+++.|.. ..+.++. ...-+.++-.++...+.++++.+|-|.+..+...+
T Consensus 79 ~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV-~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~V---------- 147 (344)
T KOG2902|consen 79 KTTPEEIREAAESGVIRGVKLYPAGATTNSQDGV-TDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHV---------- 147 (344)
T ss_pred CCCHHHHHHHHHhCceeeEEeccCcccccccccc-cccchhhhHHHHHHHHcCceEEecCCCCCccCCce----------
Confidence 5567788887775 6789999841 1111111 11245677788889999999999987644322111
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCC
Q 010547 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331 (507)
Q Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~ 331 (507)
-..|..-+..++++-.+ .+..++...||++. +.++.++.+. +..+...+.+||+.++.+++
T Consensus 148 ----------f~aE~~Flptll~Lhqr------fP~LKivlEHcTt~-dAv~~ve~a~--~~sVaaTvTahHL~Lt~~dw 208 (344)
T KOG2902|consen 148 ----------FDAEKIFLPTLLQLHQR------FPQLKIVLEHCTTM-DAVNFVESAK--EGSVAATVTAHHLLLTRNDW 208 (344)
T ss_pred ----------ecchhhhHHHHHHHHHh------CccceeHHHhcccH-HHHHHHHhhc--CCceeeEeehheeEEehhhh
Confidence 01233345556665554 35888999999998 8888888754 44566677899999999886
Q ss_pred CCCCCceeEcCCCCChhhHHHHHHHHhcCCe-eEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCC
Q 010547 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 410 (507)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~-~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gl 410 (507)
+. +..--+-|....+.+++.+.++.-.|-+ .-+|||.+|.....+...++. .|+......++.+.+...+.|
T Consensus 209 qg-~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~~~~c-----AGvysqpfA~sy~A~VFde~g- 281 (344)
T KOG2902|consen 209 QG-QPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKESSCGC-----AGVYSQPFALSYYAKVFDEAG- 281 (344)
T ss_pred cC-CCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccccCCCc-----ceeecccchHHHHHHHHhhhc-
Confidence 54 4444555667778888888888887754 789999999877766533221 122222222333333333433
Q ss_pred CHHHHHHHHhhchhHHhCC
Q 010547 411 TLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lgl 429 (507)
.++.+-..++.+|-...++
T Consensus 282 aLd~Lk~F~s~fG~~FY~~ 300 (344)
T KOG2902|consen 282 ALDKLKAFTSFFGPDFYGL 300 (344)
T ss_pred hHHHHhhhHhhcCcceecc
Confidence 2334444566777788887
|
|
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-07 Score=84.70 Aligned_cols=241 Identities=20% Similarity=0.209 Sum_probs=126.5
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcc--
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY-- 177 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 177 (507)
|||+|+|+...... .+.....+.+.+.|+++++... +. .+......+.+... ..+....|+.+....
T Consensus 1 ~~D~H~H~~~~~~~--~~~~~~l~~~~~~gv~~~v~~~--~~-----~~~~~~~~~la~~~--~~i~~~~G~hP~~~~~~ 69 (251)
T cd01310 1 LIDTHCHLDFPQFD--ADRDDVLARAREAGVIKIIVVG--TD-----LKSSKRALELAKKY--DNVYAAVGLHPHDADEH 69 (251)
T ss_pred CEEeeeCCCchhhc--cCHHHHHHHHHHcCCCEEEEeC--CC-----HHHHHHHHHHHHhC--CCeEEEEeeCcchhhcC
Confidence 69999999765422 2356667778899999999774 11 12333333333322 222222334433221
Q ss_pred ---cHHHHHHHHH-cCCcEEEEc-ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 178 ---NASALEALLN-AGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 178 ---~~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
..+++++..+ .+..+++.. +.............+.++.+++.|+++++++.+|+...
T Consensus 70 ~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~------------------ 131 (251)
T cd01310 70 VDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA------------------ 131 (251)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc------------------
Confidence 2445555543 244555321 11100000001234668889999999999999998421
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~ 332 (507)
...+++++++.+ .....+.|... ...+.++.+.+.|+.+...... . .
T Consensus 132 ----------------~~~~~~l~~~~~------~~~~~i~H~~~--~~~~~~~~~~~~g~~~~~~~~~--~-~------ 178 (251)
T cd01310 132 ----------------HEDVLEILKEYG------PPKRGVFHCFS--GSAEEAKELLDLGFYISISGIV--T-F------ 178 (251)
T ss_pred ----------------hHHHHHHHHhcC------CCCCEEEEccC--CCHHHHHHHHHcCCEEEeeeee--c-c------
Confidence 134566666541 12334445554 2235666666677665543211 0 0
Q ss_pred CCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 010547 333 DGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 409 (507)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g 409 (507)
... ..+.+.+..+ -.+.++||+.-..... + .++ .+....+....... ...|
T Consensus 179 ------------~~~---~~~~~~~~~~~~dril~~TD~p~~~~~~-------~---~~~-~~~~~~~~~~~~~la~~~g 232 (251)
T cd01310 179 ------------KNA---NELREVVKEIPLERLLLETDSPYLAPVP-------F---RGK-RNEPAYVKHVAEKIAELKG 232 (251)
T ss_pred ------------CCC---HHHHHHHHhCChHHEEEcccCCCCCCCC-------C---CCC-CCCChhHHHHHHHHHHHHC
Confidence 011 1122333333 3578999974221110 0 001 11222244444443 4589
Q ss_pred CCHHHHHHHHhhchhHHhC
Q 010547 410 VTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lg 428 (507)
++.+++.+..+.|++++||
T Consensus 233 l~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 233 ISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred cCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999986
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-07 Score=85.75 Aligned_cols=238 Identities=20% Similarity=0.251 Sum_probs=124.8
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc---
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 176 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (507)
|||+|+|+...... .+.....+.+.+.|+++++... +. ........+..+... .+....|+.+...
T Consensus 1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~--~~-----~~~~~~~~~~~~~~~--~i~~~~GihP~~~~~~ 69 (252)
T TIGR00010 1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVG--TD-----LEDFLRALELAEKYP--NVYAAVGVHPLDVDDD 69 (252)
T ss_pred CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEec--CC-----HHHHHHHHHHHHHCC--CEEEEEEeCcchhhcC
Confidence 69999998754322 2467778888899999999664 11 233333333333221 3333333433221
Q ss_pred --ccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCC-----CHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcC
Q 010547 177 --YNASALEALLN-AGVLGLKSFMCPSGINDFPMT-----NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 248 (507)
Q Consensus 177 --~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~ 248 (507)
...+++++..+ .++.+++.. +. +..+.. ..+.+.+.++.|++++++|.+|+....
T Consensus 70 ~~~~~~~l~~~l~~~~~~~iGEi-Gl---d~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~------------- 132 (252)
T TIGR00010 70 TKEDIKELERLAAHPKVVAIGET-GL---DYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAE------------- 132 (252)
T ss_pred CHHHHHHHHHHccCCCEEEEEec-cc---CcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCcc-------------
Confidence 12234444432 234455442 11 111111 236788889999999999999994321
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccc
Q 010547 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (507)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~ 328 (507)
..+++++++.+ .....+.|... ...+.+.+..+.|+-+...... .+
T Consensus 133 ---------------------~~~~~~l~~~~------~~~~~i~H~~~--~~~~~~~~~~~~g~~~~~~~~~---~~-- 178 (252)
T TIGR00010 133 ---------------------EDVLDILREEK------PKVGGVLHCFT--GDAELAKKLLDLGFYISISGIV---TF-- 178 (252)
T ss_pred ---------------------HHHHHHHHhcC------CCCCEEEEccC--CCHHHHHHHHHCCCeEeeceeE---ec--
Confidence 23445554431 11233446654 4556777777777665543110 00
Q ss_pred cCCCCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH-HHH
Q 010547 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYG 405 (507)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 405 (507)
+.. ..+.+.++.. -.+.++||........ +. +.... ...+.... ...
T Consensus 179 ----------------~~~---~~~~~~i~~~~~dril~~TD~p~~~~~~-------~~---~~~~~-p~~i~~~~~~~a 228 (252)
T TIGR00010 179 ----------------KNA---KSLREVVRKIPLERLLVETDSPYLAPVP-------YR---GKRNE-PAFVRYTVEAIA 228 (252)
T ss_pred ----------------CCc---HHHHHHHHhCCHHHeEecccCCCCCCCC-------CC---CCCCC-ChhHHHHHHHHH
Confidence 011 1223333332 4678999975221100 00 00011 01122212 223
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCC
Q 010547 406 RKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 406 ~~~gls~~~al~~~T~n~A~~lgl 429 (507)
...|++++++.++++.|++++|++
T Consensus 229 ~~~g~~~~~~~~~~~~N~~~~~~~ 252 (252)
T TIGR00010 229 EIKGMDVEELAQITTKNAKRLFGL 252 (252)
T ss_pred HHhCcCHHHHHHHHHHHHHHHhCc
Confidence 345999999999999999999975
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-06 Score=76.37 Aligned_cols=246 Identities=16% Similarity=0.163 Sum_probs=132.1
Q ss_pred eeecccccCCCCCC-CCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc--CceeeEEEeccccCCCc
Q 010547 100 LIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPENA 176 (507)
Q Consensus 100 fID~H~H~~~~~~~-~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 176 (507)
+||+|+|+...... ..++.......+.+.||..++..+ ...+......+.+.. .....++.|...... .
T Consensus 3 ~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~-~ 74 (265)
T PRK10812 3 LVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVA-------TTLPGYRHMRDLVGERDNVVFSCGVHPLNQDE-P 74 (265)
T ss_pred eEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeC-------CCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCC-h
Confidence 79999999743221 123567778888899999888553 234555555544443 233333433322211 2
Q ss_pred ccHHHHHHHHHc-CCcEEEEc-ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccc
Q 010547 177 YNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (507)
Q Consensus 177 ~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 254 (507)
...+.+.++... .+.+++-. +.+...........+.+++.++.|+++++|+.+|+....
T Consensus 75 ~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~------------------- 135 (265)
T PRK10812 75 YDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR------------------- 135 (265)
T ss_pred hHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch-------------------
Confidence 234455555443 33344331 111000000012234578889999999999999995422
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC
Q 010547 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334 (507)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 334 (507)
..+++++++.... ..+. +.|+.+ ++.+.++.+.+.|..+++....
T Consensus 136 ---------------~~~l~iL~~~~~~----~~~~-v~H~fs--G~~~~a~~~~~~G~~is~~g~~------------- 180 (265)
T PRK10812 136 ---------------ADTLAILREEKVT----DCGG-VLHCFT--EDRETAGKLLDLGFYISFSGIV------------- 180 (265)
T ss_pred ---------------HHHHHHHHhhcCC----CCCE-EEEeec--CCHHHHHHHHHCCCEEEECeee-------------
Confidence 2445555543110 1122 467776 6677888888888766653110
Q ss_pred CCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCC
Q 010547 335 DTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVT 411 (507)
Q Consensus 335 ~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls 411 (507)
.......+.+.++.. -.+.+.||..-..+.. +. +-..--..+...... +.-.|++
T Consensus 181 -----------t~~~~~~~~~~~~~ipldrlLlETD~P~~~p~~-------~~----g~~n~P~~i~~v~~~ia~l~g~~ 238 (265)
T PRK10812 181 -----------TFRNAEQLRDAARYVPLDRLLVETDSPYLAPVP-------HR----GKENQPAMVRDVAEYMAVLKGVS 238 (265)
T ss_pred -----------ecCccHHHHHHHHhCChhhEEEecCCCCCCCcC-------CC----CCCCCcHHHHHHHHHHHHHhCCC
Confidence 001112233444443 3568999964221110 00 000001112322232 3446899
Q ss_pred HHHHHHHHhhchhHHhCC
Q 010547 412 LEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 412 ~~~al~~~T~n~A~~lgl 429 (507)
.+++.+..+.|+.++|++
T Consensus 239 ~eei~~~~~~N~~~lf~~ 256 (265)
T PRK10812 239 VEELAQVTTDNFARLFHI 256 (265)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999999999998
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-05 Score=72.82 Aligned_cols=241 Identities=19% Similarity=0.202 Sum_probs=136.3
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc--CceeeEEEeccccCCC--
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPEN-- 175 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-- 175 (507)
|||+|+|+... ...++.......+...||+.++..+ ...+......+.++. ..+..++.+... ...
T Consensus 3 liDtH~HL~~~--~~~~d~~~vi~~a~~~gv~~~~~~g-------~~~~~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~ 72 (256)
T COG0084 3 LIDTHCHLDFE--EFDEDRDEVIARAREAGVKKMVVVG-------TDLEDFKRALELAEKYPNVYAAVGVHPLD-ADEHS 72 (256)
T ss_pred cEEeeeCCCch--hhcCCHHHHHHHHHHcCCcEEEEee-------cCHHHHHHHHHHHHhCCCeEEEEeeCCCc-ccccc
Confidence 79999999872 2334566778888999999999664 234444444444443 333334443322 111
Q ss_pred cccHHHHHHHHH--cCCcEEEEcccCCCCCCCCC-C-----CHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCc
Q 010547 176 AYNASALEALLN--AGVLGLKSFMCPSGINDFPM-T-----NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 247 (507)
Q Consensus 176 ~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~-~-----~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~ 247 (507)
+...+.+.++.. ..+..++.. +- ++... . -.+.+++.++.|+++++|+.+|+.+..
T Consensus 73 ~~~~~~l~~~~~~~~~vvaIGEi-GL---Dy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~------------ 136 (256)
T COG0084 73 EEDLEELEQLAEHHPKVVAIGEI-GL---DYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH------------ 136 (256)
T ss_pred HHHHHHHHHHHhcCCCeEEEEec-cc---CccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH------------
Confidence 234455666664 344444442 11 11111 1 235688889999999999999996532
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccc
Q 010547 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 327 (507)
Q Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~ 327 (507)
+.+++++++... ..--+.|+.+ ++.++.+.+.+.|.-+++.-..
T Consensus 137 ----------------------~d~~~iL~~~~~------~~~gi~HcFs--Gs~e~a~~~~d~G~yisisG~i------ 180 (256)
T COG0084 137 ----------------------EDTLEILKEEGA------PVGGVLHCFS--GSAEEARKLLDLGFYISISGIV------ 180 (256)
T ss_pred ----------------------HHHHHHHHhcCC------CCCEEEEccC--CCHHHHHHHHHcCeEEEECcee------
Confidence 566777776411 2345788888 7888999999998766553211
Q ss_pred ccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHH
Q 010547 328 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGR 406 (507)
Q Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 406 (507)
.++ .......+.+.+.-. ...+-||++-..+.. +. |-..-...+..... .+.
T Consensus 181 ---------tfk------~a~~~~ev~~~iPld-rLL~ETDsPyl~P~p-------~r----GkrNeP~~v~~v~~~iAe 233 (256)
T COG0084 181 ---------TFK------NAEKLREVARELPLD-RLLLETDAPYLAPVP-------YR----GKRNEPAYVRHVAEKLAE 233 (256)
T ss_pred ---------ecC------CcHHHHHHHHhCCHh-HeEeccCCCCCCCcC-------CC----CCCCCchHHHHHHHHHHH
Confidence 001 111222222222222 246899954322211 10 10111111222222 234
Q ss_pred hcCCCHHHHHHHHhhchhHHhCC
Q 010547 407 KYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 407 ~~gls~~~al~~~T~n~A~~lgl 429 (507)
-.|++++++.+..|.|.-+++++
T Consensus 234 lk~~~~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 234 LKGISAEEVAEITTENAKRLFGL 256 (256)
T ss_pred HhCCCHHHHHHHHHHHHHHHhcC
Confidence 45899999999999999988874
|
|
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-05 Score=72.50 Aligned_cols=248 Identities=18% Similarity=0.190 Sum_probs=130.8
Q ss_pred ecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc--CceeeEEEeccccCC
Q 010547 97 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPE 174 (507)
Q Consensus 97 ~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 174 (507)
++.+||+|+|+..... .++.......+...||+.++..+ ...+......+.... .....++.+......
T Consensus 2 ~~~~iD~HcHl~~~~~--~~~~~~~l~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~ 72 (258)
T PRK11449 2 ICRFIDTHCHFDFPPF--SGDEEASLQRAAQAGVGKIIVPA-------TEAENFARVLALAERYQPLYAALGLHPGMLEK 72 (258)
T ss_pred CceEEEeccCCCChhh--ccCHHHHHHHHHHCCCCEEEEee-------CCHHHHHHHHHHHHhCCCEEEEEeeCcCcccc
Confidence 4569999999975332 23456667778889999988653 234444444444432 223333333322222
Q ss_pred -CcccHHHHHHHHH-c--CCcEEEEcccCCCCCCCCC--CCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcC
Q 010547 175 -NAYNASALEALLN-A--GVLGLKSFMCPSGINDFPM--TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 248 (507)
Q Consensus 175 -~~~~~~~~~~~~~-~--g~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~ 248 (507)
.....+.+.++.. . .+.+++.. +.+....... .-.+.+.+.++.|++++.||.+|+....
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~aIGEi-GLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~------------- 138 (258)
T PRK11449 73 HSDVSLDQLQQALERRPAKVVAVGEI-GLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH------------- 138 (258)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEec-ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc-------------
Confidence 1223444554443 1 23344331 1110000000 1235688889999999999999996432
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccc
Q 010547 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (507)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~ 328 (507)
..+++++++.+. ..-.+.|+.+ ++.+.++.+.+.|..+++.-..
T Consensus 139 ---------------------~~~~~il~~~~~------~~~~i~H~fs--G~~~~a~~~l~~G~~iS~~g~i------- 182 (258)
T PRK11449 139 ---------------------DKLAMHLKRHDL------PRTGVVHGFS--GSLQQAERFVQLGYKIGVGGTI------- 182 (258)
T ss_pred ---------------------HHHHHHHHhcCC------CCCeEEEcCC--CCHHHHHHHHHCCCEEEeCccc-------
Confidence 355555554311 1123678877 5677888888888765542110
Q ss_pred cCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHh
Q 010547 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRK 407 (507)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 407 (507)
.+. .......+.+.+... .+.+.||++-.... ++. +-..-...+...+.. +.-
T Consensus 183 --------t~~------~~~~~~~~~~~ipld-riL~ETD~P~l~p~-------~~~----~~~n~p~~~~~~~~~ia~l 236 (258)
T PRK11449 183 --------TYP------RASKTRDVIAKLPLA-SLLLETDAPDMPLN-------GFQ----GQPNRPEQAARVFDVLCEL 236 (258)
T ss_pred --------ccc------CcHHHHHHHHhCChh-hEEEecCCCCCCCC-------CCC----CCCCCChHHHHHHHHHHHH
Confidence 000 111122222222222 35799996532111 010 000011113333333 455
Q ss_pred cCCCHHHHHHHHhhchhHHhCC
Q 010547 408 YGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 408 ~gls~~~al~~~T~n~A~~lgl 429 (507)
.+++++++.+..+.|..++||+
T Consensus 237 ~~~~~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 237 RPEPADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred HCcCHHHHHHHHHHHHHHHhCc
Confidence 6899999999999999999875
|
|
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-05 Score=73.56 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCc
Q 010547 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (507)
Q Consensus 209 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~ 288 (507)
..+.+++.++.|+++++++.+|+..... .....++.+.+.+. ...
T Consensus 134 q~~~f~~~~~lA~~~~~Pv~iH~~~~~~-------------------------------~~~~~l~~l~~~g~----~~~ 178 (293)
T cd00530 134 EEKVLRAAARAQKETGVPISTHTQAGLT-------------------------------MGLEQLRILEEEGV----DPS 178 (293)
T ss_pred HHHHHHHHHHHHHHHCCeEEEcCCCCcc-------------------------------ccHHHHHHHHHcCC----Chh
Confidence 3457889999999999999999954200 11233444443210 122
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEe
Q 010547 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLS 366 (507)
Q Consensus 289 ~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lg 366 (507)
++.+.|+... .+.+.++.+.+.|..+........ .. ...++ .......+.++++.|. .+.++
T Consensus 179 ~~vi~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~~-----------~~--~~~~~--~~~~~~~l~~~~~~~~~d~ill~ 242 (293)
T cd00530 179 KVVIGHLDRN-DDPDYLLKIAALGAYLEFDGIGKD-----------KI--FGYPS--DETRADAVKALIDEGYGDRLLLS 242 (293)
T ss_pred heEEeCCCCC-CCHHHHHHHHhCCCEEEeCCCCcc-----------cc--cCCCC--HHHHHHHHHHHHHCCCcCCEEEe
Confidence 4678899843 456788888888876655321100 00 00000 1233455777888876 45999
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 427 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~l 427 (507)
||........ . .+.-.+....+......+...|++.+++.++.+.||+++|
T Consensus 243 TD~p~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 243 HDVFRKSYLE-K---------RYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred CCcCchhhhh-h---------ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 9965322210 0 0111233333445555677889999999999999999875
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-05 Score=73.79 Aligned_cols=245 Identities=21% Similarity=0.244 Sum_probs=125.9
Q ss_pred eecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc---CceeeEEEeccccCC-Cc
Q 010547 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPE-NA 176 (507)
Q Consensus 101 ID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~ 176 (507)
||+|+|+.... ..++.....+.+.+.|++.++... ...+......+.... .....++.+...... ..
T Consensus 1 iD~H~Hl~~~~--~~~~~~~~~~~~~~~g~~~~i~~~-------~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~ 71 (255)
T PF01026_consen 1 IDAHCHLDSPR--FEEDRPEVLERAREAGVSAIIIVS-------TDPEDWERVLELASQYPDRVYPALGIHPWEAHEVNE 71 (255)
T ss_dssp EEEEE-TTSGG--GTTTHHHHHHHHHHTTEEEEEEEE-------SSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSH
T ss_pred CcCccCCCChh--hCcCHHHHHHHHHHcCCCEEEEcC-------CCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhH
Confidence 89999998721 123456667888999999997553 122333343333332 233444444433333 22
Q ss_pred ccHHHHHHH--HH-cCCcEEEEc-ccCC-CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcc
Q 010547 177 YNASALEAL--LN-AGVLGLKSF-MCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (507)
Q Consensus 177 ~~~~~~~~~--~~-~g~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (507)
...+.++++ .. ..+.+++.. +.+. ..........+.+.+.+++|++++.++.+|+...
T Consensus 72 ~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a----------------- 134 (255)
T PF01026_consen 72 EDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKA----------------- 134 (255)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESH-----------------
T ss_pred HHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCc-----------------
Confidence 334555555 32 334344331 1110 0000001233568888999999999999999542
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCC
Q 010547 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331 (507)
Q Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~ 331 (507)
..++++++++... .....+.|+.+ ++.+.++...+.|.-+++..... .
T Consensus 135 -----------------~~~~l~il~~~~~-----~~~~~i~H~f~--g~~~~~~~~~~~g~~~S~~~~~~---~----- 182 (255)
T PF01026_consen 135 -----------------HEELLEILKEYGP-----PNLRVIFHCFS--GSPEEAKKFLDLGCYFSFSGAIT---F----- 182 (255)
T ss_dssp -----------------HHHHHHHHHHTTG-----GTSEEEETT----S-HHHHHHHHHTTEEEEEEGGGG---S-----
T ss_pred -----------------HHHHHHHHHhccc-----cceeEEEecCC--CCHHHHHHHHhcCceEEeccccc---c-----
Confidence 2467777776511 01166788877 67777888878776665532210 0
Q ss_pred CCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCC
Q 010547 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGV 410 (507)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gl 410 (507)
+.......+.+.+. --.+.+-||.+-... .. +. +.......+..... .+.-.++
T Consensus 183 -------------~~~~~~~~~~~~ip-~drillETD~P~~~~-~~------~~----~~~~~p~~i~~~~~~la~~~~~ 237 (255)
T PF01026_consen 183 -------------KNSKKVRELIKAIP-LDRILLETDAPYLAP-DP------YR----GKPNEPSNIPKVAQALAEIKGI 237 (255)
T ss_dssp -------------TTSHHHHHHHHHS--GGGEEEE-BTTSSEC-TT------ST----TSE--GGGHHHHHHHHHHHHTS
T ss_pred -------------cccHHHHHHHhcCC-hhhEEEcCCCCcCCc-cc------cC----CCCCChHHHHHHHHHHHHHcCC
Confidence 01111222222221 234679999532111 00 00 00111112333333 3455789
Q ss_pred CHHHHHHHHhhchhHHhC
Q 010547 411 TLEQLASWWSERPAKLAG 428 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lg 428 (507)
+++++.+..+.|..+++|
T Consensus 238 ~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 238 SLEELAQIIYENAKRLFG 255 (255)
T ss_dssp THHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999886
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00034 Score=65.55 Aligned_cols=252 Identities=12% Similarity=0.067 Sum_probs=128.2
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcC--ceeeEEEeccccCCC-c
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPEN-A 176 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~ 176 (507)
|||+|+|+..... .++.......+.+.||..++..+ ...+......+..... ....++.|....... .
T Consensus 1 ~iDtH~HL~~~~~--~~d~~~vl~~a~~~gv~~~i~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~ 71 (258)
T PRK10425 1 MFDIGVNLTSSQF--AKDRDDVVARAFAAGVNGMLITG-------TNLRESQQAQKLARQYPSCWSTAGVHPHDSSQWQA 71 (258)
T ss_pred CEEeeeCcCChhh--hccHHHHHHHHHHCCCCEEEEeC-------CCHHHHHHHHHHHHhCCCEEEEEEeCcCccccCCH
Confidence 6999999975332 24577778888899998888553 2344444444444332 233334333222221 2
Q ss_pred ccHHHHHHHHHc-CCcEEEEc-ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccc
Q 010547 177 YNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (507)
Q Consensus 177 ~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 254 (507)
...+.+.++.+. ...+++.. +.+.........-.+.+++.++.|++++.|+.+|+....
T Consensus 72 ~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~------------------- 132 (258)
T PRK10425 72 ATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH------------------- 132 (258)
T ss_pred HHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch-------------------
Confidence 223444444432 22233221 111000000001135578889999999999999995321
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC
Q 010547 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334 (507)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 334 (507)
.++++++++... ..+-.+.|+.+ ++.+.++.+.+.|.-+++....
T Consensus 133 ---------------~~~l~iL~~~~~-----~~~~~i~H~fs--G~~~~~~~~l~~G~~~si~g~i------------- 177 (258)
T PRK10425 133 ---------------ERFMALLEPWLD-----KLPGAVLHCFT--GTREEMQACLARGLYIGITGWV------------- 177 (258)
T ss_pred ---------------HHHHHHHHHhcc-----CCCCeEEEecC--CCHHHHHHHHHCCCEEEECcee-------------
Confidence 345555554210 11123568887 6778888888888766553111
Q ss_pred CCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHH
Q 010547 335 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLE 413 (507)
Q Consensus 335 ~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~ 413 (507)
... +.......+.+.+.-. .+.+-||++-..+.. +.....+-..-...+...... +.-.+++++
T Consensus 178 ----~~~---~~~~~~~~~~~~ipld-rlLlETDaP~l~P~~-------~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~ 242 (258)
T PRK10425 178 ----CDE---RRGLELRELLPLIPAE-RLLLETDAPYLLPRD-------LTPKPASRRNEPAFLPHILQRIAHWRGEDAA 242 (258)
T ss_pred ----ecc---cccHHHHHHHHhCChH-HEEEeccCCCCCCCC-------cCCCCCCCCCCcHHHHHHHHHHHHHHCcCHH
Confidence 000 0011111222222211 356899954211100 000000001111123333333 445689999
Q ss_pred HHHHHHhhchhHHhCC
Q 010547 414 QLASWWSERPAKLAGQ 429 (507)
Q Consensus 414 ~al~~~T~n~A~~lgl 429 (507)
++.+..+.|.-+.+|+
T Consensus 243 ~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 243 WLAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999888874
|
|
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-05 Score=72.80 Aligned_cols=144 Identities=20% Similarity=0.181 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCC
Q 010547 207 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286 (507)
Q Consensus 207 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (507)
..+++.+..+++.|+++|.++.+|+.+... ...+...+ .+.
T Consensus 168 ~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~-----------------------------~~~~~~~~---~~~------- 208 (324)
T TIGR01430 168 GGPPPDFVRAFAIARELGLHLTVHAGELGG-----------------------------PESVREAL---DDL------- 208 (324)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEecCCCCC-----------------------------hHHHHHHH---HHc-------
Confidence 345889999999999999999999954311 00111111 111
Q ss_pred CceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEe
Q 010547 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (507)
Q Consensus 287 g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lg 366 (507)
|. ..+.|........+.++.+++.|+.+.. ||..-... + ..+ .....++.+++++|+++++|
T Consensus 209 g~-~ri~Hg~~l~~~~~~i~~l~~~gi~v~~--cP~Sn~~l-------~----~~~----~~~~~pi~~l~~~Gv~v~ig 270 (324)
T TIGR01430 209 GA-TRIGHGVRALEDPELLKRLAQENITLEV--CPTSNVAL-------G----VVK----SLAEHPLRRFLEAGVKVTLN 270 (324)
T ss_pred Cc-hhcchhhhhccCHHHHHHHHHcCceEEE--CCcccccc-------c----ccC----CcccChHHHHHHCCCEEEEC
Confidence 11 1244544321234567777788876544 66321110 0 000 01123567889999999999
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
||....... . +...+.. ....+++++| ++.+|.|+++++-+
T Consensus 271 TD~~~~~~~-~--------------------l~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~ 312 (324)
T TIGR01430 271 SDDPAYFGS-Y--------------------LTEEYEIAAKHAGLTEEE-LKQLARNALEGSFL 312 (324)
T ss_pred CCCCcccCC-C--------------------HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 997643221 1 3333333 3457999999 77899999998766
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-06 Score=67.68 Aligned_cols=140 Identities=24% Similarity=0.336 Sum_probs=87.6
Q ss_pred CCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecccc
Q 010547 93 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 172 (507)
Q Consensus 93 g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (507)
||+|+|||||.|+|+..++....+.+.. |+..+| ++.|.. .. +.
T Consensus 1 ~kli~~g~vd~hVhlrepg~~~keti~t-----------T~~amp-nt~paP----------------a~--------it 44 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREPGFEAKETIET-----------TWCAMP-NTFPAP----------------AG--------IT 44 (142)
T ss_pred Cceeehhhhhhhhhhhcccchhhhhhhc-----------eeeecC-ccCCCC----------------cc--------ee
Confidence 6899999999999999887664443322 888887 666654 00 11
Q ss_pred CCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
.+. .|-.++.. .. ++........+.+..+. ++++..+..||++...+..+....+ ...
T Consensus 45 v~~------------~~~e~~af--sd---dg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~g----e~~ 102 (142)
T PF12890_consen 45 VED------------DGEEAFAF--SD---DGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDG----ELP 102 (142)
T ss_pred eee------------cCcceEEE--ec---CCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccc----hhh
Confidence 000 01112211 11 33334455666777777 8899999999998876655444322 222
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 298 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~ 298 (507)
...+. ..+..+|...+.+-..++++. |-..|+.|+++.
T Consensus 103 q~~g~-~L~G~cEs~~~~rd~lLak~~-------g~~yhVchvstk 140 (142)
T PF12890_consen 103 QFLGV-YLKGNCESVQCARDVLLAKAT-------GCHYHVCHVSTK 140 (142)
T ss_pred HHhCC-cCCCcchHHHHHHHHHhhhcc-------CCcEEEEEEecc
Confidence 22220 133367888889999999976 888999998864
|
|
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00015 Score=70.92 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCC
Q 010547 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (507)
Q Consensus 208 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g 287 (507)
.+.+.+..+++.|+++|.++.+|+.+... ...+...++ ..+. .
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~-----------------------------~~~~~~a~~---~~g~-----~ 212 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGG-----------------------------PESVRDALD---LLGA-----E 212 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCC-----------------------------HHHHHHHHH---HcCC-----c
Confidence 37889999999999999999999854211 011122222 1111 1
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeC
Q 010547 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367 (507)
Q Consensus 288 ~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgt 367 (507)
.+.|+.......+.++.+++.|+.+.. ||..- +.... . ......++.++++.|+++++||
T Consensus 213 ---~i~H~~~l~~~~~~~~~l~~~gi~v~~--~P~sn------~~l~~-----~----~~~~~~p~~~l~~~Gv~v~lgT 272 (325)
T cd01320 213 ---RIGHGIRAIEDPELVKRLAERNIPLEV--CPTSN------VQTGA-----V----KSLAEHPLRELLDAGVKVTINT 272 (325)
T ss_pred ---ccchhhccCccHHHHHHHHHcCCeEEE--CCCcc------ccccc-----c----CCcccChHHHHHHCCCEEEECC
Confidence 244444321233567777788876554 66311 10000 0 0011335678899999999999
Q ss_pred CCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC
Q 010547 368 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 368 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl 429 (507)
|..+..... +...+..+ ...+++++|+ ..+|.|++++.-+
T Consensus 273 D~~~~~~~~---------------------~~~e~~~~~~~~~l~~~el-~~~~~na~~~~f~ 313 (325)
T cd01320 273 DDPTVFGTY---------------------LTDEYELLAEAFGLTEEEL-KKLARNAVEASFL 313 (325)
T ss_pred CCCcccCCC---------------------HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHhCC
Confidence 976432211 22233333 4569999995 5588999998765
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0011 Score=63.02 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCc
Q 010547 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (507)
Q Consensus 209 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~ 288 (507)
....++++.+.+++.|.++.+|...... . .+.++++.+.+. .-.
T Consensus 137 E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~-------------------------------g-~e~l~il~e~Gv----d~~ 180 (292)
T PRK09875 137 EEKVFIAAALAHNQTGRPISTHTSFSTM-------------------------------G-LEQLALLQAHGV----DLS 180 (292)
T ss_pred HHHHHHHHHHHHHHHCCcEEEcCCCccc-------------------------------h-HHHHHHHHHcCc----Ccc
Confidence 3345777788888899999999743211 1 223555555411 023
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEe
Q 010547 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLS 366 (507)
Q Consensus 289 ~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lg 366 (507)
++.+.|+... ...+.+.++.+.|+-+.++..-. . ...| .......+..+++.| -.+.++
T Consensus 181 rvvi~H~d~~-~d~~~~~~l~~~G~~l~fD~~g~--------------~-~~~p---d~~r~~~i~~L~~~Gy~drilLS 241 (292)
T PRK09875 181 RVTVGHCDLK-DNLDNILKMIDLGAYVQFDTIGK--------------N-SYYP---DEKRIAMLHALRDRGLLNRVMLS 241 (292)
T ss_pred eEEEeCCCCC-CCHHHHHHHHHcCCEEEeccCCC--------------c-ccCC---HHHHHHHHHHHHhcCCCCeEEEe
Confidence 7899999866 77888888889998776643210 0 0011 233345566677776 457899
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lg 428 (507)
+|....+. ....+| .|+...+.......++.|++-+++=++...||+++|+
T Consensus 242 ~D~~~~~~----------~~~~gg-~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 242 MDITRRSH----------LKANGG-YGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred CCCCCccc----------ccccCC-CChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 99753321 112222 5666667777777888999999999999999999874
|
|
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00038 Score=68.58 Aligned_cols=143 Identities=18% Similarity=0.145 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCC
Q 010547 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (507)
Q Consensus 208 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g 287 (507)
.+++.+.++++.|+++|.++.+|+.+... ...+...++. . |
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~-----------------------------~~~~~~al~~---l-------g 219 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGEAGG-----------------------------PESIWEALDE---L-------G 219 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCCCCc-----------------------------hhHHHHHHHH---c-------C
Confidence 46788999999999999999999954221 1112222221 1 1
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeC
Q 010547 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367 (507)
Q Consensus 288 ~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgt 367 (507)
. -.+.|+.......+.++.+++.|+.+. +||..-... ...+. ....++.++++.|+++++||
T Consensus 220 ~-~ri~Hg~~l~~~~~~~~~l~~~gi~v~--~cP~Sn~~l-----------~~~~~----~~~~pi~~l~~~Gv~v~lgT 281 (340)
T PRK09358 220 A-ERIGHGVRAIEDPALMARLADRRIPLE--VCPTSNVQT-----------GAVPS----LAEHPLKTLLDAGVRVTINT 281 (340)
T ss_pred C-cccchhhhhccCHHHHHHHHHcCCeEE--ECCCccccc-----------cccCC----cccChHHHHHHCCCEEEECC
Confidence 1 123555443123456777778887654 466421100 00000 01235678899999999999
Q ss_pred CCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC
Q 010547 368 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 368 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl 429 (507)
|..+..... +...+..+ ...+++++++ ..++.|+.++--+
T Consensus 282 D~~~~~~~~---------------------l~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~ 322 (340)
T PRK09358 282 DDPLVFGTT---------------------LTEEYEALAEAFGLSDEDL-AQLARNALEAAFL 322 (340)
T ss_pred CCCcccCCC---------------------HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCC
Confidence 976443211 33333333 4469999996 4557788877544
|
|
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0062 Score=53.72 Aligned_cols=238 Identities=19% Similarity=0.234 Sum_probs=127.6
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh-------cCceeeEEEecccc
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-------KRIYVDVGFWGGLV 172 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 172 (507)
+||+|+|+...+.. -...|..+|+-+++.......|. ...+.+....+..- .+..+....-.|..
T Consensus 2 ~iD~HiH~d~r~~e-------DlekMa~sGI~~Vit~AhdP~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 2 YIDSHIHLDVRGFE-------DLEKMALSGIREVITLAHDPYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred ccccccccccccHH-------HHHHHHHhChhhhhhcccCCCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 79999998764322 24556677888887664222222 33444444333331 12334444444444
Q ss_pred CCC-cccH----HHHHHHH-HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccC
Q 010547 173 PEN-AYNA----SALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 246 (507)
Q Consensus 173 ~~~-~~~~----~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~ 246 (507)
+.. +... ..+..+. +.+..+++-. |....+....+.++..+++|+++++|+.+|..
T Consensus 74 Pr~iP~e~~~~l~~L~~~l~~e~VvAiGEi----GLe~~t~~E~evf~~QL~LA~e~dvPviVHTP-------------- 135 (254)
T COG1099 74 PRAIPPELEEVLEELEELLSNEDVVAIGEI----GLEEATDEEKEVFREQLELARELDVPVIVHTP-------------- 135 (254)
T ss_pred CCCCCchHHHHHHHHHhhcccCCeeEeeec----ccccCCHHHHHHHHHHHHHHHHcCCcEEEeCC--------------
Confidence 432 2212 2233332 2344455441 11222223345578889999999999999983
Q ss_pred cCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccc
Q 010547 247 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326 (507)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~ 326 (507)
.....+.....++.+.+.+. ....+.+.|++.. .++...+.+.-+...+.|.-+
T Consensus 136 ---------------r~nK~e~t~~ildi~~~~~l----~~~lvvIDH~N~e-----tv~~vld~e~~vGlTvqPgKl-- 189 (254)
T COG1099 136 ---------------RRNKKEATSKILDILIESGL----KPSLVVIDHVNEE-----TVDEVLDEEFYVGLTVQPGKL-- 189 (254)
T ss_pred ---------------CCcchhHHHHHHHHHHHcCC----ChhheehhcccHH-----HHHHHHhccceEEEEecCCcC--
Confidence 22344566778888876522 1224677787663 455555555544444444110
Q ss_pred cccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH
Q 010547 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405 (507)
Q Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 405 (507)
+......+.+. .| -++.+.||......+-. .++...-..
T Consensus 190 -------------------t~~eAveIV~e--y~~~r~ilnSD~~s~~sd~l-------------------avprtal~m 229 (254)
T COG1099 190 -------------------TVEEAVEIVRE--YGAERIILNSDAGSAASDPL-------------------AVPRTALEM 229 (254)
T ss_pred -------------------CHHHHHHHHHH--hCcceEEEecccccccccch-------------------hhhHHHHHH
Confidence 11222222222 24 45678888553322211 133334445
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCC
Q 010547 406 RKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 406 ~~~gls~~~al~~~T~n~A~~lgl 429 (507)
...|++-++.-+.+-.|+-+++|+
T Consensus 230 ~~~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 230 EERGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCc
Confidence 678999999999999998888875
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00084 Score=64.31 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCcc-cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
..++++....++.|.++.+|++... . . .+.++++.+.+. .-.+
T Consensus 142 k~lrAaa~A~~~TG~pI~~H~~~g~~~----------------------------~----~e~~~il~e~Gv----~~~r 185 (308)
T PF02126_consen 142 KVLRAAARAHKETGAPISTHTGRGTRM----------------------------G----LEQLDILEEEGV----DPSR 185 (308)
T ss_dssp HHHHHHHHHHHHHT-EEEEEESTTGTC----------------------------H----HHHHHHHHHTT------GGG
T ss_pred HHHHHHHHHHHHhCCeEEEcCCCCCcC----------------------------H----HHHHHHHHHcCC----ChhH
Confidence 4577777777888999999995432 1 1 233444444311 1347
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCCEEEecccccc-cccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEe
Q 010547 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL-AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLS 366 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lg 366 (507)
+.+.|+... ...+.++++.+.|+.+.++...+.. .... +..+.. ..+....+.+..++++|. .+.++
T Consensus 186 vvigH~D~~-~D~~y~~~la~~G~~l~~D~~g~~~~g~~~------~~~~~~---~~d~~ri~~l~~L~~~Gy~~qIlLS 255 (308)
T PF02126_consen 186 VVIGHMDRN-PDLDYHRELADRGVYLEFDTIGREFSGKDK------NPRVGY---PPDEERIELLKELIEEGYADQILLS 255 (308)
T ss_dssp EEETSGGGS-T-HHHHHHHHHTT-EEEETTTT-B-TTTTT------CHSCTT---S-HHHHHHHHHHHHHTTTGGGEEE-
T ss_pred eEEeCCCCC-CCHHHHHHHHhcCCEEEecCCcccccCccc------CccCCC---CCHHHHHHHHHHHHHcCCcCcEEEe
Confidence 899999965 7888889998999888776542211 0000 000001 113445567788888875 47899
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhh--hHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQ--FVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 427 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~gls~~~al~~~T~n~A~~l 427 (507)
.|...... ....+..+.. ..+....-..++.|++-+++=++...||+|+|
T Consensus 256 ~D~~~k~~-----------~~~~gg~g~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 256 HDIGRKSR-----------LYRYGGGGYGYIYILTRFIPRLKERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp HHHESEEG-----------SSSCCHHHHTTTHHHHTHHHHHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred cccccccc-----------ccccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHc
Confidence 99653111 1111222222 12234444566789999999999999999987
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.7e-05 Score=49.58 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=21.3
Q ss_pred EEEEEEECCEEEEecCcccCCCCCccccc
Q 010547 478 KVLATISRGNLVYKEGNHAPAACGSPILA 506 (507)
Q Consensus 478 ~V~~v~v~G~~v~~~g~~~~~~~~~~~~~ 506 (507)
.|.+|||||+.++++|+++++.+|+.||.
T Consensus 19 GI~~V~VNG~~vv~~g~~t~~~~G~~lrr 47 (48)
T PF07908_consen 19 GIDYVFVNGQIVVEDGEVTGARPGRVLRR 47 (48)
T ss_dssp SEEEEEETTEEEECTTEESSS----B---
T ss_pred CEEEEEECCEEEEECCeECCCCCCeEecC
Confidence 59999999999999999999999999985
|
5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A. |
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.079 Score=50.08 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=71.3
Q ss_pred ceeecccccCCCCCCC----------CCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe
Q 010547 99 GLIDVHAHLDDPGRTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168 (507)
Q Consensus 99 GfID~H~H~~~~~~~~----------~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (507)
|.||+|.|+....... .-........+-..||+..+-.. .. ........+.+..+. .++ ...+..
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq-~~-~~~~~n~~~~~~~~~-~~r-~~g~~~- 75 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQ-AS-IYGADNSNLLDALAS-NGK-ARGGAT- 75 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeC-cc-ccCCchHHHHHHHhh-CCC-eEEEEE-
Confidence 6799999998643211 12344455666789999888653 11 111222222222221 111 112221
Q ss_pred ccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 010547 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (507)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 232 (507)
+.+.. ...+.++++.+.|..|++......+ ..+.+.+...++.+.++|.++.+|+.
T Consensus 76 --~~p~~-~~~~~l~~~~~~g~rGvRl~~~~~~-----~~~~~~~~~~~~~~~~~gl~v~~~~~ 131 (263)
T cd01311 76 --VDPRT-TTDAELKEMHDAGVRGVRFNFLFGG-----VDNKDELDEIAKRAAELGWHVQVYFD 131 (263)
T ss_pred --ECCCC-CCHHHHHHHHHCCCeEEEEecccCC-----CCCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 22222 2357788888899999997543211 12677889999999999999999983
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00065 Score=52.81 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=33.4
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP 80 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~ 80 (507)
..+++|.|+.|+|..++.++||-|+||||+.||+...+.
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkAGNPd 103 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKAGNPD 103 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-EB-TT
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEeccCCcc
Confidence 678999999999999999999999999999999876543
|
5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O .... |
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.012 Score=55.68 Aligned_cols=187 Identities=15% Similarity=0.114 Sum_probs=96.9
Q ss_pred CcccHHHHHHHH-HcCCcEEEEcccCCCCCCCCCCCHHHH-HHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 175 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI-KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 175 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
.+...+++++.. +.|..|++.+....+ . ......+ ..+++.+.++++++.+|+.....
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~---~-~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~---------------- 142 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGG---F-DPDDPRLDDPIFEAAEELGLPVLIHTGMTGF---------------- 142 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETT---C-CTTSGHCHHHHHHHHHHHT-EEEEEESHTHH----------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCc---c-ccccHHHHHHHHHHHHhhccceeeeccccch----------------
Confidence 345566777666 789999998653321 1 2233333 58999999999999999730000
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~ 332 (507)
............+..++.+ .+..++.+.|+.........+..+.++.-++.+.++.-..
T Consensus 143 -------~~~~~~~~~~~~~~~~~~~------~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~-------- 201 (273)
T PF04909_consen 143 -------PDAPSDPADPEELEELLER------FPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPP-------- 201 (273)
T ss_dssp -------HHHHHHHHHHHHHTTHHHH------STTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHS--------
T ss_pred -------hhhhHHHHHHHHHHHHHHH------hcCCeEEEecCcccchhHHHHHHHHHhCCccccccccccc--------
Confidence 0001122233444455554 4588999999987412333333332222345544332100
Q ss_pred CCCCceeEcCCCCChhhHHHHHHHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCC
Q 010547 333 DGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 410 (507)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~~~~~~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gl 410 (507)
. ....+ .......+.+++.. | -++.+|||......... ............+
T Consensus 202 ---~-~~~~~---~~~~~~~l~~~~~~~g~drilfGSD~P~~~~~~~--------------------~~~~~~~~~~~~l 254 (273)
T PF04909_consen 202 ---F-WYFWP---PSFDRPFLRRAVDEFGPDRILFGSDYPHPDGASP--------------------YEYIWEAYFLDDL 254 (273)
T ss_dssp ---S-EEEET---THHCHHHHHHHHHHHTGGGEEEE--TTSSTHHHH--------------------HHHHHHHHHHHHS
T ss_pred ---c-cccCc---ccccHHHHHHHHHHhCCceEEecCCCCCCCcccc--------------------HHHHHHhhhccCC
Confidence 0 01111 22223344444433 2 36789999765443211 1111111111117
Q ss_pred CHHHHHHHHhhchhHHhCC
Q 010547 411 TLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lgl 429 (507)
|.++.=+....|+++++|+
T Consensus 255 ~~~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 255 SEEEREKILYDNARRLYGL 273 (273)
T ss_dssp SHHHHHHHHTHHHHHHHTC
T ss_pred CHHHHHHHHhHhHHHHcCc
Confidence 9999999999999999986
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.14 Score=46.84 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCc
Q 010547 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (507)
Q Consensus 209 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~ 288 (507)
+.+.+..+++.|+..+.+++.|.++.+ ...+.++.+++++.+.+ ..
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~------------------------------~~~~~~i~~~ak~~G~~----~~ 188 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLD------------------------------EETYEEIAEMAKEAGIK----PY 188 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC------------------------------hHHHHHHHHHHHHhCCC----cc
Confidence 446688889999999999999997653 33456777777776221 22
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCC
Q 010547 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 368 (507)
Q Consensus 289 ~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD 368 (507)
++.-.|... .+......|+..+. ...+..+.+++..|-..++-||
T Consensus 189 ~VVkHha~p------~v~~~~~~Gi~pSV-----------------------------~asr~~v~~a~~~g~~FmmETD 233 (285)
T COG1831 189 RVVKHHAPP------LVLKCEEVGIFPSV-----------------------------PASRKNVEDAAELGPRFMMETD 233 (285)
T ss_pred eeEeecCCc------cchhhhhcCcCCcc-----------------------------cccHHHHHHHHhcCCceEeecc
Confidence 455555444 33333333432111 1223467788899999999999
Q ss_pred CCCCChhhhccccCCccccCCCCchhhhHHH-HHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 369 HSPTVPELKLLDEGNFLKAWGGISSLQFVLP-VTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
+.--.. .++.+-+-.. ++ ...+...+..++.+.+.+..-.||++.+|+
T Consensus 234 yIDDp~------------RpgavL~Pkt-VPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~ 282 (285)
T COG1831 234 YIDDPR------------RPGAVLGPKT-VPRRTREILEKGDLTEEDVYRIHVENPERVYGI 282 (285)
T ss_pred cccCcc------------cCCCcCCccc-hhHHHHHHHHhcCCcHHHHHHHHHhCHHHHhCc
Confidence 751110 0111111111 22 334445666789999999999999999987
|
|
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.2 Score=48.44 Aligned_cols=140 Identities=16% Similarity=0.106 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHhcC-CcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCC
Q 010547 209 NASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (507)
Q Consensus 209 ~~~~l~~~~~~a~~~~-~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g 287 (507)
+...+...++.|++.| .++.+|+.+.. ....+...++...
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~-----------------------------~~~~v~~~~~~~~---------- 191 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETG-----------------------------NREELLQALLLLP---------- 191 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCC-----------------------------ChHHHHHHHHhcc----------
Confidence 5778889999999999 99999995421 1112334444322
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeC
Q 010547 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367 (507)
Q Consensus 288 ~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgt 367 (507)
-.+.|........+.++.++++++.+. +||..-... . ..+ ....-++.++++.|++++++|
T Consensus 192 --~RIgHg~~~~~~p~~~~~l~~~~i~ie--~CP~SN~~~-----~------~~~----~~~~hP~~~~~~~G~~v~i~T 252 (305)
T cd00443 192 --DRIGHGIFLLKHPELIYLVKLRNIPIE--VCPTSNVVL-----G------TVQ----SYEKHPFMRFFKAGLPVSLST 252 (305)
T ss_pred --ceeeceEecCCCHHHHHHHHHcCCEEE--ECcchhhhh-----c------CCC----ChhhChHHHHHHCCCeEEEeC
Confidence 234444432233457777888887654 477421111 0 000 011234678899999999999
Q ss_pred CCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHhC
Q 010547 368 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 368 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~lg 428 (507)
|........ +...+. .....+++.++..+++ .|+-+.-.
T Consensus 253 Dd~~~~~~~---------------------l~~E~~~~~~~~~l~~~~l~~l~-~nsi~~sf 292 (305)
T cd00443 253 DDPGIFGTS---------------------LSEEYSLAAKTFGLTFEDLCELN-RNSVLSSF 292 (305)
T ss_pred CCCcccCCC---------------------hHHHHHHHHHHcCcCHHHHHHHH-HHHHHHhc
Confidence 987543221 222232 3456689999887765 45544433
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.69 Score=43.40 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 210 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
...++++.+..++-+.|+.+|.+...+ + .+.++++.+.+. .=.+
T Consensus 151 ek~lrAaA~A~~~Tg~Pi~tHt~~gt~-------------------------------g-~eq~~il~~egv----dl~~ 194 (316)
T COG1735 151 EKSLRAAARAHKETGAPISTHTPAGTM-------------------------------G-LEQLRILAEEGV----DLRK 194 (316)
T ss_pred HHHHHHHHHHhhhcCCCeEEeccchhh-------------------------------h-HHHHHHHHHcCC----ChhH
Confidence 344666667677779999999854321 2 233334443211 1236
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCe--eEEeC
Q 010547 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSS 367 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~--~~lgt 367 (507)
+.+.|+...++.....+.++.+|.-+.++... .-...| +......+.+...+|.. +.++-
T Consensus 195 v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG---------------~d~y~p---d~~r~~~~~~l~~~gy~d~i~ls~ 256 (316)
T COG1735 195 VSIGHMDPNTDDVYYQKKLADRGAFLEFDRIG---------------KDKYYP---DEDRIAPLLELVARGYADLILLSH 256 (316)
T ss_pred eeEeccCCCCChHHHHHHHHhcCceEEecccC---------------ccccCc---HHHhhhhHHHHHHhhHhhheeccc
Confidence 88999984448888899999989877655321 111111 33344555666666643 44552
Q ss_pred CCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 368 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 368 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
|........... ...... +-.+....+......+++.|++-+.+=++.--||++.|..
T Consensus 257 d~~~~~~~~~~~---~~~~~~-~~~g~~~I~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 257 DDICLSDDVFLK---SMLKAN-GGWGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred chhhhhhhHHHH---hhhhhc-CCcccchhhHhhHHHHHHcCCCHHHHHHHHhhCHHHHhcc
Confidence 322221111100 000111 1122222234445567788999777777888899999864
|
|
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.44 Score=47.02 Aligned_cols=140 Identities=15% Similarity=0.105 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceE
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 290 (507)
..+..+++.|++.|.++.+|+.+... +. ....+...+..+. ..
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~------------------------~~--~~~~v~~ai~~l~---~~-------- 248 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVT------------------------LP--NLNTLYSAIQVLK---VK-------- 248 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCC------------------------CC--cchhHHHHHHHhC---CC--------
Confidence 45788899999999999999943210 00 0011222222221 11
Q ss_pred EEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCC
Q 010547 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (507)
Q Consensus 291 ~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~ 370 (507)
.+.|........++++.++++++++. +||..-... ...+ ....-++.++++.|++++++||..
T Consensus 249 RIGHG~~~~~d~~l~~~l~~~~I~lE--vCPtSN~~~-----------~~v~----~~~~HPi~~l~~~Gv~v~InTDDp 311 (362)
T PTZ00124 249 RIGHGIRVAESQELIDMVKEKDILLE--VCPISNVLL-----------NNAK----SMDTHPIRKLYDAGVKVSVNSDDP 311 (362)
T ss_pred ccccccccCCCHHHHHHHHHcCCeEE--ECCcchhhh-----------hcCC----chhhHHHHHHHHCCCcEEEeCCCc
Confidence 13333322133567888888887654 477421111 0011 112346788999999999999987
Q ss_pred CCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHH
Q 010547 371 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL 426 (507)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~ 426 (507)
+..... +...+.. ....|++.++..+++. |+.++
T Consensus 312 ~~~~t~---------------------l~~Ey~~~~~~~gls~~~l~~l~~-nai~a 346 (362)
T PTZ00124 312 GMFLTN---------------------INDDYEELYTHLNFTLADFMKMNE-WALEK 346 (362)
T ss_pred cccCCC---------------------hhHHHHHHHHHcCCCHHHHHHHHH-HHHHH
Confidence 543211 3333333 3567999999988744 55444
|
|
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.22 Score=48.93 Aligned_cols=147 Identities=15% Similarity=0.072 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHhcC--CcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCC
Q 010547 209 NASHIKEGLSVLARYK--RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286 (507)
Q Consensus 209 ~~~~l~~~~~~a~~~~--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (507)
+...+..+++.|++.| .++.+|+.+... +.......+.+.+.+.. ++
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~------------------------~~~~~~~~v~~al~lg~----~R--- 225 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNG------------------------DGTETDENLVDALLLNT----KR--- 225 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcC------------------------CCCCChhHHHHHHHhCC----Cc---
Confidence 5678888999999999 999999953220 00000123444443322 22
Q ss_pred CceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEe
Q 010547 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (507)
Q Consensus 287 g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lg 366 (507)
+.|........++++.++++++.+. +||..-..+ ...+. ...-++.+++++|++++++
T Consensus 226 -----IGHG~~~~~dp~ll~~l~~~~I~lE--vCPtSN~~~-----------~~v~~----~~~HPl~~ll~~Gv~vtin 283 (345)
T cd01321 226 -----IGHGFALPKHPLLMDLVKKKNIAIE--VCPISNQVL-----------GLVSD----LRNHPAAALLARGVPVVIS 283 (345)
T ss_pred -----CccccccCcCHHHHHHHHHcCCeEE--ECcchhhhh-----------ccccc----hhhChHHHHHHCCCeEEEe
Confidence 2333222134567888888887654 477421111 01111 1123567889999999999
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcC---CCHHHHHHHHhhchhHHhCC
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYG---VTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~g---ls~~~al~~~T~n~A~~lgl 429 (507)
||......... +...+. .....| ++.+++.++ +.|+.++--+
T Consensus 284 TDDp~~f~t~~--------------------l~~Ey~~~~~~~g~~~l~~~~l~~l-~~nsi~~sF~ 329 (345)
T cd01321 284 SDDPGFWGAKG--------------------LSHDFYQAFMGLAPADAGLRGLKQL-AENSIRYSAL 329 (345)
T ss_pred CCCcchhCCCC--------------------chHHHHHHHHHhccCCCCHHHHHHH-HHHHHHHHCC
Confidence 99875432100 222222 334557 998887764 4566655444
|
|
| >PRK08392 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.3 Score=38.69 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.5
Q ss_pred eecccccCCCCCCCCCChhHHHHHHHhCCceEEE
Q 010547 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 134 (507)
Q Consensus 101 ID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~ 134 (507)
||.|+|..... ....+....+.+.+.|++.+.
T Consensus 1 ~D~H~HT~~sd--~~~~~~e~v~~A~~~Gl~~i~ 32 (215)
T PRK08392 1 MDLHTHTVYSD--GIGSVRDNIAEAERKGLRLVG 32 (215)
T ss_pred CccccCCCCcC--CcCCHHHHHHHHHHcCCCEEE
Confidence 79999988753 334578888999999999875
|
|
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.31 Score=47.25 Aligned_cols=143 Identities=18% Similarity=0.153 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCC
Q 010547 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287 (507)
Q Consensus 208 ~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g 287 (507)
..++....+++.++..|..+.+||.+.. ..+.+...+....-.
T Consensus 182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~-----------------------------~~~~i~~al~~~~~~-------- 224 (345)
T COG1816 182 YPPELFVSLFKLARDNGLKLTIHAGEAG-----------------------------GPESIRDALDLLGAE-------- 224 (345)
T ss_pred CCHHHHHHHHHHHHHcCceEEEeccccC-----------------------------CcHHHHHHHHHhchh--------
Confidence 4678889999999999999999995322 222334444433311
Q ss_pred ceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeC
Q 010547 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 367 (507)
Q Consensus 288 ~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgt 367 (507)
.+.|..-.....++++.+.+.++++.. ||- +.+. ....+ .-..-++.+++++|+++++.|
T Consensus 225 ---rI~HGi~~~~d~~L~~~l~~~qI~lev--CP~------SNi~-----~~~v~----~~~~hPf~~~~d~Gv~VsLnT 284 (345)
T COG1816 225 ---RIGHGIRAIEDPELLYRLAERQIPLEV--CPL------SNIQ-----LGVVP----SLAKHPFKKLFDAGVKVSLNT 284 (345)
T ss_pred ---hhccccccccCHHHHHHHHHhCCeeEE--CCc------chhh-----ccccc----chhhCcHHHHHHcCCceEEcC
Confidence 133433222444788888888887655 772 1111 11111 122335789999999999999
Q ss_pred CCCCCChhhhccccCCccccCCCCchhhhHHH-HHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 368 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLP-VTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 368 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
|...+.... +. .....+...+++.+|+.+++ .|+=+.-++
T Consensus 285 Ddp~~f~~~---------------------l~~Ey~~aa~~~~l~~~dl~~~a-rnav~~af~ 325 (345)
T COG1816 285 DDPLYFGTP---------------------LIEEYLVAAQIYGLSREDLCELA-RNAVEAAFI 325 (345)
T ss_pred CChhhcCCc---------------------hHHHHHHHHHHhCCCHHHHHHHH-HHHHHHccC
Confidence 988664311 22 22223556679988887744 454444443
|
|
| >PRK00912 ribonuclease P protein component 3; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.6 Score=38.09 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=44.8
Q ss_pred HHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC--CCCC
Q 010547 356 ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ--VSKG 433 (507)
Q Consensus 356 ~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl--~~~G 433 (507)
..+.|++++++||......-. .+......+...|++.+++..+.+.+|.+.+.. .+.+
T Consensus 163 ~~~~g~piiisSdAh~~~~l~--------------------~~~~~~~l~~~~Gl~~~~~~~~~~~~~~~i~~~~~~~~~ 222 (237)
T PRK00912 163 ARKYDFPLVLTSGAMSCYDLR--------------------SPREMIALAELFGMEEDEALKALSYYPESIIKKNRNRKN 222 (237)
T ss_pred HHhcCCCEEEeCCCCcccccC--------------------CHHHHHHHHHHcCCCHHHHHHHHHHhHHHHHHhhccCCC
Confidence 344599999999966332111 144456677889999999999999999999987 3344
Q ss_pred ccccC
Q 010547 434 AIAIG 438 (507)
Q Consensus 434 ~I~~G 438 (507)
.|..|
T Consensus 223 ~~~~~ 227 (237)
T PRK00912 223 YVIEG 227 (237)
T ss_pred ccccc
Confidence 45444
|
|
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.77 Score=44.99 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
+..|+...- ++. ...+.....+++.+++.|.++.+|+.+... ...
T Consensus 164 ~vvG~dl~g-----~E~-~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~-----------------------------~~~ 208 (331)
T PF00962_consen 164 GVVGFDLAG-----DED-GGPPLKFAPAFRKAREAGLKLTVHAGETGG-----------------------------PEH 208 (331)
T ss_dssp TEEEEEEES-----STT-STTGGGHHHHHHHHHHTT-EEEEEESSSST-----------------------------HHH
T ss_pred eEEEEEecC-----Ccc-cCchHHHHHHHhhhcccceeecceecccCC-----------------------------ccc
Confidence 677776631 111 123334888889999999999999944321 112
Q ss_pred HHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChh
Q 010547 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 348 (507)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 348 (507)
+...+..+. . -.+.|........++++.++++++++ ++||..-..... . ...
T Consensus 209 ~~~ai~~l~----------~-~RIgHG~~~~~~p~l~~~~~~~~I~i--EvcptSN~~~~~-~--------------~~~ 260 (331)
T PF00962_consen 209 IRDAILLLG----------A-DRIGHGVRLIKDPELLELLAERQIPI--EVCPTSNVQLGA-V--------------PSY 260 (331)
T ss_dssp HHHHHHTST------------SEEEE-GGGGGSHHHHHHHHHTT-EE--EE-HHHHHHTTS-S--------------STG
T ss_pred ccchhhhcc----------c-eeecchhhhhhhhHHHHHHHHhCCCe--eeCCCcCcccce-e--------------eec
Confidence 333333311 1 13555543324456777777887654 557743221100 0 011
Q ss_pred hHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHh
Q 010547 349 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLA 427 (507)
Q Consensus 349 ~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~l 427 (507)
..-++.++++.|++++++||...... .. +...+. .+...++|.++..+++ .|+.++-
T Consensus 261 ~~hP~~~~~~~gv~v~i~TDd~~~~~-------------------~~--l~~ey~~~~~~~~l~~~~l~~l~-~nsi~~s 318 (331)
T PF00962_consen 261 EEHPLRKLLDAGVPVSINTDDPGVFG-------------------TT--LSDEYYLAAEAFGLSLADLKQLA-RNSIEAS 318 (331)
T ss_dssp GG-CHHHHHHTT-EEEE--BSHHHHT--------------------S--HHHHHHHHHHHHT--HHHHHHHH-HHHHHCS
T ss_pred chhHHHHHHHcCCceeccCCCccccC-------------------CC--cHHHHHHHHHHcCCCHHHHHHHH-HHHHHHH
Confidence 12356788899999999999652211 11 333333 3456799998877754 4655544
Q ss_pred CC
Q 010547 428 GQ 429 (507)
Q Consensus 428 gl 429 (507)
.+
T Consensus 319 f~ 320 (331)
T PF00962_consen 319 FL 320 (331)
T ss_dssp SS
T ss_pred cC
Confidence 33
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.38 E-value=7.7 Score=37.17 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=95.8
Q ss_pred ccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcccccc
Q 010547 177 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 255 (507)
Q Consensus 177 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (507)
...+++++..+ .|..+++..-... ....++..+..+.+.|.++|+++.+|....... .+..
T Consensus 113 ~a~~E~er~v~~~gf~g~~l~p~~~----~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~----------~~~~---- 174 (293)
T COG2159 113 AAAEELERRVRELGFVGVKLHPVAQ----GFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG----------AGLE---- 174 (293)
T ss_pred HHHHHHHHHHHhcCceEEEeccccc----CCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC----------cccc----
Confidence 35567777665 5788887732211 123455668999999999999999998543220 0000
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC--ChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC
Q 010547 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333 (507)
Q Consensus 256 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~--~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~ 333 (507)
.....| ..+.+++.+ .+..++.+.|+. .. -..+.+..+.. .-++..+.+..
T Consensus 175 ~~~~~p--------~~~~~va~~------fP~l~IVl~H~G~~~p-~~~~a~~~a~~-~~nvy~d~s~~----------- 227 (293)
T COG2159 175 KGHSDP--------LYLDDVARK------FPELKIVLGHMGEDYP-WELEAIELAYA-HPNVYLDTSGV----------- 227 (293)
T ss_pred cCCCCc--------hHHHHHHHH------CCCCcEEEEecCCCCc-hhHHHHHHHHh-CCCceeeeecc-----------
Confidence 000111 233344444 347789999997 32 33344443322 22222222210
Q ss_pred CCCceeEcCCCCChhhHHHHHHHHhc--CCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCC
Q 010547 334 GDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVT 411 (507)
Q Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~l~~--G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls 411 (507)
..+..+ . .+.+.+.+ .-++.+|||+....... -.......+++
T Consensus 228 ---~~~~~~----~----~~~~~~~~~~~dkilFGSD~P~~~~~~------------------------~l~~~~~l~l~ 272 (293)
T COG2159 228 ---RPKYFA----P----PLLEFLKELGPDKILFGSDYPAIHPEV------------------------WLAELDELGLS 272 (293)
T ss_pred ---ccccCC----h----HHHHHHHhcccCeEEecCCCCCcCHHH------------------------HHHHHHhcCCC
Confidence 011111 0 23333333 24688999966444321 12234566788
Q ss_pred HHHHHHHHhhchhHHhCC
Q 010547 412 LEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 412 ~~~al~~~T~n~A~~lgl 429 (507)
.+..-+..-.|+++++|+
T Consensus 273 ~e~k~kiL~~NA~rll~l 290 (293)
T COG2159 273 EEVKEKILGENAARLLGL 290 (293)
T ss_pred HHHHHHHHHHhHHHHhCc
Confidence 888899999999999998
|
|
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=92.77 E-value=7.6 Score=40.00 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC
Q 010547 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (507)
Q Consensus 301 ~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~ 372 (507)
...+++.++++++.+ ++||..-.. ....+.++ .-++..++.+|++++++||..+.
T Consensus 361 ~P~l~~~vke~~I~l--EvCP~SN~~-----------l~~v~~~~----~HPl~~lla~Gvpv~InSDDP~~ 415 (479)
T TIGR01431 361 HPLVLQMLKERNIAV--EVNPISNQV-----------LQLVADLR----NHPCAYLFADNYPMVISSDDPAF 415 (479)
T ss_pred CHHHHHHHHHhCCeE--EECccchhh-----------hcccCCcc----cChHHHHHHCCCcEEEeCCCccc
Confidence 345777777887665 447732111 11111221 12467889999999999998754
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=9.9 Score=40.23 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=26.6
Q ss_pred eecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCC
Q 010547 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 101 ID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~ 137 (507)
+|.|+|..... ....+...++.+.+.|++.+.-..
T Consensus 336 ~DlH~HT~~sD--g~~sleemv~~A~~~Gl~~i~iTd 370 (570)
T PRK08609 336 GDLHMHTTWSD--GAFSIEEMVEACIAKGYEYMAITD 370 (570)
T ss_pred CCccccCCCCC--CCCCHHHHHHHHHHCCCCEEEEeC
Confidence 39999997552 234577888899999999988553
|
|
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.51 E-value=9.3 Score=35.81 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=78.4
Q ss_pred ecceeecccccCCCCCC--CC----------CChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh-cCce-
Q 010547 97 MPGLIDVHAHLDDPGRT--EW----------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIY- 162 (507)
Q Consensus 97 ~PGfID~H~H~~~~~~~--~~----------~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~- 162 (507)
...+||+|.|+...... .| -.+......+-.+|+-..+-.- ++-...+.+...+..+... ....
T Consensus 6 ~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq--~~~~~~D~~~e~~~v~~~~~~~g~~ 83 (279)
T COG3618 6 PQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQ--VNVDPRDNEKELAFVAELAERHGGI 83 (279)
T ss_pred cccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEe--cccCccchHHHHHHHHhhHHhhCce
Confidence 56789999999765211 11 1133344555678888766442 1222223333333333333 2222
Q ss_pred eeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhh
Q 010547 163 VDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 242 (507)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 242 (507)
+.+ +....++..+.+++....-..|+...+ .. ...+....+.+++.++..+++|..+..+...
T Consensus 84 vg~-----id~~~~e~~a~L~~~~~~~~~GvR~~l-~~--~p~~~~~a~~~r~~~~rL~~~gl~fdl~~~~--------- 146 (279)
T COG3618 84 VGV-----IDECRPEFAAKLERARYPFFRGVRRNL-HV--VPDGLFEAPAWRANVERLAKLGLHFDLQVDP--------- 146 (279)
T ss_pred EEE-----EecCCchHHHHHHHhcccccceeeehh-hc--CCccchhhHHHHHHHHHHHhcCCeEEEEeCh---------
Confidence 111 111222222333333211144554422 10 1112234478999999999999999988732
Q ss_pred cccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 010547 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 297 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~ 297 (507)
.++...+.+..+ .++.++.+.|+..
T Consensus 147 ------------------------~ql~~~i~l~~~------~Pd~~~VldH~G~ 171 (279)
T COG3618 147 ------------------------HQLPDLIPLALK------APDVNFVLDHCGR 171 (279)
T ss_pred ------------------------hhhHHHHHHHhh------CCCCCEEeccCCC
Confidence 234455555554 3477899999974
|
|
| >COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.3 Score=39.21 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=28.4
Q ss_pred eeecccccCCC---CCCCCCChhHHHHHHHhCCceEEEeCC
Q 010547 100 LIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 100 fID~H~H~~~~---~~~~~~~~~~~~~~~l~~GvTt~~~~~ 137 (507)
+||.|+|.-.. +..+.+.....++.+.+.|||+++..+
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 59999999654 333444455667888999999999765
|
|
| >PRK07945 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.07 E-value=36 Score=33.34 Aligned_cols=35 Identities=23% Similarity=0.036 Sum_probs=27.7
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeC
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 136 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~ 136 (507)
.+|.|+|..... ....+....+.+.+.|++.+.-.
T Consensus 97 ~~D~H~HT~~Sd--g~~~~ee~v~~Ai~~Gl~~i~~T 131 (335)
T PRK07945 97 RGDLHTHSDWSD--GGSPIEEMARTAAALGHEYCALT 131 (335)
T ss_pred hhhcccccCCCC--CCCCHHHHHHHHHHCCCCEEEEe
Confidence 479999998763 34568888999999999987643
|
|
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.55 E-value=21 Score=35.25 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCc
Q 010547 209 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288 (507)
Q Consensus 209 ~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~ 288 (507)
+.......+..+.+.|+...+|+.+... ....+..+++++.-.
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~----------------------------~~~~v~~~LD~l~~~--------- 267 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNG----------------------------GASVVKNALDLLGTE--------- 267 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCC----------------------------ChHHHHHHHHhhCCc---------
Confidence 3445555556666689999999954311 122344555533321
Q ss_pred eEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCC
Q 010547 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 368 (507)
Q Consensus 289 ~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD 368 (507)
.+.|...-.....++..++.+++.+. +||..-. ..... .++ ..-++.+.+++|+++.++||
T Consensus 268 --RIGHG~~l~~dp~L~~~~k~~nI~lE--iCP~SN~-----vl~~v------~d~----rnhp~~~~~~~~vP~vI~sD 328 (399)
T KOG1097|consen 268 --RIGHGYFLTKDPELINLLKSRNIALE--ICPISNQ-----VLGLV------SDL----RNHPVARLLAAGVPVVINSD 328 (399)
T ss_pred --cccCceeccCCHHHHHHHHhcCceEE--Eccchhh-----heecc------ccc----cccHHHHHHhCCCCEEEeCC
Confidence 12332211123367777777776654 4773211 11111 111 12256778889999999999
Q ss_pred CCCC
Q 010547 369 HSPT 372 (507)
Q Consensus 369 ~~~~ 372 (507)
...+
T Consensus 329 DP~~ 332 (399)
T KOG1097|consen 329 DPGF 332 (399)
T ss_pred Cccc
Confidence 7754
|
|
| >PRK06361 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.93 E-value=6.8 Score=35.46 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=59.0
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCC
Q 010547 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 369 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~ 369 (507)
-.+.|... -..+.++.+++.++.+.....+.. .......+..+.+.|++++++||.
T Consensus 115 dvlaHpd~--~~~~~~~~~~~~~~~lEin~~~~~----------------------~~~~~~~l~~a~~~gi~vv~~SDa 170 (212)
T PRK06361 115 DILAHPGL--ITEEEAELAAENGVFLEITARKGH----------------------SLTNGHVARIAREAGAPLVINTDT 170 (212)
T ss_pred cEecCcch--hhHHHHHHHHHcCeEEEEECCCCc----------------------ccchHHHHHHHHHhCCcEEEECCC
Confidence 45666654 334567777788766554321100 001112223334459999999997
Q ss_pred CCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 370 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
...... . .+..+.......|++.++++.+.+.||+++|++
T Consensus 171 H~~~d~-------------------~-~~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 171 HAPSDL-------------------I-TYEFARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred CCHHHH-------------------H-HHHHHHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 622110 0 134455567788999999999999999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 507 | ||||
| 3hm7_A | 448 | Crystal Structure Of Allantoinase From Bacillus Hal | 3e-63 | ||
| 3e74_A | 473 | Crystal Structure Of E. Coli Allantoinase With Iron | 1e-57 | ||
| 1gkr_A | 458 | L-Hydantoinase (Dihydropyrimidinase) From Arthrobac | 6e-29 | ||
| 3d6n_A | 422 | Crystal Structure Of Aquifex Dihydroorotase Activat | 4e-27 | ||
| 1xrf_A | 467 | The Crystal Structure Of A Novel, Latent Dihydrooro | 5e-27 | ||
| 3mpg_A | 428 | Dihydroorotase From Bacillus Anthracis Length = 428 | 3e-26 | ||
| 1yny_A | 461 | Molecular Structure Of D-Hydantoinase From A Bacill | 3e-25 | ||
| 3sfw_A | 461 | Crystal Structure Of Dihydropyrimidinase From Brevi | 4e-24 | ||
| 1k1d_A | 460 | Crystal Structure Of D-Hydantoinase Length = 460 | 5e-22 | ||
| 1nfg_A | 457 | Structure Of D-Hydantoinase Length = 457 | 2e-19 | ||
| 2z00_A | 426 | Crystal Structure Of Dihydroorotase From Thermus Th | 3e-19 | ||
| 3gri_A | 424 | The Crystal Structure Of A Dihydroorotase From Stap | 6e-18 | ||
| 3dc8_A | 490 | Crystal Structure Of Dihydropyrimidinase From Sinor | 8e-18 | ||
| 2gwn_A | 452 | The Structure Of Putative Dihydroorotase From Porph | 2e-15 | ||
| 1gkp_A | 458 | D-Hydantoinase (Dihydropyrimidinase) From Thermus S | 4e-15 | ||
| 2fty_A | 559 | Crystal Structure Of Dihydropyrimidinase From Sacch | 3e-14 | ||
| 4b91_A | 484 | Crystal Structure Of Truncated Human Crmp-5 Length | 2e-11 | ||
| 4b90_A | 586 | Crystal Structure Of Wt Human Crmp-5 Length = 586 | 3e-11 | ||
| 2ftw_A | 521 | Crystal Structure Of Dihydropyrimidinase From Dicty | 2e-10 | ||
| 2vr2_A | 541 | Human Dihydropyrimidinase Length = 541 | 9e-10 | ||
| 1kcx_A | 518 | X-Ray Structure Of Nysgrc Target T-45 Length = 518 | 5e-09 | ||
| 2gse_A | 501 | Crystal Structure Of Human Dihydropyrimidinease-Lik | 3e-06 |
| >pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans C-125 Length = 448 | Back alignment and structure |
|
| >pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions At The Metal Center Length = 473 | Back alignment and structure |
|
| >pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter Aurescens Length = 458 | Back alignment and structure |
|
| >pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 422 | Back alignment and structure |
|
| >pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase From Aquifex Aeolicus At 1.7 A Resolution Length = 467 | Back alignment and structure |
|
| >pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis Length = 428 | Back alignment and structure |
|
| >pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp. Ar9: Evidence For Mercury Inhibition Length = 461 | Back alignment and structure |
|
| >pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Brevibacillus Agri Nchu1002 Length = 461 | Back alignment and structure |
|
| >pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase Length = 460 | Back alignment and structure |
|
| >pdb|1NFG|A Chain A, Structure Of D-Hydantoinase Length = 457 | Back alignment and structure |
|
| >pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426 | Back alignment and structure |
|
| >pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From Staphylococcus Aureus Length = 424 | Back alignment and structure |
|
| >pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From Sinorhizobium Meliloti Length = 490 | Back alignment and structure |
|
| >pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From Porphyromonas Gingivalis Length = 452 | Back alignment and structure |
|
| >pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In Space Group C2221 Length = 458 | Back alignment and structure |
|
| >pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559 | Back alignment and structure |
|
| >pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Length = 484 | Back alignment and structure |
|
| >pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5 Length = 586 | Back alignment and structure |
|
| >pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Dictyostelium Discoideum Length = 521 | Back alignment and structure |
|
| >pdb|2VR2|A Chain A, Human Dihydropyrimidinase Length = 541 | Back alignment and structure |
|
| >pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45 Length = 518 | Back alignment and structure |
|
| >pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2 Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 509 bits (1314), Expect = e-179
Identities = 160/452 (35%), Positives = 231/452 (51%), Gaps = 26/452 (5%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ S +VT V I+ G + +I + +D + PG++DVH H
Sbjct: 10 IRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDG--PAIDGTGLHLFPGMVDVHVH 67
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166
++PGRTEWEGF SG+K+ AAGG+TT DMPLNS+P TI+ E L K A ++ VD
Sbjct: 68 FNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYR 127
Query: 167 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
FWGGLVP N L+ L + GV+G K+FM G +DF ++ + +G+ +A
Sbjct: 128 FWGGLVPG---NIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSI 184
Query: 227 LLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
L VHAE E + Y + RP E A+ +L A+ T
Sbjct: 185 LAVHAESNEMVNALTTIAIEEQRL----TVKDYSEARPIVSELEAVERILRFAQLT---- 236
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 343
+HI H+S L + +AK G +++VETCPHYL FS +E + KCAPP
Sbjct: 237 ---CCPIHICHVSSR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPP 292
Query: 344 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 403
+R+ E LW+ LM G ID++SSDHSP++P++K + WGGI+ Q L V +
Sbjct: 293 LRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLT 350
Query: 404 YG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH 461
G K + L Q+ S PAK G KG I +G A + + + L+ ++
Sbjct: 351 EGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASD-LY 409
Query: 462 MKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
+HP IS Y+G+R GKV TI +G VY++
Sbjct: 410 YRHP-ISPYVGQRFRGKVKHTICQGKHVYQDH 440
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 502 bits (1294), Expect = e-176
Identities = 155/457 (33%), Positives = 231/457 (50%), Gaps = 33/457 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
++ + +K G I +I + +V+D V+ PG++D H H+ +P
Sbjct: 31 TVILENEARVVDIAVKGGKIAAIGQDL-----GDAKEVMDASGLVVSPGMVDAHTHISEP 85
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170
GR+ WEG+ +GT+AAA GGITT+I+MPLN P+T+ +++LK DAA+ ++ +D GG
Sbjct: 86 GRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGG 145
Query: 171 LVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRP 226
LV N L L GV+G K F+ G NDF N +G L +P
Sbjct: 146 LVSY---NIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQP 202
Query: 227 LLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
+LVH E K E + Y+ +RP E AIR +L +AK
Sbjct: 203 VLVHCENALICDELGEEAKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA---- 254
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 343
G LH+ H+S ++ + A+ G IT E+CPHY ++ + T KC+PP
Sbjct: 255 ---GCRLHVCHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPP 310
Query: 344 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 403
IRD N++ +WE L +G ID L SDHSP PE+K GN +KAWGGI+ LQ + V +
Sbjct: 311 IRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFD 367
Query: 404 YG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462
+K G++L + A + G KG IA G AD V +P + + L ND +
Sbjct: 368 EAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDD-LEY 426
Query: 463 KHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 499
+H +S Y+GR + ++ TI RG+++Y P A
Sbjct: 427 RHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVA 462
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 442 bits (1140), Expect = e-153
Identities = 126/461 (27%), Positives = 218/461 (47%), Gaps = 28/461 (6%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
R+V+ G+ + +K+G + +I ++ S+ +D G +MPG++D H H+ D
Sbjct: 10 RLVSSDGITEADILVKDGKVAAISADTSDVEASR---TIDAGGKFVMPGVVDEHVHIIDM 66
Query: 111 GRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
+ F +++AA GGITT+I+MP + P T + + K A +R+ VD +G
Sbjct: 67 DLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQAGQRLKVDFALYG 125
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
G VP N + + +AG +G KS M S F + + E +A ++V
Sbjct: 126 GGVPGNL---PEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVV 182
Query: 230 HAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
HAE E + ++ +K + Y ++P E AI+ L + K+
Sbjct: 183 HAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQENEAIQRALLLQKEA------- 231
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
G L ++H+S+ ++L+ +A++ G + E+ P YL + ++ K APP+R
Sbjct: 232 GCRLIVLHVSNPDG-VELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRS 290
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
A +LWE L +G ID L SDH E K + KA G L+ LP+ + G
Sbjct: 291 AEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGV 350
Query: 407 KYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 464
G ++LE+L E+PAKL G KG + +G+ ADL++ + + + ++D H
Sbjct: 351 NKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQ-FRSLH 409
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
S + G ++G + T+ RG +V ++G G +
Sbjct: 410 K-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-140
Identities = 118/455 (25%), Positives = 194/455 (42%), Gaps = 35/455 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
IVT G+ + IK+G I I + +D + PG IDVH H++
Sbjct: 9 TIVTADGISRADLGIKDGKITQIGGAL-----GPAERTIDAAGRYVFPGGIDVHTHVETV 63
Query: 111 G--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
+ F + T AAA GG TT++D E + A + +D G+
Sbjct: 64 SFNTQSADTFATATVAAACGGTTTIVDFCQQD-RGHSLAEAVAKWDGMAGGKSAIDYGYH 122
Query: 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228
++ LE L + G+ K FM G M + + + L + ++
Sbjct: 123 IIVLDPTDSVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTLDKAVKTGSLVM 179
Query: 229 VHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
VHAE + ++ V E T + + +RPP E A L +A+
Sbjct: 180 VHAENGDAADYLRDKFVA-EGKT----APIYHALSRPPRVEAEATARALALAEIV----- 229
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKCA 341
A ++IVH++ SL+ +M AK+ G ETC HYL + E++ D ++
Sbjct: 230 --NAPIYIVHVT-CEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFT 286
Query: 342 PPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPV 400
PP R + + LW AL +G + +SSDH K +F G ++ L +
Sbjct: 287 PPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMM 346
Query: 401 TWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHP 459
+ + ++L Q + RPAK+ G KG IA+G+ AD+V+W+PEAE ++
Sbjct: 347 VYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTA- 405
Query: 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+H S+Y G ++ G + RG ++ EG+
Sbjct: 406 MHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGS 439
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 395 bits (1018), Expect = e-134
Identities = 120/457 (26%), Positives = 205/457 (44%), Gaps = 36/457 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+VT V I +++I S+ +V+D ++PG ID H HLD P
Sbjct: 9 TVVTASDTYQADVLIDGEKVVAIGSDLQAT----DAEVIDATGYYLLPGGIDPHTHLDMP 64
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F +GTKAAA GG T+++D L S + + A + +D GF
Sbjct: 65 FGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTS-KGESLHSAIATWHEKARGKAVIDYGFH 123
Query: 169 GGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ N + LE+++N G+ LK FM M + + + L +
Sbjct: 124 LMVSDANDHVLEELESVVNNEGITSLKVFMAYKN---VLMADDETLFKTLIRAKELGALV 180
Query: 228 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
VHAE ++ +++ + E +T + TRPP E A + +
Sbjct: 181 QVHAENGDVLDYLTKQALA-EGNT----DPIYHAYTRPPEAEGEATGRAIALTALA---- 231
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKC 340
A L++VH+S + ++ + EA+ G ++ ETCP YL + D ++
Sbjct: 232 ---DAQLYVVHVS-CADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVW 287
Query: 341 APPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLP 399
+PP+R+ N++ LW AL +G + + SDH P K L +F K G ++ +
Sbjct: 288 SPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMT 347
Query: 400 VTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDND 457
+ +S G RK ++L Q S + AKL G KG IA+G+ AD+V+++P + + +
Sbjct: 348 ILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVE 407
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
HM + + G ++ G V++ +SRG V +
Sbjct: 408 T-HHMNVD-YNPFEGMQVHGDVISVLSRGAFVVRNKQ 442
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-133
Identities = 113/449 (25%), Positives = 185/449 (41%), Gaps = 30/449 (6%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDD 109
I G+V I I I+ E ++ + +V++ + PG ID H +
Sbjct: 12 LITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFRE 71
Query: 110 PGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG T S ++AA AGG+T+ +DMP N++P T E L K + + GF+
Sbjct: 72 PGLTHKATIASESRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQIGADTAWANYGFFF 130
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
G +N ++ + V GLK F+ S N + + + +
Sbjct: 131 GGTNDNI---DEIKRVDKHLVPGLKLFLGSSTGN----MLVDNKETLEKIFGECDLLIAT 183
Query: 230 HAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285
H E + E + + LD + R + E + +A+
Sbjct: 184 HCEKEEIIRANKEHYKAKYGNDLDIHFHPLI---RSEEACYRSSAEAVELAERM------ 234
Query: 286 EGAHLHIVHLSDASSSLDLL-MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344
A LHI+HLS L L + T IT E C H+L FS + R K P I
Sbjct: 235 -NARLHILHLSTEKE-LSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAI 292
Query: 345 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 404
+ +++E L A+ +G ID++++DH+P + K EG+ L+A G +Q L
Sbjct: 293 KKESDREALRAAVRNGRIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLEL 349
Query: 405 GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 464
+ ++E++ S + PA L +G I G +ADLV+ +P + + D+ +
Sbjct: 350 CNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADN-ILSLC 408
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYKEG 493
S + G S V T G L Y +G
Sbjct: 409 -GWSPFEGFTFSHSVAYTFVNGCLAYAKG 436
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-131
Identities = 102/455 (22%), Positives = 179/455 (39%), Gaps = 26/455 (5%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDD 109
R+V V +++G + ++ + P + G +V+D +++PG ID H H+
Sbjct: 35 RVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQF 94
Query: 110 P--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167
P G + F GTKAA +GG T +ID + ++ E + A+ ++ D
Sbjct: 95 PFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSL-IEAFETWRSWADPKVCCDYSL 153
Query: 168 WGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
+ + ++ L+ + GV K FM D M + E S
Sbjct: 154 HVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYK---DLYMVTDLELYEAFSRCKEIGAI 210
Query: 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
VHAE K T + RP + E A +T+A
Sbjct: 211 AQVHAENGDLIAEGAKKMLALGIT-GPEGHELCRPEAVEAEATLRAITIASAV------- 262
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAP 342
L+IVH+ + S+ ++ +A+ +G + E L + + P
Sbjct: 263 NCPLYIVHVM-SKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGP 321
Query: 343 PIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT 401
P+R D + + L L + + +D+ K L + +F K G++ ++ + V
Sbjct: 322 PLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVI 381
Query: 402 WSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459
W G G + + + S AK+ KG IA+G+ AD+V+W+P+ +
Sbjct: 382 WEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKT- 440
Query: 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
H + + G G L TISRG +VY+ G
Sbjct: 441 HHQAVN-FNIFEGMVCHGVPLVTISRGKVVYEAGV 474
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 386 bits (995), Expect = e-131
Identities = 108/466 (23%), Positives = 189/466 (40%), Gaps = 34/466 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
I+T + + I I + P ++ V+D + PG ID H H+ P
Sbjct: 8 EIITADSRYKADIYAEGETITRIGQNLEAPPGTE---VIDATGKYVFPGFIDPHVHIYLP 64
Query: 111 GRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
+ + +G+KAA GG TT I+M + + E +L AE Y D F
Sbjct: 65 FMATFAKDTHETGSKAALMGGTTTYIEMCCP-SRNDDALEGYQLWKSKAEGNSYCDYTFH 123
Query: 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228
+ + L ++ G+ K F+ F + + + L + +
Sbjct: 124 MAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTLRLAKELGVIVT 180
Query: 229 VHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
H E + + ++ + E T + +RP + E T + T
Sbjct: 181 AHCENAELVGRLQQKLLS-EGKT----GPEWHEPSRPEAVEAEGTARFATFLETT----- 230
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCA 341
GA ++VHLS +LD M AK G I +E+ + G ++ +
Sbjct: 231 --GATGYVVHLS-CKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMS 287
Query: 342 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT 401
PP+RD N++ LW+AL G ID + +DH P E KLL + F GI +++ + +
Sbjct: 288 PPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLL 347
Query: 402 WSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459
++YG + + + + S + AKL G KG IA+G+ ADLVV++P+ +
Sbjct: 348 YTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKT- 406
Query: 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
H+ + + + G + G+ RG + ++G G +
Sbjct: 407 QHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLL 451
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-130
Identities = 113/468 (24%), Positives = 191/468 (40%), Gaps = 40/468 (8%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
IVT V+++ G I+ I N + +D +MPG ID H HL+ P
Sbjct: 9 TIVTADLTYKADVKVEGGRIVEIGP------NLSGAETLDATGCYVMPGGIDPHTHLEMP 62
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F SGT+AA AGG T ++D L S P E L + + + + D F
Sbjct: 63 FMGTYSSDDFESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMWDNKSTRA-NCDYSFH 120
Query: 169 GGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ + +E ++ + G+ K FM G M + + A
Sbjct: 121 MAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGA---LMVDDDEMFSSFQRCAALGALP 177
Query: 228 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
LVHAE + + + + E ++ + +RP E A + +A
Sbjct: 178 LVHAENGDVVAQLQAKLLA-EGNS----GPEAHAYSRPAEVEGEAANRAIMIADMA---- 228
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFK 339
G ++IVH S + + + A+ G + E +L E D D R
Sbjct: 229 ---GCPVYIVHTS-CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRV 284
Query: 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399
+PP R+ +++ LW L G + ++++DH E K G+F + G L+ +P
Sbjct: 285 MSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMP 344
Query: 400 VTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDND 457
+ W+YG G +T+ + + S AK+ KGAI +G ADLVVW+P+ +
Sbjct: 345 MLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAK 404
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
+ + G+ ++G T++RG + +EG G +
Sbjct: 405 T-QQSAID-YNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFV 450
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-127
Identities = 104/458 (22%), Positives = 175/458 (38%), Gaps = 36/458 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-- 108
+IV + +++G I I P K ++ +++PG IDVH
Sbjct: 34 KIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVK---TIEAHSRMVIPGGIDVHTRFQMP 90
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
D G T + F GTKAA AGG T +ID + +P T + A+ + D
Sbjct: 91 DQGMTSADDFFQGTKAALAGGTTMIIDHVVP-EPGTSLLAAFDQWREWADSKSCCDYSLH 149
Query: 169 GGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ + +EAL+ + GV +M D I E LSV+
Sbjct: 150 VDISEWHKGIQEEMEALVKDHGVNSFLVYMAFK---DRFQLTDCQIYEVLSVIRDIGAIA 206
Query: 228 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
VHAE + + +R + L ++ +RP E A+ +T+A T
Sbjct: 207 QVHAENGDIIAEEQQRILDLGIT-----GPEGHVLSRPEEVEAEAVNRAITIANQT---- 257
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFK 339
L+I + + SS +++ +A+ G + E L + F
Sbjct: 258 ---NCPLYITKVM-SKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFV 313
Query: 340 CAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398
+PP+ D + L L G + + S H K + + NF G + + +
Sbjct: 314 TSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERM 373
Query: 399 PVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDN 456
V W G + Q + S AK+ KG IA+G+ ADLV+W+P++ +
Sbjct: 374 SVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISA 433
Query: 457 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ + + G G L IS+G +V ++G
Sbjct: 434 KT-HNSSLE-YNIFEGMECRGSPLVVISQGKIVLEDGT 469
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 376 bits (968), Expect = e-126
Identities = 96/457 (21%), Positives = 172/457 (37%), Gaps = 34/457 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+V V ++ G I I + + +VVD + +++PG ID H H P
Sbjct: 16 TVVNDDRYFKSDVLVENGIIKEISKNIEPK---EGIKVVDATDKLLLPGGIDTHTHFQLP 72
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F GT+AA AGG T +ID + E A++++ D
Sbjct: 73 FMGTVSVDDFDIGTQAAVAGGTTFIIDFVIP-TRGQSLLEAYDQWKKWADEKVNCDYSLH 131
Query: 169 GGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ + + +E L+ GV K FM M +
Sbjct: 132 VAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSF---MVTDQEMYHIFKRCKELGAIA 188
Query: 228 LVHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
VHAE M ++ + T + +RP + E A + +A
Sbjct: 189 QVHAENGDMVFEGQKKMLEMGIT----GPEGHELSRPEALEAEATNRAIVIADSV----- 239
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKC 340
++IVH+ + + D++ + + G + E L + + D F
Sbjct: 240 --CTPVYIVHVQ-SIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVM 296
Query: 341 APPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399
PPIR D K L + L G +D + +D+ + K + + +F K G++ ++ +
Sbjct: 297 GPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMS 356
Query: 400 VTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDND 457
+ W G +T Q S A++ KG I +G D+V+W+P + D
Sbjct: 357 IVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKD 416
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
H + + G +++G + TI GN+V+ +
Sbjct: 417 T-HHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNK 451
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 342 bits (880), Expect = e-112
Identities = 111/528 (21%), Positives = 192/528 (36%), Gaps = 95/528 (17%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
I T + + + + G + I + D S+ V+D A I PG ID H H+D+P
Sbjct: 11 IICTASDIYAAEIAVNNGKVQLIAASIDPSLGSE---VIDAEGAFITPGGIDAHVHVDEP 67
Query: 111 GRTEWEG---FPSGTKAAAAGGITTLIDMPLN----SDPSTISTETLKLKVDAAEKRIYV 163
+ + T++A AGG TT++ PS ++ + +E+ +Y
Sbjct: 68 LKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYC 127
Query: 164 DVGFWGGLVPENAYNASALE--------ALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 215
D G L + A E A + GV +K FM G+ + I
Sbjct: 128 DYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGL----QISDYDIMS 183
Query: 216 GLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
+ + ++HAE ++ E + + T + +RP E A
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEE-QGLT----DAYYHGVSRPSIVEGEATNR 238
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-- 329
+T+A + VH+S + + +++ +A+T G + ETCP Y S
Sbjct: 239 AITLATTM-------DTPILFVHVS-SPQAAEVIKQAQTKGLKVYAETCPQYALLSDAIT 290
Query: 330 ----------------------------EIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361
+ +++ C+PPIR ++ +W+ + +G
Sbjct: 291 RCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGT 350
Query: 362 IDMLSSDHSPTVPELK-------------LLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 408
++ SDH K G F G+ + +P+ + YG
Sbjct: 351 FTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLR 410
Query: 409 G--VTLEQLASWWSERPAKLAG-QVSKGAIAIGN-HADLVVWEPEAEFELDNDHPV---- 460
G ++ +L PAK+ G KG+I G ADLV+W P+ + N P
Sbjct: 411 GNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITN 470
Query: 461 ---HMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
+ + G + TI +G +VYKEG A G +
Sbjct: 471 KLMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYL 517
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 5e-78
Identities = 107/465 (23%), Positives = 193/465 (41%), Gaps = 71/465 (15%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+++ + + I I I + ++D + PG +DVH HL +P
Sbjct: 8 KVLQNGELQQADILIDGKVIKQIAPAIEPSNGV---DIIDAKGHFVSPGFVDVHVHLREP 64
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV----- 165
G E +GTKAAA GG TT+ MP N+ P S E + + V V
Sbjct: 65 GGEYKETIETGTKAAARGGFTTVCPMP-NTRPVPDSVEHFEALQKLIDDNAQVRVLPYAS 123
Query: 166 ---GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLA 221
G + + AL+ G +D + AS + EG+ A
Sbjct: 124 ITTRQLGKELVD-------FPALVKEGAFAFT--------DDGVGVQTASMMYEGMIEAA 168
Query: 222 RYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEEAAI-REL 272
+ + ++ H E D++L RS + P E I R++
Sbjct: 169 KVNKAIVAHCE------------DNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDV 216
Query: 273 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332
L +A+ G H H+ H+S S + ++ +AK G +T E PH+L + ++IP
Sbjct: 217 L-LAEAA-------GCHYHVCHVSTKES-VRVIRDAKRAGIHVTAEVTPHHLLLTEDDIP 267
Query: 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 392
+ +K PP+R ++E L E L+DG ID +++DH+P + K KA GI
Sbjct: 268 GNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQP---MEKAPFGIV 324
Query: 393 SLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
+ P+ +++ + TL+QL + + +P + + G + +ADL + + ++E
Sbjct: 325 GSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFN-LEYGTLKENGYADLTIIDLDSE 383
Query: 452 FELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 493
E+ + S + ++G ++ G + T+ G + ++
Sbjct: 384 QEIKGE-----DFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGD 423
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 2e-77
Identities = 119/473 (25%), Positives = 202/473 (42%), Gaps = 73/473 (15%)
Query: 45 YWLTSKRIVTPKGVISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y + R + +G I + +++G I + + +V+D +I PGL+DV
Sbjct: 3 YLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT----ADNAEVIDVNGKLIAPGLVDV 58
Query: 104 HAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H HL +PG E +GT AAA GG TT+ MP N+ P E ++ + +++ +V
Sbjct: 59 HVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHV 117
Query: 164 DV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIK 214
+V G + + E L G +D + +AS +
Sbjct: 118 NVLPYGAITVRQAGSEMTD-------FETLKELGAFAFT--------DDGVGVQDASMML 162
Query: 215 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEE 266
+ A+ ++ H E ++TL S L P E
Sbjct: 163 AAMKRAAKLNMAVVAHCE------------ENTLINKGCVHEGKFSEKHGLNGIPSVCES 210
Query: 267 AAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325
I R++L +A+ H H+ H+S S + ++ +AK G +T E PH+L
Sbjct: 211 VHIARDIL-LAEAA-------DCHYHVCHVSTKGS-VRVIRDAKRAGIKVTAEVTPHHLV 261
Query: 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 385
++IP D FK PP+R + E L E L+DG IDM+++DH+P E K
Sbjct: 262 LCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQG---IE 318
Query: 386 KAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 444
+A GI+ + P+ ++ +K +TLEQL + +E+PA G + G + G AD+
Sbjct: 319 RAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRTADIT 377
Query: 445 VWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEGN 494
+ + E E E+D S + G + G + TI G + +++ +
Sbjct: 378 IIDLEQEEEIDPT-----TFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 3e-76
Identities = 121/464 (26%), Positives = 207/464 (44%), Gaps = 73/464 (15%)
Query: 51 RIVTPKGVIS--GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
++ P + + ++ G I I +++D ++ PG ID+H HL
Sbjct: 55 YVIDPSQNLEGEFDILVENGKIKKIDKNIL----VPEAEIIDAKGLIVCPGFIDIHVHLR 110
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--- 165
DPG+T E SG++ A AGG TT++ MP N++P +T + + ++ V
Sbjct: 111 DPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPT 169
Query: 166 -----GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSV 219
G G + + +L AG + +D P+ ++S +++ L +
Sbjct: 170 GTITKGRKGKEIAD-------FYSLKEAGCVAFT--------DDGSPVMDSSVMRKALEL 214
Query: 220 LARYKRPLLVHAEMEKGSERHVKLEDDTL-------DTRSYSTYLKTRPPSWEEAAI-RE 271
++ P++ H E DD L S L +R P EE I R+
Sbjct: 215 ASQLGVPIMDHCE------------DDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARD 262
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331
+ +A+ T G H+HI H+S S L+++ K G IT E P++L F+ E+
Sbjct: 263 GI-LAQRT-------GGHVHIQHVSTKLS-LEIIEFFKEKGVKITCEVNPNHLLFTEREV 313
Query: 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 391
+ + PP+R ++ L E + G ID ++DH+P K L A GI
Sbjct: 314 LNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGI 369
Query: 392 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
LQ LP RK ++L++L ++ PA++ G V G + +G+ AD+ +++P E
Sbjct: 370 IGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADITIFDPNKE 428
Query: 452 FELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKE 492
+ L+ + + S S G+ L GKV+ TI G +VYK+
Sbjct: 429 WILNEE-----TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 238 bits (610), Expect = 1e-73
Identities = 127/471 (26%), Positives = 195/471 (41%), Gaps = 71/471 (15%)
Query: 46 WLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
+ + R+V +G V I EG I+S+ E QVVD + PG +D+H
Sbjct: 3 LIRNVRLVDARGERGPADVLIGEGRILSLEGGEA-------KQVVDGTGCFLAPGFLDLH 55
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164
AHL +PG E SG AA GG T L+ MP N+ P + E ++ + A+
Sbjct: 56 AHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEKAKALGLAR 114
Query: 165 V--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKE 215
+ G + L AG + L +D +A +
Sbjct: 115 LHPAAALTEKQEGKTLTP-------AGLLREAGAVLLT--------DDGRTNEDAGVLAA 159
Query: 216 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR------SYSTY--LKTRPPSWEEA 267
GL + A P+ VHAE D L + L PP E A
Sbjct: 160 GLLMAAPLGLPVAVHAE------------DAGLRRNGVMNDGPLADLLGLPGNPPEAEAA 207
Query: 268 AI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326
I R+L + R LH+ HLS L+L+ EAK G +T E PH+L
Sbjct: 208 RIARDLEVLRYALRR--SPATPRLHVQHLSTKRG-LELVREAKRAGLPVTAEATPHHLTL 264
Query: 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 386
+ E + D FK APP+R ++E L E L+DG +D +++DH+P K D L+
Sbjct: 265 TEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKD---LLR 321
Query: 387 AWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 445
A GI SL+ P+ ++ K G L++L +++ P ++ G + + G A LV+
Sbjct: 322 APFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEEGAEASLVL 380
Query: 446 WEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 493
P+ E +D S + + G L G + T+ G +V++
Sbjct: 381 LSPK-ERPVDPS-----AFASKARYSPWAGWVLGGWPVLTLVAGRIVHEAL 425
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 61/448 (13%), Positives = 127/448 (28%), Gaps = 87/448 (19%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+ P+ V + G II++ S VVD ++ PG ID H HL
Sbjct: 16 HLYAPEDRGICDVLVANGKIIAVASNIPSD-IVPNCTVVDLSGQILCPGFIDQHVHLIGG 74
Query: 111 GRTEWEGFPSGTKAAAA---GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167
G + A + G+T+++ + +D + E+L K A +
Sbjct: 75 GGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWML 133
Query: 168 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
G + ++E + + + + A + ++ A +
Sbjct: 134 TGAYHVPSRTITGSVEKDVAI----IDRVIGVKCAISDHRSAAPDVYHLANMAAESRVGG 189
Query: 228 LVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287
L+ K + D + A++ + + ++
Sbjct: 190 LLG---GKPGVTVFHMGD-------------------SKKALQPIYDLLENCDV----PI 223
Query: 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347
+ L H++ + +E G +I + + P+ A
Sbjct: 224 SKLLPTHVNRNVPLFEQALEFARKGGTIDITS-------------------SIDEPVAPA 264
Query: 348 -ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
+ + + + S + + G++ + +L +
Sbjct: 265 EGIARAVQAGIPLARVTLSSDGNGSQP-----FFDDEGNLTHIGVAGFETLLETVQVLVK 319
Query: 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 466
Y ++ + A KG I GN ADL+V PE
Sbjct: 320 DYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELR--------------- 364
Query: 467 ISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ +RG L+ K+G
Sbjct: 365 ------------IEQVYARGKLMVKDGK 380
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 57/468 (12%), Positives = 120/468 (25%), Gaps = 106/468 (22%)
Query: 51 RIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+IV+ + + + +++G I +I EE ++D + + PGL+D H H
Sbjct: 11 KIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDA-TIIDAAGSTVTPGLLDTHVH 69
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS----TETLKLKVDAAEKRIY 162
+ + +A GG+TT+I P K K Y
Sbjct: 70 VSGGDYAPRQKTMDFISSALHGGVTTMISAG---SPHFPGRPKDAAGTKALAITLSKSYY 126
Query: 163 VDV-----GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 217
G ++ E + GV + I + +
Sbjct: 127 NARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVG-LGTIKNPED-----AAPMV 180
Query: 218 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277
++ + +H DD + T+ P +++E+ +
Sbjct: 181 EWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHINGGP--TAISVQEVDRIMD 238
Query: 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 337
+T + IV + + + A G + F +
Sbjct: 239 ET-------DFAMEIVQCGNPKIADYVARRAAEKG-------QLGRVIFGNDAPSGTG-- 282
Query: 338 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 397
+ G + ++
Sbjct: 283 ------------------LIPLGILRN----------MCQIA------------------ 296
Query: 398 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 457
+ E + + G ++ G IA G ADL++ +D
Sbjct: 297 --------SMSDIDPEVAVCMATGNSTAVYG-LNTGVIAPGKEADLII--------MDTP 339
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505
+ + G + + G V + + P A + +
Sbjct: 340 LGSVAEDAMGAIAAGDIPG--ISVVLIDGEAVVTKSRNTPPAKRAAKI 385
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 82/448 (18%), Positives = 143/448 (31%), Gaps = 77/448 (17%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------M 97
LT+ I+ G+ + +K+G I+ I D +V VI
Sbjct: 71 LTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVT 130
Query: 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET------LK 151
G ID H H + P A A GITTL + +T ++
Sbjct: 131 AGGIDTHVHFIN---------PDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIE 181
Query: 152 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 211
+ + E + ++VG G + + + + ++AG GLK D+ T A
Sbjct: 182 KMLKSTE-GLPINVGILGKG---HGSSIAPIMEQIDAGAAGLKIHE------DWGATPA- 230
Query: 212 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
I L+V + +H++ + +DTL + E A
Sbjct: 231 SIDRSLTVADEADVQVAIHSD----TLNEAGFLEDTLRAINGRV---IHSFHVEGAGGGH 283
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-- 329
+ G + ++ + + E +
Sbjct: 284 APDIMAMA-------GHPNVLPSSTNP---------TRPFTVNTIDEHLDMLMVCHHLKQ 327
Query: 330 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 389
IP+ D F + + E + L G I M+S+D + E L+ W
Sbjct: 328 NIPE-DVAFADSRIRPETIAAEDILHDL--GIISMMSTDALA----MGRAGE-MVLRTWQ 379
Query: 390 GISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWE 447
++ L++ S ++ PA G G+I G ADLV+WE
Sbjct: 380 TADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWE 439
Query: 448 PE-----AEFELDNDHPVH--MKHPSIS 468
P+ A+ + + + PS S
Sbjct: 440 PKFFGVKADRVIKGGIIAYAQIGDPSAS 467
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 93.7 bits (232), Expect = 6e-21
Identities = 74/458 (16%), Positives = 131/458 (28%), Gaps = 106/458 (23%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+ V + IKE I ++ + + + G ID H H +
Sbjct: 13 QTVNGM---PVEIAIKEKKIAAVAATISGSAKE---TIHLEPGTYVSAGWIDDHVHCFEK 66
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170
++ + G+TT+ID + I + V++ WG
Sbjct: 67 MALYYD---YPDEIGVKKGVTTVIDAG-TTGAENIHEFYDLAQQAKTNVFGLVNISKWGI 122
Query: 171 LVPENAYNASALEALLNA--------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
+ + + S ++A L V+G+K+ M + I D +T K+
Sbjct: 123 VAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQI--QQEN 180
Query: 223 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282
+ PL+VH + PP +E I L+ K
Sbjct: 181 QEIPLMVHIG--------------------------SAPPHLDE--ILALM--EKGDVLT 210
Query: 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAP 342
G I+ + D +A G + + +F+
Sbjct: 211 HCFNGKENGILDQATD-KIKDFAWQAYNKG--VVFDIGHGTDSFNFHVA----------- 256
Query: 343 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402
AL +G D + G + L T
Sbjct: 257 -----------ETALREG-----------MKAASISTDIYIRNRENGPVYD----LATTM 290
Query: 403 SYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462
R G ++ ++ PA+ KG + IG ADL ++ +AE + D
Sbjct: 291 EKLRVVGYDWPEIIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKTLTD----- 345
Query: 463 KHPSISAYLGRRLSG----KVLATISRGNLVYKEGNHA 496
G + + TI G + EG+H
Sbjct: 346 -------SNGLTRVAKEQIRPIKTIIGGQIYDNEGHHH 376
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 9e-20
Identities = 86/431 (19%), Positives = 135/431 (31%), Gaps = 88/431 (20%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------M 97
+T+ IV G+ + IK+G I I D K V +
Sbjct: 70 ITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVT 129
Query: 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETLK 151
G ID H H P A A G+TT+I T +T LK
Sbjct: 130 AGGIDTHIHFIS---------PQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
Query: 152 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 211
+ AAE+ +++GF NA N ++L + AG +G K D+ T S
Sbjct: 181 WMLRAAEE-YSMNLGFLA---KGNASNDASLADQIEAGAIGFKIHE------DWG-TTPS 229
Query: 212 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
I L V +Y + +H DTL+ EA E
Sbjct: 230 AINHALDVADKYDVQVAIH--------------TDTLN----------------EAGCVE 259
Query: 272 LLTVAKDTR------TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325
A R T+G G I+ ++ + L T ++ E +
Sbjct: 260 DTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAS-TNPTIPFTVNTEAEHMDML 318
Query: 326 FSAE----EIPDGDTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 380
I + D +F + A ++ L + G + SSD
Sbjct: 319 MVCHHKDKSIKE-DVQFADSRIRPQTIAAEDTLHD---MGAFSITSSDSQA-----MGRV 369
Query: 381 EGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVS-KGAIAIG 438
+ W + +++ S ++ PA G G++ +G
Sbjct: 370 GEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVG 429
Query: 439 NHADLVVWEPE 449
ADLV+W P
Sbjct: 430 KVADLVLWSPA 440
|
| >1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 4e-16
Identities = 81/422 (19%), Positives = 138/422 (32%), Gaps = 72/422 (17%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI-------MPG 99
LT+ IV G++ + +K+G I +I + + VI G
Sbjct: 70 LTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAG 129
Query: 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID---MPLNSDPSTISTE--TLKLKV 154
ID H H P + E A G+TT++ P +T T ++
Sbjct: 130 GIDTHIHWICPQQAEE---------ALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 155 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 214
A + V++G G N AL + AGV+GLK + I
Sbjct: 181 LQAADSLPVNIGLLGKG---NVSQPDALREQVAAGVIGLKIHEDWGATP-------AAID 230
Query: 215 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 274
L+V + +H++ + +DTL T +++T
Sbjct: 231 CALTVADEMDIQVALHSD----TLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIIT 286
Query: 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334
P L +++D ++ C H AE++
Sbjct: 287 ACAH-----PNILPSSTNPTLPYTLNTIDEHLDMLM--------VCHHLDPDIAEDVAFA 333
Query: 335 DTRFKCAPPIRDAANKEKLWEALMD-GHIDMLSSDHSP--TVPELKL--LDEGNFLKAWG 389
++R + + L D G + SSD V E+ L + +K
Sbjct: 334 ESRIRRETIAA--------EDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQR 385
Query: 390 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK--GAIAIGNHADLVVWE 447
G L G +++ + ++ PA G ++ G+I +G ADLVVW
Sbjct: 386 GA------LAEE--TGDNDNFRVKRYIAKYTINPALTHG-IAHEVGSIEVGKLADLVVWS 436
Query: 448 PE 449
P
Sbjct: 437 PA 438
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 3e-14
Identities = 67/460 (14%), Positives = 130/460 (28%), Gaps = 98/460 (21%)
Query: 51 RIVTPKGVISGAVE----IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ V S + +G I ++ S P + Q +D A I PG +D+H H
Sbjct: 23 KPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPAD---TQRIDAKGAFISPGWVDLHVH 79
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166
+ G + ++ A G+TTL+D + + + ++ + +RI
Sbjct: 80 IWHGGT---DISIRPSECGAERGVTTLVDAGSAGEANF--HGFREYIIEPSRERIK---- 130
Query: 167 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
A LN G +GL + + D + I E + + +
Sbjct: 131 -----------------AFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVG 173
Query: 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
L V A SW ++ +AK
Sbjct: 174 LKVRAS-------------------------HVITGSWGVTPVKLGKKIAKIL------- 201
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
+ VH+ + + D ++E GD +T H + D
Sbjct: 202 KVPMM-VHVGEPPALYDEVLEILGPGDVVT-----HCFNGKSGSSIMEDEDLFNL----- 250
Query: 347 AANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFL-------KAWGGISSLQFVL 398
+G +D+ S + + L ++ + L
Sbjct: 251 ------AERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDL 304
Query: 399 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 458
T S + E + + PA + + + +G AD V++ D
Sbjct: 305 ATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLV-------DA 357
Query: 459 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 498
+ + +RL + + + A
Sbjct: 358 DLEATDSNGDVSRLKRL-FEPRYAVIGAEAIAASRYIPRA 396
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 31/125 (24%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 45 YWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y LT RI T + AV I +G I S+ + P + A++ PG IDV
Sbjct: 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPE---IEQRSLNGAILSPGFIDV 58
Query: 104 HAH-------LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKV 154
+ D E KA G T + P+ I S E +K V
Sbjct: 59 QLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYL-------PTLITTSDELMKQGV 111
Query: 155 DAAEK 159
+
Sbjct: 112 RVMRE 116
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 45 YWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y LT+ +I T V+ AV I I ++ E P VVD A + PG ID+
Sbjct: 5 YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSE---MNVVDLNGANLSPGFIDL 61
Query: 104 HAH----LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 146
+ + E + KA G T+ + P+ I+
Sbjct: 62 QLNGCGGVMFNDEITAETIDTMHKANLKSGCTSFL-------PTLIT 101
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* Length = 347 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 4e-10
Identities = 52/336 (15%), Positives = 98/336 (29%), Gaps = 60/336 (17%)
Query: 102 DVHAHLDDPGRTEWEGFP-SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 160
D H HL R +G + I MP N P + E A +R
Sbjct: 14 DWHLHL----R---DGDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVE----AAVAYRQR 61
Query: 161 I------YVDVGFWGGLVPENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASH 212
I D ++ + + LE N G K + + + +T+
Sbjct: 62 ILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDA 121
Query: 213 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 272
I L + + PLLVH E+ E ++ +
Sbjct: 122 IMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIE--------------------SVM 161
Query: 273 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332
+ + + H++ + D + + + P +L F+ +
Sbjct: 162 EPLRQR------LTALKVVFEHITTKDA-ADYVRDGNER---LAATITPQHLMFNRNHML 211
Query: 333 DGDTR--FKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWG 389
G R C P ++ +++ L E + G L +D +P K G
Sbjct: 212 VGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCA----- 266
Query: 390 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 425
G + L + + L+ ++ S +
Sbjct: 267 GCFNAPTALGSYATVFEEMN-ALQHFEAFCSVNGPQ 301
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 6e-10
Identities = 79/474 (16%), Positives = 136/474 (28%), Gaps = 122/474 (25%)
Query: 51 RIVT-PKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
+ G V + G + + + P ++VD + PG +D H+H+
Sbjct: 13 TVFPITSRPFKGDVLVSNGKVEKVGENIEDP----DAEIVDLTGKFLFPGFVDAHSHI-- 66
Query: 110 PGRTEWEGFPSGT--------------------------KAAAAGGITTLIDMPLNSDPS 143
G E + + A AGG+T+++ +P +++P
Sbjct: 67 -GLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPV 125
Query: 144 TISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203
+K + E+ I V GL G + +
Sbjct: 126 GGQGSVIKFRSIIVEECI---VKDPAGLKM-------------AFGENPKRVYGERKQTP 169
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 263
M A I++ + + Y + + ++G E + + R +
Sbjct: 170 STRMGTAGVIRDYFTKVKNYMKKKELA--QKEGKEFTETDLKMEVGEMVLRKKIPARMHA 227
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323
I + +A++ G +L I H ++A +L E K
Sbjct: 228 HRADDILTAIRIAEEF-------GFNLVIEHGTEAYKISKVLAEKKIP------------ 268
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 383
P R K KL + G + L DH E +
Sbjct: 269 ----VVVGPLLTFRTKLELKDLTMETIAKLLKD---GVLIALMCDHPVIPLEFATVQAAT 321
Query: 384 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHAD 442
+ +YG E L + PAK+ G + G+I G AD
Sbjct: 322 AM---------------------RYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDAD 360
Query: 443 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496
LVVW + HP MK V G V++ H
Sbjct: 361 LVVW---------SGHPFDMKS-------------VVERVYIDGVEVFRREGHH 392
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 43 NQYWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101
+ IVT VI G V I +G I ++ +E P+ + ++ ++V++PG+I
Sbjct: 3 ESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTER--PKEPYSKEIQAPADSVLLPGMI 60
Query: 102 DVHAH------LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 146
D+H H D + + G T+ + +TI+
Sbjct: 61 DIHIHGGYGADTMDA---SFSTLDIMSSRLPEEGTTSFL-------ATTIT 101
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM 97
L + + SK + + +I + I+ G I I N+K V+ + +++
Sbjct: 3 LTSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIG-----KINTKDATVISIPDLILI 57
Query: 98 PGLIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
PGL+D H H+ +D E S G TT+ ++
Sbjct: 58 PGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNV 107
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 40 LPYNQYWLTSKRIVTPKG--VISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI 96
+ + + ++ P ++ G + I++G I + + N V+D I
Sbjct: 1 MSLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSN---AHVIDVKGKTI 57
Query: 97 MPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
MPGLID+H H+ + P+ A G TT+ D
Sbjct: 58 MPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDA 108
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 26/116 (22%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ I+TP+ +I + I +I + E+ + V ++++PG + H H
Sbjct: 4 IKPFAILTPQTIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLH 63
Query: 107 L---------DDPGRTEW--------EG-FPS----GTKAAAA----GGITTLIDM 136
L W E P + + G T + +
Sbjct: 64 LEFSANKATLQYGDFIPWLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAI 119
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 9e-08
Identities = 72/520 (13%), Positives = 132/520 (25%), Gaps = 145/520 (27%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120
V ++ I ++ + +D V+ PG ID H H D
Sbjct: 41 ADVGVRGDRIAAVGDLSASS----ARRRIDVAGKVVSPGFIDSHTHDD--NYLLKHR--- 91
Query: 121 GTKAAAAGGITTLID------------------MPLNSDPSTISTETLKLKVDAAEKRIY 162
+ G+TT++ + L + + ++A
Sbjct: 92 DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPP 151
Query: 163 VDVGFWGGLVPENAYNASA-------------------LEALLNAGVLGLKSFMCPSGIN 203
+V + A+ + L +G +G +G
Sbjct: 152 A--VNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIG-----ISTGAF 204
Query: 204 DFPMTNASH--IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRP 261
P +AS I E L + H E
Sbjct: 205 YPPAAHASTEEIIEVCRPLITHGGVYATHMRDE--------------------------- 237
Query: 262 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS--------LDLLMEAKTNGD 313
A+ E + ++ + I H L L+ A + D
Sbjct: 238 GEHIVQALEETFRIGREL-------DVPVVISHHKVMGKLNFGRSKETLALIEAAMASQD 290
Query: 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG------HIDMLSS 367
++++ P Y+A S D E L + +
Sbjct: 291 -VSLDAYP-YVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVP 348
Query: 368 DHSPTVPELKLLDEGNFLKAWG---------GISSLQFVLPVTWS--------YGRKYGV 410
+ P ++DE + + G+ + P W Y R G+
Sbjct: 349 ELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGTFPRVLGHYSRDLGL 408
Query: 411 -TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE-----AEFELDNDHPVHMKH 464
LE + A G +G + G +ADLVV++P A FE + +
Sbjct: 409 FPLETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVFDPATVADSATFEHPTERAAGIHS 468
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504
G V+++ + G +
Sbjct: 469 -----------------VYVNGAAVWEDQSFTGQHAGRVL 491
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 28/116 (24%)
Query: 46 WLTSKRIVTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
LT + T G G V + + + ++ R + AVI P ++
Sbjct: 40 LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDE-LRRQYPHAAEERAGAVIAPPPVNA 98
Query: 104 HAHLD-------------------DPGRTEWEGFPSGTKAAAA----GGITTLIDM 136
H HLD GR + +A A G + D+
Sbjct: 99 HTHLDMSAYEFQALPYFQWIPEVVIRGRHLRG--VAAAQAGADTLTRLGAGGVGDI 152
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 73/470 (15%), Positives = 136/470 (28%), Gaps = 153/470 (32%)
Query: 15 TLLAASLFLLVFKDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVI--------------S 60
T +A V + + +WL K +P+ V+ +
Sbjct: 164 TWVALD----VCLSYKVQCK-----MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-WEGFP 119
+ + I S + R + Y + L+ L + + W F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCL----LV-----LLNVQNAKAWNAFN 263
Query: 120 SGTK----------AAAAGGITT----LIDMP---------------LNSDPSTISTETL 150
K TT L L+ P + E L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 151 K-----LKVDAAEKRIYVDV-GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 204
L + A R + W N L ++ + + L+ P+
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLE----PAEYRK 373
Query: 205 -------FPMTNASHIKEG-LSVL---ARYKRPLLVHAEMEKGS--ERHVKLEDDTLDTR 251
FP ++HI LS++ ++V ++ K S E+ K ++
Sbjct: 374 MFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--- 428
Query: 252 SYSTYLKTRPPSWEEAAI-RELL-------TVAKDTRTDGPAEG-AHLHIV-HLSDASSS 301
S YL+ + E A+ R ++ T D + + HI HL +
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 302 ----------LDL-LMEAKTNGDSI----------TVETCPHYLAFSAEEIPDGDTRFKC 340
LD +E K DS T++ Y + I D D ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKY-- 541
Query: 341 APPIRDAANKEKLWEALMD-----GHIDMLSSDHSPTVPELKLLDEGNFL 385
E+L A++D +++ S ++ + + L+ E +
Sbjct: 542 ----------ERLVNAILDFLPKIEE-NLICSKYTDLL-RIALMAEDEAI 579
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPG 99
L ++ + + V I I+ + N Q +D +MPG
Sbjct: 4 TITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPN---AQAIDVRGKTVMPG 60
Query: 100 LIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
ID H H+ + P+ A + G T++ D
Sbjct: 61 FIDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSRGFTSVRDA 108
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 32/122 (26%)
Query: 47 LTSKRIVT--PKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
+ + +V P V+ AV + G I++++ D + V +A +MPGL++
Sbjct: 18 IEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVN 77
Query: 103 VHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----GGITTLI 134
H H DD W E GT A A GG T +
Sbjct: 78 AHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVN 137
Query: 135 DM 136
+
Sbjct: 138 EN 139
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 33/127 (25%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDP- 110
G + + +G I + E ++ + +I+PG ID H HL +
Sbjct: 36 GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGAYGEQL 95
Query: 111 -----GRT--EWEGFPS------GTKAAAA----GGITTLIDMPLNSDPSTISTETLKLK 153
E + G K G TT ++ S +
Sbjct: 96 LPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAF------TSSSPVATEEL 149
Query: 154 VDAAEKR 160
+ A +R
Sbjct: 150 FEEASRR 156
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL 100
++ + + +++ K V S + +GNIIS + + ++ +D + ++PGL
Sbjct: 7 SKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGL 65
Query: 101 IDVHAHL---DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
+D+H H +A A G TT+ +
Sbjct: 66 MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQV 113
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-07
Identities = 84/451 (18%), Positives = 139/451 (30%), Gaps = 83/451 (18%)
Query: 51 RIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
I+ G + +++G I +I P D ++ PG IDVH H D
Sbjct: 15 WIIDGTGAPRRRADLGVRDGRIAAIGELGAHP----ARHAWDASGKIVAPGFIDVHGHDD 70
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDM-----------------PLNSDPSTISTETLK 151
+ + + GITT++ L T +
Sbjct: 71 LMFVEKPDLRWK-----TSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVP 125
Query: 152 LKVDAAEKR-IYVDVGFWGGLVPENAYNASA-------------------LEALLNAGVL 191
A + + ++V LV +A L+A L AG +
Sbjct: 126 AYFAALDAQRPMINVAA---LVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGAV 182
Query: 192 GLKSFMCPSGINDFPMTNAS--HIKEGLSVLARYKRPLLVHAEMEKGS-----ERHVKLE 244
G + + P A ++ V A +R H E E + +
Sbjct: 183 GFSTGLAY-----QPGAVAQAAELEGLARVAAERRRLHTSHIRNEADGVEAAVEEVLAIG 237
Query: 245 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDL 304
T S + P +W R L R G ++ SS L
Sbjct: 238 RGTGCATVVSHHKCMMPQNWGR--SRATLANIDRAREQGVEVALDIY----PYPGSSTIL 291
Query: 305 LMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID- 363
+ E D I + + S E + D R+ C AA + A+ +
Sbjct: 292 IPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKT--TAARRLAPAGAIYFAMDED 349
Query: 364 ----MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASW 418
+ + D + WG S VL Y R+ + TLEQ +
Sbjct: 350 EVKRIFQHPCCMVGSDGLPNDARPHPRLWG---SFTRVLG---RYVREARLMTLEQAVAR 403
Query: 419 WSERPAKLAGQVSKGAIAIGNHADLVVWEPE 449
+ PA++ G +G + G AD+VV++P+
Sbjct: 404 MTALPARVFGFAERGVLQPGAWADVVVFDPD 434
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 51 RIVTPK------GVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
T + G++ A+ + EG I ++V +D D ++ PGLID
Sbjct: 13 TPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKG-PYPAHWQDMKGKLVTPGLIDC 71
Query: 104 HAHLDDPGRTEWE------GFPSGTKAAAAGGITTLI 134
H HL G E G P A GGI + +
Sbjct: 72 HTHLIFAGSRAEEFELRQKGVPYAEIARKGGGIISTV 108
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 29 SAKLSHSECSLLPYNQYWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTG- 86
+ + + L N T + G + + ++ G I E D P + T
Sbjct: 7 AKGTATGNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTAD 66
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWE------GFPSGTKAAAAGGITTLID 135
+ D G I P LID H HL G E G A A GGI + +
Sbjct: 67 ETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSVR 121
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 62 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
A+ I +G I ++ +E ++ + +D +PGL D H H+
Sbjct: 25 AIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHV 70
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
V I E I+ + + +++D ++ PGL+D H HL
Sbjct: 38 AVVGIHEQKIVFAGQKGAEAG-YEADEIIDCSGRLVTPGLVDPHTHL 83
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114
+ + I V+ +D ++MPGLI+ H HL G+
Sbjct: 34 MTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPL 87
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 33/122 (27%)
Query: 47 LTSKRIVT--PKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
L IV P GV+ A+ I++G I + E R+ T ++ + ++ PGL++
Sbjct: 12 LLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGAT-EIRELPGMLLAPGLVN 70
Query: 103 VHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----GGITTLI 134
H H DD W + GT+ A A GGIT
Sbjct: 71 AHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFS 130
Query: 135 DM 136
DM
Sbjct: 131 DM 132
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 19/80 (23%)
Query: 28 DSAKLSHSECSLLPYNQYWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTG 86
S K+ H ++ + IV P G VEI+EG I+ + E
Sbjct: 2 GSDKIHHHHHHMI------VEKVLIVDPIDGEFTGDVEIEEGKIVKVEKREC-------- 47
Query: 87 QVVDYGEAVIMPGLIDVHAH 106
V+MPG +D H H
Sbjct: 48 ----IPRGVLMPGFVDPHIH 63
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 33/122 (27%)
Query: 47 LTSKRIVT--PKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
++++ I+T G + + A+ I++G I +I+ D + + ++ + V+MPGLI+
Sbjct: 10 ISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGL-EADERLELPDHVLMPGLIN 68
Query: 103 VHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----GGITTLI 134
+H H DD +W + G+ A GG TT+
Sbjct: 69 LHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTIN 128
Query: 135 DM 136
DM
Sbjct: 129 DM 130
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 4e-06
Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 19/163 (11%)
Query: 51 RIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
+V + + I I S+ QV+D G A + PGLID H H++
Sbjct: 43 TLVDVVTGELRPADIGIVGALIASVHEPASRRDA---AQVIDAGGAYVSPGLIDTHMHIE 99
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
T + A A G+TT++ P + + ++ A E +
Sbjct: 100 SSMIT-PAAY---AAAVVARGVTTIVWDPH-EFGNVHGVDGVRWAAKAIENLPLRAILLA 154
Query: 169 GGLVPENAY--------NASALEALLNAG-VLGLKSFMCPSGI 202
VP +A+ L LL+ + G+ M G+
Sbjct: 155 PSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGV 197
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
+ + +G I S+ + P K ++D+ +I+PG+ D+HAH
Sbjct: 32 SYIVVIDGKIASV--SSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHA 76
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 7e-06
Identities = 67/459 (14%), Positives = 121/459 (26%), Gaps = 88/459 (19%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-- 108
+ V + I II I ++ + +D ++ PG +D H H+D
Sbjct: 13 YLSEKDSVYD--IGIVGDRIIKIEAKIEGT----VKDEIDAKGNLVSPGFVDAHTHMDKS 66
Query: 109 ---DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-----R 160
R T+ AA I + N+ I ++ R
Sbjct: 67 FTSTGERLPKFWSRPYTRDAA---IEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTR 123
Query: 161 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSV 219
+VDV A + E ++ ++ SG + S I++ L +
Sbjct: 124 THVDVDSVAKTKAVEAVLEAKEEL---KDLIDIQVVAFAQSGFFVDLES-ESLIRKSLDM 179
Query: 220 LARYKRPLLVHAEMEKGSERHVKLEDDTLDT-RSYSTYLKTRPPSWEEAAIRELLTVAKD 278
+ E E + D + Y + + + +A+
Sbjct: 180 GCDLVGGVDPAT-RENNVEGSL---DLCFKLAKEYDVDIDYHIHDIGTVGVYSINRLAQK 235
Query: 279 TRT---DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 335
T G +H + + + + K +G ++ +
Sbjct: 236 TIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSSTPPTMPVIKLLEAG 295
Query: 336 TRFKCAPP-IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 394
CA IRD W +G DM+ A L
Sbjct: 296 INLGCASDNIRDF------WVPFGNG--DMVQ-------------------GALIETQRL 328
Query: 395 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 454
+ L + + A++ G I +G ADLVV +
Sbjct: 329 ELKTN----------RDLGLIWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQWA 378
Query: 455 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
D K L I G ++ K+
Sbjct: 379 IIDQA------------------KRLCVIKNGRIIVKDE 399
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 34/141 (24%)
Query: 28 DSAKLSHSECSLLPYNQYWLT---SKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNS 83
+ L + + + + ++ + IK+G I++I + +
Sbjct: 14 QRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPA 73
Query: 84 KTGQVVDYGEAVIMPGLIDVHAHL---------DDPGRTEW---------------EGFP 119
+ +D G+ V+MPG ++ H H DD W
Sbjct: 74 T--ETLDLGQQVLMPGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVK 131
Query: 120 SGTKAAAA----GGITTLIDM 136
GT+ A A G TT DM
Sbjct: 132 QGTELAIAEMIQSGTTTFADM 152
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 34/106 (32%)
Query: 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------D 108
GAVEI+ G I ++ E +D ++MP L + H H +
Sbjct: 16 PFWGAVEIENGTIKRVLQGEV-------KVDLDLSGKLVMPALFNTHTHAPMTLLRGVAE 68
Query: 109 DPGRTEW--------------EGFPSGTKAAAA----GGITTLIDM 136
D EW + GT A GI +DM
Sbjct: 69 DLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDM 114
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 46/167 (27%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL-----------DD 109
+ I I+++ + + +D + +PGLI+ H HL +
Sbjct: 23 ADILIDGPKIVAVGKDLSDRS---VSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLER 79
Query: 110 PGRTEW--------EGFPS-----------GTKAAAA----GGITTLIDMPLNSDPSTIS 146
W G+ +A GGITT+ D P +
Sbjct: 80 VTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQ-HLFFPGATA 138
Query: 147 TETLKLKVDAAEK--------RIYVDVGFWGGLVPENAYNASALEAL 185
+ ++AA R + +G G ++ + +
Sbjct: 139 DSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRVV 185
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 8/109 (7%)
Query: 13 TLTLLAASLFLLVFKDSAKLSHSECSLLPYNQYW----LTSKRIVT--PKGVISGAVEIK 66
+L L S F S + + + + L + I T + I
Sbjct: 2 SLASLPISNFFTFNHQSTLFTKVKNFMGVKHIGDCMKALINGTIYTSFSPVKKVSGLVIS 61
Query: 67 EGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDVHAHLDDPGRT 113
++ R ++ +++D +MP D H HLD+ G +
Sbjct: 62 NERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMS 110
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 50/416 (12%), Positives = 116/416 (27%), Gaps = 64/416 (15%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
+ +++G I +I ++ T +D + +++P ++ H HLD
Sbjct: 26 IHLQDGKISAIDAQSGVM--PITENSLDAEQGLVIPPFVEPHIHLD-------------- 69
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
AG L + L D ++R L
Sbjct: 70 TTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRA-----------------WQTL 112
Query: 183 EALLNAGVLGLKSF--MCPSGINDFPMTNA----SHIKEGLSVLARYKRPLLVHAEMEKG 236
+ + G+ +++ + + + L ++A + +L + E
Sbjct: 113 KWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEAL 172
Query: 237 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 296
E ++L D + + + + ++ + +A+ +H +
Sbjct: 173 LEEALRLGADVVGAIPHFEF----TREYGVESLHKTFALAQKYDR-----LIDVHCDEID 223
Query: 297 DASSS----LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 352
D S + L + G +T +++ K + I AN
Sbjct: 224 DEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMS-GINFVANP-L 281
Query: 353 LWEALMDGHIDMLSSDHSPTVPELK------LLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
+ L V E+ W + + + +
Sbjct: 282 VNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHV 341
Query: 407 KYGVTLEQLASWW---SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459
+ Q+ + A+ + IA GN A+L++ E F+
Sbjct: 342 CQLMGYGQINDGLNLITHHSARTLN-LQDYGIAAGNSANLIILPAENGFDALRRQV 396
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 24/131 (18%), Positives = 35/131 (26%), Gaps = 36/131 (27%)
Query: 38 SLLPYNQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEA 94
S L N + + T V + I I +I + P +VD +
Sbjct: 11 STLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRP----GETIVDATDC 66
Query: 95 VIMPGLIDVHAHL-----------DDPGRTEW--------------EGFPSGTKAAAA-- 127
VI P ++ H HL D T W F +
Sbjct: 67 VIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIEL 126
Query: 128 --GGITTLIDM 136
G T+ D
Sbjct: 127 ARSGCATVADH 137
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 100.0 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 100.0 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 100.0 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 100.0 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 100.0 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 100.0 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 100.0 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 100.0 | |
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 100.0 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 100.0 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 100.0 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 100.0 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 100.0 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 100.0 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 100.0 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 100.0 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 100.0 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 100.0 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 100.0 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 100.0 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 100.0 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 100.0 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 100.0 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 100.0 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 100.0 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 100.0 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 100.0 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 100.0 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 100.0 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 100.0 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 99.98 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 99.98 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 99.97 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 99.97 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 99.97 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 99.97 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 99.97 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 99.97 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 99.96 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 99.96 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.96 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 99.96 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.94 | |
| 3ggm_A | 81 | Uncharacterized protein BT9727_2919; bacillus cere | 99.6 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 99.0 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 98.98 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 98.86 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 98.82 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.76 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.71 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.66 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.66 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 98.53 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.45 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 98.44 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.43 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 98.36 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 98.32 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 98.3 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 98.25 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 98.24 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 98.24 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 98.1 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 98.09 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 98.02 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 98.01 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 97.92 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 97.87 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 97.85 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 97.79 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 97.64 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 97.54 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 97.4 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 97.34 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 97.29 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 97.22 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 96.86 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 95.81 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 95.54 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 94.97 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 94.39 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 94.35 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 93.27 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 93.07 | |
| 4inf_A | 373 | Metal-dependent hydrolase; amidohydrolase, metal b | 92.77 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 92.06 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 88.21 |
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=475.43 Aligned_cols=441 Identities=24% Similarity=0.336 Sum_probs=386.3
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC--CCCCChhHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSG 121 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~--~~~~~~~~~ 121 (507)
+++|+|++|+++++..+++|+|+||+|++|++..+ +.++||++|++|+|||||+|+|+..+.. .+.+++...
T Consensus 2 ~~~i~~~~v~~~~~~~~~~v~I~~G~I~~i~~~~~------~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~ 75 (490)
T 3dc8_A 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNLS------GAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFESG 75 (490)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCC------CSEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHH
T ss_pred cEEEEccEEECCCCceeeeEEEECCEEEEeccCCC------CCeEEECCCCEEecCEEeeccccCCCCCCCCCHHHHHHH
Confidence 57999999999998888999999999999997643 4689999999999999999999987655 677889999
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH-HcCCcEEEEcccCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPS 200 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 200 (507)
.+.++++||||+++++ .+.|.....+.+....+.+. +..+++.+++++....++..+++.++. +.|+.+++.|+.+
T Consensus 76 ~~aa~~~GvTtv~~~~-~~~p~~~~~~~~~~~~~~a~-~~~~d~~~~~~~~~~~~~~l~el~~l~~~~G~~~~k~~~~~- 152 (490)
T 3dc8_A 76 TRAALAGGTTMVVDFA-LPSPGQSLLEALTMWDNKST-RANCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAY- 152 (490)
T ss_dssp HHHHHHTTEEEEEEEE-CCC-CCCHHHHHHHHHHHTT-TCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESCS-
T ss_pred HHHHHHcCEEeecccC-CCCCCcCHHHHHHHHHHHhh-cccceeeeEEEEecCcHHHHHHHHHHHHhCCCCEEEEEecC-
Confidence 9999999999999998 66676666777777776666 677888888877765555567888888 8999999998865
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
.+.+..+++++.++++.+++++.++.+|+++...+....... .+++..+...++..+|...+..++.+.+.++++.
T Consensus 153 --~~~~~~~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~-~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~- 228 (490)
T 3dc8_A 153 --KGALMVDDDEMFSSFQRCAALGALPLVHAENGDVVAQLQAKL-LAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMA- 228 (490)
T ss_dssp --TTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHH-HHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHH-
T ss_pred --CCCccCCHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHH-HhcCCCCccccccCCCHHHHHHHHHHHHHHHHHh-
Confidence 334567999999999999999999999999886653221111 1344445566778899999999999999999987
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC----CCceeEcCCCCChhhHHHHHHH
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRFKCAPPIRDAANKEKLWEA 356 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~ 356 (507)
+.++|+.|+++. +.+++++.+++.|+.+++++|||++.++.+.+... ++.++.+||+|...++..++++
T Consensus 229 ------g~~lhi~HvSt~-~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~ 301 (490)
T 3dc8_A 229 ------GCPVYIVHTSCE-QAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAG 301 (490)
T ss_dssp ------TCCEEESSCCSH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHH
T ss_pred ------CCcEEEEeCCCH-HHHHHHHHHHHCCCeEEEEEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHH
Confidence 889999999998 99999999999999999999999999999998876 6889999999999999999999
Q ss_pred HhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 357 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 357 l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
+.+|.+++++||++|+....+..+.++|...+.|+.+++..++.++.. +.+.++|++++++++|.|||++||+ +++|+
T Consensus 302 l~~G~id~i~sDh~p~~~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~ 381 (490)
T 3dc8_A 302 LASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGA 381 (490)
T ss_dssp HHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSC
T ss_pred HhcCCceEEECCCCCCCHHHhhccCCChhhCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 999999999999999999988777778999999999999999999987 5667799999999999999999999 78999
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCccccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPILA 506 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 506 (507)
|++|+.|||++||++..|.++.. .+.++.. ++||.+..+.|.|..||++|++||++|+++... .|++++.
T Consensus 382 l~~G~~ADlvv~d~~~~~~i~~~-~~~s~~~-~sp~~g~~~~g~v~~t~~~G~~v~~~g~~~~~~~~G~~~~~ 452 (490)
T 3dc8_A 382 ILVGADADLVVWDPKRSKTISAK-TQQSAID-YNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRR 452 (490)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTT-TCSSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred cCCCCcCCEEEEecCcceEechh-hccccCC-CCcccCcEEeeEEEEEEECCEEEEECCEEcccCCCceeccC
Confidence 99999999999999999999888 8888888 999999999999999999999999999998654 8999864
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=463.22 Aligned_cols=444 Identities=27% Similarity=0.398 Sum_probs=382.4
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC--CCCCCCChhHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSG 121 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~--~~~~~~~~~~~ 121 (507)
+++|+|++|+|++++.+++|+|+||+|++|++..+. .+.++||++|++|+|||||+|+|+..+ +....+.+...
T Consensus 2 ~~~i~n~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~----~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~ 77 (461)
T 3sfw_A 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQA----TDAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTG 77 (461)
T ss_dssp EEEEESCEEECSSCEEECEEEEETTEEEEEESCCCC----SSCEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHH
T ss_pred cEEEECeEEECCCCcEEEEEEEECCEEEEEeCCCCC----CCCeEEECCCCEEEeeeEEeEeccCcCCCCcccHhHHHHH
Confidence 589999999999888899999999999999987532 267899999999999999999999865 44567788889
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHH-cCCcEEEEcccCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPS 200 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 200 (507)
.+.++++||||+++++ .+.|.....+.+....+.+.....+++..++......++..++++++.+ .|+.+++.++.+
T Consensus 78 ~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ik~~~~~- 155 (461)
T 3sfw_A 78 TKAAAFGGTTSIVDFC-LTSKGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAY- 155 (461)
T ss_dssp HHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHHHHHHHHHHHHTSCCCEEEEESSS-
T ss_pred HHHHHhCCEEEEEccC-CCCCcchHHHHHHHHHHHhhcCcEEEEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEEec-
Confidence 9999999999999987 6666666677777777777777788888877776555667788899988 999999998765
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
.+.+..+++++.++++.+++++.++.+|+++...+........ ..+......+...+|...+..++.+.+.++.+.
T Consensus 156 --~~~~~~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~- 231 (461)
T 3sfw_A 156 --KNVLMADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQAL-AEGNTDPIYHAYTRPPEAEGEATGRAIALTALA- 231 (461)
T ss_dssp --TTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHT-
T ss_pred --CCCcccCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-hcCCCChhHhcccCCHHHHHHHHHHHHHHHHHh-
Confidence 3345689999999999999999999999998776543322221 334445556778899999999999999999976
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC---CCCceeEcCCCCChhhHHHHHHHH
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEAL 357 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~l 357 (507)
+.++|+.|+++. ..++.++.+++.|+.+++++|||++.++.+.+.. .+..++.+||+|...++..+++++
T Consensus 232 ------g~~~hi~H~s~~-~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~Pplr~~~~~~aL~~~l 304 (461)
T 3sfw_A 232 ------DAQLYVVHVSCA-DAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDVLWSAL 304 (461)
T ss_dssp ------TCEEEECSCCSH-HHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGCTTTGGGGGCCSSCCCCTHHHHHHHHHH
T ss_pred ------CCCEEEEecCcH-HHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcCccccCCcEEEcCCCCChHHHHHHHHHH
Confidence 899999999998 9999999999999999999999999999998875 478899999999999999999999
Q ss_pred hcCCeeEEeCCCCCCChhh-hccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 358 MDGHIDMLSSDHSPTVPEL-KLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 358 ~~G~~~~lgtD~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
.+|.+++++||+.++.... +....+.|...+.|+.+++..++.++... ...++|++++++++|.|||+++|+ +++|+
T Consensus 305 ~~G~~~~i~sD~~p~~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~ 384 (461)
T 3sfw_A 305 KNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGT 384 (461)
T ss_dssp HTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSS
T ss_pred hcCCceEEECCCCCCCchhhhhcccCCHhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCc
Confidence 9999999999999998443 32334679999999999999999888754 455699999999999999999999 78999
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCccccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPILA 506 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~~ 506 (507)
|++|+.|||+++|.+.++.++.. .+.++.. ++||.+..+.+.|..||++|++||++|+++... .|++++.
T Consensus 385 l~~G~~Ad~~~~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~~~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~ 455 (461)
T 3sfw_A 385 IAVGSDADIVLFDPTVQRTISVE-THHMNVD-YNPFEGMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKR 455 (461)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTT-TCCSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred cCCCCcCCEEEEcCCCCEEEchH-HcccccC-CCCCCCCEecceEEEEEECCEEEEECCeeccCCCCceEecC
Confidence 99999999999999988888877 7888888 999999999999999999999999999998755 6999874
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-57 Score=464.39 Aligned_cols=445 Identities=35% Similarity=0.616 Sum_probs=376.0
Q ss_pred CCcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChh
Q 010547 40 LPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~ 119 (507)
.++.+++|+|++|+++++..+++|+|+||||++|++..+. ..++||++|++|+|||||+|+|+..++...++.+.
T Consensus 20 ~m~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~-----~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~~~~ 94 (473)
T 3e74_A 20 HMSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGD-----AKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYE 94 (473)
T ss_dssp --CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCC-----EEEEEECTTCEEEECEEEEEECC---------CHH
T ss_pred cCcCCEEEEeeEEECCCCceeeeEEEECCEEEEEcCCCCC-----CCcEEECCCCEEecCEEEEecccCCCCCCcHHHHH
Confidence 4456899999999999988899999999999999986542 26799999999999999999999988777888899
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccC
Q 010547 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP 199 (507)
Q Consensus 120 ~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 199 (507)
...+.++++||||+++++.++.|.....+.+....+.+.....+++..+++..... .+++.++.+.|+.++|.|+.+
T Consensus 95 ~~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~---~~~l~~l~~~G~~~~K~~~~~ 171 (473)
T 3e74_A 95 TGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYN---IDRLHELDEVGVVGFKCFVAT 171 (473)
T ss_dssp HHHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSEEEECEECCTTC---TTTHHHHHHHTCSCEEEEC--
T ss_pred HHHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEEEEEEeecccch---HHHHHHHHHcCCCEEEEeccc
Confidence 99999999999999999856778788888888888888878888998887765543 456777778899999998865
Q ss_pred CCC----CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHH
Q 010547 200 SGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 275 (507)
Q Consensus 200 ~~~----~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 275 (507)
++. +..+..+++.+.++++.+++++.++.+|+++...+... .......+......+...+|...+..++.+.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~-~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~l 250 (473)
T 3e74_A 172 CGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDEL-GEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYL 250 (473)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTCCEEEECSCHHHHHHH-HHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCcccccccCCCCHHHHHHHHHHHHhcCCeEEEEecCHHHHHHH-hhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHH
Confidence 432 34556789999999999999999999999987543321 1111134445556677889999999999999999
Q ss_pred HHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHH
Q 010547 276 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWE 355 (507)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 355 (507)
+++. +.++|+.|+++. ..++.++.+++.|+.+++++|||++.++.+.+...+..++.+||+|...++..+++
T Consensus 251 a~~~-------g~~lhi~Hvst~-~~l~li~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~ 322 (473)
T 3e74_A 251 AKVA-------GCRLHVCHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWE 322 (473)
T ss_dssp HHHH-------TCCEEECSCCSH-HHHHHHHHHHHTTCCEEEEECTHHHHCCHHHHHHHCGGGCCSSCCCCHHHHHHHHH
T ss_pred HHHh-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCeEEEEchHhhhcCHHHHhCCCCcEEEeCCCCCHHHHHHHHH
Confidence 9987 889999999998 99999999999999999999999999999988777888999999999999999999
Q ss_pred HHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHhCCCCCCc
Q 010547 356 ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQVSKGA 434 (507)
Q Consensus 356 ~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~lgl~~~G~ 434 (507)
++.+|++++++||+.++....+ ..+|...+.|+.+++..++.++. ...+.+++++++++++|.|||++||++++|+
T Consensus 323 ~l~~G~~~~i~tDh~p~~~~~k---~~~f~~~~~G~~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~G~ 399 (473)
T 3e74_A 323 KLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGR 399 (473)
T ss_dssp HHHTTCCCEECCCBCCCCTTTT---CSCTTTSCCCBCCGGGHHHHHHHHHTTTTCCCHHHHHHHHTHHHHHHTTCTTSSC
T ss_pred HHhCCCCcEEEeCCCCCCHHHc---ccChhhcCCCcccHHhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCc
Confidence 9999999999999999988776 35799999999999999999887 4567789999999999999999999966899
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEe-cCcccCCCCCccccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK-EGNHAPAACGSPILA 506 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~-~g~~~~~~~~~~~~~ 506 (507)
|++|+.||||++|++..|.++.. .+.++.. ++||.+..+.|.|..||++|++||+ +|+++....|++++.
T Consensus 400 l~~G~~AD~vv~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~~g~~~~~~~G~~~~~ 470 (473)
T 3e74_A 400 IAPGKDADFVFIQPNSSYVLTND-DLEYRHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILK 470 (473)
T ss_dssp CSTTSBCCEEEEESSCCEECCGG-GCCSSSC-CCTTTTCEESCEEEEEEETTEEEEETTTBCCSCCCCCEECC
T ss_pred cCCCCccCEEEEeCCCCEEECHH-HccccCC-CCCCCCCEEeeEEEEEEECCEEEEecCCeEccCCCceeecC
Confidence 99999999999999999998877 7788888 9999999999999999999999999 999998889999874
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=441.71 Aligned_cols=434 Identities=37% Similarity=0.639 Sum_probs=372.0
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeec--CCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCCh
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVS--EEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGF 118 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~--~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~ 118 (507)
++++++|+|++|+++++..+++|+|+||||++|++ ..+. .+.++||++|++|+|||||+|+|+..+.....+++
T Consensus 4 ~~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~ 79 (448)
T 3hm7_A 4 KRFDLIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISS----DDGPAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGF 79 (448)
T ss_dssp -CCSEEEEEEEEECSSCEEEEEEEEETTEEEEEESTTCSCT----TSSCEEECTTCEEEECEEEEEECCCTTTSGGGCCS
T ss_pred CcccEEEEeeEEECCCCceEeEEEEECCEEEEeeCccCCCC----CCCeEEECCCCEEecCEEEeeeccCCCCCCcHhHH
Confidence 34678999999999998888999999999999998 4332 26789999999999999999999998877667788
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEccc
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMC 198 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 198 (507)
....+.++++|||+++++++++.|.....+.+....+.+.....+++..+++..... .+++.++.+.|+.+++.++.
T Consensus 80 ~~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~g~~~~~~~l~ 156 (448)
T 3hm7_A 80 ASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN---IDHLQDLHDGGVIGFKAFMS 156 (448)
T ss_dssp HHHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC---GGGHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC---HHHHHHHHHcCCCEEEEeec
Confidence 899999999999999998755667777788888877777666677887777665443 45677777899999998876
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHh
Q 010547 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 278 (507)
+...+..+..+.+.+.++++.|++++.++.+|+++...+........ .++..+...++..+|...+..++.+.+.++++
T Consensus 157 ~~~~~~~~~~~~~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~ 235 (448)
T 3hm7_A 157 ECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAI-EEQRLTVKDYSEARPIVSELEAVERILRFAQL 235 (448)
T ss_dssp SCSSSSSCCCCHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHH-HTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCccCcCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH-hcCCcChhhccccCCHHHHHHHHHHHHHHHHH
Confidence 65433334568999999999999999999999998765442111111 34455666777889999999999999999998
Q ss_pred hccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHh
Q 010547 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (507)
Q Consensus 279 ~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 358 (507)
. +.++|+.|+++. ..++.++.+++.|+.+++++|||++.++.+.+...+..++.+||+|...++..+++++.
T Consensus 236 ~-------g~~~~i~H~s~~-~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~ 307 (448)
T 3hm7_A 236 T-------CCPIHICHVSSR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLM 307 (448)
T ss_dssp H-------TCCEEECCCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHHHCSTTCCSSCCCCHHHHHHHHHHHH
T ss_pred h-------CCCEEEEeCCCH-HHHHHHHHHHhcCCCEEEEechHHHccCHHHhcCCCCeEEEcCCCCCHHHHHHHHHHHh
Confidence 7 889999999998 99999999999999999999999999999888777889999999999999999999999
Q ss_pred cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CCCCccc
Q 010547 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIA 436 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~ 436 (507)
+|..++++||+.|++...+.. ++|...+.|+.+++..++.++... ...+++++++++++|.|||++||+ +++|+|+
T Consensus 308 ~g~~~~i~tD~~p~~~~~k~~--~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~ 385 (448)
T 3hm7_A 308 AGEIDLISSDHSPSLPQMKTG--KTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQ 385 (448)
T ss_dssp HTCCCEECCCBCCCCGGGGCC--SSTTTSCCCBCCTTTHHHHHHHHTTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCS
T ss_pred cCCccEEEeCCCCCCHHHccc--CCHhhCCCCCccHHHHHHHHHHHHHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCccc
Confidence 999999999999998877643 258889999999999999988754 477899999999999999999999 7899999
Q ss_pred cCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCc
Q 010547 437 IGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 437 ~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
+|+.|||+++|.+.++.++.. .+.++.. ++||.+..+.|.|..||++|++||++|+
T Consensus 386 ~G~~Ad~~~~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~~~G~~v~~~~~ 441 (448)
T 3hm7_A 386 VGAEASFTLIDLNESYTLNAS-DLYYRHP-ISPYVGQRFRGKVKHTICQGKHVYQDHE 441 (448)
T ss_dssp TTSBCCEEEEEEEEEEECCGG-GCCSSSC-CCTTTTCEEEEEEEEEEETTEEEEECC-
T ss_pred CCCcCCEEEEeCCCCEEEChH-hcccccC-CCCCCCCEEEEEEEEEEECCEEEEECCC
Confidence 999999999999988988877 7788888 9999999999999999999999999875
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-54 Score=434.99 Aligned_cols=421 Identities=24% Similarity=0.380 Sum_probs=360.9
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHHH
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 124 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~ 124 (507)
++|+|++|++.....+++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+..++....+.+....+.
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~~~~~~~~~ 78 (424)
T 3gri_A 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPS---NGVDIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGTKA 78 (424)
T ss_dssp EEEESCEEEETTEEEECEEEEETTEEEEEESCCCCC---SSCEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHHHHH
T ss_pred EEEEeeEEEcCCCceeeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEEeCeEEeeecCCCCCCCCHHHHHHHHHH
Confidence 789999999944366899999999999999876532 26789999999999999999999998777778889999999
Q ss_pred HHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC-CcccHHHHHHHHHcCCcEEEEcccCCCCC
Q 010547 125 AAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGIN 203 (507)
Q Consensus 125 ~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 203 (507)
++++||||+++++ .+.|.....+.+....+.+.....+++..++.+... .++..+++.++.+.|+.++.. .
T Consensus 79 ~~~~G~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~~~~~~-------~ 150 (424)
T 3gri_A 79 AARGGFTTVCPMP-NTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALVKEGAFAFTD-------D 150 (424)
T ss_dssp HHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGCSSSBCCHHHHHTTTCCCEEE-------C
T ss_pred HHhCCEEEEeECc-CCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCCcchHHHHHHHHhcCcEEEec-------C
Confidence 9999999999998 777877888888888777776555666655554432 223345577777888887754 3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCC
Q 010547 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283 (507)
Q Consensus 204 ~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~ 283 (507)
+.+..+++.++++++.+++++.++.+|+++...+..... +++......+...+|...+..++.+.+.++++.
T Consensus 151 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~----~~g~~~~~~~~~~~p~~~E~~~v~r~~~la~~~---- 222 (424)
T 3gri_A 151 GVGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAM----HEGKRSKELGIPGIPNICESVQIARDVLLAEAA---- 222 (424)
T ss_dssp SSCCCSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTCCE----ESSHHHHHHTCCEECTHHHHHHHHHHHHHHHHH----
T ss_pred CcCcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhhhh----hcCccchhhCCCCCCHHHHHHHHHHHHHHHHHh----
Confidence 445678999999999999999999999998876543222 233344455667789999999999999999977
Q ss_pred CCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCee
Q 010547 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 363 (507)
Q Consensus 284 ~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~ 363 (507)
|.++|+.|+++. ..++.++.+++.|+.+++++|||++.++.+.+...++.++.+||+|...++..+++++.+|.++
T Consensus 223 ---g~~~~i~H~s~~-~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~ 298 (424)
T 3gri_A 223 ---GCHYHVCHVSTK-ESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTID 298 (424)
T ss_dssp ---TCCEEECSCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHTTSSC
T ss_pred ---CCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHhCcCceEEEeCCCCCHHHHHHHHHHHhcCCce
Confidence 889999999998 9999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCc
Q 010547 364 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 442 (507)
Q Consensus 364 ~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~AD 442 (507)
+++||++|+....+. .+|...+.|+.+++..++.++.. ..+.++|++++++++|.|||+++|+ ++|+|++|+.||
T Consensus 299 ~igtDhap~~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~-~~g~l~~G~~Ad 374 (424)
T 3gri_A 299 CIATDHAPHARDEKA---QPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL-EYGTLKENGYAD 374 (424)
T ss_dssp EECCCBCCCCHHHHT---SCTTTSCCCCCCTTTHHHHHHHHHTTTSSCCHHHHHHHHTHHHHHHTTC-SCSCCCTTSBCC
T ss_pred EEEcCCCCCCHHHcc---CCHhHCCCCCccccccHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCC-CCCcccCCCcCC
Confidence 999999999988764 47899999999999999988865 4566799999999999999999999 689999999999
Q ss_pred EEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCc
Q 010547 443 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 443 lvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
|+++|++.+|.++.. .+.++.. ++||.+..+.|.|..||++|++||++|+
T Consensus 375 ~~~~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~~~G~~v~~~g~ 424 (424)
T 3gri_A 375 LTIIDLDSEQEIKGE-DFLSKAD-NTPFIGYKVYGNPILTMVEGEVKFEGDK 424 (424)
T ss_dssp EEEEESSCCEECCGG-GCSSSCC-CCTTTTCEESCEEEEEEETTEEEEEC--
T ss_pred EEEEcCCCCEEEchh-hcccccC-CCCcCCCEEeeeEEEEEECCEEEEeCCC
Confidence 999999999988877 7788888 9999999999999999999999999985
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-53 Score=428.48 Aligned_cols=424 Identities=27% Similarity=0.437 Sum_probs=360.2
Q ss_pred ceEEEEecEEECCCC-ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 43 NQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~-~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
++++|+|++|+|..+ ..+++|+|+||||++|++..+. .+.++||++|++|+|||||+|+|+..++....+.+...
T Consensus 1 m~~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~ 76 (428)
T 3mpg_A 1 MNYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENITA----DNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETG 76 (428)
T ss_dssp CEEEEEEEEEECSSSCEEEEEEEEESSBEEECCSSCCC----TTSEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHH
T ss_pred CcEEEEeeEEEeCCCCeeeeeEEEECCEEEEecCCCCC----CCCeEEECCCCEEeeCEEEEeeccCCCCCCchhHHHHH
Confidence 368999999997555 5689999999999999986542 26789999999999999999999988777778889999
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC-cccHHHHHHHHHcCCcEEEEcccCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKSFMCPS 200 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 200 (507)
.+.++++||||+++++ .+.|.....+.+....+.+......++..++.+.... .+....+.++.+.|+.++..
T Consensus 77 ~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~G~~~~~~----- 150 (428)
T 3mpg_A 77 TLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTD----- 150 (428)
T ss_dssp HHHHHHHTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGCSSSBCCHHHHHHTTCCCEEC-----
T ss_pred HHHHHhCCeEEEEeCC-CCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCCcchHHHHHHHHHhCCEEEEC-----
Confidence 9999999999999998 7777777788888877777655556666655444322 23344567777888877743
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 201 GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
.+.+..+++.+.++++.+++++.++.+|+++...+..... ..+......++..+|...+..++.+.+.++++.
T Consensus 151 --~~~~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~~~----~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~- 223 (428)
T 3mpg_A 151 --DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCV----HEGKFSEKHGLNGIPSVCESVHIARDILLAEAA- 223 (428)
T ss_dssp --TTSCCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCTTCSE----ETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHH-
T ss_pred --CCcCCCCHHHHHHHHHHHHhcCCeEEEECCChhHhhhHHh----hcCccchhhCcCCCCHHHHHHHHHHHHHHHHHh-
Confidence 3445678999999999999999999999998766442222 233334445667788888999999999999876
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G 360 (507)
+.++|+.|+++. ..++.++.+++.|+.+++++|||++.++.+.+...+..++.+||+|...++..+++++.+|
T Consensus 224 ------g~~~~i~H~s~~-~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G 296 (428)
T 3mpg_A 224 ------DCHYHVCHVSTK-GSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDG 296 (428)
T ss_dssp ------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHHT
T ss_pred ------CCCEEEEeCCCH-HHHHHHHHHHhcCCCEEEEEchHHhEECHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHhCC
Confidence 889999999998 8999999999999999999999999999999988899999999999999999999999999
Q ss_pred CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCC
Q 010547 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN 439 (507)
Q Consensus 361 ~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~ 439 (507)
.+++++||+.+++...+.. .|...+.|+.+++..++.++.. ....+++++++++++|.|||++||++ +|+|++|+
T Consensus 297 ~i~~i~tDh~p~~~~~k~~---~~~~~p~g~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~-~g~i~~G~ 372 (428)
T 3mpg_A 297 TIDMIATDHAPHTAEEKAQ---GIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLE-AGRLKEGR 372 (428)
T ss_dssp SSCCBCCCBCCCCTTGGGS---CTTTSCSCCCCTTTHHHHHHHHTTTTTSSCHHHHHHTTTHHHHHHHTCS-CSCCCTTS
T ss_pred CCcEEEcCCCCCCHHHccc---CHhhCCCCceehhhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-CccccCCC
Confidence 9999999999998777643 5888999999999999988875 44557999999999999999999997 89999999
Q ss_pred CCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCccc
Q 010547 440 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496 (507)
Q Consensus 440 ~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~ 496 (507)
.|||+++|++..+.++.. .+.++.. ++||.+..+.|.|..||++|++||++|+++
T Consensus 373 ~Ad~~~~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v~~~g~~~ 427 (428)
T 3mpg_A 373 TADITIIDLEQEEEIDPT-TFLSKGK-NTPFAGWKCQGWPVMTIVGGKIAWQKESAL 427 (428)
T ss_dssp BCCEEEEESSCCEECCGG-GCSSSCC-CCSCTTCEECCEEEEEEETTEEEEECSCC-
T ss_pred cCCEEEEcCCCCEEEchh-hccccCC-CCCcCCCEEeeEEEEEEECCEEEEeCCccc
Confidence 999999999998888777 7788888 999999999999999999999999999874
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=429.64 Aligned_cols=444 Identities=24% Similarity=0.346 Sum_probs=352.0
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC--CCCCCCChhHHH
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGT 122 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~--~~~~~~~~~~~~ 122 (507)
++|+|++|+++++..+++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+... +....+++....
T Consensus 2 ~li~n~~vv~~~~~~~~~v~I~~g~I~~ig~~~~~~---~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 78 (458)
T 1gkp_A 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAP---PGTEVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGS 78 (458)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCC---TTCEEEECTTSEEEECEEEEEECSSCEETTEECSCCHHHHH
T ss_pred EEEEeeEEECCCCceEeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEecccCCCcCCCCCcCHhHHHHHH
Confidence 689999999998777899999999999999864322 256899999999999999999999764 223456777778
Q ss_pred HHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCC
Q 010547 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 202 (507)
Q Consensus 123 ~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 202 (507)
+.++++||||+++++ .+.+.....+.+....+....+..+++..+.......++..+.++++.+.|+..++.++.+.
T Consensus 79 ~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 155 (458)
T 1gkp_A 79 KAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYK-- 155 (458)
T ss_dssp HHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTHHHHHHHHHHTTCCEEEEEECST--
T ss_pred HHHHhCCccEEEeCC-CCCCCCCHHHHHHHHHHHhccCceeeEEEEEeecCCchhhHHHHHHHHHhCCCEEEEEeccC--
Confidence 888999999999986 44344444556666555555556666666554444444456778888888998888876542
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccC
Q 010547 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (507)
Q Consensus 203 ~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 282 (507)
.....+++.+.++++.|++++.++.+|++....+........ ..+......+...+|...+.+++.+.+.++...
T Consensus 156 -~~~~~~~~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--- 230 (458)
T 1gkp_A 156 -NFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLL-SEGKTGPEWHEPSRPEAVEAEGTARFATFLETT--- 230 (458)
T ss_dssp -TTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHH-HTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHH---
T ss_pred -CCcCCCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-hcCCCChhhccCcCCHHHHHHHHHHHHHHHHHh---
Confidence 224578999999999999999999999987655433222110 223333333445678878888888888888876
Q ss_pred CCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC---CCCceeEcCCCCChhhHHHHHHHHhc
Q 010547 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMD 359 (507)
Q Consensus 283 ~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~l~~ 359 (507)
+.++|+.|+++. ..++.++.+++.|+.+++++||+++.++.+.+.. .+..++..|++|....++.+++++.+
T Consensus 231 ----g~~~~~~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~p~r~~~~~~~l~~~~~~ 305 (458)
T 1gkp_A 231 ----GATGYVVHLSCK-PALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQ 305 (458)
T ss_dssp ----TCEEEECSCCSH-HHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHHHHHHHHHT
T ss_pred ----CCCEEEEeCCCH-HHHHHHHHHHHcCCeEEEEecccceeeCHHHhcccccCCcceEEeCCCCCHHHHHHHHHHHhc
Confidence 889999999987 7889999999999999889999998888776532 12334567899998889999999999
Q ss_pred CCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcC-CCHHHHHHHHhhchhHHhCC-CCCCcccc
Q 010547 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQ-VSKGAIAI 437 (507)
Q Consensus 360 G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-ls~~~al~~~T~n~A~~lgl-~~~G~I~~ 437 (507)
|+.+++|||+.+++...+....+.|...+.|+.+++..+..++....+.+ +|++++++++|.|||++||+ +++|+|++
T Consensus 306 G~~~~~gtD~~~~~~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~ 385 (458)
T 1gkp_A 306 GFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAV 385 (458)
T ss_dssp TSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCT
T ss_pred CCeeEEECCCCCCCHHHhhcccCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCC
Confidence 99999999999988765544445688778889999998888877655554 99999999999999999999 67999999
Q ss_pred CCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCC-Cccccc
Q 010547 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAAC-GSPILA 506 (507)
Q Consensus 438 G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~-~~~~~~ 506 (507)
|++||||++|.+..+.++.. .+.+... ++||.++...+.|..||++|++||++|+++...+ |+++|.
T Consensus 386 G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~ 453 (458)
T 1gkp_A 386 GSDADLVVYDPQYRGTISVK-TQHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRR 453 (458)
T ss_dssp TSBCCEEEEETTCCEECCGG-GCCSSSS-CCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred CCcCCEEEEeCCCCeEEchH-HcccccC-CCccCCCEEeeEEEEEEECCEEEEECCeeccCCCCceeccC
Confidence 99999999999988887765 5666667 8999999999999999999999999999998776 999974
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-53 Score=438.53 Aligned_cols=446 Identities=24% Similarity=0.362 Sum_probs=352.4
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC---CCCCCCh
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RTEWEGF 118 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~---~~~~~~~ 118 (507)
+++++|+|++|+++++..+++|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+..+. ..+.+++
T Consensus 2 ~m~~li~n~~vv~~~~~~~~~v~I~~g~I~~Ig~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~ 78 (559)
T 2fty_A 2 IYDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPS---LGSEVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTM 78 (559)
T ss_dssp CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGG---GEEEEEECTTCEEEECEEECCBCCCCTTCTTSCCSCCH
T ss_pred CceEEEECcEEEcCCCceeeeEEEECCEEEEecCCCCCC---CCCeEEeCCCCEEEcCEEeeccCcCccccccCCCHHHH
Confidence 457899999999998877899999999999999764321 1467999999999999999999998762 3356778
Q ss_pred hHHHHHHHhCCceEEEeCCCCCC---CCCC-CHHHHHHHHHHHhc-CceeeEEEeccccCC---Ccc---cH-HHHHHHH
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSD---PSTI-STETLKLKVDAAEK-RIYVDVGFWGGLVPE---NAY---NA-SALEALL 186 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~---p~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~---~~-~~~~~~~ 186 (507)
....+.++++||||+++++ .+. +... ..+.+....+.... +..+++.++...... ..+ .. +++.++.
T Consensus 79 ~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~l~~~~~~l~ 157 (559)
T 2fty_A 79 EHATRSAVAGGTTTVVAFS-TQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAY 157 (559)
T ss_dssp HHHHHHHHHTTEEEEEEEE-ECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEECCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcEEEEEECc-CcccCCcchHHHHHHHHHHHHHHHhhcceeEEEeeeeeccCcCCCchhhhhHHHHHHHHH
Confidence 8888999999999999986 333 2222 22222100122222 355666655444332 112 33 5666666
Q ss_pred -HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHH
Q 010547 187 -NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (507)
Q Consensus 187 -~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (507)
+.|+.+++.++.+. + ...+++++.++++.|++++.++.+|+++...+........ ..+......+...+|...+
T Consensus 158 ~~~G~~~iki~~~~~---~-~~~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~-~~G~~~~~~~~~~~p~~~E 232 (559)
T 2fty_A 158 NDYGVSSVKMFMTYP---G-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALE-EQGLTDAYYHGVSRPSIVE 232 (559)
T ss_dssp HHHCCCEEEEESSST---T-TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHH-HTTCCSTTHHHHTSCHHHH
T ss_pred HHCCCCEEEEEecCC---C-CcCCHHHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHH-hcCCCChhhcccCCCHHHH
Confidence 67888999987653 2 3678999999999999999999999988765443221111 2333344455667888889
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC-------------
Q 010547 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP------------- 332 (507)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~------------- 332 (507)
.+++.+.+.++.+. +.++|+.|+++. ..++.++.+++.|+.+++++||+++.++.+.+.
T Consensus 233 ~~av~~~i~la~~~-------g~~vhi~H~s~~-~~~~~i~~ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~ 304 (559)
T 2fty_A 233 GEATNRAITLATTM-------DTPILFVHVSSP-QAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVG 304 (559)
T ss_dssp HHHHHHHHHHHHHT-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGSCC--------CCS
T ss_pred HHHHHHHHHHHHHh-------CCCEEEEcCCCH-HHHHHHHHHHHcCCceEEeecCcccccCHHHhhccccccccccccc
Confidence 99999999999875 888999999987 889999999999999999999999988876661
Q ss_pred ----------------C-CCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhh-------------ccccC
Q 010547 333 ----------------D-GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK-------------LLDEG 382 (507)
Q Consensus 333 ----------------~-~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~-------------~~~~~ 382 (507)
. .++.++.+||+|...+++.+++++++|++++++||+.+++...+ ..+.+
T Consensus 305 ~d~~~~~~~~~~~~~~~~~~~~~~~~PplR~~~~~~~l~~~l~~G~~~~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~ 384 (559)
T 2fty_A 305 IDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNG 384 (559)
T ss_dssp CCGGGCSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHTTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEES
T ss_pred cCccccccccccccCccccccCcEECCCCCCHHHHHHHHHHHhcCceEEEEeCCCCCChhhccccccccccccccccccC
Confidence 1 24667889999999999999999999999999999998876542 22246
Q ss_pred CccccCCCCchhhhHHHHHHHHHH-hcCC-CHHHHHHHHhhchhHHhCC-CCCCccccC-CCCcEEEEcCCC--------
Q 010547 383 NFLKAWGGISSLQFVLPVTWSYGR-KYGV-TLEQLASWWSERPAKLAGQ-VSKGAIAIG-NHADLVVWEPEA-------- 450 (507)
Q Consensus 383 ~~~~~~~~~~~~~~~l~~~~~~~~-~~gl-s~~~al~~~T~n~A~~lgl-~~~G~I~~G-~~ADlvvld~~~-------- 450 (507)
+|...+.|+.+++..++.++.... +..+ +++++++++|.|||++||+ +++|+|++| +.||||+||++.
T Consensus 385 ~f~~~~~G~~g~e~~l~~ll~~~v~~~~l~~~~~~~~~~t~~~A~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~ 464 (559)
T 2fty_A 385 EFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSK 464 (559)
T ss_dssp CGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTS
T ss_pred CHhhCCCCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHhHHHHHHhCCCCCCceeeccCCcCCEEEEeCcccccccCCc
Confidence 899999999999999998886554 4459 9999999999999999999 779999999 999999999997
Q ss_pred ceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCC-CCCccccc
Q 010547 451 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 506 (507)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~-~~~~~~~~ 506 (507)
++.++.. .+.+... ++||.+....+.|..||++|++||++|+++.. ..|+||+.
T Consensus 465 ~~~~~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~ 519 (559)
T 2fty_A 465 PKLITNK-LMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLKR 519 (559)
T ss_dssp CSBCCTG-GGTSSCS-CCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCCC
T ss_pred cEEEchH-HhcccCC-CCCccCCEecceEEEEEECCEEEEECCeeccCCcCCeeecC
Confidence 7777766 7778888 99999999999999999999999999999865 45999974
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=421.33 Aligned_cols=446 Identities=28% Similarity=0.451 Sum_probs=348.1
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC-CCCCCChhHH
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RTEWEGFPSG 121 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~-~~~~~~~~~~ 121 (507)
.+++|+|++|+++++..+++|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+.... ..+.+++...
T Consensus 2 ~~~li~~~~v~~~~~~~~~~v~I~~g~I~~ig~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 78 (458)
T 1gkr_A 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDV---EASRTIDAGGKFVMPGVVDEHVHIIDMDLKNRYGRFELD 78 (458)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTC---CEEEEEECTTCEEEECEEEEEEECCCGGGTTTSCCHHHH
T ss_pred ceEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCC---CCCeEEeCCCCEEecCEEEeeecccCCCCCCchhHHHHH
Confidence 47899999999998777899999999999999764221 2467999999999999999999998754 4456677888
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 201 (507)
.+.++++||||+++++.++.|.....+.+....+.+.... +++..+.+... ...+++.++.+.|+.+++.++.+..
T Consensus 79 ~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~g~~~i~~~~~~~~ 154 (458)
T 1gkr_A 79 SESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLK-VDFALYGGGVP---GNLPEIRKMHDAGAVGFKSMMAASV 154 (458)
T ss_dssp HHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS-SEEEEEEECCT---TCHHHHHHHHHTTCCEEEEESSCSB
T ss_pred HHHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCc-eeEEEEeccCC---CCHHHHHHHHHcCCcEEEEeecccC
Confidence 8899999999999986223444445666666666665554 56655544432 2356677888889999998876543
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
....+..+.+.++++++.|++++.++.+|++....++....... ..+......+....|...+...+.+...+..+.
T Consensus 155 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~-~~G~~~~~~h~~~~~~~~~~~~~~~~~~la~~~-- 231 (458)
T 1gkr_A 155 PGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIK-AAGGKDMAAYEASQPVFQENEAIQRALLLQKEA-- 231 (458)
T ss_dssp TTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHH-HTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHH--
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHh-hcCccchhhccccCCHHHHHHHHHHHHHHHHHh--
Confidence 22234678999999999999999999999987654332111000 111112222333456667777888888888876
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~ 361 (507)
+.++|+.|+++. ..++.+.++++.|+.+++++||+++.++.+.+...+..++..|+++.......+++++++|+
T Consensus 232 -----g~~~h~~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~l~~~~~~G~ 305 (458)
T 1gkr_A 232 -----GCRLIVLHVSNP-DGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGL 305 (458)
T ss_dssp -----CCEEEECCCCSH-HHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHTC
T ss_pred -----CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEEchHHheeCHHHhhccCceEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 888999999986 77888888888998889999999988876665444556777899999999999999999999
Q ss_pred eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCC
Q 010547 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGN 439 (507)
Q Consensus 362 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~ 439 (507)
.+++|||+.+++...+..+..++.....++.+.+..+..++.... ..++|++++++++|.|||++||+ +++|+|++||
T Consensus 306 ~~~lgtD~~~~~~~~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~ 385 (458)
T 1gkr_A 306 IDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGS 385 (458)
T ss_dssp CCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTS
T ss_pred ceEEEeCCCCCChHHhccccCCHhHCCCCcccHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCCCC
Confidence 999999998876654432224677777888998888877776444 44799999999999999999999 6799999999
Q ss_pred CCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCC-Cccccc
Q 010547 440 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAAC-GSPILA 506 (507)
Q Consensus 440 ~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~-~~~~~~ 506 (507)
.||||++|.+..+.++.. ++.+... ++||.+....+.|..||++|++||++|+++.... |++++.
T Consensus 386 ~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~ 451 (458)
T 1gkr_A 386 DADLLILDLDIDTKVDAS-QFRSLHK-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR 451 (458)
T ss_dssp BCCEEEEESCCCEECCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC
T ss_pred cCCEEEEcCCcceEEcHH-HccccCC-CCCcCCCEeeeEEEEEEECCEEEEECCccccCCCCCeecCC
Confidence 999999999988877666 6677777 9999999999999999999999999999988776 999975
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-51 Score=418.45 Aligned_cols=443 Identities=26% Similarity=0.393 Sum_probs=348.3
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCC-CCCC-CCCChhHH
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD-PGRT-EWEGFPSG 121 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~-~~~~-~~~~~~~~ 121 (507)
+++|+|++|+++++..+++|+|+||||++|++..+ .+.++||++|++|+|||||+|+|+.. .... ..+++...
T Consensus 2 ~~li~n~~v~~~~~~~~~~v~I~~g~I~~ig~~~~-----~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~ 76 (457)
T 1nfg_A 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALG-----PAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFATA 76 (457)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC-----CCSEEEECTTCEEEECEEEEEECCSCEETTEECSCCHHHH
T ss_pred cEEEEeeEEEeCCCceeeeEEEECCEEEEecCCCC-----CCCeEEeCCCCEEccceEeeccccccCcCCCCChhhHHHH
Confidence 57999999999988778999999999999987542 25689999999999999999999973 2222 45677778
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 201 (507)
.+.++++||||+++++ .+.|.....+.+....+.......+++..+.+.....+...+.+.++.+.|+.+++.++.+..
T Consensus 77 ~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~k~~~~~~~ 155 (457)
T 1nfg_A 77 TVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMAYRG 155 (457)
T ss_dssp HHHHHHTTEEEEEEEE-ECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHHHHHHTTTGGGGTCCEEEEESSSTT
T ss_pred HHHHHhCCcEEEEeCC-CCCCCCChHHHHHHHHHHhcccCccCEEEEEeecCCchhHHHHHHHHHHcCCCEEEEeeccCC
Confidence 8899999999999987 444555556667766666655566677666655444443344555666789999999875432
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
....+.+++.++++.+++.+.++.+|++....+...+.... ..+......+....|...+.+.+.+.++++++.
T Consensus 156 ---~~~~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~-- 229 (457)
T 1nfg_A 156 ---MNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFV-AEGKTAPIYHALSRPPRVEAEATARALALAEIV-- 229 (457)
T ss_dssp ---TTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHH-HTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHH--
T ss_pred ---CCCCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHH-hcCCcchhhccccCCHHHHHHHHHHHHHHHHHH--
Confidence 12357788999999999999999999987665443322110 111112222333567778888999999999987
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC---CCCceeEcCCCCChhhHHHHHHHHh
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALM 358 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~l~ 358 (507)
|.++|+.|+.+. ..++.++.+++.|..+.+++++|++.++.+.+.. .+..+..+|+++.......+++++.
T Consensus 230 -----g~~~~~~H~~~~-~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~~ 303 (457)
T 1nfg_A 230 -----NAPIYIVHVTCE-ESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNALR 303 (457)
T ss_dssp -----TCCEEECCCCSH-HHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHHHHHHHHHH
T ss_pred -----CCCEEEEeCCcH-HHHHHHHHHHHcCCeEEEEEchHHhEeCHHHhccccccCceeEEcCCCCCHHHHHHHHHHHh
Confidence 888999999976 7788898888889888888899999998777654 4667788899998888899999999
Q ss_pred cCCeeEEeCCCCCCChh-hhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccc
Q 010547 359 DGHIDMLSSDHSPTVPE-LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIA 436 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~ 436 (507)
+|+.+++|||+.+++.. .+....++|...+.++.+.+..+..++......++|++++++++|.|||++||+ +++|+|+
T Consensus 304 ~G~~~~~gtD~~~~~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~ 383 (457)
T 1nfg_A 304 NGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIA 383 (457)
T ss_dssp TTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCS
T ss_pred CCCeEEEecCCCCCChHHhhhcccCCHhHCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCCCCCcCcC
Confidence 99999999999877644 232222567777788889898887777545555799999999999999999999 5799999
Q ss_pred cCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCC-Cccccc
Q 010547 437 IGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAAC-GSPILA 506 (507)
Q Consensus 437 ~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~-~~~~~~ 506 (507)
+|+.||||++|.+..+.++.. ++.+... ++||.+....+.|..||++|++||++|+++...+ |++++.
T Consensus 384 ~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~ 452 (457)
T 1nfg_A 384 VGSDADIVLWDPEAEMVIEQT-AMHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKR 452 (457)
T ss_dssp TTSBCCEEEEEEEEEEECCGG-GSCSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCC
T ss_pred CCCccCEEEEeCCCCEEecHH-HccCCCC-CCCccCCEecceEEEEEECCEEEEECCccccCCCCCeeeCC
Confidence 999999999999888777665 6677777 9999999999999999999999999999988777 999975
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=416.49 Aligned_cols=448 Identities=21% Similarity=0.286 Sum_probs=348.4
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC--CCCCCh
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGF 118 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~--~~~~~~ 118 (507)
++.+++|+|++|++++...+++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..+.. .+.+++
T Consensus 6 ~~~~~lI~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~---~~~~vIDa~G~~v~PGlID~H~H~~~~~~~~~~~e~~ 82 (521)
T 2ftw_A 6 QTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPK---EGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDF 82 (521)
T ss_dssp -CCCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCC---SSCCEEECTTCEEEECEEEEEECTTCEETTEECSSCH
T ss_pred ccCCEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEeeecccCcCCCCccCHHHH
Confidence 4567999999999988877899999999999999864322 25689999999999999999999976422 245678
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH-HcCCcEEEEcc
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFM 197 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 197 (507)
....+.++++||||++++. .+.+.....+.+......+.....+++.++.......+...+++.++. +.|+.+++.|+
T Consensus 83 ~~~~~~a~~~G~Ttv~d~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~l~~l~~~~G~~~~k~~~ 161 (521)
T 2ftw_A 83 DIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFM 161 (521)
T ss_dssp HHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCHHHHHHHHHHHHHSCCCEEEEES
T ss_pred HHHHHHHHhCCcceecCcC-CCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeecCCChhHHHHHHHHHHhCCCCEEEEEe
Confidence 8888999999999999975 222222334444444444334455566665544333334455666666 47899999887
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHH
Q 010547 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 277 (507)
.+. +....+++++.++++.|++++.++.+|+++...+...+.... ..+......+....|+..+..++.+.+.++.
T Consensus 162 ~~~---~~~~~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~-~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~ 237 (521)
T 2ftw_A 162 AYK---NSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKML-EMGITGPEGHELSRPEALEAEATNRAIVIAD 237 (521)
T ss_dssp SCT---TTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTHHHHHHSCTHHHHHHHHHHHHHHH
T ss_pred ccC---CCcCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH-HcCCCChhhccccCcHHHHHHHHHHHHHHHH
Confidence 542 224578999999999999999999999987653332222111 2222222222334566677777777777777
Q ss_pred hhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC----CCCceeEcCCCCC-hhhHHH
Q 010547 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRD-AANKEK 352 (507)
Q Consensus 278 ~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~-~~~~~~ 352 (507)
.. +.++|+.|+.+. ...+.++.+++.|+.++++++++++.++...+.. .+..++.+||+|. ...++.
T Consensus 238 ~~-------~~p~hi~h~ss~-~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~ 309 (521)
T 2ftw_A 238 SV-------CTPVYIVHVQSI-GAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGV 309 (521)
T ss_dssp HH-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHH
T ss_pred Hh-------CCCEEEEecCcH-HHHHHHHHHHHcCCeEEEEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHH
Confidence 65 778999999987 8889999999999999999999998887765532 1234567899997 678889
Q ss_pred HHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-C
Q 010547 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-V 430 (507)
Q Consensus 353 ~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gls~~~al~~~T~n~A~~lgl-~ 430 (507)
+++++.+|...+++||+.++....+....++|...+.|+.+++..++.++....+ .+++++++++++|.|||++||+ +
T Consensus 310 l~~~l~~g~~~~~gsD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~ 389 (521)
T 2ftw_A 310 LMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYP 389 (521)
T ss_dssp HHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTT
T ss_pred HHHHhcCCCEEEEEeCCCCCCHHHhhcccCChhhCCCCCccHHHHHHHHHHHHHhcCCCCHHHHHHHhChhHHHHhCCCC
Confidence 9999999999999999999887766655567888888999999999888875544 4699999999999999999999 6
Q ss_pred CCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCccc-CCCCCccccc
Q 010547 431 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA 506 (507)
Q Consensus 431 ~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~-~~~~~~~~~~ 506 (507)
++|+|++|++|||||||++..+.+... .+.++.. ++||.+....|.|..||++|++||++|+++ ...+|++++-
T Consensus 390 ~~G~i~~G~~ADlvv~d~~~~~~i~~~-~~~~~~~-~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~ 464 (521)
T 2ftw_A 390 RKGRIDVGCDGDIVIWDPNQSKTISKD-THHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPR 464 (521)
T ss_dssp TSSCCSTTSBCCEEEEEEEEEEECCTT-TCCCSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred CCCCcCCCCcCCEEEEeCCCCEEEChH-HccccCC-CCCcCCCEeeeeEEEEEECCEEEEECCeecccCcCceEecC
Confidence 799999999999999999988888777 7778888 999999999999999999999999999998 5688999974
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=409.99 Aligned_cols=448 Identities=22% Similarity=0.275 Sum_probs=341.5
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC--CCCCCh
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGF 118 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~--~~~~~~ 118 (507)
.+++++|+|++|+++++..+++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+..+.. .+.+++
T Consensus 24 ~~~~~li~n~~v~~~~~~~~~~V~I~~grI~~Ig~~~~~~---~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~e~~ 100 (501)
T 2vm8_A 24 TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVP---GGVKTIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDF 100 (501)
T ss_dssp -CCCEEEEEEEEECSSCEEEEEEEEETTEEEEEESSCCCC---SSSCEEECTTCEEEECEEEEEECTTCEETTEECSSCH
T ss_pred CcCCEEEEeeEEECCCCceEeeEEEECCEEEEeccCCCCC---CCCeEEECCCCEEeeCEEEeeecccccccCCCcHHHH
Confidence 3467999999999998877899999999999999865322 25689999999999999999999976432 245678
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH-HcCCcEEEEcc
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFM 197 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 197 (507)
....+.++++||||+++++ .+.|.....+.+....+.........+..+.......+...+++.++. +.|+.+++.++
T Consensus 101 ~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~l~~~~G~~~i~~~~ 179 (501)
T 2vm8_A 101 FQGTKAALAGGTTMIIDHV-VPEPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYM 179 (501)
T ss_dssp HHHHHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEES
T ss_pred HHHHHHHHhCCcEEEEeCC-CCCCCCChHHHHHHHHHHHhcCCeeEEEEEEEecCCCcccHHHHHHHHHhCCceEEEEee
Confidence 8888999999999999986 444433334555554444333334455544333222223345566666 47888999876
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHH
Q 010547 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 277 (507)
.+.. ....+.+++.++++.|++++.++.+|++....+...+.... ..+......+....|+..+..++.+.+.+..
T Consensus 180 ~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 255 (501)
T 2vm8_A 180 AFKD---RFQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRIL-DLGITGPEGHVLSRPEEVEAEAVNRAITIAN 255 (501)
T ss_dssp SSTT---TTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHH-TTTCCSTHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccCC---CCCCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHH-hcCCCChhhccccCCHHHHHHHHHHHHHHHH
Confidence 5432 13578999999999999999999999987543322222111 2222222233334566677778888888887
Q ss_pred hhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC----CCceeEcCCCCCh-hhHHH
Q 010547 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRFKCAPPIRDA-ANKEK 352 (507)
Q Consensus 278 ~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~-~~~~~ 352 (507)
.. +.++|+.|+.+. ...+.++.+++.|+.+.++.+++++.++...+... +..++.+||+|.. .....
T Consensus 256 ~~-------g~~~hi~h~~~~-~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~ 327 (501)
T 2vm8_A 256 QT-------NCPLYITKVMSK-SSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDF 327 (501)
T ss_dssp HH-------TCCEEEEEECCH-HHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHH
T ss_pred Hh-------CCcEEEEeCCcH-HHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHH
Confidence 66 888999999987 77999999999999888888888887776554321 1235567888865 56788
Q ss_pred HHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-C
Q 010547 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-V 430 (507)
Q Consensus 353 ~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gls~~~al~~~T~n~A~~lgl-~ 430 (507)
+++++.+|+.+++|||+.+++...++...+.|...+.|+.+.+..+..++....+ .+++++++++++|.|||++||+ +
T Consensus 328 l~~~l~~G~~~~~gtD~~~~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~ 407 (501)
T 2vm8_A 328 LNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYP 407 (501)
T ss_dssp HHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHHTCTT
T ss_pred HHHHHhcCceEEEEecCCCCChhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCC
Confidence 8999999999999999998877666554556777778889999888877766544 4799999999999999999999 6
Q ss_pred CCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCccc-CCCCCccccc
Q 010547 431 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA 506 (507)
Q Consensus 431 ~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~-~~~~~~~~~~ 506 (507)
++|+|++|+.||||++|.+..+.++.. .+.+... ++||.+....+.|..||++|++||++|+++ ...+|++++.
T Consensus 408 ~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~s~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~l~~ 482 (501)
T 2vm8_A 408 RKGRIAVGSDADLVIWDPDSVKTISAK-THNSSLE-YNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPR 482 (501)
T ss_dssp TSSCCCTTSBCCEEEEEEEEEEECCTT-TSSSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred CCCccCCCCcCCEEEEcCCCCeeeccc-ccccccc-CCCccCcEeCceEEEEEECCEEEEECCeEccCCCCCceecC
Confidence 799999999999999999988888766 6677777 999999999999999999999999999998 6778999975
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=409.99 Aligned_cols=450 Identities=22% Similarity=0.284 Sum_probs=342.7
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCC-CCCCcEEecCCCEEecceeecccccCCCCC--CCCCCh
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGF 118 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~-~~~~~viD~~g~~v~PGfID~H~H~~~~~~--~~~~~~ 118 (507)
+.+++|+|++|++++...+++|+|+||||++|++....+.. +.+.++||++|++|+|||||+|+|+..+.. ...+++
T Consensus 26 ~~~~lI~ng~Vv~~~~~~~~dV~I~dGrI~~Ig~~~~~~~~~~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~~~~~~e~~ 105 (541)
T 2vr2_A 26 PSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDF 105 (541)
T ss_dssp -CEEEEESCEEECSSCEEECEEEEETTEEEEEEC-----------CEEEECTTSEEEECEEEEEECTTCBCSSSBCSCCT
T ss_pred cCCEEEECcEEEcCCCceEeeEEEECCEEEEeccCCCCCcccccCceEEECCCCEEccCEEEecccCCCCCCCCcCHHHH
Confidence 46899999999998887789999999999999986432210 012389999999999999999999976532 245678
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHH-cCCcEEEEcc
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFM 197 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 197 (507)
....+.++++||||++++. ...+.....+.+............+++.++.......+...+++.++.+ .|+..++.|+
T Consensus 106 ~~~~~~al~~GvTtv~d~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~el~~l~~~~G~~~~k~~~ 184 (541)
T 2vr2_A 106 HQGTKAALSGGTTMIIDFA-IPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFM 184 (541)
T ss_dssp THHHHHHHTTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEECSCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHHHHHhCCeeeecccc-CCCCCCCHHHHHHHHHHHhccCceEEEeeeecccCCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 8888999999999999975 2222223344454444434444556666655443333344556666664 6888999887
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHH
Q 010547 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 277 (507)
.+. +....+++++.++++.|++++.++.+|+++...+...+.... ..+......+....|+..+..++.+.+.++.
T Consensus 185 ~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~-~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~ 260 (541)
T 2vr2_A 185 AYK---DLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKML-ALGITGPEGHELCRPEAVEAEATLRAITIAS 260 (541)
T ss_dssp SST---TTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred ccC---CccCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH-HcCCCChhhccccchhHHHHHHHHHHHHHHH
Confidence 543 223578999999999999999999999987654332222111 1222222222334566677777777788777
Q ss_pred hhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCC----CCCceeEcCCCCC-hhhHHH
Q 010547 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRD-AANKEK 352 (507)
Q Consensus 278 ~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~-~~~~~~ 352 (507)
.. +.++|+.|+.+. ...+.++.+++.|+.+.++.+++++.++...+.. ....++.+||+|. ...++.
T Consensus 261 ~~-------~~p~~~~h~ss~-~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~ 332 (541)
T 2vr2_A 261 AV-------NCPLYIVHVMSK-SAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDF 332 (541)
T ss_dssp HH-------TCCEEEEEECCH-HHHHHHHHHHHTTCCEEEEEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHH
T ss_pred Hh-------CCCEEEEeCCCH-HHHHHHHHHHHcCCeEEEEeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHH
Confidence 66 788999999887 7888999999999999888899888777654432 1233567899986 667888
Q ss_pred HHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-C
Q 010547 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-V 430 (507)
Q Consensus 353 ~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl-~ 430 (507)
+++++.+|...+++||+.++....+....+.|...+.|+.+++..+..++.... ..+++++++++++|.|||++||+ +
T Consensus 333 l~~~l~~g~~~~~gtD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~T~~pA~~lgl~~ 412 (541)
T 2vr2_A 333 LMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYP 412 (541)
T ss_dssp HHHHHHTTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTT
T ss_pred HHHHHhcCCeEEEEeCCCCCChHHhcccCCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 999999999999999999998877766566899999999999998888777554 44699999999999999999999 6
Q ss_pred CCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCccc-CCCCCccccc
Q 010547 431 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA 506 (507)
Q Consensus 431 ~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~-~~~~~~~~~~ 506 (507)
++|+|++|++||||+||.+..+.++.. .+.++.. ++||.+....|.|..||++|++||++|+++ ....|++++-
T Consensus 413 ~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~ 487 (541)
T 2vr2_A 413 RKGRIAVGSDADIVIWDPKGTRTISAK-THHQAVN-FNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPR 487 (541)
T ss_dssp TSSCCSTTSBCCEEEEEEEEEEECCTT-TCSSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCC
T ss_pred CCCccCCCCCCCEEEEcCCcCeEeCHH-HhhcccC-CCccCCCEEeeeEEEEEECCEEEEECCeeccCCCCceEecC
Confidence 799999999999999999888877766 6677777 999999999999999999999999999998 5678999874
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=404.00 Aligned_cols=440 Identities=26% Similarity=0.342 Sum_probs=343.7
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeec-CCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHH
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVS-EEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~-~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~ 121 (507)
++++|+|++|++++++.+++|+|+||+|++|++ .......+.+.++||++|++|+|||||+|+|+..++..+.+++...
T Consensus 4 m~~li~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~e~~~~~ 83 (452)
T 2gwn_A 4 MKILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREPGLTHKATIASE 83 (452)
T ss_dssp SEEEEEEEEEEETTEEEEEEEEEETTEEEEEEESCCCTTCCTTCSEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHH
T ss_pred ccEEEECeEEECCCceeeeeEEEECCEEEEEecCCCccccCCCCCeEEeCCCCEEecCEEeeccccCCCCCCcHHHHHHH
Confidence 468999999999887778999999999999997 5432100125689999999999999999999987766667788888
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCC
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG 201 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 201 (507)
.+.++++||||+++++ .+.|.....+.+....+.+.....+++.++++.... ..+.+.++...|..+++.++....
T Consensus 84 ~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~g~~g~k~~~~~~~ 159 (452)
T 2gwn_A 84 SRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTND---NIDEIKRVDKHLVPGLKLFLGSST 159 (452)
T ss_dssp HHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECEECCSS---CHHHHHTCCTTSCSCEEEESSSCC
T ss_pred HHHHHhCCeEEEEcCC-CCCCCCChHHHHHHHHHHhhccCcccEEEEEeecCC---CHHHHHHHHHcCCCEEEEEeccCC
Confidence 9999999999999998 666766778888777777766677788777665543 234555555568889999875432
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc-cccccccCCCChhHHHHHHHHHHHHHHhhc
Q 010547 202 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT-RSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280 (507)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~ 280 (507)
...+..+.+.+++.++ +.+.++..|++....+...+.......+. .....+...+|...+.+.+.+.++++.+.
T Consensus 160 -~~~~~~~~~~~~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~G~~~~~~~h~~~~~~~~~~~~l~~~~~la~~~- 234 (452)
T 2gwn_A 160 -GNMLVDNKETLEKIFG---ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERM- 234 (452)
T ss_dssp -GGGBCCCHHHHHHHHH---HCCSCEEEECCCHHHHHHHHHHHHHHHCSCCCGGGHHHHSCHHHHHHHHHHHHHHHHHH-
T ss_pred -CCcccCCHHHHHHHHH---HcCCEEEEcCCCHHHHHhHHhhhhhhcCcccchhhccccCChHHHHHHHHHHHHHHHHh-
Confidence 1234456666666554 45888899998765544332100000110 11122334567778888999999999987
Q ss_pred cCCCCCCceEEEEecCChhHHHHHHHH---HHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHH
Q 010547 281 TDGPAEGAHLHIVHLSDASSSLDLLME---AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL 357 (507)
Q Consensus 281 ~~~~~~g~~~~~~h~~~~~~~~~~i~~---~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 357 (507)
+.++|+.|+++. ...+.+.+ .++. ++++++++|++.++.+++...+..+..+|+++.......+++++
T Consensus 235 ------g~~v~i~H~~~~-~~~~~~~~~~a~~~~--~v~~~~~~h~~~l~~~~~~~~g~~~~~~P~lr~~~~~~~l~~~l 305 (452)
T 2gwn_A 235 ------NARLHILHLSTE-KELSLFRNDIPTAQK--RITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAAV 305 (452)
T ss_dssp ------TCCEEECCCCCT-GGGGGSCCSSCGGGC--SEEEEEEHHHHHCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHH
T ss_pred ------CCCEEEEeCCCH-HHHHHHHHhhcccCC--CeEEEEchHHhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHH
Confidence 888999999865 66666665 2433 56778899999998887765677788899999988999999999
Q ss_pred hcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCcccc
Q 010547 358 MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 437 (507)
Q Consensus 358 ~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~ 437 (507)
++|+++++|||+.+++...+ ..+|+..+.|+.+++..+..++....+.+++++++++++|.|||++||++++|+|++
T Consensus 306 ~~Gv~~~lgTD~~~~~~~~k---~~~~~~~~~g~~~~e~~~~~~~~~~~~~~ls~~~~l~~~T~~~A~~lgl~~~G~l~~ 382 (452)
T 2gwn_A 306 RNGRIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRP 382 (452)
T ss_dssp HHSSSCEEECCBCCCCHHHH---CSCTTTSCCCCCCTTTHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHHTBTTCSSCCT
T ss_pred HCCCceEEEeCCCCCChHHh---cCChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHcCCCCCCcccC
Confidence 99999999999988876543 246888888999999888877765556789999999999999999999966899999
Q ss_pred CCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCC-CCCcccc
Q 010547 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPIL 505 (507)
Q Consensus 438 G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~-~~~~~~~ 505 (507)
|+.|||+++|.+.++.++.. .+.++.. ++||.+....+.|..||++|++||++|+++.. ..|++++
T Consensus 383 G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~ 449 (452)
T 2gwn_A 383 GYYADLVLVDPSSPHTVSAD-NILSLCG-WSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLF 449 (452)
T ss_dssp TSBCCEEEEETTSCEECCTT-TCCSTTC-CCTTTTCEESCEEEEEEETTEEEEETTEECSSCCCCCBCC
T ss_pred CCcCCEEEEcCCCCeEECHH-HccccCC-CCCCCCcEEeeeEEEEEECCEEEEECCeeccCCCCceeeC
Confidence 99999999999988888776 6777777 99999999999999999999999999999876 7899986
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=388.92 Aligned_cols=422 Identities=29% Similarity=0.399 Sum_probs=321.8
Q ss_pred EEEEecEEECCCC-ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhHHHH
Q 010547 45 YWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTK 123 (507)
Q Consensus 45 ~~i~n~~i~~~~~-~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~ 123 (507)
++|+|++|+++++ ..+++|+|+||+|++|++. + +.++||++|++|+|||||+|+|+...+..+.+.+....+
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~---~----~~~~id~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~ 74 (426)
T 2z00_A 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEGG---E----AKQVVDGTGCFLAPGFLDLHAHLREPGEEVKEDLFSGLL 74 (426)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTEEEESBCC---C----CSEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHHHH
T ss_pred EEEEeeEEECCCCceecceEEEECCEEEEEecC---C----CceEEeCCCCEEecCEEEeccccCCCCCCchHHHHHHHH
Confidence 6899999999876 4589999999999999875 1 468999999999999999999998765555677888889
Q ss_pred HHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC-CcccHHHHHHHHHcCCcEEEEcccCCCC
Q 010547 124 AAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGI 202 (507)
Q Consensus 124 ~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 202 (507)
.++++||||+++++ .+.|.....+.+....+.......+++...+++... .+...+++.++.+.|+.+++.
T Consensus 75 ~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i~~------- 146 (426)
T 2z00_A 75 AAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTPAGLLREAGAVLLTD------- 146 (426)
T ss_dssp HHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGCSSSBCCHHHHHHHTCCEEEC-------
T ss_pred HHHhCCccEEEecC-CCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCChhhHHHHHHHHHcCCEEEEC-------
Confidence 99999999999997 555555556666666665554332444333333221 112233455555667777753
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccC
Q 010547 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282 (507)
Q Consensus 203 ~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~ 282 (507)
+..+..+.+.+.++++.|++++.++.+|+++...+..... ..+......+...+|...+...+.+.++++.+....
T Consensus 147 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~----~~g~~~~~~g~~~~~~~~e~~~~~~~~~~a~~~~~~ 222 (426)
T 2z00_A 147 DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVM----NDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRR 222 (426)
T ss_dssp TTSCCCCHHHHHHHHHHHGGGTCCEEECCCCHHHHTTCSE----ECSHHHHHHTCCEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhhhhh----ccCccchhcccccCChHHHHHHHHHHHHHHhhcccc
Confidence 3334678999999999999999999999987554321111 111222223344566666766777777777650000
Q ss_pred CCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCe
Q 010547 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 362 (507)
Q Consensus 283 ~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~ 362 (507)
. ..+.++++.|++.. ...+.++.+++.|+.+++++||+++.++.+.+...+...+..|+++....+..+++++.+|++
T Consensus 223 ~-~~g~~~~i~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~plr~~~~~~~l~~~l~~G~~ 300 (426)
T 2z00_A 223 S-PATPRLHVQHLSTK-RGLELVREAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTL 300 (426)
T ss_dssp C-SSCCCEEETTCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGGGCCGGGCCSSCCCCHHHHHHHHHHHHHTSS
T ss_pred c-cCCCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhhccCceEEEeCCCCCHHHHHHHHHHHhCCCc
Confidence 0 02778999999986 778999999999999999999999888776665556667788999998889999999999999
Q ss_pred eEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCC
Q 010547 363 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHA 441 (507)
Q Consensus 363 ~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~A 441 (507)
++++||+.|+....+. .+|+..+.|+.+.+..++.++.. ....++|++++++++|.|||++||++ +|+|++||.|
T Consensus 301 ~~lgsD~~p~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~T~n~A~~lgl~-~G~l~~G~~A 376 (426)
T 2z00_A 301 DAIATDHAPHTLAEKE---KDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGLP-PLHLEEGAEA 376 (426)
T ss_dssp CEECCCBCCCCTTGGG---SCTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHHHHHHHHTHHHHHHHTCC-CCCSSTTSBC
T ss_pred EEEecCCCCCCHHHcc---CChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCC-cccccCCCCC
Confidence 9999999877655432 36777777888888877776664 34557999999999999999999997 9999999999
Q ss_pred cEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCc
Q 010547 442 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 442 Dlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
||||+|. .++.++.. .+.+... ++||.+....+.|..||++|++||++++
T Consensus 377 Dlvv~d~-~~~~~~~~-~~~~~~~-~~p~~g~~~~~~v~~t~v~G~~v~~~~~ 426 (426)
T 2z00_A 377 SLVLLSP-KERPVDPS-AFASKAR-YSPWAGWVLGGWPVLTLVAGRIVHEALK 426 (426)
T ss_dssp CEEEEEC-CCEECCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEECCC
T ss_pred CEEEEeC-CcEEEcHH-HccccCC-CCCcCCCEEEEEEEEEEECCEEEEecCC
Confidence 9999998 66777665 6666777 9999999999999999999999999875
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=389.30 Aligned_cols=421 Identities=27% Similarity=0.401 Sum_probs=290.5
Q ss_pred CCCcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCC
Q 010547 39 LLPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116 (507)
Q Consensus 39 ~~~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~ 116 (507)
.+++++++|+|++|+++++ +.+++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+...+..+.+
T Consensus 43 ~~~mm~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~~----~~~~~iD~~g~~v~PGlID~H~H~~~~~~~~~~ 118 (467)
T 1xrt_A 43 DRWMLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILV----PEAEIIDAKGLIVCPGFIDIHVHLRDPGQTYKE 118 (467)
T ss_dssp ---CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCCC----SSEEEEECTTSEEEECEEEEEECCCTTTCTTTC
T ss_pred ccceeeEEEEeeEEECCCCCceecceEEEECCEEEEecCCCCC----CCCcEEeCCCCEEccCEEEEeecccCCCCCchh
Confidence 3556678999999998765 4589999999999999976431 256899999999999999999999876555567
Q ss_pred ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC-CcccHHHHHHHHHcCCcEEEE
Q 010547 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKS 195 (507)
Q Consensus 117 ~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 195 (507)
.+....+.++++||||+++++ .+.+.....+.+....+.......+++...+++... .....+++.++.+.|+.+++.
T Consensus 119 ~~~~~~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~g~~~i~~ 197 (467)
T 1xrt_A 119 DIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSLKEAGCVAFTD 197 (467)
T ss_dssp CHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSSSBCCHHHHHHHTCCCBCC
T ss_pred hHHHHHHHHHhCCeEEEEecC-CCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCCcccHHHHHHHHHcCCEEEEc
Confidence 788888999999999999997 555555556666666665554433455554433221 112233445555556554432
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHH
Q 010547 196 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 275 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 275 (507)
.+.+..+.+.++++++.|++++.++.+|+++...+...+ +.+......+....+...+...+.+.+.+
T Consensus 198 -------~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l-----~~g~~~~~~g~~~~~~~~e~~~~~~~~~~ 265 (467)
T 1xrt_A 198 -------DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVI-----NEGEVSALLGLSSRAPEAEEIQIARDGIL 265 (467)
T ss_dssp -------TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC-------------------------CHHHHHHHHHHH
T ss_pred -------CCCCCCCHHHHHHHHHHHHhcCCEEEEECCCHHHHHHHH-----hcCccchhcccccCChHHHHHHHHHHHHH
Confidence 233467899999999999999999999998755432111 11111122223344544555566666666
Q ss_pred HHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHH
Q 010547 276 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWE 355 (507)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 355 (507)
.... +.++|+.|++.. ...+.++.+++.|+.+++.+||+++.++.+.+...+...+..|++|.......+++
T Consensus 266 ~~~~-------g~~~hi~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~ 337 (467)
T 1xrt_A 266 AQRT-------GGHVHIQHVSTK-LSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIE 337 (467)
T ss_dssp HHHH-------CCEEEESCCCSH-HHHHHHHHHHHTTCCEEEEECGGGGC----------------------CCHHHHHH
T ss_pred HHHh-------CCCEEEEeCCCH-HHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhhccCceEEEcCCCCCHHHHHHHHH
Confidence 6654 888999999986 67999999999999889999999988877766555666778888888888889999
Q ss_pred HHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcC-CCHHHHHHHHhhchhHHhCCCCCCc
Q 010547 356 ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVSKGA 434 (507)
Q Consensus 356 ~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-ls~~~al~~~T~n~A~~lgl~~~G~ 434 (507)
++++|+++++|||+.++....+. .|...+.|+.+.+..+..++. ..+.| +|++++++++|.|||++||++ +|+
T Consensus 338 ~l~~Gv~~~lgTD~~~~~~~~~~----~~~~~~~g~~g~e~~l~~~l~-~~~~g~ls~~~al~~aT~n~A~~lgl~-~G~ 411 (467)
T 1xrt_A 338 GVKRGIIDCFATDHAPHQTFEKE----LVEFAMPGIIGLQTALPSALE-LYRKGIISLKKLIEMFTINPARIIGVD-LGT 411 (467)
T ss_dssp HHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHHHTCS-CSC
T ss_pred HHhCCceEEEeeCCCCCChhHhc----ccccCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHhccCHHHHhCCC-ccc
Confidence 99999999999999877554321 255666788888877776666 55666 999999999999999999997 999
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
|++||.||||++|.++.+.++.. .+.++.. ++||.++...+.|..||++|++||+|
T Consensus 412 I~~G~~ADlvvld~~~~~~i~~~-~~~~~~~-~~p~~g~~~~~~V~~viv~G~~v~~~ 467 (467)
T 1xrt_A 412 LKLGSPADITIFDPNKEWILNEE-TNLSKSR-NTPLWGKVLKGKVIYTIKDGKMVYKD 467 (467)
T ss_dssp CCTTSBCCEEEEEEEEEEECSTT-TCCSSCC-CCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred ccCCCCCCEEEEeCCCCEEEChH-HccCcCC-CCCccCCEEeEEEEEEEECCEEEecC
Confidence 99999999999999888887766 6666777 89999998899999999999999975
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=347.58 Aligned_cols=394 Identities=19% Similarity=0.206 Sum_probs=279.5
Q ss_pred CCcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG 117 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~ 117 (507)
.++++++|+|++|+|+++ ...++|+|+||||++|++.... .+.++||++|++|+|||||+|+|+........
T Consensus 4 ~~~~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~~~~~~-- 77 (480)
T 3gip_A 4 AEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAH----PARHAWDASGKIVAPGFIDVHGHDDLMFVEKP-- 77 (480)
T ss_dssp -CCEEEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTTS----CEEEEEECTTSEEEECEEESSCCCTTHHHHST--
T ss_pred cccCCEEEECcEEECCCCCeeeeeEEEEECCEEEEecCCCCC----CCCeEEECCCCEEccCEEeccccccccccCCh--
Confidence 456789999999999887 4689999999999999986532 26789999999999999999999865311111
Q ss_pred hhHHHHHHHhCCceEEEeCCC--------CCCCCCCC---------HHHHHHHHHHHh-cCceeeEEEecccc-------
Q 010547 118 FPSGTKAAAAGGITTLIDMPL--------NSDPSTIS---------TETLKLKVDAAE-KRIYVDVGFWGGLV------- 172 (507)
Q Consensus 118 ~~~~~~~~l~~GvTt~~~~~~--------~~~p~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~------- 172 (507)
.....+++||||+++..+ .+.|.... .+.+..+.+.+. .+..+++.++.+..
T Consensus 78 ---~~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~ 154 (480)
T 3gip_A 78 ---DLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAM 154 (480)
T ss_dssp ---TCHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHC
T ss_pred ---hHHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccCHHHHHHHHHhCCCCceEEEccccHHHHHHhc
Confidence 123558999999998421 11111111 133555555544 45677887765442
Q ss_pred -----CCCcccHHHHHHHH----HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhc
Q 010547 173 -----PENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 243 (507)
Q Consensus 173 -----~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 243 (507)
...++..+++.++. +.|+.+++.++.+... ...+.+++.++.+.+++++.++.+|+++...
T Consensus 155 g~~~~~~~~~~l~~m~~l~~~~~~~Ga~g~~~~~~y~p~---~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~------- 224 (480)
T 3gip_A 155 RDPQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPG---AVAQAAELEGLARVAAERRRLHTSHIRNEAD------- 224 (480)
T ss_dssp SSTTSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSTTG---GGCCHHHHHHHHHHHHHTTCEEEEECSCSST-------
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHCCCcEEeecCccCCc---ccCCHHHHHHHHHHHHHcCCEEEEEecCccc-------
Confidence 11223344444444 6899999997654311 1358899999999999999999999976432
Q ss_pred ccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC--------hhHHHHHHHHHHhCCCCE
Q 010547 244 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD--------ASSSLDLLMEAKTNGDSI 315 (507)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~--------~~~~~~~i~~~~~~g~~i 315 (507)
.+.+++.+.+.++++. |.++|+.|++. ....++.++.+++.|+.+
T Consensus 225 --------------------~~~~a~~e~i~la~~~-------g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~~~G~~V 277 (480)
T 3gip_A 225 --------------------GVEAAVEEVLAIGRGT-------GCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEV 277 (480)
T ss_dssp --------------------THHHHHHHHHHHHHHH-------CCEEEETTCCCCSGGGTTTHHHHHHHHHHHHHTTCCE
T ss_pred --------------------cHHHHHHHHHHHHHHh-------CCCEEEEEEeccCccchhhHHHHHHHHHHHHHcCCce
Confidence 3566788889998876 89999999983 228999999999999999
Q ss_pred EEecccccccccccCCCCCCCceeEc-------CCCCC-----------hhhHHHHHHH-----------------HhcC
Q 010547 316 TVETCPHYLAFSAEEIPDGDTRFKCA-------PPIRD-----------AANKEKLWEA-----------------LMDG 360 (507)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~-----------~~~~~~~~~~-----------------l~~G 360 (507)
+++++|+++.++...+.......+.. |+++. ....+.+.++ +.++
T Consensus 278 t~e~~p~~~~~t~~~l~~~~~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~~~~~~~~~ 357 (480)
T 3gip_A 278 ALDIYPYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQH 357 (480)
T ss_dssp EEEECSCSCEEEECCGGGTTTSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHS
T ss_pred EEEeeccccCcchhhhcCHHHHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHHHHHHHHcC
Confidence 99999999999887776655555555 66632 1222333322 3334
Q ss_pred CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 010547 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 438 (507)
Q Consensus 361 ~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G 438 (507)
....+|||+.+.... ........++.++.. .+ ...+|++++++++|.|||++||++++|+|++|
T Consensus 358 ~~~~~gsD~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~t~~~a~~~g~~~~G~l~~G 423 (480)
T 3gip_A 358 PCCMVGSDGLPNDAR--------------PHPRLWGSFTRVLGRYVREARLMTLEQAVARMTALPARVFGFAERGVLQPG 423 (480)
T ss_dssp TTEEECCCCCTTCSS--------------CCTHHHHHHHHHHHCCCCCTCSSCHHHHHHHHTHHHHHHHTCTTCSSCSTT
T ss_pred CCeEEecCCcccCCC--------------CChhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHcCCCCCCccCCC
Confidence 455778887654321 111222334555543 33 24599999999999999999999667999999
Q ss_pred CCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCccccc
Q 010547 439 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 506 (507)
Q Consensus 439 ~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~~ 506 (507)
+.|||+++|++..++.. ....+ ....+.|..||++|++||++|++++ .+|++||.
T Consensus 424 ~~AD~vv~d~~~~~~~~-----~~~~~-------~~~~~~v~~v~v~G~~v~~~g~~~~-~~G~~lr~ 478 (480)
T 3gip_A 424 AWADVVVFDPDTVADRA-----TWDEP-------TLASVGIAGVLVNGAEVFPQPPADG-RPGQVLRA 478 (480)
T ss_dssp SBCCEEEECTTTCBCCC-----CSSST-------TCCCBSEEEEEETTEEEESSCCSSS-CCCCBCCC
T ss_pred CCCCEEEEcCccccCcc-----ccccc-------cccCCCccEEEECCEEEEECCeEcC-CCCcCcCC
Confidence 99999999998754321 11222 2223569999999999999999999 99999985
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=321.03 Aligned_cols=391 Identities=16% Similarity=0.155 Sum_probs=259.9
Q ss_pred ceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhH
Q 010547 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~ 120 (507)
++++|+|++|+++++ ..+++|+|+||||++|++.... .+.++||++|++|+|||||+|+|+..+.... .
T Consensus 21 ~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~~----~~~~~iD~~g~~v~PG~iD~H~H~~~~~~~~-----~ 91 (496)
T 1rk6_A 21 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSAS----SARRRIDVAGKVVSPGFIDSHTHDDNYLLKH-----R 91 (496)
T ss_dssp BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTTS----CBSCEEECTTCEEEECEEESSCCCTTHHHHC-----T
T ss_pred ccEEEECCEEEeCCCCceeccEEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEeeeeecCCcccccc-----H
Confidence 468999999999876 4688999999999999976421 2568999999999999999999987642211 2
Q ss_pred HHHHHHhCCceEEEeCCCC--CCCCC--C--------------CHHHHHHHHHHHhc-CceeeEEEeccc----------
Q 010547 121 GTKAAAAGGITTLIDMPLN--SDPST--I--------------STETLKLKVDAAEK-RIYVDVGFWGGL---------- 171 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~~~~--~~p~~--~--------------~~~~~~~~~~~~~~-~~~~~~~~~~~~---------- 171 (507)
..+.++++||||+++++++ ..|.. + ....+....+.+.. ...+++....+.
T Consensus 92 ~~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~~~~~~~ 171 (496)
T 1rk6_A 92 DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVNAACMVGHSTLRAAVMPD 171 (496)
T ss_dssp TCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSC
T ss_pred HHHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHhccCCccceEEecccccceeeeccc
Confidence 3467899999999987532 22321 1 01223333333332 333444332211
Q ss_pred cCC--CcccHHH----HHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhccc
Q 010547 172 VPE--NAYNASA----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 245 (507)
Q Consensus 172 ~~~--~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 245 (507)
... .....+. +++..+.|+.+++....+.. .+..+.+++.++++.+++++.++.+|+++...
T Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~---~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~--------- 239 (496)
T 1rk6_A 172 LRREATADEIQAMQALADDALASGAIGISTGAFYPP---AAHASTEEIIEVCRPLITHGGVYATHMRDEGE--------- 239 (496)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGG---GTTCCHHHHHHHHTHHHHHTCEEEEECSCSST---------
T ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEeeccccCC---CCCCCHHHHHHHHHHHHHcCCEEEEEeCCCcc---------
Confidence 011 1122223 33334688888876432210 12457889999999999999999999964321
Q ss_pred CcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC--------hhHHHHHHHHHHhCCCCEEE
Q 010547 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD--------ASSSLDLLMEAKTNGDSITV 317 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~--------~~~~~~~i~~~~~~g~~i~~ 317 (507)
.+.+.+.+.++++.+. |.++|+.|+.. .+...+.++.++..| .+++
T Consensus 240 ------------------~~~~~l~~~~~~a~~~-------g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~~~g-~v~~ 293 (496)
T 1rk6_A 240 ------------------HIVQALEETFRIGREL-------DVPVVISHHKVMGKLNFGRSKETLALIEAAMASQ-DVSL 293 (496)
T ss_dssp ------------------THHHHHHHHHHHHHHH-------TSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHS-CEEE
T ss_pred ------------------cHHHHHHHHHHHHHHc-------CCeEEEEEEeccCCcchhhHHHHHHHHHHHHHcC-CeEE
Confidence 3556677888888876 88899999842 225677888888888 8888
Q ss_pred ecccccccccccCCCCC----CCceeEcCCC--------------CChhhHHHHHHHHhcCC-----------------e
Q 010547 318 ETCPHYLAFSAEEIPDG----DTRFKCAPPI--------------RDAANKEKLWEALMDGH-----------------I 362 (507)
Q Consensus 318 ~~~~~~~~~~~~~~~~~----~~~~~~~p~~--------------~~~~~~~~~~~~l~~G~-----------------~ 362 (507)
+.+++....+...+... +..+..+|+. +.......+++++.+|+ .
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~p~~~~l~~~~l~~~~~~~g~~~~~~l~~~l~~G~i~~~~~~~~v~~~~~~~~ 373 (496)
T 1rk6_A 294 DAYPYVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGP 373 (496)
T ss_dssp EECSCSCEEEECCCCTTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTT
T ss_pred EEeccCCCCCcccHHHhcCccceEEeccCCCcccccCcHHHHHHHcCCCHHHHHHHHHhcCceeecCCHHHHHHHHcCCC
Confidence 87876655443333221 1333334432 22334566677888887 5
Q ss_pred eEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-h-cCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 363 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-K-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 363 ~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
+++|||+.+++... .......++.++.... + ..+|++++++++|.|||++||++++|+|++|+.
T Consensus 374 ~~iGTD~~~~~~~~--------------~~~~~~~~~~~l~~~v~~~~~l~~~~~l~~~T~~~A~~lgl~~~G~i~~G~~ 439 (496)
T 1rk6_A 374 TMIGSDGLPHDERP--------------HPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERGQVQPGYY 439 (496)
T ss_dssp EEECCCCCTTCSSC--------------CTHHHHHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCSSCCTTSB
T ss_pred EEEecCCCCCCCCC--------------CchhhccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCc
Confidence 79999987653110 0111222333333223 2 349999999999999999999966899999999
Q ss_pred CcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCccccc
Q 010547 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 506 (507)
Q Consensus 441 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~~ 506 (507)
|||+++|++...+.+. + .+++ ...+.|..||++|++||++|++++.+.|++++.
T Consensus 440 ADlv~~d~~~~~~~~~---~------~~~~---~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~l~~ 493 (496)
T 1rk6_A 440 ADLVVFDPATVADSAT---F------EHPT---ERAAGIHSVYVNGAAVWEDQSFTGQHAGRVLNR 493 (496)
T ss_dssp CCEEEECTTTCBCCCC---S------SSTT---CCCBSEEEEEETTEEEEETTEECSCCCCCBCCC
T ss_pred ccEEEEcCcccccccc---c------cccc---ccCCCceEEEECCEEEEECCeeccCCCceEeec
Confidence 9999999886432211 0 1222 123569999999999999999999999999874
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=299.67 Aligned_cols=327 Identities=20% Similarity=0.207 Sum_probs=262.8
Q ss_pred CCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCce-eeEEEecc
Q 010547 92 GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGG 170 (507)
Q Consensus 92 ~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (507)
.|++|+||+||+|+|+.. +. .......++++||||++++| ++.|.....+.+....+.+..... +++.++++
T Consensus 22 ~~~~vlPG~ID~HvHlre-G~-----~~~e~~aA~aGG~Ttvi~mP-nt~P~~~~~~~~~~~~~~a~~~~~~vd~~~~~~ 94 (359)
T 3pnu_A 22 SNAMKLKNPLDMHLHLRD-NQ-----MLELIAPLSARDFCAAVIMP-NLIPPLCNLEDLKAYKMRILKACKDENFTPLMT 94 (359)
T ss_dssp SCCEEEESCEEEEECCCS-HH-----HHHHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCcEEccCcEEccccCCC-CC-----cchhHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHHhccCCCceEEEeee
Confidence 489999999999999987 32 23344588899999999999 899999999999988888776666 88888887
Q ss_pred --ccCCCcccHHHHHHHHHcCCcEEEEcccCCC---CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhccc
Q 010547 171 --LVPENAYNASALEALLNAGVLGLKSFMCPSG---INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 245 (507)
Q Consensus 171 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 245 (507)
+. ....+++.++.+. +.++|.|+.... ..+.+..+.+.++++++.++++|.++.+|+|+...+.
T Consensus 95 l~lt---~~~~~el~~l~~~-v~~~Kl~~aga~~~s~~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~------- 163 (359)
T 3pnu_A 95 LFFK---NYDEKFLYSAKDE-IFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVM------- 163 (359)
T ss_dssp EECS---CCCHHHHHHHTTT-CSEEEECBTTSSSSCTTSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGG-------
T ss_pred eEec---CCCHHHHHHHHHh-hhehhheeCCCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhH-------
Confidence 65 2245677777766 889999874311 1233455899999999999999999999999876421
Q ss_pred CcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccc
Q 010547 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~ 325 (507)
..|..++.+.+.++++ .+|.++|+.|++++ +++++++.+ .++++++||||+.
T Consensus 164 -----------------~~E~~ai~r~~~la~~------~~g~~lhi~HvSt~-~~v~~I~~A----~~VtaEv~phhL~ 215 (359)
T 3pnu_A 164 -----------------DRESNFAKIYEKLAKH------FPRLKIVMEHITTK-TLCELLKDY----ENLYATITLHHLI 215 (359)
T ss_dssp -----------------GTTGGGHHHHHHHHHH------CTTSCEEECSCCSH-HHHHHHHHC----TTEEEEECSGGGT
T ss_pred -----------------HHHHHHHHHHHHHHHH------cCCCcEEEEecCcH-HHHHHHHhc----CCceEEEechhhE
Confidence 0244567788888875 34889999999998 999999886 6799999999999
Q ss_pred ccccCCC--CCCCceeEcCCCCChhhHHHHHHHHhcCCee-EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH
Q 010547 326 FSAEEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402 (507)
Q Consensus 326 ~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~-~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (507)
++.+++. ..++.++++||+|...+++.+++++.+|.++ +++||++|+...+|... | ...|+.+++..++.++
T Consensus 216 lt~~~~~~~~~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~~---~--g~~Gi~~~~~~L~l~~ 290 (359)
T 3pnu_A 216 ITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKECC---G--CAAGVFSAPVILPVLA 290 (359)
T ss_dssp CCHHHHHTSSCCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC---------C--CCSCBCCGGGHHHHHH
T ss_pred EcHHHhcCcCCCCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCCC---C--CCCChhhHHHHHHHHH
Confidence 9999875 3588999999999999999999999999999 79999999988876432 2 3568888888888877
Q ss_pred HHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccc-cCcEEeeEEE
Q 010547 403 SYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 480 (507)
Q Consensus 403 ~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~ 480 (507)
... +.+++++++++.+|.|||+++|++. .+| |||+|+| ..|.++.. .+.++.. ++|| .|..+.|+|.
T Consensus 291 ~~~-~~~~~l~~lv~~~s~nPAki~gL~~----~~G--Adlvl~d--~~~~v~~~-~~~s~~~-~tPf~~G~~l~G~v~ 358 (359)
T 3pnu_A 291 ELF-KQNSSEENLQKFLSDNTCKIYDLKF----KED--KILTLEE--KEWQVPNV-YEDKYNQ-VVPYMAGEILKFQLK 358 (359)
T ss_dssp HHH-HHHSCHHHHHHHHTHHHHHHHTCCC----SSC--CEEEEEC--CCEECCSC-EECSSCE-ECCTTTTCEESCEEC
T ss_pred HHH-hhcCCHHHHHHHHHHhHHHHhCCCC----CCC--CeEEEEe--cCEEeCch-hcccCCC-ccccCCCCEEEEEEe
Confidence 755 4456999999999999999999932 134 9999999 67888877 7788888 9999 9999988874
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=304.44 Aligned_cols=356 Identities=16% Similarity=0.112 Sum_probs=224.9
Q ss_pred cceEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC----
Q 010547 42 YNQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---- 114 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~---- 114 (507)
+.+++|+|++|+|+++ ..+++|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+.......
T Consensus 3 m~~~~i~n~~i~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~---~~~~~iD~~g~~v~PGliD~H~H~~~~~~~~~~~~ 79 (426)
T 2r8c_A 3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKS---SNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVA 79 (426)
T ss_dssp -CEEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCC---SSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHH
T ss_pred cccEEEEeeEEEeCCCCcccCCceEEEECCEEEEEcCCCCCC---CCCeEEECCCCEEcCCeEeeeeccccccCCchhhc
Confidence 4578999999999864 34789999999999999864332 3789999999999999999999998764311
Q ss_pred -CCC------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccc----------------
Q 010547 115 -WEG------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL---------------- 171 (507)
Q Consensus 115 -~~~------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 171 (507)
.+. .....+.++++||||+++++ +. . ..+....+.....+ ..+...+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~-----~-~~l~~~i~~~~~~g-pri~~~g~~i~~~~g~~~~~~~~~~ 151 (426)
T 2r8c_A 80 TLPNVLVTLRAVPIMRAMLRRGFTTVRDAG-GA-----G-YPFKQAVESGLVEG-PRLFVSGRALSQTGGHADPRARSDY 151 (426)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTEEEEEECS-SC-----C-HHHHHHHHTTSSCC-CEEEECCSEEECTTSTTCCCCCSSB
T ss_pred cCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-Cc-----h-HHHHHHHHcCCCCC-CeEEecCCcccCCCCCccccccccc
Confidence 010 11335677999999999986 21 1 13333333221111 111111100
Q ss_pred -------------------cCCCcccHHHHHHHHHcCCcEEEEcccC-----CCCCCCCCCCHHHHHHHHHHHHhcCCcE
Q 010547 172 -------------------VPENAYNASALEALLNAGVLGLKSFMCP-----SGINDFPMTNASHIKEGLSVLARYKRPL 227 (507)
Q Consensus 172 -------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~a~~~~~~v 227 (507)
....++..+.+++..+.|+..+|.+... ..+.+.+..++++++++++.|+++|.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v 231 (426)
T 2r8c_A 152 MPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYV 231 (426)
T ss_dssp CCCSCSSSSBCCTTCCEEECCSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCE
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEE
Confidence 0111123455677777899999987531 1123344689999999999999999999
Q ss_pred EEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHH
Q 010547 228 LVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLME 307 (507)
Q Consensus 228 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~ 307 (507)
.+|+.... .+...++. |. ..+.|+.. ...+.++.
T Consensus 232 ~~H~~~~~--------------------------------~i~~al~~-----------G~-~~i~H~~~--~~~~~~~~ 265 (426)
T 2r8c_A 232 LAHAYTPA--------------------------------AIARAVRC-----------GV-RTIEHGNL--IDDETARL 265 (426)
T ss_dssp EEEECSHH--------------------------------HHHHHHHT-----------TC-SEEEECTT--CCHHHHHH
T ss_pred EEEeCChH--------------------------------HHHHHHHc-----------CC-CEEecCCc--CCHHHHHH
Confidence 99995321 22333332 22 24677765 34456777
Q ss_pred HHhCCCCEEEecccccccccccCCCCCCCceeEcCC----CC--ChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhcccc
Q 010547 308 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP----IR--DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE 381 (507)
Q Consensus 308 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~--~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~ 381 (507)
+++.|+.+..........+..... ...+|. +. .......+.++++.|+++++|||+.+.....
T Consensus 266 ~~~~gv~~~pt~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~~~~~~----- 334 (426)
T 2r8c_A 266 VAEHGAYVVPTLVTYDALASEGEK------YGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRL----- 334 (426)
T ss_dssp HHHTTCEEECCTHHHHHHHHHTTT------TTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGGGGG-----
T ss_pred HHHcCCeEeechHHHHHHhhhccc------cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCcc-----
Confidence 778887653221111111110000 000110 00 1234566788899999999999976322111
Q ss_pred CCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCc
Q 010547 382 GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPV 460 (507)
Q Consensus 382 ~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~ 460 (507)
+...+....+ .+|++++++++|.|||++||+ +++|+|++||.|||||+|.|+..++. .
T Consensus 335 ----------------~~~e~~~~~~-~l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~p~~~~~----~ 393 (426)
T 2r8c_A 335 ----------------QSDEFRILAE-VLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVD----C 393 (426)
T ss_dssp ----------------TTHHHHHHTT-TSCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGG----G
T ss_pred ----------------hHHHHHHHHh-cCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCCEEEECCChHhCHH----H
Confidence 0111222333 399999999999999999999 66899999999999999987543221 0
Q ss_pred ccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC
Q 010547 461 HMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~ 497 (507)
.... ..+|..||++|++|+++++...
T Consensus 394 ~~~~-----------~~~v~~v~~~G~~v~~~~~~~~ 419 (426)
T 2r8c_A 394 LLGQ-----------GEHIPLVMKDGRLFVNELEGHE 419 (426)
T ss_dssp TCSS-----------STTCCEEEETTEEEEETTC---
T ss_pred HhCc-----------CCcceEEEECCEEEeccccccc
Confidence 0010 0268999999999999887654
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=307.74 Aligned_cols=375 Identities=14% Similarity=0.096 Sum_probs=225.7
Q ss_pred CCcceEEEEecEEECCCC----------ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCC
Q 010547 40 LPYNQYWLTSKRIVTPKG----------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~----------~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 109 (507)
.++++++|+|++|+++++ +.+++|+|+||+|++|++... ..+.+.++||++|++|+|||||+|+|+..
T Consensus 20 ~~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~--~~~~~~~viD~~g~~v~PGlID~H~H~~~ 97 (468)
T 3lnp_A 20 KAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSS--CQIPATETLDLGQQVLMPGWVNAHGHAAM 97 (468)
T ss_dssp -CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTT--CCCCEEEEEECCSEEEEECEEECSCCGGG
T ss_pred CccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCcc--ccCCCCeEEeCCCcEEEeCeechhhChhh
Confidence 446789999999998753 348999999999999998765 11236789999999999999999999943
Q ss_pred C---CCC---------------------CCCCh----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCc
Q 010547 110 P---GRT---------------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 161 (507)
Q Consensus 110 ~---~~~---------------------~~~~~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 161 (507)
. +.. +.+.+ ......++++||||+.++. ...+.+.+.......+.
T Consensus 98 ~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-------~~~~~~~~~~~~~g~r~ 170 (468)
T 3lnp_A 98 SLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMY-------FYPQQSGEAALAAGIRA 170 (468)
T ss_dssp GGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECC-------SCHHHHHHHHHHHTCEE
T ss_pred hhhccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-------cCHHHHHHHHHHcCCeE
Confidence 2 110 00111 1234567899999999874 12233333333332222
Q ss_pred eeeEEEeccccCCC----cccHHHHHHHHH--cCCc-----EEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEe
Q 010547 162 YVDVGFWGGLVPEN----AYNASALEALLN--AGVL-----GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (507)
Q Consensus 162 ~~~~~~~~~~~~~~----~~~~~~~~~~~~--~g~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 230 (507)
........ ..... ....+...++.+ .+.. .++..+.+ ...+..+++.+.++++.|+++|.++.+|
T Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~~H 246 (468)
T 3lnp_A 171 VCFAPVLD-FPTNYAQNADEYIRKAIECNDRFNNHPMNEQGLVQIGFGP---HAPYTVSDEPLKEITMLSDQLDMPVQIH 246 (468)
T ss_dssp EEEEEECS-SCCSSCSSHHHHHHHHHHHHHHHHSCGGGTTCCEEEEEEE---CCTTTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEeccccC-CCcccccCHHHHHHHHHHHHHHhhcCCcccCceEEEEEEc---CCCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 22222211 11111 111222222222 1211 22222222 3334678999999999999999999999
Q ss_pred cCCcc-cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHH
Q 010547 231 AEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK 309 (507)
Q Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~ 309 (507)
+.+.. .+...+...+ ...++.+.+.+ ..+.+..+.|+... ..+.++.++
T Consensus 247 ~~e~~~~~~~~~~~~g------------------------~~~i~~~~~~g----~l~~~~~~~H~~~~--~~~~~~~l~ 296 (468)
T 3lnp_A 247 LHETDFEVSESLETFN------------------------KRPTQRLADIG----FLNERVSCVHMTQV--DDGDIKILQ 296 (468)
T ss_dssp ESCSHHHHHHHHHHHS------------------------SCHHHHHHHTT----CCSTTEEEEECCSC--CHHHHHHHH
T ss_pred eCCCHHHHHHHHHHhC------------------------CCHHHHHHHcC----CCCCCeEEEeccCC--CHHHHHHHH
Confidence 95432 1111111000 01122222221 11556777888763 334566677
Q ss_pred hCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCC
Q 010547 310 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 389 (507)
Q Consensus 310 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 389 (507)
+.|+.+. +||...... + ....++.++++.|+++++|||+.+.+...+
T Consensus 297 ~~g~~v~--~~p~s~~~~-------~------------~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~------------ 343 (468)
T 3lnp_A 297 KTGASII--HCPESNLKL-------A------------SGFCPIAKLSAANIPLAIGTDGAASNNDLD------------ 343 (468)
T ss_dssp HHCCEEE--ECHHHHHHT-------T------------CCCCCHHHHHHTTCCEEECCCCTTSSCCCC------------
T ss_pred hcCCEEE--EChhhhhhc-------C------------CCCCCHHHHHHCCCeEEEECCCCcCCCCCC------------
Confidence 7776554 355321110 0 001134677889999999999876532111
Q ss_pred CCchhhh-HHHHHHHHH---HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCC
Q 010547 390 GISSLQF-VLPVTWSYG---RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 464 (507)
Q Consensus 390 ~~~~~~~-~l~~~~~~~---~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~ 464 (507)
.++. .+...+... ...++|++++++++|.|||++||+ +++|+|++||.|||||||.+..+..+.
T Consensus 344 ---~~~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~-------- 412 (468)
T 3lnp_A 344 ---MFSETKTAALLAKGVSQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPV-------- 412 (468)
T ss_dssp ---HHHHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSC--------
T ss_pred ---HHHHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCccCCc--------
Confidence 1111 111111111 145899999999999999999999 568999999999999999886553321
Q ss_pred CCCccccCc---EEeeEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 465 PSISAYLGR---RLSGKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 465 ~~~~~~~~~---~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
.+++..+ ...+.|..||++|++||++|++++.+.++.
T Consensus 413 --~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~ 452 (468)
T 3lnp_A 413 --FDPVSHMVYCTKSTQVSHVWVNGRCLLKNGELTTLNEETL 452 (468)
T ss_dssp --SCHHHHHHHSCCGGGEEEEEETTEEEEETTEESSSCHHHH
T ss_pred --cCHHHHhhccCCCCCceEEEECCEEEEECCeECCCCHHHH
Confidence 2222222 123579999999999999999988765543
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=308.87 Aligned_cols=376 Identities=15% Similarity=0.098 Sum_probs=228.3
Q ss_pred CcceEEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC---C
Q 010547 41 PYNQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---T 113 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~---~ 113 (507)
++++++|+|++|+|+++ +.+++|+|+||+|++|++..+.+ .+.+.++||++|++|+|||||+|+|+..... .
T Consensus 4 ~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~-~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~ 82 (447)
T 4f0r_A 4 SRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAA-GLEADERLELPDHVLMPGLINLHGHSAMSLLRGLA 82 (447)
T ss_dssp -CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHT-TSCEEEEEEEEEEEEEECEEEEEECGGGGGGTTSS
T ss_pred CcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEecccccc-cCCCCeEEeCCCcEEeeCccchhhChhhHhhccCC
Confidence 46789999999998764 45899999999999999865443 2236789999999999999999999943211 1
Q ss_pred C---------------------CCChh----HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe
Q 010547 114 E---------------------WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168 (507)
Q Consensus 114 ~---------------------~~~~~----~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (507)
. .+.+. .....++++||||+.++. ...+...+.......+..+.....
T Consensus 83 ~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-------~~~~~~~~~~~~~g~r~~~~~~~~ 155 (447)
T 4f0r_A 83 DDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMY-------FYNAAVARAGLASGMRTFVGCSIL 155 (447)
T ss_dssp CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECB-------SCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-------cCHHHHHHHHHHcCCeEEEEchhc
Confidence 0 01111 234567899999999874 122333333333322322222222
Q ss_pred ccccC---CCcccHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcc-cchhhhh
Q 010547 169 GGLVP---ENAYNASALEALLNA--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVK 242 (507)
Q Consensus 169 ~~~~~---~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~-~~~~~~~ 242 (507)
..... ......+...++.+. |...++..+.+ ...+..+++.+.++++.|+++|.++.+|+.+.. .+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~ 232 (447)
T 4f0r_A 156 EFPTNYASNADDYIAKGMAERSQFLGEDLLTFTLAP---HAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVK 232 (447)
T ss_dssp SSCCSSCSSHHHHHHHHHHHHHTTTTCTTEEEEEEE---CCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHHHHHHhcCCCceEEEEec---CCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Confidence 10001 111222333344332 43333333322 222357899999999999999999999996542 1111111
Q ss_pred cccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccc
Q 010547 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~ 322 (507)
..+ ...++.+.+.+ ..+.+..+.|+.. ...+.++.+++.|+.+.. ||.
T Consensus 233 ~~g------------------------~~~i~~~~~~g----~~~~~~~~~H~~~--~~~~~~~~~~~~g~~~~~--~p~ 280 (447)
T 4f0r_A 233 EHG------------------------QRPLARLQRLG----LLSPRLVAAHMVH--LNDAEVELAARHGLSTAH--NPA 280 (447)
T ss_dssp HHS------------------------SCHHHHHHHHT----CCSTTEEEEECCS--CCHHHHHHHHHHTCEEEE--CHH
T ss_pred HcC------------------------CCHHHHHHHcC----CCCCCcEEEeccC--CCHHHHHHHHHcCCEEEE--Cch
Confidence 000 00122222221 1145677888876 334556777777765543 553
Q ss_pred cccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhh-HHHHH
Q 010547 323 YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVT 401 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 401 (507)
...... ....++.++++.|++++++||+.+.+... ..++. .+...
T Consensus 281 ~~~~~~-------------------~~~~~~~~~~~~Gv~v~lgTD~~~~~~~~---------------~~~~~~~~~~~ 326 (447)
T 4f0r_A 281 SNMKLA-------------------SGISPVSKLMDAGVAVGIGTDGAASNNKL---------------DMLAETRLAAL 326 (447)
T ss_dssp HHHHTT-------------------CCCCCHHHHHHTTCEEEECCCCGGGTCCC---------------CHHHHHHHHHH
T ss_pred hhhhcC-------------------CCCCcHHHHHHCCCcEEEeCCCCcCCCCC---------------CHHHHHHHHHH
Confidence 211000 00113567788999999999987542111 11111 11111
Q ss_pred HHHH---HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCc---E
Q 010547 402 WSYG---RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR---R 474 (507)
Q Consensus 402 ~~~~---~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 474 (507)
.... ...++|++++++++|.|||++||+ +++|+|++||.||||+||.+..+..+. .+++..+ .
T Consensus 327 ~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~~~~~ 396 (447)
T 4f0r_A 327 LAKVGTLDPTSVPAAAAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPA----------FDPISHVVYAA 396 (447)
T ss_dssp HHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSC----------SCHHHHHHHTC
T ss_pred HhhhhccCCCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCCC----------cChHHHheecC
Confidence 2211 145899999999999999999999 568999999999999999886553321 2222221 1
Q ss_pred EeeEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 475 LSGKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 475 ~~~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
..+.|..||++|++||++|++++.+.++.
T Consensus 397 ~~~~v~~v~v~G~~v~~~g~~~~~d~~~~ 425 (447)
T 4f0r_A 397 GREQVSHVWVKGRALMRERKLTTLDESDL 425 (447)
T ss_dssp CGGGEEEEEETTEEEEETTEESSSCHHHH
T ss_pred CCCCceEEEECCEEEEECCeECcCCHHHH
Confidence 22479999999999999999998776554
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=305.51 Aligned_cols=357 Identities=16% Similarity=0.099 Sum_probs=220.6
Q ss_pred cceEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC----
Q 010547 42 YNQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---- 114 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~---- 114 (507)
+.+++|+|++|+|+++ ..+++|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+.......
T Consensus 3 ~~~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~---~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~ 79 (423)
T 3feq_A 3 LTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDL---PNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNA 79 (423)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEECSCCCC---SSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHH
T ss_pred ceEEEEEccEEEeCCCCcccCCceEEEECCEEEEecCCCCCC---CCCeEEeCCCCEECCCeeeeEeeecccCCChhhhh
Confidence 5688999999999975 34789999999999999864333 3789999999999999999999998764310
Q ss_pred -CC------ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec-------c----------
Q 010547 115 -WE------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-------G---------- 170 (507)
Q Consensus 115 -~~------~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------- 170 (507)
.+ ......+.++++||||+++++ +. . ..+....+.....+ ..+...+ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~-----~-~~l~~~~~~~~~~g-~r~~~~g~~~~~~~g~~~~~~~~~~ 151 (423)
T 3feq_A 80 TQPNILAAIRSLPILDAMLSRGFTSVRDAG-GA-----D-WSLMQAVETGLVSG-PRIFPSGKALSQTGGHGDFRPRGDL 151 (423)
T ss_dssp HSCHHHHHHTHHHHHHHHHHTTEEEEEECS-SC-----C-HHHHHHHHTTSSCS-CEEECCCSEEECTTSTTCCCCC---
T ss_pred cCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-Cc-----h-HHHHHHHHcCCCCC-CeEEecCcccccCCCCccccccccc
Confidence 01 112345677999999999986 21 1 23333333322111 1111100 0
Q ss_pred ---------------ccCCCcccHHHHHHHHHcCCcEEEEcccCC-----CCCCCCCCCHHHHHHHHHHHHhcCCcEEEe
Q 010547 171 ---------------LVPENAYNASALEALLNAGVLGLKSFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (507)
Q Consensus 171 ---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 230 (507)
.....++..+.++++.+.|+..+|.+.... .+.+.+..++++++++++.|+++|.++.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H 231 (423)
T 3feq_A 152 LEPCSCCFRTGAIARVVDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAH 231 (423)
T ss_dssp CCCCCSSCCTTCSEEECCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccccccccccccceecCCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEE
Confidence 011112234566777788999999875311 123344689999999999999999999999
Q ss_pred cCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHh
Q 010547 231 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 310 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~ 310 (507)
+.+. ..+...++. |.. .+.|+.. ...+.++.+++
T Consensus 232 ~~~~--------------------------------~~i~~~l~~-----------g~~-~i~H~~~--~~~~~~~~l~~ 265 (423)
T 3feq_A 232 AYTG--------------------------------RAIARAVRC-----------GVR-TIEHGNL--VDEAAAKLMHE 265 (423)
T ss_dssp EEEH--------------------------------HHHHHHHHH-----------TCC-EEEEEEE--CCHHHHHHHHH
T ss_pred eCCh--------------------------------HHHHHHHHc-----------CCC-EEeccCc--CCHHHHHHHHH
Confidence 9522 123344432 211 3445443 22345666667
Q ss_pred CCCCEEEecccccccccccCCCCCCCceeEcCCCCCh------hhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCc
Q 010547 311 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 384 (507)
Q Consensus 311 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~ 384 (507)
.|+.+..........+.. ......+|..... .....+.++++.|+++++|||+.......
T Consensus 266 ~gv~~~pt~~~~~~~~~~------~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~gTD~~~~~~~~-------- 331 (423)
T 3feq_A 266 HGAFVVPTLVTYDALAKH------GAEFGMPPESVAKVASVQQKGRESLEIYANAGVKMGFGSDLLGEMHAF-------- 331 (423)
T ss_dssp HTCEEECCTHHHHHHHHH------TGGGTCCTTTSSTHHHHHHHHHHHHHHHHHHTCCBCCCCCCCGGGGGG--------
T ss_pred CCCccccchHHHHHHHhc------ccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCcc--------
Confidence 776553221111111100 0001112221111 23456778888999999999976321110
Q ss_pred cccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccC
Q 010547 385 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 463 (507)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~ 463 (507)
+...+....+. +|++++++++|.|||++||+ +++|+|++||.||||++|.|+..++. ....
T Consensus 332 -------------~~~e~~~~~~~-ls~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~p~~~~~----~~~~ 393 (423)
T 3feq_A 332 -------------QSGEFRIRAEV-LGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIG----VVAD 393 (423)
T ss_dssp -------------TTHHHHHHHTT-SCHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTTCGG----GTSS
T ss_pred -------------hHHHHHHHHhh-CCHHHHHHHHHHHHHHHhCCCCCceeECCCCcCCEEEECCChhhCHH----HHhc
Confidence 01112223444 99999999999999999999 66899999999999999987533221 1111
Q ss_pred CCCCccccCcEEeeEEEEEEECCEEEEecCcccCC
Q 010547 464 HPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 498 (507)
Q Consensus 464 ~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~ 498 (507)
.. .+|..||++|++||++++....
T Consensus 394 ~~-----------~~v~~v~~~G~~v~~~~~~~~~ 417 (423)
T 3feq_A 394 EG-----------ARVEYVLQRGTLVKRQAAGREG 417 (423)
T ss_dssp ST-----------TSEEEEEETTEEEEEC------
T ss_pred cC-----------CCceEEEECCEEEeCCcccccc
Confidence 00 2699999999999999887653
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=304.66 Aligned_cols=377 Identities=14% Similarity=0.105 Sum_probs=226.3
Q ss_pred CCcceEEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC--
Q 010547 40 LPYNQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-- 113 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~-- 113 (507)
.++++++|+|++|+++++ +.+++|+|+||||++|++..+.. .+.++++||++|++|+|||||+|+|+......
T Consensus 5 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~-~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~ 83 (451)
T 4dyk_A 5 RNPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAM-RHGATEIRELPGMLLAPGLVNAHGHSAMSLFRGL 83 (451)
T ss_dssp -CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHHT-TTCEEEEEEEEEEEEEECEEECCCCGGGGGGTTS
T ss_pred cchhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCccccc-cCCCCeEEeCCCCEEeecccchhhChhhHHhccC
Confidence 446789999999999653 35799999999999999865431 12367899999999999999999999432111
Q ss_pred ----------------------CCCChh----HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEE
Q 010547 114 ----------------------EWEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167 (507)
Q Consensus 114 ----------------------~~~~~~----~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (507)
+.+.+. .....++++||||+.++. ...+.+.+.......+.......
T Consensus 84 ~~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-------~~~~~~~~a~~~~g~r~~~~~~~ 156 (451)
T 4dyk_A 84 ADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMY-------FYPQAICGVVHDSGVRAQVAIPV 156 (451)
T ss_dssp SCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-------SCHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-------cCHHHHHHHHHHcCCeEEEEchh
Confidence 011111 234456799999999874 12333333333333232222222
Q ss_pred eccccCCC----cccHHHHHHHHH--cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcc-cchhh
Q 010547 168 WGGLVPEN----AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERH 240 (507)
Q Consensus 168 ~~~~~~~~----~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~-~~~~~ 240 (507)
.. ..... ....+...++.+ .+...++..+.+ ...+..+++.+.++++.|+++|.++.+|+.+.. .+...
T Consensus 157 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~ 232 (451)
T 4dyk_A 157 LD-FPIPGARDSAEAIRQGMALFDDLKHHPRIRIAFGP---HAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQA 232 (451)
T ss_dssp CS-SCBTTBSSHHHHHHHHHHHHHHTTTCSSEEEEEEE---CCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHH
T ss_pred hC-CCCccccCHHHHHHHHHHHHHHhcCCCceEEEEec---CCCCccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHH
Confidence 11 11111 112223333322 122222222222 233457889999999999999999999985432 11111
Q ss_pred hhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecc
Q 010547 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 320 (507)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~ 320 (507)
+...+ ...++.+.+.+ ..+.+..+.|+... ..+.++.+++.|+.+.. |
T Consensus 233 ~~~~g------------------------~~~i~~~~~~g----~~~~~~~~~H~~~~--~~~~~~~l~~~g~~v~~--~ 280 (451)
T 4dyk_A 233 MERNG------------------------ERPLARLHRLG----LLGPRFQAVHMTQV--DNDDLAMLVETNSSVIH--C 280 (451)
T ss_dssp HHHHS------------------------SCHHHHHHHTT----CCSTTEEEEECCCC--CHHHHHHHHHHTCEEEE--C
T ss_pred HHHhC------------------------CCHHHHHHHCC----CCCCCeEEEECCCC--CHHHHHHHHHcCCEEEE--C
Confidence 10000 01122222221 11456777888763 33456677777765543 5
Q ss_pred cccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhH-HH
Q 010547 321 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LP 399 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 399 (507)
|...... + ....++.++++.|+++++|||+.+.+...+ .++.. +.
T Consensus 281 p~s~~~~-------~------------~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~---------------~~~~~~~~ 326 (451)
T 4dyk_A 281 PESNLKL-------A------------SGFCPVEKLWQAGVNVAIGTDGAASNNDLD---------------LLGETRTA 326 (451)
T ss_dssp HHHHHHT-------T------------CCCCCHHHHHHHTCCEEECCCCGGGSSCCC---------------HHHHHHHH
T ss_pred hhhhhhc-------c------------CCcccHHHHHhCCCeEEEECCCCccCCCCC---------------HHHHHHHH
Confidence 5321110 0 001124567888999999999875422111 11111 11
Q ss_pred HHHHHH---HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcE-
Q 010547 400 VTWSYG---RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR- 474 (507)
Q Consensus 400 ~~~~~~---~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~- 474 (507)
...... ...++|++++++++|.|||++||+ +++|+|++||.||||++|.+..+..+ . .+|+..+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~---------~-~~~~~~~~~ 396 (451)
T 4dyk_A 327 ALLAKAVYGQATALDAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQP---------V-YDPVSQLIY 396 (451)
T ss_dssp HHHHHHHHTCTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEECCSGGGCS---------C-SCHHHHHHH
T ss_pred HHHhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCcCcCCCCcCCEEEEeCCCCccCC---------C-CCHHHHhhc
Confidence 111111 145799999999999999999999 56899999999999999988644221 1 33333332
Q ss_pred --EeeEEEEEEECCEEEEecCcccCCCCCccc
Q 010547 475 --LSGKVLATISRGNLVYKEGNHAPAACGSPI 504 (507)
Q Consensus 475 --~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~ 504 (507)
....|..||++|++||++|+++..+.++.+
T Consensus 397 ~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~ 428 (451)
T 4dyk_A 397 ASGRDCVRHVWVGGRQLLDDGRLLRHDEQRLI 428 (451)
T ss_dssp HCCGGGEEEEEETTEEEEETTEESSSCHHHHH
T ss_pred cCCCCCccEEEECCEEEEECCEECcCCHHHHH
Confidence 124699999999999999999987766543
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=303.64 Aligned_cols=373 Identities=14% Similarity=0.105 Sum_probs=221.5
Q ss_pred EEEEec-EEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC----
Q 010547 45 YWLTSK-RIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW---- 115 (507)
Q Consensus 45 ~~i~n~-~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~---- 115 (507)
++|+|+ .|+++++ +.+++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+........
T Consensus 2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~~~ 78 (456)
T 3ls9_A 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDR---SVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLE 78 (456)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCCCT---TCSEEEECTTEEEEECEEEEEECGGGGGGBTCGGGS
T ss_pred EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCCCC---CCCeEEeCCCCEEecCeeecccccchhhhcccccCC
Confidence 789999 7777765 46899999999999999874422 36889999999999999999999964322100
Q ss_pred -CCh-----------------------------hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeE
Q 010547 116 -EGF-----------------------------PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (507)
Q Consensus 116 -~~~-----------------------------~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 165 (507)
..+ ......++++||||+.++. ...+.......+....++........+
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~a~~~~g~r~~ 157 (456)
T 3ls9_A 79 RVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQH-LFFPGATADSYIDATIEAATDLGIRFH 157 (456)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEE-CCCCSSSCCTHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHhCCeeEEEecc-ccccCcccchhHHHHHHHHHHcCCEEE
Confidence 000 1123457899999999985 333333212222233333322111111
Q ss_pred EEeccccC--------------CCcccHHHHHHHHH-------cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 010547 166 GFWGGLVP--------------ENAYNASALEALLN-------AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224 (507)
Q Consensus 166 ~~~~~~~~--------------~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 224 (507)
...+.... ......+...++.+ .+...+.. .+ ...+..+++.++++++.|+++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~~a~~~g 232 (456)
T 3ls9_A 158 AARSSMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIAL--GP---CGVPYDKPELFEAFAQMAADYD 232 (456)
T ss_dssp EEECCCCCCGGGTCSSCGGGCCCHHHHHHHHHHHHHHHCCCSTTCSEEEEE--CC---CCTTTSCHHHHHHHHHHHHHHT
T ss_pred EEccccccccccccCCccccccCHHHHHHHHHHHHHHhhCcCCCCceEEEE--ec---CCCCCCCHHHHHHHHHHHHHCC
Confidence 11111111 00111233333332 22222222 22 3345678999999999999999
Q ss_pred CcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHH
Q 010547 225 RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDL 304 (507)
Q Consensus 225 ~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~ 304 (507)
.++.+|+.+...........+ ....+...+.+ ..+.+..+.|+... ..+.
T Consensus 233 ~~v~~H~~e~~~~~~~~~~~~------------------------~~~~~~~~~~g----~~~~~~~i~H~~~~--~~~~ 282 (456)
T 3ls9_A 233 VRLHTHFYEPLDAGMSDHLYG------------------------MTPWRFLEKHG----WASDRVWLAHAVVP--PREE 282 (456)
T ss_dssp CEEEEEECCTTHHHHHHHHHS------------------------SCHHHHHHHTT----CSSTTEEEEECCSC--CGGG
T ss_pred CCEEEEeCCCchHHHHHHHhC------------------------CCHHHHHHHcC----CCCCCcEEEeccCC--CHHH
Confidence 999999955432110000000 00122222221 11445667777652 2234
Q ss_pred HHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCc
Q 010547 305 LMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 384 (507)
Q Consensus 305 i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~ 384 (507)
++.+++.|+.+. +||....... ....++.++++.|+++++|||+.+++...++
T Consensus 283 ~~~l~~~g~~~~--~~p~s~~~l~-------------------~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~------ 335 (456)
T 3ls9_A 283 IPEFADAGVAIA--HLIAPDLRMG-------------------WGLAPIREYLDAGITVGFGTTGSASNDGGNL------ 335 (456)
T ss_dssp HHHHHHHTCEEE--ECHHHHHHTT-------------------CCCCCHHHHHHTTCEEEECCCCTTSSCCCCH------
T ss_pred HHHHHHcCCEEE--EChhHHhhcC-------------------CCcchHHHHHHCCCcEEEECCCCccCCCCCH------
Confidence 666666676554 4664211110 0011345778899999999998764322111
Q ss_pred cccCCCCchhhhHHHHHHHHHH---hc----CCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCC
Q 010547 385 LKAWGGISSLQFVLPVTWSYGR---KY----GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 457 (507)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~~---~~----gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~ 457 (507)
++. +........ .. +++++++++++|.|||++||++++|+|++||.|||||+|.++.+..+
T Consensus 336 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~~-- 403 (456)
T 3ls9_A 336 ---------LGD-LRLAALAHRPADPNEPEKWLSARELLRMATRGSAECLGRPDLGVLEEGRAADIACWRLDGVDRVG-- 403 (456)
T ss_dssp ---------HHH-HHHHHHHTGGGSTTCGGGSCCHHHHHHHTTHHHHHHTTCTTSSCCSTTSBCCEEEEESCSGGGTT--
T ss_pred ---------HHH-HHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEeCCCCccCC--
Confidence 111 111111111 11 79999999999999999999944999999999999999988644321
Q ss_pred CCcccCCCCCccccCcEEe---eEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 458 HPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
. .+|+..+... ..|..|||+|++||++|+++..+..+.
T Consensus 404 -------~-~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~ 444 (456)
T 3ls9_A 404 -------V-HDPAIGLIMTGLSDRASLVVVNGQVLVENERPVLADLERI 444 (456)
T ss_dssp -------B-SSHHHHHHHCCSBCCCSEEEETTEEEEETTEESSSCHHHH
T ss_pred -------C-CChHHHhhccCCCCCeeEEEECCEEEEECCEeCCCCHHHH
Confidence 1 3343333221 369999999999999999998765543
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=294.42 Aligned_cols=356 Identities=17% Similarity=0.125 Sum_probs=220.2
Q ss_pred CCcceEEEEecEEECCCC---ceeeeEEEe-CCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKG---VISGAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW 115 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~---~~~~~I~I~-dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~ 115 (507)
.++++++|+|++|+++++ ..+++|+|+ ||||++|++..+.+ .+.++||++|++|+|||||+|+|+..+....+
T Consensus 12 ~~~~~~li~n~~vv~~~~~~~~~~~~v~I~~~g~I~~Ig~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~ 88 (417)
T 2ogj_A 12 PLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAP---ADTQRIDAKGAFISPGWVDLHVHIWHGGTDIS 88 (417)
T ss_dssp --CCCEEEEEEEECSSCTTCCCSCEEEEECTTSBEEEEETTCCCS---SCEEECCC--CEEEECEEEEEECCCBTTBSSC
T ss_pred cCCCcEEEECCEEEcCCCCccCccceEEEecCCEEEEeccCCCCC---CCCeEEECCCCEEccCeeeccccccccccccC
Confidence 344679999999999876 358999999 99999999764322 14579999999999999999999987654433
Q ss_pred CChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHH-HHHHHhcCceeeEEEec---cccC-----CCc----ccHHHH
Q 010547 116 EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL-KVDAAEKRIYVDVGFWG---GLVP-----ENA----YNASAL 182 (507)
Q Consensus 116 ~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~-----~~~----~~~~~~ 182 (507)
+. ..+.++++||||+++++ +..+ ...+.+.. ..+... ..+...... +... ... ...+.+
T Consensus 89 ~~---~~~~~l~~GvTtv~d~~-~~~~--~~~~~~~~~~~~~~~--~~i~~~~~~~~~G~~~~~~~~e~~~~~~~~~~~~ 160 (417)
T 2ogj_A 89 IR---PSECGAERGVTTLVDAG-SAGE--ANFHGFREYIIEPSR--ERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRI 160 (417)
T ss_dssp CC---GGGTSGGGTEEEEEEES-SCCS--TTHHHHHHHTTTTCS--SEEEEEEESSTTTTTTTTTSCSCSSGGGCCHHHH
T ss_pred CC---HHHHHHhCCcCeEEeCC-cCCC--cCHHHHHHHHhhccc--cCeEEEeccccCcCCCCCCcccccchhhcCHHHH
Confidence 22 23457899999999875 3222 23333222 111111 111111111 1211 000 123455
Q ss_pred HHHHHc---CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCC
Q 010547 183 EALLNA---GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 259 (507)
Q Consensus 183 ~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (507)
+++.+. +..+++.++... .....+.+.+.++++.|++++.++.+|++....
T Consensus 161 ~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~----------------------- 214 (417)
T 2ogj_A 161 LECYAENSEHIVGLKVRASHV---ITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPA----------------------- 214 (417)
T ss_dssp HHHHHTCTTTEEEEEEEESHH---HHTTCTTHHHHHHHHHHHHHTCCEEEEECSSSS-----------------------
T ss_pred HHHHHhCCCceEEEEEEecCC---ccccccHHHHHHHHHHHHHcCCcEEEEcCCCcc-----------------------
Confidence 555553 345677665421 112457788899999999999999999954221
Q ss_pred CChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh---------hHHHHHHHHHHhCCCCEEEecccccccccccC
Q 010547 260 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---------SSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (507)
Q Consensus 260 ~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~---------~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~ 330 (507)
.++.....+.. + ..+.|+... ....+.+..+++.|+.+ ..++...
T Consensus 215 --------~~~~~~~~l~~--------g--~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v--~~~~~~~------ 268 (417)
T 2ogj_A 215 --------LYDEVLEILGP--------G--DVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRL--DIGHGGA------ 268 (417)
T ss_dssp --------CHHHHHHHCCT--------T--CEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEE--ECCBCSS------
T ss_pred --------cHHHHHHHhcC--------C--CEEEeccCCCccchhccCHHHHHHHHHHHhcCcEE--EecCCCc------
Confidence 01122222211 2 345565431 13445666666666543 2233110
Q ss_pred CCCCCCceeEcCCCCChhhHHHHHHHHhcC-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcC
Q 010547 331 IPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 409 (507)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 409 (507)
......+.+++++| ++++++||+. .+.. .++. ..+...+....+.+
T Consensus 269 ----------------~~~~~~~~~~~~~G~~~~~lgtD~~-~~~~-----~g~~-----------~~l~~~~~~~~~~~ 315 (417)
T 2ogj_A 269 ----------------SFSFKVAEAAIARGLLPFSISTDLH-GHSM-----NFPV-----------WDLATTMSKLLSVD 315 (417)
T ss_dssp ----------------SCCHHHHHHHHHTTCCCSBCCBCBS-TTTT-----TTTC-----------CCHHHHHHHHHHTT
T ss_pred ----------------cccchHHHHHHHcCCCceEEEcCCC-CCcc-----CCCh-----------hHHHHHHHHHHHcC
Confidence 01245678888999 9999999976 4311 0110 01444444445578
Q ss_pred CCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee----EEEEEEEC
Q 010547 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISR 485 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~V~~v~v~ 485 (507)
++++++++++|.|||++||++++|+|++||.||||++|.+..+.. ..++.+..+.+ .|..||++
T Consensus 316 l~~~~al~~~T~n~A~~lgl~~~G~l~~G~~ADlvv~d~~~~~~~------------~~~~~g~~~~~~~~~~v~~t~v~ 383 (417)
T 2ogj_A 316 MPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLE------------ATDSNGDVSRLKRLFEPRYAVIG 383 (417)
T ss_dssp CCHHHHHHTTTHHHHHHTTCCCSSTTSTTSBCEEEEEEEEEEEEE------------EECTTSCEEEEEEEEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCccCCCCcccEEEEecccCCce------------ecCCCCceEecccccceEEEEEC
Confidence 999999999999999999995499999999999999997654321 33445555555 79999999
Q ss_pred CEEEEecCcccCCCCCcccc
Q 010547 486 GNLVYKEGNHAPAACGSPIL 505 (507)
Q Consensus 486 G~~v~~~g~~~~~~~~~~~~ 505 (507)
|++||++|+++..+ ++++
T Consensus 384 G~~v~~~~~~~~~~--~~~~ 401 (417)
T 2ogj_A 384 AEAIAASRYIPRAR--KLVR 401 (417)
T ss_dssp TEEEECCCCCCCC-------
T ss_pred CEEEEeCCccchHH--HHHH
Confidence 99999999998755 5554
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=300.92 Aligned_cols=375 Identities=13% Similarity=0.069 Sum_probs=224.0
Q ss_pred CcceEEEEecEEECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC--
Q 010547 41 PYNQYWLTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-- 114 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~-- 114 (507)
++.+++|+|++|+++++ +.+++|+|+||||++|++..+.+..+.+.++||++|++|+|||||+|+|+.......
T Consensus 12 ~~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~ 91 (472)
T 4dzh_A 12 EPCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVA 91 (472)
T ss_dssp EEEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHHEEEEEEEEEEEEEEEECEEEEEECGGGGGGTTSS
T ss_pred CcCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhcCCCCeEEeCCCcEEEECccccccChhhHHhcccc
Confidence 35789999999998763 458999999999999998654321112568999999999999999999996532110
Q ss_pred -------C---------------CCh----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe
Q 010547 115 -------W---------------EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168 (507)
Q Consensus 115 -------~---------------~~~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (507)
| +.+ ......++++||||+.++. ...+...+.......+..+.....
T Consensus 92 ~~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-------~~~~~~~~a~~~~g~r~~~~~~~~ 164 (472)
T 4dzh_A 92 DDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENY-------FFADVQAAVYKQHGFRALVGAVII 164 (472)
T ss_dssp CSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-------SCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-------cCHHHHHHHHHHhCCeEEEEeccc
Confidence 0 001 1133458999999999874 122333333222222222222221
Q ss_pred ccccCC-C---cccHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhh
Q 010547 169 GGLVPE-N---AYNASALEALLNA--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHV 241 (507)
Q Consensus 169 ~~~~~~-~---~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~ 241 (507)
. +... . .+..+...++.+. +...++..+.+ ...+..+++.++++++.|+++|.++.+|+.+... +...+
T Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~ 240 (472)
T 4dzh_A 165 D-FPTAWASSDDEYFARAGELHDQWRDDPLISTAFAP---HAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSV 240 (472)
T ss_dssp S-SCCSSCSSHHHHHHHHHHHHHHHTTCSSEEEEEEE---CCTTTSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHH
T ss_pred C-CCcccccCHHHHHHHHHHHHHHhCCCCceEEEEec---CCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 1 1111 1 1122223333221 22122222222 3334578999999999999999999999854321 11111
Q ss_pred hcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccc
Q 010547 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 321 (507)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~ 321 (507)
...+ .+.++.+.+.+ ..+.+..+.|+... ..+.++.+++.|+.+.. ||
T Consensus 241 ~~~g------------------------~~~i~~~~~~g----~~~~~~~~~H~~~l--~~~~i~~l~~~g~~v~~--~p 288 (472)
T 4dzh_A 241 AQYG------------------------QRPLARLDRLG----LVNDRLIAVHMTQL--TEAEIHLCAERGVSVVH--CP 288 (472)
T ss_dssp HHHS------------------------SCHHHHHHHHT----CCSTTEEEEECCSC--CHHHHHHHHHHTCEEEE--CH
T ss_pred HHhC------------------------CCHHHHHHHcC----CCCCCeEEEeccCC--CHHHHHHHHHcCCEEEE--Ch
Confidence 0000 00122222221 11456778888763 33456677777766543 55
Q ss_pred ccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhh-HHHH
Q 010547 322 HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPV 400 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 400 (507)
...... + ....++.++++.|+++++|||+.+.+...+ .++. .+..
T Consensus 289 ~s~~~~-------~------------~~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~---------------~~~~~~~a~ 334 (472)
T 4dzh_A 289 ESNLKL-------A------------SGFCPACALQRASVNLAIGTDGCASNNDLD---------------MFSENRTAA 334 (472)
T ss_dssp HHHHHT-------T------------CCCCCHHHHHHTTCEEEECCCCTTSSCCCC---------------HHHHHHHHH
T ss_pred HHHHhc-------C------------CCCccHHHHHHCCCCEEEECCCCcCCCCCC---------------HHHHHHHHH
Confidence 321110 0 001135677889999999999875422211 1111 1111
Q ss_pred HHHHH---HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcE--
Q 010547 401 TWSYG---RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR-- 474 (507)
Q Consensus 401 ~~~~~---~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 474 (507)
.+... ...++|++++++++|.|||++||+ +++|+|++||.|||||+|.+..+..+ . ++|+..+.
T Consensus 335 ~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~---------~-~~~~~~l~~~ 404 (472)
T 4dzh_A 335 ILAKAVANDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQP---------L-HHVLSQLIYA 404 (472)
T ss_dssp HHHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCS---------C-SCHHHHHHHT
T ss_pred HHhhhhcCCCCcCCHHHHHHHHHHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCCccCC---------c-cCHHHHHhhc
Confidence 11111 124799999999999999999999 66899999999999999988644221 1 33333332
Q ss_pred -EeeEEEEEEECCEEEEecCcccCCCCCc
Q 010547 475 -LSGKVLATISRGNLVYKEGNHAPAACGS 502 (507)
Q Consensus 475 -~~~~V~~v~v~G~~v~~~g~~~~~~~~~ 502 (507)
....|..||++|++||++|++++.+..+
T Consensus 405 ~~~~~V~~v~v~G~~v~~~g~~~~~d~~~ 433 (472)
T 4dzh_A 405 AGRHQVTDVWIAGKPKLVQRELIDMDTAA 433 (472)
T ss_dssp CCGGGEEEEEETTEEEEETTEETTCCHHH
T ss_pred CCCCCceEEEECCEEEEECCEECcCCHHH
Confidence 2246999999999999999998766544
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=291.83 Aligned_cols=353 Identities=18% Similarity=0.196 Sum_probs=220.6
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCC-CEEecceeecccccCCCCCCCCCChhH
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g-~~v~PGfID~H~H~~~~~~~~~~~~~~ 120 (507)
+++++|+|++|++++ +++|+|+||||++|++.... .+.++||++| ++|+|||||+|+|+..+....++ .
T Consensus 4 ~~~~~i~~~~v~~~~---~~~v~i~~g~I~~ig~~~~~----~~~~~iD~~g~~~v~PG~ID~H~H~~~~~~~~~~---~ 73 (379)
T 2ics_A 4 DYDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATISG----SAKETIHLEPGTYVSAGWIDDHVHCFEKMALYYD---Y 73 (379)
T ss_dssp CEEEEEEEEECTTSC---EEEEEEETTEEEEEESCCCC----CEEEEEECCTTCEEEECEEEEEECCCTTSSSSCC---C
T ss_pred cccEEEECCEEEcCC---cceEEEECCEEEEecCCCCC----CCCcEEeCCCCEEEccCEEEeccccCccCccccC---c
Confidence 357899999999965 78999999999999976421 2467999999 99999999999999876543333 3
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe--ccccCC--C----cccHHHHHHHHH---cC
Q 010547 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW--GGLVPE--N----AYNASALEALLN---AG 189 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~----~~~~~~~~~~~~---~g 189 (507)
..+.++++||||+++++ ... ....+.+.+..+....+.. .+... .+..+. . ....+.++++.+ .+
T Consensus 74 ~~~~~~~~GvTtv~d~~-~~~--~~~~~~~~~~~~~~~~~i~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (379)
T 2ics_A 74 PDEIGVKKGVTTVIDAG-TTG--AENIHEFYDLAQQAKTNVF-GLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDF 149 (379)
T ss_dssp HHHHTGGGTEEEEEEES-SSC--TTTHHHHHHHHHTSSSEEE-EEEESSTTTTSSSCTTSSGGGCCHHHHHHHHHHCTTT
T ss_pred hhhhHhhCceeEEEcCC-CCC--ccCHHHHHHHHHhhcccEE-EEccccccCCCCHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 45678999999999875 221 2334444444433221111 11111 122221 1 112355555554 46
Q ss_pred CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHh-cCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHH
Q 010547 190 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268 (507)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 268 (507)
+.+++.+.... ..+..+.+.+.++++.|++ ++.++.+|+......
T Consensus 150 ~~~i~~~~~~~---~~~~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~------------------------------- 195 (379)
T 2ics_A 150 VVGIKARMSRT---VIGDNGITPLELAKQIQQENQEIPLMVHIGSAPPH------------------------------- 195 (379)
T ss_dssp EEEEEEEESHH---HHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSSC-------------------------------
T ss_pred ceEEEEecccc---ccccchHHHHHHHHHHHHHhcCCeEEEeCCCCcch-------------------------------
Confidence 77777765321 1124677889999999999 999999999642210
Q ss_pred HHHHHHHHHhh-ccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh
Q 010547 269 IRELLTVAKDT-RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347 (507)
Q Consensus 269 ~~~~~~l~~~~-~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (507)
........+.- ...-...+.+.|+.|.++. ...+.++.+++.|+. +.++|....
T Consensus 196 ~~~~~~~~~~g~~~~H~~~~~~~~~~~~s~~-~~~~~~~~~~~~g~~--~~~~p~~~~---------------------- 250 (379)
T 2ics_A 196 LDEILALMEKGDVLTHCFNGKENGILDQATD-KIKDFAWQAYNKGVV--FDIGHGTDS---------------------- 250 (379)
T ss_dssp HHHHHHHCCTTCEEESTTCCSTTSSEETTTT-EECHHHHHHHHTTCE--EECCCTTTS----------------------
T ss_pred HHHHHHHhhcCCeeeeccCCCccchhhccCH-HHHHHHHHHHHcCCE--EEecCCCCC----------------------
Confidence 01122221110 0000000112223333222 334677777777764 344543110
Q ss_pred hhHHHHHHHHhcC-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHH
Q 010547 348 ANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 426 (507)
Q Consensus 348 ~~~~~~~~~l~~G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~ 426 (507)
.....+.+++++| ..++++||+.+.+. . .++ ...+...+....+.++|++++++++|.|||++
T Consensus 251 ~~~~~~~~~~~~G~~~~~l~TD~~~~~~---~--~~~-----------~~~~~~~l~~~~~~~ls~~~~~~~~T~n~A~~ 314 (379)
T 2ics_A 251 FNFHVAETALREGMKAASISTDIYIRNR---E--NGP-----------VYDLATTMEKLRVVGYDWPEIIEKVTKAPAEN 314 (379)
T ss_dssp CCHHHHHHHHHTTCCCSBCCCCBCHHHH---H--SSS-----------CCCHHHHHHHHHHHTCCHHHHHHTTTHHHHHH
T ss_pred cCHHHHHHHHHcCCCcceEeccCcccCC---C--CCc-----------HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1234567888889 88999999752210 0 011 01133334444456899999999999999999
Q ss_pred hCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee----EEEEEEECCEEEEecCcc
Q 010547 427 AGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYKEGNH 495 (507)
Q Consensus 427 lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~V~~v~v~G~~v~~~g~~ 495 (507)
||++++|+|++||+|||+++|++..+.. +.++.+..+.+ .|..||++|++||++|.+
T Consensus 315 lgl~~~G~l~~G~~ADlvv~d~~~~~~~------------~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~ 375 (379)
T 2ics_A 315 FHLTQKGTLEIGKDADLTIFTIQAEEKT------------LTDSNGLTRVAKEQIRPIKTIIGGQIYDNEGHH 375 (379)
T ss_dssp TTCTTSSSCCTTSBCCEEEEEEEEEEEE------------EECTTSCEEEEEEEEEEEEEEETTEEEEC----
T ss_pred hCCCCCcCCCCCCccCEEEEecccccce------------eecCCCCEEEeeeeeeeEEEEECCEEEecCCcc
Confidence 9995599999999999999997654321 55667778888 899999999999999864
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=299.46 Aligned_cols=387 Identities=13% Similarity=0.090 Sum_probs=216.4
Q ss_pred CCCCcceEEEEecEEE-CCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 38 SLLPYNQYWLTSKRIV-TPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 38 ~~~~~~~~~i~n~~i~-~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
+...+.+++|+|++|+ |+|+ +.+++|+|+||||++||+..+.+. .++++||++|++|+|||||+|+|+.....
T Consensus 24 ~~~~p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~~~--~~~~vIDa~G~~v~PG~ID~H~H~~~~~~ 101 (479)
T 3hpa_A 24 SSSRPKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPE--TADEVLDLRGHLVIPGLVNTHHHMYQSLT 101 (479)
T ss_dssp -----CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGSCS--CCSEEEECTTEEEEECEEECCCCGGGGGS
T ss_pred CCCCCCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccCCC--CCCeEEECCCCEEeeCceeHhhCcchhcc
Confidence 3445678999999966 5443 458999999999999998776543 35789999999999999999999853211
Q ss_pred CC-----CCC-----------------------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceee
Q 010547 113 TE-----WEG-----------------------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164 (507)
Q Consensus 113 ~~-----~~~-----------------------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 164 (507)
.. ... .......+++.|+|++.+.. ..........................
T Consensus 102 ~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 180 (479)
T 3hpa_A 102 RAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHL-YIYPNGSRLDDSIGAAQRIGMRFHAS 180 (479)
T ss_dssp CSCTTTTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCB-CCCCTTCCHHHHHHHHHHHTCEEEEE
T ss_pred cccccCCCcchHHHHhhhhhhhhhcCHHHHHHHHHHHHHHHHHhCCceeccee-eeccchhhHHHHHHHHHHhcchhhhh
Confidence 10 000 11234567899999999875 33333333443333333222221111
Q ss_pred EEEeccccC-----------CCcccHHHHHHHHH----cCCcEEEE-cccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEE
Q 010547 165 VGFWGGLVP-----------ENAYNASALEALLN----AGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228 (507)
Q Consensus 165 ~~~~~~~~~-----------~~~~~~~~~~~~~~----~g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~ 228 (507)
......... ..........++.. .+...... ...+ ......+.+.+.++...+++.+..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~g~~~~ 257 (479)
T 3hpa_A 181 RGAMSVGQRDGGLPPDSVVEREPDILRDTQRLIETYHDEGRYAMLRVVVAP---CSPFSVSRDLMRDAAVLAREYGVSLH 257 (479)
T ss_dssp EEECC----------------CHHHHHHHHHHHHHHCCCSTTCSEEEEEEE---SCTTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred hheeeccccccCCCchhhhhhhhhHHHHHHHHHHHhhhhcccccceeEecc---cccccCCHHHHHHHHHHHHhcCCeEE
Confidence 111000000 00001111111111 11111111 1111 22345788999999999999999999
Q ss_pred EecCCccc-chhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHH
Q 010547 229 VHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLME 307 (507)
Q Consensus 229 ~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~ 307 (507)
+|...... +..... . .....+....+.. ..+....+.|+... . ......
T Consensus 258 ~h~~~~~~~~~~~~~----------------~----~g~~~~~~~~~~~--------~~~~~~~~~h~~~~-~-~~~~~~ 307 (479)
T 3hpa_A 258 THLAENVNDIAYSRE----------------K----FGMTPAEYAEDLG--------WVGHDVWHAHCVQL-D-DAGIGL 307 (479)
T ss_dssp EEESCSHHHHHC---------------------------CHHHHHHHTT--------CCSTTEEEEECTTC-C-HHHHHH
T ss_pred eecccchHHHHHHHH----------------H----cCCchHHHHhhhc--------cccccceeeeeEec-c-hhHHHH
Confidence 99743221 000000 0 0000111111111 12455677777653 1 122233
Q ss_pred HHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCcccc
Q 010547 308 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 387 (507)
Q Consensus 308 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~ 387 (507)
..+.+.... .+|........ + .......+..|+.+++|+|..+.+....
T Consensus 308 ~~~~~~~~~--~~p~~~~~~~~-----~--------------~~~~~~~~~~~~~v~~gtD~~~~~~~~~---------- 356 (479)
T 3hpa_A 308 FARTGTGVA--HCPCSNMRLAS-----G--------------IAPVKKMRLAGVPVGLGVDGSASNDGAQ---------- 356 (479)
T ss_dssp HHHHTCEEE--ECHHHHHHTTC-----C--------------CCCHHHHHHHTCCEEECCCCTTSSCCCC----------
T ss_pred HHhcCCcee--ecccccccccc-----C--------------ccchhHHHhcCCcEEeeccccccCCCcc----------
Confidence 333343332 23321111000 0 0112345667999999999876543211
Q ss_pred CCCCchhhhHHHHHHHH--HHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCC
Q 010547 388 WGGISSLQFVLPVTWSY--GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465 (507)
Q Consensus 388 ~~~~~~~~~~l~~~~~~--~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~ 465 (507)
...+......... ....++|++++++++|.|||++||++++|+|++||+|||||||++.++...+.
T Consensus 357 ----~~~~~~~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~G~I~~G~~ADlvv~D~~~~~~~~~~-------- 424 (479)
T 3hpa_A 357 ----MVAEVRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDIGALKPGMAADFAAFDLRQPLFAGAL-------- 424 (479)
T ss_dssp ----HHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTHHHHHHHTCSSSSSCSTTSBCCEEEEETTSGGGTTCT--------
T ss_pred ----HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHhCCCCCccCCCCCcCCEEEEcCCCccccCCc--------
Confidence 1111111111111 23457999999999999999999997799999999999999999875543222
Q ss_pred CCccccCcEE--eeEEEEEEECCEEEEecCcccCCCCCccc
Q 010547 466 SISAYLGRRL--SGKVLATISRGNLVYKEGNHAPAACGSPI 504 (507)
Q Consensus 466 ~~~~~~~~~~--~~~V~~v~v~G~~v~~~g~~~~~~~~~~~ 504 (507)
.+|+.++.+ .++|..|||+||+||+||++++.+.++.+
T Consensus 425 -~dp~~~lv~~~~~~v~~tiV~G~~V~~dG~~~~~D~~~~~ 464 (479)
T 3hpa_A 425 -HDPVAALVFCAPSQTAYTVVNGKVVVREGRLATLDLPPVI 464 (479)
T ss_dssp -TSHHHHHHHSSCCCCSEEEETTEEEEETTEECSSCHHHHH
T ss_pred -cCHHHHhhccCCCCceEEEECCEEEEECCcCCCCCHHHHH
Confidence 445443322 35799999999999999999988776654
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=299.79 Aligned_cols=377 Identities=17% Similarity=0.185 Sum_probs=218.5
Q ss_pred CcceEEEEecE-EECCC--------CceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC
Q 010547 41 PYNQYWLTSKR-IVTPK--------GVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (507)
Q Consensus 41 ~~~~~~i~n~~-i~~~~--------~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 111 (507)
+.++++|+|++ |+|++ .+.+++|+|+||||++|++..+ + .+.++||++|++|+|||||+|+|+..+.
T Consensus 8 ~~~~~li~n~~~i~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-~---~~~~viD~~G~~v~PG~ID~H~H~~~~~ 83 (492)
T 2paj_A 8 TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP-R---PGETIVDATDCVIYPAWVNTHHHLFQSL 83 (492)
T ss_dssp --CEEEEECBSEEBCCCCSSSSSCSBCCCCCEEEETTEEEEESSCCC-C---TTCEEEECBTCEEEECEECCCCCGGGGG
T ss_pred CCCCeEEECCEEEEecCCccccccceecccEEEEECCEEEEEcCCCC-C---CCCeEEECCCcEEeeCccccccChhhHh
Confidence 34678999999 99986 3457899999999999998653 1 2578999999999999999999986541
Q ss_pred CC-----------CC--------------CChhHH----HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCce
Q 010547 112 RT-----------EW--------------EGFPSG----TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY 162 (507)
Q Consensus 112 ~~-----------~~--------------~~~~~~----~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 162 (507)
.. .| +.+... ...++++||||+.+++ .+.+.....+.+....+......
T Consensus 84 ~~g~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~g- 161 (492)
T 2paj_A 84 LKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHN-YVYYPGMPFDSSAILFEEAEKLG- 161 (492)
T ss_dssp CCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECC-CCCCTTCSSCHHHHHHHHHHHTT-
T ss_pred hcCccCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEech-hhcccccccchHHHHHHHHHHcC-
Confidence 11 11 222222 3348999999999986 33332212223333333332221
Q ss_pred eeEEEeccccCCC----------------cccHHHHHHHHHc--CC---cEEEEcccCCCCCCC-CCCCHHHHHHHHHHH
Q 010547 163 VDVGFWGGLVPEN----------------AYNASALEALLNA--GV---LGLKSFMCPSGINDF-PMTNASHIKEGLSVL 220 (507)
Q Consensus 163 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--g~---~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a 220 (507)
+.+....+....+ ....+.+.++.+. +. ..++.++.+ .+. +..+++.+.++++.|
T Consensus 162 ~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~a 238 (492)
T 2paj_A 162 LRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAP---TTVLYSISPREMRETAAVA 238 (492)
T ss_dssp CEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECC---TTTTTSSCHHHHHHHHHHH
T ss_pred CEEEEEchhhcccccccccCCccccccCHHHHHHHHHHHHHHhccCCCCCceEEEEec---ccCCCCCCHHHHHHHHHHH
Confidence 2222211111100 0123334444432 11 113333332 333 467899999999999
Q ss_pred HhcCCcEEEecCCccc-chhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh
Q 010547 221 ARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299 (507)
Q Consensus 221 ~~~~~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~ 299 (507)
++.|.++.+|+.+... ++...... +.. .++...+.+ ..+.+..+.|+.+.
T Consensus 239 ~~~g~~v~~H~~~~~~~~~~~~~~~--------------g~~----------~~~~~~~~g----~~~~~~~i~H~~~~- 289 (492)
T 2paj_A 239 RRLGLRMHSHLSETVGYQDSAYSMY--------------GKS----------PVAFCGEHD----WLGSDVWYAHLVKV- 289 (492)
T ss_dssp HHTTCEEEEECC---------------------------CCC----------HHHHHHHTT----CCSTTEEEESCCSC-
T ss_pred HHcCCcEEEEeCCChHHHHHHHHHc--------------CCC----------HHHHHHHCC----CCCCCcEEEEEecC-
Confidence 9999999999965321 11110000 000 111111211 01334566777653
Q ss_pred HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhcc
Q 010547 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 379 (507)
Q Consensus 300 ~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~ 379 (507)
..+.++.+++.|+. +.+||..... + + ...|+++ +++++|+++++|||+.+.+...++
T Consensus 290 -~~~~i~~l~~~gv~--v~~~p~~~~~----l---~---~~~~p~~---------~~~~~Gv~v~lgTD~~~~~~~~~~- 346 (492)
T 2paj_A 290 -DADEIALLAQTGTG--VAHCPQSNGR----L---G---SGICPVR---------EMADAGVPVSIGVDGAASNEAADM- 346 (492)
T ss_dssp -CHHHHHHHHHHTCE--EEECHHHHHC----C-----------CCT---------THHHHTCCEEECCCHHHHCSCCSH-
T ss_pred -CHHHHHHHHHcCCE--EEECchhhcc----c---C---CCCCCHH---------HHHHCCCcEEEeCCCCCCCCCCCH-
Confidence 22346667677754 4456632100 0 0 1123443 357789999999997542111100
Q ss_pred ccCCccccCCCCchhhhHHHHH--HHHH-----------------HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 010547 380 DEGNFLKAWGGISSLQFVLPVT--WSYG-----------------RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 440 (507)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~l~~~--~~~~-----------------~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ 440 (507)
+.. +... .... ...++|++++++++|.|||++||++++|+|++||.
T Consensus 347 --------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~lgl~~~Gsl~~Gk~ 411 (492)
T 2paj_A 347 --------------ISE-VHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLDEVGKVAVGYA 411 (492)
T ss_dssp --------------HHH-HHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTCTTSSCCSTTSB
T ss_pred --------------HHH-HHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHhCCCCccccCCCCc
Confidence 000 1110 1110 23469999999999999999999976899999999
Q ss_pred CcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe---eEEEEEEECCEEEEecCcccCCCCCcc
Q 010547 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 441 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G~~v~~~g~~~~~~~~~~ 503 (507)
|||||+|.+..+.. + . ++|+..+... ..|..||++|++||++|+++..+.++.
T Consensus 412 ADlvvld~~~~~~~----~-----~-~~p~~~i~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~ 467 (492)
T 2paj_A 412 ADIAVYRLDDPRYF----G-----L-HDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKEL 467 (492)
T ss_dssp CCEEEEECCSGGGT----T-----C-SSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCCHHHH
T ss_pred cCEEEEeCCCcccC----C-----c-cCHHHHHHhcCCCCCceEEEECCEEEEECCeeccCCHHHH
Confidence 99999998864321 1 1 4555544321 369999999999999999987765543
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=292.50 Aligned_cols=352 Identities=15% Similarity=0.135 Sum_probs=216.4
Q ss_pred CcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCCh
Q 010547 41 PYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGF 118 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~ 118 (507)
++.+++|+|++|+++++ +..++|+|+||||++|++. . + .+.++||++|++|+|||||+|+|+.......|+.+
T Consensus 4 ~~~~~~i~n~~v~~~~~~~~~~~~v~I~~g~I~~ig~~-~-~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~ 78 (408)
T 3be7_A 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI-N-T---KDATVISIPDLILIPGLMDSHVHIVGNDSKGEESI 78 (408)
T ss_dssp -CCCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECC-C-C---SSSEEEEEEEEEEEECEEEEEECCSSCCCCSGGGT
T ss_pred ccceEEEEeeEEEeCCCCceeeeEEEEECCEEEEEeCC-C-C---CCCeEEECCCCEECcCceeeeEcccCCCCcchhhh
Confidence 35678999999999876 4459999999999999986 2 2 25789999999999999999999982221222111
Q ss_pred -----------hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec-------cccC--C----
Q 010547 119 -----------PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-------GLVP--E---- 174 (507)
Q Consensus 119 -----------~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~---- 174 (507)
....+.++++||||+++++ ++.+ ....+....+...... .++...+ +... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~---~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~g~~~~~~~~~~~ 153 (408)
T 3be7_A 79 ADSSHMGTVWGVVNAEKTLMAGFTTVRNVG-AANY---ADVSVRDAIERGVING-PTMLVSGPALGITGGHCDHNLLPPE 153 (408)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTEEEEEECC-CSTT---HHHHHHHHHHTTSSCC-CEEEECCSCBBCTTSTTSCCCSCTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEEEeCC-Cccc---cCHHHHHHHHCCCCCC-CEEEEccceeeccCCCCcccccccc
Confidence 1156788999999999986 3222 1112222222111000 1221111 0000 0
Q ss_pred -------CcccHHH----HHHHHHcCCcEEEEcccCC-----CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccch
Q 010547 175 -------NAYNASA----LEALLNAGVLGLKSFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 238 (507)
Q Consensus 175 -------~~~~~~~----~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~ 238 (507)
.....++ +++..+.|...++.+.... ...+.+..+++++.++++.|+++|.++.+|+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~--- 230 (408)
T 3be7_A 154 FNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLI--- 230 (408)
T ss_dssp TCCCCTTBCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEEECSHH---
T ss_pred ccccCCcccCCHHHHHHHHHHHHhcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHH---
Confidence 0112233 3444557888888874221 11234567899999999999999999999995421
Q ss_pred hhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEe
Q 010547 239 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~ 318 (507)
.+...++. |. ..+.|+.. ...+.++.+++.|+.+.
T Consensus 231 -----------------------------~i~~~~~~-----------g~-~~i~H~~~--~~~~~i~~~~~~g~~v~-- 265 (408)
T 3be7_A 231 -----------------------------GIKAAIKA-----------GV-DSVEHASF--IDDETIDMAIKNNTVLS-- 265 (408)
T ss_dssp -----------------------------HHHHHHHH-----------TC-SEEEECTT--CCHHHHHHHHHTTCEEE--
T ss_pred -----------------------------HHHHHHHc-----------CC-CEEEECCC--CCHHHHHHHHHCCCEEe--
Confidence 12233222 22 24778776 34567777778887553
Q ss_pred cccccccccccCCCCCCCceeEcCCCCCh------hhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCc
Q 010547 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDA------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 392 (507)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~ 392 (507)
+..... +.+..........|+.+.. .....+.+++++|+++++|||+.+... . .
T Consensus 266 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~~p~-~------~--------- 325 (408)
T 3be7_A 266 --MDIFVS--DYILGEGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDH-G------D--------- 325 (408)
T ss_dssp --CCCSTH--HHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTBCT-T------C---------
T ss_pred --eeecHH--HHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-c------h---------
Confidence 221110 0000000000111111111 123566778889999999999753211 0 0
Q ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccC
Q 010547 393 SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 472 (507)
Q Consensus 393 ~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (507)
+...+....+.++|++++++++|.|||++||++++|+|++||.||||++|.++..++.
T Consensus 326 -----~~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~i~~G~~ADlvvld~~p~~~~~----------------- 383 (408)
T 3be7_A 326 -----NAKQFAYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIR----------------- 383 (408)
T ss_dssp -----GGGHHHHHHHTTCCHHHHHHTTTHHHHHHHTCSSCSSCCTTSBCCEEEESSCTTTCGG-----------------
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcccccCCCCccCEEEECCCchhhHH-----------------
Confidence 0011122344599999999999999999999976899999999999999987432110
Q ss_pred cEEeeEEEEEEECCEEEEecCc
Q 010547 473 RRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 473 ~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
....|..||++|++|+++.-
T Consensus 384 --~~~~v~~v~~~G~~v~~~~~ 403 (408)
T 3be7_A 384 --TLEEVAFVMKEGKVYKREGH 403 (408)
T ss_dssp --GTTSCCEEEETTEEEEECCC
T ss_pred --HhhceeEEEECCEEEecccc
Confidence 00258999999999998753
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=286.62 Aligned_cols=356 Identities=15% Similarity=0.077 Sum_probs=219.6
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC---------
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--------- 112 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~--------- 112 (507)
+.+++|+|++|+|+++. ++|+|+||||++|++..+.+ +.++||++|++|+|||||+|+|+.....
T Consensus 4 ~~~~li~n~~v~~~~~~--~~v~I~~g~I~~vg~~~~~~----~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~ 77 (403)
T 2qt3_A 4 DFDLIIRNAYLSEKDSV--YDIGIVGDRIIKIEAKIEGT----VKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKF 77 (403)
T ss_dssp CEEEEEEEEEETTTTEE--EEEEEETTEEEEEESSCCSC----EEEEEECTTCBEEECEEEEEECGGGTTTTCSSSSCTT
T ss_pred ccceEEEeeEecCCCee--EEEEEECCEEEEeecCCCCC----ccceEcCCCCEecccceeeeeccchhhcccccccccc
Confidence 46789999999987754 89999999999999865432 4579999999999999999999975432
Q ss_pred -CC-C------------------CChh----HHHHHHHhCCceEEEeCCCCCCCCCC--CHHHHHHHHHHHhcCceeeEE
Q 010547 113 -TE-W------------------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKVDAAEKRIYVDVG 166 (507)
Q Consensus 113 -~~-~------------------~~~~----~~~~~~l~~GvTt~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~ 166 (507)
.. + +.+. .....++++||||+.++. ...+... ..+.+.+..+.........+.
T Consensus 78 ~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (403)
T 2qt3_A 78 WSRPYTRDAAIEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHV-DVDSVAKTKAVEAVLEAKEELKDLIDIQVV 156 (403)
T ss_dssp CSSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEE-ECSTTTTTHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCCcccCcCHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCcEEEEEE-cccCccccchHHHHHHHHHHhhcceeEEEE
Confidence 00 0 0011 135678899999997654 2222111 122222333332222222222
Q ss_pred Eecc-ccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhccc
Q 010547 167 FWGG-LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 245 (507)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 245 (507)
.... .....+...+.++++.+.|...++. +.+ ......+++++.++++.|++++.++.+|+.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~p---~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~--------- 223 (403)
T 2qt3_A 157 AFAQSGFFVDLESESLIRKSLDMGCDLVGG-VDP---ATRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGT--------- 223 (403)
T ss_dssp EECTTCTTTSTTHHHHHHHHHHTTCSEEEC-BCT---TTTTSCHHHHHHHHHHHHHHTTCEEEEEECCCHH---------
T ss_pred EcCCcccccCcchHHHHHHHHhcCCCeEEE-ecC---CCCCCChHHHHHHHHHHHHHcCCCeEEEeCCccc---------
Confidence 2110 0111223456667777777644432 211 2223456689999999999999999999954321
Q ss_pred CcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH-----HHHHHHHHHhCCCCEEEecc
Q 010547 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-----SLDLLMEAKTNGDSITVETC 320 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~-----~~~~i~~~~~~g~~i~~~~~ 320 (507)
.....++..++.+.+.+. +.+..+.|+...+. ..+.++.+++.|+.+.. |
T Consensus 224 ------------------~~~~~~~~~~~~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~--~ 278 (403)
T 2qt3_A 224 ------------------VGVYSINRLAQKTIENGY-----KGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVT--C 278 (403)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTC-----TTSEEEEECTHHHHSCHHHHHHHHHHHHHHTCEEEE--E
T ss_pred ------------------chhHHHHHHHHHHHHcCC-----CCCeEEEehhhhccCChhhHHHHHHHHHHcCCEEEE--C
Confidence 011234444555544311 23578899876311 13677777788876554 4
Q ss_pred cccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCC-chhhhHHH
Q 010547 321 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI-SSLQFVLP 399 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 399 (507)
|.. + ....++.+++++|+++++|||+...... +.+. ..++. +.
T Consensus 279 p~~---------------------~--~~~~~~~~~~~~Gv~v~lgtD~~~~~~~------------~~g~~~~~~~-~~ 322 (403)
T 2qt3_A 279 FSS---------------------T--PPTMPVIKLLEAGINLGCASDNIRDFWV------------PFGNGDMVQG-AL 322 (403)
T ss_dssp TTT---------------------C--CTTCCHHHHHHTTCEEEEECCSCSSSSC------------SCCCCCHHHH-HH
T ss_pred CCC---------------------C--CCCCCHHHHHHcCCcEEEeCCCCCCCCC------------CCCCCCHHHH-HH
Confidence 420 0 0112345778889999999997521100 0011 11111 11
Q ss_pred HHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeE
Q 010547 400 VTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 478 (507)
Q Consensus 400 ~~~~~~~-~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
....... ..+++++++++++|.|||+++|+++.|+|++||.||||++|.+++.. .....+.
T Consensus 323 ~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~g~i~~G~~ADlvv~d~~~~~~------------------~~~~~~~ 384 (403)
T 2qt3_A 323 IETQRLELKTNRDLGLIWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQW------------------AIIDQAK 384 (403)
T ss_dssp HHHHHTTCCSHHHHHHHHHHTTHHHHHHHTCGGGCSSSTTSBCCEEEESSSSHHH------------------HHHHCCC
T ss_pred HHHHHhCcCCccCHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCEEEEcCCChHH------------------HhhcCCC
Confidence 1110000 11268899999999999999999556999999999999999774221 1111236
Q ss_pred EEEEEECCEEEEecCccc
Q 010547 479 VLATISRGNLVYKEGNHA 496 (507)
Q Consensus 479 V~~v~v~G~~v~~~g~~~ 496 (507)
|..||++|++||++|+++
T Consensus 385 v~~v~v~G~~v~~~g~~~ 402 (403)
T 2qt3_A 385 RLCVIKNGRIIVKDEVIV 402 (403)
T ss_dssp EEEEEETTEEEEESSSBC
T ss_pred ccEEEECCEEEecCCccc
Confidence 999999999999999886
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=280.21 Aligned_cols=358 Identities=14% Similarity=0.124 Sum_probs=226.9
Q ss_pred ceEEEEecEE-ECCCC----ceeeeEEEeCCEEEEeecCCCCCCCCCC-CcEEecCCCEEecceeecccccCCCCCCCCC
Q 010547 43 NQYWLTSKRI-VTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKT-GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116 (507)
Q Consensus 43 ~~~~i~n~~i-~~~~~----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~-~~viD~~g~~v~PGfID~H~H~~~~~~~~~~ 116 (507)
.+++|+|++| +++++ ..+++|+|+||||++|++....+. .+ .++||++|++|+|||||+|+|+....+....
T Consensus 2 ~~~li~n~~v~~~~~~~~~~~~~~~v~I~~g~I~~Ig~~~~~~~--~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~ 79 (386)
T 2vun_A 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKD--AGDATIIDAAGSTVTPGLLDTHVHVSGGDYAPRQ 79 (386)
T ss_dssp CEEEEESCSEEECSCTTSCEECCSEEEEETTEEEEEESGGGGTT--CTTCEEEECTTCEEEECEEEEEECCCSTTEEGGG
T ss_pred ccEEEeccEEEEcCCCCccccccceEEEECCEEEEecCccccCC--CCCceEEcCCCCEEccceeeccccccCCCcChhH
Confidence 5789999999 99875 347899999999999997422111 24 6899999999999999999999753221100
Q ss_pred ChhHHHHHHHhCCceEEEeCCC---CCCCCCCCHHHHH--HHHHHHh--cC--ceeeEEEeccc--cCCCcccHHHHHHH
Q 010547 117 GFPSGTKAAAAGGITTLIDMPL---NSDPSTISTETLK--LKVDAAE--KR--IYVDVGFWGGL--VPENAYNASALEAL 185 (507)
Q Consensus 117 ~~~~~~~~~l~~GvTt~~~~~~---~~~p~~~~~~~~~--~~~~~~~--~~--~~~~~~~~~~~--~~~~~~~~~~~~~~ 185 (507)
......+.++++||||+++++. .+.+ ...+.+. ....... .. ....+ ..+. .... ...++++++
T Consensus 80 ~~~~~~~~~l~~GvTtv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~-~~~~~~~~~ 154 (386)
T 2vun_A 80 KTMDFISSALHGGVTTMISAGSPHFPGRP--KDAAGTKALAITLSKSYYNARPAGVKV--HGGAVILEKG-LTEEDFIEM 154 (386)
T ss_dssp TEESHHHHHHTTTEEEEEECCCTTSTTCC--CSHHHHHHHHHHHHHHHHHCCGGGCEE--ECCEECCCTT-CCHHHHHHH
T ss_pred HHHHHHHHHHhCCceEEEeccccccCCCh--hhHHHHHHHHHHhhcccccccccceee--ccCcccccCC-cCHHHHHHH
Confidence 1123688999999999999751 0222 2232232 2211111 00 00111 1111 1111 224677888
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHH
Q 010547 186 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (507)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (507)
.+.|...++.+... +..+++.+.++++.|+++++++.+|+++..... . ..+
T Consensus 155 ~~~g~~~ik~~~~~------~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~---------~-----------~~~--- 205 (386)
T 2vun_A 155 KKEGVWIVGEVGLG------TIKNPEDAAPMVEWAHKHGFKVQMHTGGTSIPG---------S-----------STV--- 205 (386)
T ss_dssp HHTTCCEEEEETSS------SCCSHHHHHHHHHHHHHTTCEEEEECSCCSCST---------T-----------CSC---
T ss_pred HHhCCCeEEEeecC------CCCCHHHHHHHHHHHHHCCCeEEEecCCccccc---------c-----------CHH---
Confidence 88888888886421 236889999999999999999999996432100 0 000
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEEEEecCChh--HHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCC
Q 010547 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 343 (507)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~--~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 343 (507)
.+...++ . |.. .+.|+.... ...+.++.+++.|+.+.. +++ + +
T Consensus 206 --~i~~~~~----~-------G~~-~i~H~~~~~~~~~~~~~~~~~~~g~~vl~--~~~------~-----g-------- 250 (386)
T 2vun_A 206 --TADDVIK----T-------KPD-VVSHINGGPTAISVQEVDRIMDETDFAME--IVQ------C-----G-------- 250 (386)
T ss_dssp --CHHHHHH----H-------CCS-EEETTTCSSSCCCHHHHHHHHHHCCCEEE--EES------S-----S--------
T ss_pred --HHHHHHH----c-------CCC-EEEEccCCCCCCCHHHHHHHHHcCCeEEE--ecc------C-----C--------
Confidence 1122222 2 333 478876510 234567777777876511 111 0 0
Q ss_pred CCChhhHHHHHHHHhcCC--eeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhh
Q 010547 344 IRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 421 (507)
Q Consensus 344 ~~~~~~~~~~~~~l~~G~--~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~ 421 (507)
........+++++++|+ +++++||+..... ..+.+ . +...+..+.+.++|++++++++|.
T Consensus 251 -~~~~~~~~~~~~~~~g~~d~v~lgTD~p~~~~-----------~~~~g--~----~~~~~~~~~~~~ls~~~~~~~~T~ 312 (386)
T 2vun_A 251 -NPKIADYVARRAAEKGQLGRVIFGNDAPSGTG-----------LIPLG--I----LRNMCQIASMSDIDPEVAVCMATG 312 (386)
T ss_dssp -CHHHHHHHHHHHHHHTCGGGEEEECCBSBTTB-----------BCTTH--H----HHHHHHHHHHSCCCHHHHHHHHTH
T ss_pred -cccccHHHHHHHHHcCCCceeEEecCCCCCCC-----------CCcch--h----HHHHHHHHhhcCCCHHHHHHHHhH
Confidence 02345567888999999 8999999831100 00000 0 222233445679999999999999
Q ss_pred chhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE--eeEEEEEEECCEEEEecCcccCCC
Q 010547 422 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISRGNLVYKEGNHAPAA 499 (507)
Q Consensus 422 n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~V~~v~v~G~~v~~~g~~~~~~ 499 (507)
|||++||+ ++|+|++||.||||++|.+..+ + . .+++..+.. ...|..||++|++||++|+... .
T Consensus 313 n~A~~lgl-~~G~i~~G~~ADlvv~d~~~~~--~-~---------~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~~~~-~ 378 (386)
T 2vun_A 313 NSTAVYGL-NTGVIAPGKEADLIIMDTPLGS--V-A---------EDAMGAIAAGDIPGISVVLIDGEAVVTKSRNTP-P 378 (386)
T ss_dssp HHHHHHTC-SCSSCSTTSBCCEEEEECBTTC--S-C---------SSHHHHHHHTCCCEEEEEEETTEEEESSCSSSC-C
T ss_pred HHHHHcCC-CceeeCCCCeeCEEEECCCccc--c-c---------chhHHHhhccCCCceeEEEECCEEEeecCcCCC-C
Confidence 99999999 7899999999999999987521 1 0 222222211 2379999999999999998876 5
Q ss_pred CCcc
Q 010547 500 CGSP 503 (507)
Q Consensus 500 ~~~~ 503 (507)
+|+.
T Consensus 379 ~~~~ 382 (386)
T 2vun_A 379 AKRA 382 (386)
T ss_dssp BSSC
T ss_pred CCcc
Confidence 5554
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=281.61 Aligned_cols=332 Identities=16% Similarity=0.184 Sum_probs=259.0
Q ss_pred CCCEEecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCce--eeEEEec
Q 010547 92 GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWG 169 (507)
Q Consensus 92 ~g~~v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 169 (507)
++++|+||+||+|+|+.. +.. ....+.++++||||+++++ ++.|.....+.+....+.+..... .++..++
T Consensus 4 ~~~~v~PG~ID~HvH~~~-g~~-----~~e~~aa~~gGvTtvv~mp-nt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (347)
T 2z26_A 4 SQVLKIRRPDDWHLHLRD-GDM-----LKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLM 76 (347)
T ss_dssp CCEEEEECCCEEEECCCS-HHH-----HHHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEEE
T ss_pred CCeEECCCcceeeecCCC-CCc-----hhhHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHhcccCCcccEEEEE
Confidence 467999999999999987 322 2345788999999999999 888998888888888777765433 4455545
Q ss_pred cccCCCcccHHHHHHHHHcCC-cEEEEcccCCCC-CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCc
Q 010547 170 GLVPENAYNASALEALLNAGV-LGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 247 (507)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~ 247 (507)
++........+++..+.+.|+ .++|.|+.+.+. ++.+..+.+.+.++++.+++.+.++.+|+++.... +
T Consensus 77 ~~~~~~~~~~~ei~~l~~~G~~~g~K~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~---~------ 147 (347)
T 2z26_A 77 TCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHAD---I------ 147 (347)
T ss_dssp EEECCTTCCHHHHHHHHHTTSEEEEEECCCCTTCCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCTT---S------
T ss_pred EEEeCCCCCHHHHHHHHHCCCeEEEEEeecCCcCCCCCccCCHHHHHHHHHHHHHhCCEEEEEecCCccc---c------
Confidence 542222234678888888998 899999876532 23455688999999999999999999999865410 0
Q ss_pred CCccccccccCCCChhHHHHHHHHHH--HHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccc
Q 010547 248 LDTRSYSTYLKTRPPSWEEAAIRELL--TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325 (507)
Q Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~--~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~ 325 (507)
.+...|..++.+.+ .+.+. .+.++|+.|++++ ..++.++.++ .++++++||||+.
T Consensus 148 ------------~~~~~E~~~~~~~i~~~la~~-------~~~~~hi~Hvst~-~~~~~i~~ak---~~Vt~e~~ph~L~ 204 (347)
T 2z26_A 148 ------------DIFDREARFIESVMEPLRQRL-------TALKVVFEHITTK-DAADYVRDGN---ERLAATITPQHLM 204 (347)
T ss_dssp ------------CGGGHHHHHHHHTHHHHHHHS-------TTCCEEECSCCSH-HHHHHHHTSC---TTEEEEECHHHHH
T ss_pred ------------CHHHHHHHHHHHHHHHHHHhh-------cCCcEEEEECCcH-HHHHHHHHhC---CCceEeecchHhe
Confidence 01113555566665 35553 4889999999998 8888888764 5799999999999
Q ss_pred ccccCCC--CCCCceeEcCCCCChhhHHHHHHHHhcCCee-EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH
Q 010547 326 FSAEEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402 (507)
Q Consensus 326 ~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~-~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (507)
++.+++. ..++.++++||+|...+++.+++++.+|.++ +++||++|+....+.. ++. ..|+.+++..++.++
T Consensus 205 l~~~~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~---~~g--~~Gi~~~e~~l~l~~ 279 (347)
T 2z26_A 205 FNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKES---SCG--CAGCFNAPTALGSYA 279 (347)
T ss_dssp CCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSS---SSB--CCCCCCTTTHHHHHH
T ss_pred ecHHHhcCcCCCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcC---CCC--CCCcCcHHHHHHHHH
Confidence 9988874 3788899999999999999999999999999 8999999998776542 222 367778899898888
Q ss_pred HHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccc-cCcEEeeEEE
Q 010547 403 SYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 480 (507)
Q Consensus 403 ~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~ 480 (507)
... +.++|++++++++|.|||++||+ +++|+| +|+ +..|.++.. .+.++.. ++|| .|..+.|.|.
T Consensus 280 ~~~-~~~~sl~~~v~~~s~nPAki~gl~~~kG~i--------~l~--~~~~~v~~~-~~~s~~~-~sPf~~G~~l~g~v~ 346 (347)
T 2z26_A 280 TVF-EEMNALQHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAES-IALTDDT-LVPFLAGETVRWSVK 346 (347)
T ss_dssp HHH-HHTTCGGGHHHHHHTHHHHHHTCCCCCCEE--------EEE--CCCEECCSC-EECSSSE-ECCTTTTCEESCEEC
T ss_pred HHh-hcCCCHHHHHHHHhHhHHHHhCCCCCCCeE--------EEE--cceEEEchh-hccccCC-cccccCCcEEEeEEe
Confidence 744 56789999999999999999999 457875 677 566888777 7888888 9999 7999988875
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=291.97 Aligned_cols=362 Identities=17% Similarity=0.134 Sum_probs=215.1
Q ss_pred CcceEEEEecEEECCCC--c-eeeeEEE-eCCEEEEeec--CCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC-
Q 010547 41 PYNQYWLTSKRIVTPKG--V-ISGAVEI-KEGNIISIVS--EEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT- 113 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~--~-~~~~I~I-~dG~I~~Vg~--~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~- 113 (507)
+..+++|+|++|+++++ + .+++|+| +||||++|++ ....+ .+.++||++|++|+|||||+|+|+..+...
T Consensus 11 ~~~~~li~n~~i~~~~~~~~~~~~~v~I~~~g~I~~Vg~~~~~~~~---~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~ 87 (458)
T 2p9b_A 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIP---AEYHYLDGTGKIVMPGLINAHTHLFSQGKPL 87 (458)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCC---TTCEEEECTTCEEEECEEEEEECSCC-----
T ss_pred CCCcEEEEeeEEEeCCCCccccCcEEEEecCCEEEEEeccccCCCC---CCCeEEECCCCEEccceeeeeeccccccccc
Confidence 45688999999999875 3 3689999 9999999997 33222 257899999999999999999999765422
Q ss_pred C---------------CC----------ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe
Q 010547 114 E---------------WE----------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168 (507)
Q Consensus 114 ~---------------~~----------~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (507)
. +. .+....+.++++||||+++++ +..+ ....+....+..... ..++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~---~~~~~~~~~~~g~~~-g~r~~~~ 162 (458)
T 2p9b_A 88 NPKLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLG-DVGY---EVVTLRDQIDAGQIL-GPRILAS 162 (458)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTEEEEEESC-CSSS---HHHHHHHHHHTTSSC-CCEEECC
T ss_pred cccccchhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHcCCcEEEeCC-CCcc---ccHHHHHHHHcCCCC-CCeEEec
Confidence 0 11 133456788999999999985 2211 112222222111100 0122211
Q ss_pred cc------ccC--------CC-cccHHHHHHHHHcCCcEEEEcccCC--C-----CCCCCCCCHHHHHHHHHHHHhcCCc
Q 010547 169 GG------LVP--------EN-AYNASALEALLNAGVLGLKSFMCPS--G-----INDFPMTNASHIKEGLSVLARYKRP 226 (507)
Q Consensus 169 ~~------~~~--------~~-~~~~~~~~~~~~~g~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~~~~a~~~~~~ 226 (507)
+. ... .. ....+.+++..+.|...+|.+.... . ..+.+..+++.+.++++.|+++|++
T Consensus 163 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 242 (458)
T 2p9b_A 163 GPLMAIPEGHGAPLIALTSGTPEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVI 242 (458)
T ss_dssp CSCEECCCSSCCCCEECCSCCHHHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCC
T ss_pred ccccccCCCCCccccCccCCCHHHHHHHHHHHHHcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHHHHHHHHHHCCCe
Confidence 11 100 01 1112345555667888888875311 0 1134567899999999999999999
Q ss_pred EEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHH
Q 010547 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 306 (507)
Q Consensus 227 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~ 306 (507)
+.+|+++.. .+...++. |. ..+.|+... ..+.++
T Consensus 243 v~~H~~~~~--------------------------------~i~~~~~~-----------G~-~~i~H~~~~--~~~~~~ 276 (458)
T 2p9b_A 243 VGAHAQSPE--------------------------------GVRRSLLA-----------GV-DTIEHGSVL--DDELIG 276 (458)
T ss_dssp EEEEECSHH--------------------------------HHHHHHHH-----------TC-SEEEECCCC--CHHHHH
T ss_pred EEEEeCCHH--------------------------------HHHHHHHc-----------CC-CEEEECCCC--CHHHHH
Confidence 999995422 12222222 22 235666652 234677
Q ss_pred HHH------hCCCCEEEeccccc--ccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCC-CChhhh
Q 010547 307 EAK------TNGDSITVETCPHY--LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELK 377 (507)
Q Consensus 307 ~~~------~~g~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~-~~~~~~ 377 (507)
.++ +.|+.+.....+.. ...... ...........++.+.......+.+++++|+++++|||+.+ +...
T Consensus 277 ~~~~~~~~~~~g~~v~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~~~~~~-- 353 (458)
T 2p9b_A 277 MFRHNPNALRGYSALIPTLSAGLPLTLLGQD-VTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQ-- 353 (458)
T ss_dssp HHHCCTTSTTSCCEEECCHHHHHHHHHSCHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTSTTSCT--
T ss_pred HHhcccccccCCeEEEeecchhhHHHhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEecCCCCCCCcc--
Confidence 777 77865421111110 001100 00000000000001112334567888999999999999642 1110
Q ss_pred ccccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeC
Q 010547 378 LLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELD 455 (507)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~ 455 (507)
+. +...+....+ .++|++++++++|.|||+++|+ +++|+|++||.|||||+|.++..++
T Consensus 354 ------------~~------~~~e~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~Gk~ADlvvld~~p~~~~- 414 (458)
T 2p9b_A 354 ------------YA------TWRELELLVAYAGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPLDDL- 414 (458)
T ss_dssp ------------TC------HHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCG-
T ss_pred ------------cc------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCCccCCCCcCCEEEECCCchhCH-
Confidence 00 1111223334 5899999999999999999999 5689999999999999998742210
Q ss_pred CCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec--Cccc
Q 010547 456 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE--GNHA 496 (507)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~--g~~~ 496 (507)
.....|..||++|++||++ +++.
T Consensus 415 ------------------~~~~~v~~v~v~G~~v~~~~~~~~~ 439 (458)
T 2p9b_A 415 ------------------RALEHPALVIAAGHPVWRPGPKRFA 439 (458)
T ss_dssp ------------------GGGTSCSEEEETTEECCSCCCCCCH
T ss_pred ------------------HHhccceEEEECCEEEecCchhhhh
Confidence 0002689999999999987 6654
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=287.13 Aligned_cols=364 Identities=17% Similarity=0.214 Sum_probs=217.9
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC------
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW------ 115 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~------ 115 (507)
+++++|+|++|+|++ .+++|+|+||||++||+..+.+ +.+.++||++|++|+|||||+|+|+........
T Consensus 7 ~~~~li~n~~v~~~~--~~~~v~I~~g~I~~vg~~~~~~--~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~~~~~~~ 82 (430)
T 1ra0_A 7 NALQTIINARLPGEE--GLWQIHLQDGKISAIDAQSGVM--PITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQS 82 (430)
T ss_dssp -CCCEEEEEBCTTCC--SEEEEEEETTEEEEEEEESSCC--CCCTTEEECTTCEEESCEEEEEECTTTTTCTTSSSCCSS
T ss_pred CCcEEEEeeEecCCC--ceeEEEEECCEEEEeecCCCCC--CCCcceEccCCCEecccccccccchhhhhhcCCCcCCCC
Confidence 356899999999987 6889999999999999865432 126789999999999999999999965321110
Q ss_pred -------------------CChh----HHHHHHHhCCceEEEeCCCCC-CCCCCCHHHHHHHHHHHhc-CceeeEEEec-
Q 010547 116 -------------------EGFP----SGTKAAAAGGITTLIDMPLNS-DPSTISTETLKLKVDAAEK-RIYVDVGFWG- 169 (507)
Q Consensus 116 -------------------~~~~----~~~~~~l~~GvTt~~~~~~~~-~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 169 (507)
+.+. .....++++||||+.+++ +. .|. ...+....+.... +..+.+....
T Consensus 83 ~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (430)
T 1ra0_A 83 GTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHV-DVSDAT---LTALKAMLEVKQEVAPWIDLQIVAF 158 (430)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEE-ECCSTT---CHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeecc-ccCChH---HHHHHHHHHHHHhhhhhEEEEEEec
Confidence 1111 223556899999999875 22 222 1122222222111 2233332211
Q ss_pred cc--cCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCC---CCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhc
Q 010547 170 GL--VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM---TNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKL 243 (507)
Q Consensus 170 ~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~ 243 (507)
.. ....+...+.++++.+.|...+.. . . . .+. .+++.++++++.|+++|.++.+|+.+... ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~---~-~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~---- 228 (430)
T 1ra0_A 159 PQEGILSYPNGEALLEEALRLGADVVGA-I-P---H-FEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSR---- 228 (430)
T ss_dssp CTTCSSSSTTHHHHHHHHHHTTCSEECC-C-G---G-GSSSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTCC----
T ss_pred CCcccccCchHHHHHHHHHHhCCCeEee-e-e---c-ccccccccHHHHHHHHHHHHHcCCCEEEEECCCCchhHH----
Confidence 00 001223345567777766433321 1 1 1 122 57889999999999999999999954321 000
Q ss_pred ccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH-----HHHHHHHHHhCCCCEEEe
Q 010547 244 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-----SLDLLMEAKTNGDSITVE 318 (507)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~-----~~~~i~~~~~~g~~i~~~ 318 (507)
.+....+...+.+ . +.+.++.|+...+. ..+.++.+++.|+.+.
T Consensus 229 ------------------------~~~~~~~~~~~~g----~-~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~gv~v~-- 277 (430)
T 1ra0_A 229 ------------------------FVETVAALAHHEG----M-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFV-- 277 (430)
T ss_dssp ------------------------HHHHHHHHHHHHT----C-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEE--
T ss_pred ------------------------HHHHHHHHHHHhC----C-CCCEEEEeccccccCChHhHHHHHHHHHHcCCEEE--
Confidence 0112222333221 0 44577888765311 2257777878886544
Q ss_pred ccccc-ccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhH
Q 010547 319 TCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 397 (507)
Q Consensus 319 ~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (507)
+||+. ..+.. .. . ..|+.+.. ..+.+++++|+++++|||+.+..... ......++.
T Consensus 278 ~~p~~~~~~~~-~~---~----~~p~~~~~---~~~~~~~~~Gv~~~lgTD~~~~~~~~-----------~~~~~~~~~- 334 (430)
T 1ra0_A 278 ANPLVNIHLQG-RF---D----TYPKRRGI---TRVKEMLESGINVCFGHDGVFDPWYP-----------LGTANMLQV- 334 (430)
T ss_dssp ECHHHHHHHTT-TT---C----CSSCCCCC---CCHHHHHHTTCCEEECCBCSSBTTBS-----------CCCCCHHHH-
T ss_pred ECchhhhhhcc-cc---C----CCCCcCCC---CCHHHHHHCCCEEEEeCCCCcccCCC-----------CCCCCHHHH-
Confidence 46642 22211 00 0 12333222 23567788999999999986411000 000111111
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe
Q 010547 398 LPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 476 (507)
Q Consensus 398 l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
+........ ..++|++++++++|.|||+++|+++ |+|++||.||||++|.+.++.. + ...
T Consensus 335 ~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~-G~i~~G~~ADlvv~d~~~~~~~-----~-------------~~~ 395 (430)
T 1ra0_A 335 LHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQD-YGIAAGNSANLIILPAENGFDA-----L-------------RRQ 395 (430)
T ss_dssp HHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCSS-CSSCTTSBCCEEEESSSSHHHH-----H-------------HHT
T ss_pred HHHHHHHHccCCcccHHHHHHHHHHHHHHHhCCCC-cccCCCCcCCEEEEcCCChhHH-----H-------------hcc
Confidence 111111100 0135899999999999999999966 9999999999999998754310 0 012
Q ss_pred eEEEEEEECCEEEEecCccc
Q 010547 477 GKVLATISRGNLVYKEGNHA 496 (507)
Q Consensus 477 ~~V~~v~v~G~~v~~~g~~~ 496 (507)
+.|..||++|++||++|+++
T Consensus 396 ~~v~~v~~~G~~v~~~~~~~ 415 (430)
T 1ra0_A 396 VPVRYSVRGGKVIASTQPAQ 415 (430)
T ss_dssp CCCSEEEETTEEEEECCCCC
T ss_pred CcceEEEECCEEEecCCcce
Confidence 36899999999999999887
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=291.80 Aligned_cols=357 Identities=22% Similarity=0.265 Sum_probs=229.3
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC-------C--CCCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP-------R--NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~-------~--~~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
..+++|+|++|+|++++.+++|+|+||||++|++...+. . ...+.++||++|++|+|||||+|+|+..+.
T Consensus 65 ~~dllI~n~~Vid~~gi~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl~~p~- 143 (569)
T 1e9y_B 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQ- 143 (569)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEETTCTT-
T ss_pred cCCEEEEeeEEECCCCcEeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecCCCcH-
Confidence 568999999999987777899999999999999864321 0 123578999999999999999999987532
Q ss_pred CCCCChhHHHHHHHhCCceEEEeCCCCCCCC------CCC--HHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHH
Q 010547 113 TEWEGFPSGTKAAAAGGITTLIDMPLNSDPS------TIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 184 (507)
Q Consensus 113 ~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (507)
..+.++++||||+++++ +.|. ... ...+....+.... ..+++.+++... ....+.+.+
T Consensus 144 --------~~~~al~~GvTTv~d~g--~~p~~~t~~~~~~~g~~~l~~~~~a~~~-~~~~~~~~g~g~---~~~~~~l~e 209 (569)
T 1e9y_B 144 --------QIPTAFASGVTTMIGGG--TGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGFLAKGN---ASNDASLAD 209 (569)
T ss_dssp --------HHHHHHHTTEEEEEEEC--CSSCHHHHHCCCCCHHHHHHHHHHHHTT-SSSEEEEEEECC---CSCHHHHHH
T ss_pred --------HHHHHHhCCeeEEEcCC--cCCCCCCcCcccCCcHHHHHHHHHHhcc-cCceEEEECCCC---cCCHHHHHH
Confidence 26789999999999974 2221 111 3345555554443 345665544321 234567888
Q ss_pred HHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhH
Q 010547 185 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264 (507)
Q Consensus 185 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 264 (507)
+.+.|+.+++.+.. +..+++++.++++.|++++.++.+|++..... +
T Consensus 210 ~~~~Ga~gik~~~~-------~~~t~e~l~~~l~~A~~~g~~V~iHa~~~~e~-----------g--------------- 256 (569)
T 1e9y_B 210 QIEAGAIGFKIHED-------WGTTPSAINHALDVADKYDVQVAIHTDTLNEA-----------G--------------- 256 (569)
T ss_dssp HHHTTCSEEEECGG-------GCCCHHHHHHHHHHHHHTTCEEEECCCTTCSS-----------C---------------
T ss_pred HHHcCCCEEEecCC-------CCCCHHHHHHHHHHHHHhCCEEEEEcCCcccc-----------h---------------
Confidence 88899999998642 24789999999999999999999999642210 0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHH---HHHHHHHHhCCCCEEEecccccccccccCCCCC-CC---c
Q 010547 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-DT---R 337 (507)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~---~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~-~~---~ 337 (507)
.+...+. ... |.++|+.|++.. .. .+.++.+++.|+.. ...++++.++.+..... +. .
T Consensus 257 ---~~~~~la--~~~-------g~~~hi~H~~~~-~~~~~~d~I~~~~~~gv~~--~~~~ptl~~t~~~~~~~~d~~~v~ 321 (569)
T 1e9y_B 257 ---CVEDTMA--AIA-------GRTMHTFHTEGA-GGGHAPDIIKVAGEHNILP--ASTNPTIPFTVNTEAEHMDMLMVC 321 (569)
T ss_dssp ---CHHHHHH--HHT-------TCCEEETTTTST-TSCSTTTGGGGGGSTTEEE--EECGGGCSCBTTHHHHHHHHHHHT
T ss_pred ---HHHHHHH--HHc-------CCCEEEEEcccC-cccccHHHHHHHHHcCCee--EeeCCccccccchhhhhhchhhhh
Confidence 0011111 111 677999999875 32 56777777777522 22233333322211000 00 0
Q ss_pred eeEcCCC---------CChhhHHHHHHHHh-cCCeeEEeCCCCCCChhh-hccccCCccccCCCCchhhhHHHHHH----
Q 010547 338 FKCAPPI---------RDAANKEKLWEALM-DGHIDMLSSDHSPTVPEL-KLLDEGNFLKAWGGISSLQFVLPVTW---- 402 (507)
Q Consensus 338 ~~~~p~~---------~~~~~~~~~~~~l~-~G~~~~lgtD~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~---- 402 (507)
....+++ +.......+++.+. .|+++++|||+.+..... ...+ .+ . ....+....
T Consensus 322 h~l~~~~~ed~~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~~---~~------~-~~~~~~~~~G~l~ 391 (569)
T 1e9y_B 322 HHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITR---TW------Q-TADKNKKEFGRLK 391 (569)
T ss_dssp TTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHHH---HH------H-HHHHHHHHHCSCS
T ss_pred hhcCcccHHHHHHhhcchhhhHHHHHHHHHhCCCEEEEeCCCCccCcccccccc---hh------h-HHHHhHhhccCcc
Confidence 0011111 01123455566666 699999999998654210 0000 00 0 000000000
Q ss_pred -HHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEE
Q 010547 403 -SYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 480 (507)
Q Consensus 403 -~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 480 (507)
....+.+++++++++++|.|||+++|+ +++|+|++||.||||+||++.. . .++.
T Consensus 392 ~~~~~~~~ls~~~al~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~------------~------------~~v~ 447 (569)
T 1e9y_B 392 EEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF------------G------------VKPN 447 (569)
T ss_dssp SCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTT------------T------------TCCS
T ss_pred hhhccccCCCHHHHHHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchhc------------C------------CCcc
Confidence 001234588999999999999999999 5689999999999999997631 1 1578
Q ss_pred EEEECCEEEEec-Ccc
Q 010547 481 ATISRGNLVYKE-GNH 495 (507)
Q Consensus 481 ~v~v~G~~v~~~-g~~ 495 (507)
.||++|++||.+ |..
T Consensus 448 ~v~~~G~iv~~~~g~~ 463 (569)
T 1e9y_B 448 MIIKGGFIALSQMGDA 463 (569)
T ss_dssp EEEETTEEEEEEECCT
T ss_pred EEEECCEEEEcCCCCc
Confidence 999999999976 553
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=274.23 Aligned_cols=362 Identities=21% Similarity=0.254 Sum_probs=218.5
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC---CCCh
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---WEGF 118 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~---~~~~ 118 (507)
+..++|+|++|++++...+++|+|+||||++|++....+ ...+.++||++|++|+|||||+|+|+...+... ..+.
T Consensus 7 ~~~~~i~n~~v~~~~~~~~~~v~i~~g~I~~ig~~~~~~-~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~ 85 (390)
T 1onw_A 7 AGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSD-IVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTP 85 (390)
T ss_dssp GCCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTT-SSSSCEEEECTTCEEEECEEEEEECTTCCBCTTSGGGBCC
T ss_pred cceEEEECcEEECCCCCccceEEEECCEEEEEecCcccC-CCCCCeEEeCCCCEECcCeeEeeECccccCccccccccCH
Confidence 346899999999988766889999999999999764321 112568999999999999999999985432110 1112
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC-C--cccHHHHHHHHHcCCcEEEE
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N--AYNASALEALLNAGVLGLKS 195 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~g~~~~~~ 195 (507)
....+.++++||||+++++ ++.+.....+.+....+.+...+...+...+++... . ......-.... ....+++.
T Consensus 86 ~~~~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 163 (390)
T 1onw_A 86 EVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAII-DRVIGVKC 163 (390)
T ss_dssp CCCHHHHHHTTEEEEEECC-CSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSCCCSSSCHHHHHHHC-TTEEEEEE
T ss_pred HHHHHHHHHCCeeEEecCC-CcccccCcHHHHHHHHHHHHhcCCceEEeccccCCCchhhhhhhcchhhhH-HHhhccee
Confidence 2346788999999999987 555555555555554444433222223322222111 1 11111111111 11223333
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHhcCC------cEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHH
Q 010547 196 FMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 269 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~------~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 269 (507)
.+.+ ...+..+.+++.++.+.++..+. .+.+|...... .+
T Consensus 164 ~~~~---~~~~~~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~-------------------------------~~ 209 (390)
T 1onw_A 164 AISD---HRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKK-------------------------------AL 209 (390)
T ss_dssp EESS---TTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTT-------------------------------TT
T ss_pred eecC---CCCCCCCHHHHHHHHHHHhhhhhhhccCceEEEEeCCCHH-------------------------------HH
Confidence 3322 22345788899888887765432 35667621110 11
Q ss_pred HHHHHHHHhhccCCCCCCce---EEEEecCChhHHH-HHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCC
Q 010547 270 RELLTVAKDTRTDGPAEGAH---LHIVHLSDASSSL-DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 345 (507)
Q Consensus 270 ~~~~~l~~~~~~~~~~~g~~---~~~~h~~~~~~~~-~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 345 (507)
+...++.+.. +.+ .+..|+...+... +.++.+++.+. .... ++ .+|+
T Consensus 210 ~~~~~~~~~g-------~~~v~~l~~~h~~~~~~~~~~~~~~~~~~~~-~~~~-~~------------------~~~~-- 260 (390)
T 1onw_A 210 QPIYDLLENC-------DVPISKLLPTHVNRNVPLFEQALEFARKGGT-IDIT-SS------------------IDEP-- 260 (390)
T ss_dssp HHHHHHHHTC-------CCCGGGEEEECGGGSHHHHHHHHHHHHTTCC-EEEE-TT------------------CCSS--
T ss_pred HHHHHHHhcc-------CCceEEeeccccccCHHHHHHHHHHHhcCCc-cccc-cc------------------cCCC--
Confidence 2333333321 222 2335654331222 34444444332 1111 11 1122
Q ss_pred ChhhHHHHHHHHhcCCe---eEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 010547 346 DAANKEKLWEALMDGHI---DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 422 (507)
Q Consensus 346 ~~~~~~~~~~~l~~G~~---~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n 422 (507)
......++++++.|+. ++++||+.+...... ..+.. ...++.+....+..+...+...+++++++++++|.|
T Consensus 261 -~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~~~~~--~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~n 335 (390)
T 1onw_A 261 -VAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFD--DEGNL--THIGVAGFETLLETVQVLVKDYDFSISDALRPLTSS 335 (390)
T ss_dssp -SCHHHHHHHHHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHHHHHHHHCCCHHHHHGGGTHH
T ss_pred -CcCHHHHHHHHHcCCCccceEEEccCCCCCcccC--Ccccc--ccccCCCHHHHHHHHHHHHHHcCCCHHHHHHHHhHH
Confidence 2456778899999973 699999875422110 01111 223555566666665555557799999999999999
Q ss_pred hhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCc
Q 010547 423 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGS 502 (507)
Q Consensus 423 ~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~ 502 (507)
||++||++++|+|++|++|||+++|.+ + .|..||++|++||++|+++.. |+
T Consensus 336 pA~~~gl~~~G~i~~G~~ADlvv~d~~--~-------------------------~v~~v~~~G~~v~~~g~~~~~--g~ 386 (390)
T 1onw_A 336 VAGFLNLTGKGEILPGNDADLLVMTPE--L-------------------------RIEQVYARGKLMVKDGKACVK--GT 386 (390)
T ss_dssp HHHHTTCTTCSSCCTTSBCCEEEECTT--C-------------------------CEEEEEETTEEEEETTEESSC--CT
T ss_pred HHHHhCCCCCcccCCCCcCCEEEEcCC--C-------------------------cEEEEEECCEEEEECCeEccc--cc
Confidence 999999966899999999999999965 1 478999999999999999864 77
Q ss_pred c
Q 010547 503 P 503 (507)
Q Consensus 503 ~ 503 (507)
|
T Consensus 387 ~ 387 (390)
T 1onw_A 387 F 387 (390)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=290.16 Aligned_cols=352 Identities=21% Similarity=0.241 Sum_probs=223.8
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC---------CCCCCCcEEecCCCEEecceeecccccCCCC
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP---------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~---------~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 111 (507)
...+++|+|++|+|++++..++|+|+||||++|++..... ....+.++||++|++|+|||||+|+|+..++
T Consensus 65 ~~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~Pg 144 (570)
T 4ac7_C 65 NVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPD 144 (570)
T ss_dssp TBCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCTT
T ss_pred CCCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEecccccCCcc
Confidence 3678999999999988888999999999999999864321 0113678999999999999999999987643
Q ss_pred CCCCCChhHHHHHHHhCCceEEEeCCC------CCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHH
Q 010547 112 RTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (507)
Q Consensus 112 ~~~~~~~~~~~~~~l~~GvTt~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (507)
. .+.++++||||+++.+. ++.|.......+....+.++ ...+++.+++.... ...+++.++
T Consensus 145 ~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~-~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ac7_C 145 Q---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp H---------HHHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHT-TCSSEEEEEEECCC---SSHHHHHHH
T ss_pred h---------HHHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhh-hCCeeEEEEeccCC---cCHHHHHHH
Confidence 2 36789999999996421 11222333455555555544 45688888775432 346788888
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHH
Q 010547 186 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (507)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (507)
.+.|+.+++.+..+ ..+++.+.++++.|++++.++.+|+++....
T Consensus 212 ~~aGa~gfK~~~~~-------~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~---------------------------- 256 (570)
T 4ac7_C 212 IDAGAAGLKIHEDW-------GATPASIDRSLTVADEADVQVAIHSDTLNEA---------------------------- 256 (570)
T ss_dssp HHHTCCEEEEEGGG-------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSS----------------------------
T ss_pred HHcCCCeEeeccCC-------CCCHHHHHHHHHHHHHcCCEEEEEcCCcchh----------------------------
Confidence 89999999997532 4689999999999999999999999743210
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHH---HHHHHHHHhCCCCEEEecccccccccccCCCCC----CCce
Q 010547 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRF 338 (507)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~---~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~----~~~~ 338 (507)
..+.+.++... +..+|..|..+. .. .+.++.+...++..+ ...|. ..++.+.+... ....
T Consensus 257 -g~Vedalea~~---------Gr~ih~~HiEga-g~~hapd~i~~~~~~~vlps-~t~Pt-~p~~~n~~~e~ld~l~v~h 323 (570)
T 4ac7_C 257 -GFLEDTLRAIN---------GRVIHSFHVEGA-GGGHAPDIMAMAGHPNVLPS-STNPT-RPFTVNTIDEHLDMLMVCH 323 (570)
T ss_dssp -CCHHHHHHHHT---------TCCEEETTTTST-TSSSTTTGGGGGGSTTEEEB-CCGGG-SSCBTTHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHhC---------CCcceeEeeecc-ccccChHHHHHhccCCcccc-ccCCC-CCcccchhHHhhhheeeec
Confidence 01123333322 666788887653 11 233443333332211 00111 00000000000 0000
Q ss_pred eEcCCC---------C-ChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-H--
Q 010547 339 KCAPPI---------R-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G-- 405 (507)
Q Consensus 339 ~~~p~~---------~-~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-- 405 (507)
...|.+ | ..........++..|+.++++||......... .....+...... .
T Consensus 324 hl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge---------------~~~~~~~~a~~~~~~r 388 (570)
T 4ac7_C 324 HLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGE---------------MVLRTWQTADKMKKQR 388 (570)
T ss_dssp TCCTTCHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTC---------------HHHHHHHHHHHHHHHH
T ss_pred ccCccccchhHHHHhhhhhhhcccccchhhcCCEEEEECcccccCCcCc---------------ccCcHHHHHHHHHHhc
Confidence 001111 0 11223344567778999999999764321100 000001100000 0
Q ss_pred --------HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe
Q 010547 406 --------RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 476 (507)
Q Consensus 406 --------~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
.+.+++++++++++|.|||+++|+ +++|+|++||.||||+||.+. + . .
T Consensus 389 g~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~---------~--~-~----------- 445 (570)
T 4ac7_C 389 GPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKF---------F--G-V----------- 445 (570)
T ss_dssp CSCTTCCTTCCHHHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGG---------T--T-T-----------
T ss_pred CCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchh---------c--c-C-----------
Confidence 122368899999999999999999 668999999999999999652 1 0 1
Q ss_pred eEEEEEEECCEEEEec
Q 010547 477 GKVLATISRGNLVYKE 492 (507)
Q Consensus 477 ~~V~~v~v~G~~v~~~ 492 (507)
+|..||++|++||+.
T Consensus 446 -~v~~t~~~G~~v~~~ 460 (570)
T 4ac7_C 446 -KADRVIKGGIIAYAQ 460 (570)
T ss_dssp -SCSEEEETTEEEEEE
T ss_pred -ceEEEEECCEEEEcc
Confidence 578999999999975
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=290.16 Aligned_cols=352 Identities=21% Similarity=0.241 Sum_probs=223.6
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC---------CCCCCCcEEecCCCEEecceeecccccCCCC
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP---------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~---------~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 111 (507)
...+++|+|++|+|++++..++|+|+||||++|++..... ....+.++||++|++|+|||||+|+|+..++
T Consensus 65 ~~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~Pg 144 (570)
T 4ubp_C 65 NVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPD 144 (570)
T ss_dssp TBCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCTT
T ss_pred CCCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccCCCCcc
Confidence 3678999999999988888999999999999999864321 0113678999999999999999999987643
Q ss_pred CCCCCChhHHHHHHHhCCceEEEeCCC------CCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHH
Q 010547 112 RTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (507)
Q Consensus 112 ~~~~~~~~~~~~~~l~~GvTt~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (507)
. .+.++++||||+++.+. ++.|.......+....+.++ ...+++.+++.... ...+++.++
T Consensus 145 ~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~-~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ubp_C 145 Q---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp H---------HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHT-TCSSEEEEEEECCC---SSHHHHHHH
T ss_pred h---------HHHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHHHHHhh-hCCeeEEEEeccCC---cCHHHHHHH
Confidence 2 36789999999996421 11222233455555555544 45688888775432 346788888
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHH
Q 010547 186 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (507)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (507)
.+.|+.+++.+..+ ..+++.+.++++.|++++.++.+|+++....
T Consensus 212 ~~aGa~gfK~~~~~-------~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~---------------------------- 256 (570)
T 4ubp_C 212 IDAGAAGLKIHEDW-------GATPASIDRSLTVADEADVQVAIHSDTLNEA---------------------------- 256 (570)
T ss_dssp HHHTCCEEEEEGGG-------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSS----------------------------
T ss_pred HHcCCCeEeeccCC-------CCCHHHHHHHHHHHHHcCCEEEEEcCCcchh----------------------------
Confidence 89999999997532 4689999999999999999999999743210
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHH---HHHHHHHHhCCCCEEEecccccccccccCCCCC----CCce
Q 010547 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRF 338 (507)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~---~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~----~~~~ 338 (507)
..+.+.++... +..+|..|..+. .. .+.++.+...++..+ ...|. ..++.+.+... ....
T Consensus 257 -g~Vedalea~~---------Gr~ih~~HiEga-g~~hapd~i~~~~~~~vlps-~t~Pt-~p~~~n~~~e~ld~l~v~h 323 (570)
T 4ubp_C 257 -GFLEDTLRAIN---------GRVIHSFHVEGA-GGGHAPDIMAMAGHPNVLPS-STNPT-RPFTVNTIDEHLDMLMVCH 323 (570)
T ss_dssp -CCHHHHHHHHT---------TCCEEETTTTST-TSSSTTTGGGGGGSTTEEEB-CCSTT-SSCBTTHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHhC---------CCceeEEEeccc-ccccChHHHHHhccCCcccc-ccCCC-CCcccchhHHhhhheeeec
Confidence 01123333322 666788887653 11 233443333332111 00111 00000000000 0000
Q ss_pred eEcCCC---------C-ChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-H--
Q 010547 339 KCAPPI---------R-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G-- 405 (507)
Q Consensus 339 ~~~p~~---------~-~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-- 405 (507)
...|.+ | ..........++..|+.++++||......... .....+...... .
T Consensus 324 hl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge---------------~~~~~~~~a~~~~~~r 388 (570)
T 4ubp_C 324 HLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGE---------------MVLRTWQTADKMKKQR 388 (570)
T ss_dssp TCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTC---------------HHHHHHHHHHHHHHHH
T ss_pred ccCccccchhHHHHhhhhhhccccccchhhcCCEEEEECcccccCCcCc---------------ccCcHHHHHHHHHHhc
Confidence 001111 0 11223344567778999999999764321100 000001100000 0
Q ss_pred --------HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe
Q 010547 406 --------RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 476 (507)
Q Consensus 406 --------~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
.+.+++++++++++|.|||+++|+ +++|+|++||.||||+||.+. + . .
T Consensus 389 g~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~---------~--~-~----------- 445 (570)
T 4ubp_C 389 GPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKF---------F--G-V----------- 445 (570)
T ss_dssp CSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGG---------T--T-T-----------
T ss_pred CCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECccc---------c--c-C-----------
Confidence 112367899999999999999999 668999999999999999652 1 0 1
Q ss_pred eEEEEEEECCEEEEec
Q 010547 477 GKVLATISRGNLVYKE 492 (507)
Q Consensus 477 ~~V~~v~v~G~~v~~~ 492 (507)
+|..||++|++||+.
T Consensus 446 -~v~~t~~~G~~v~~~ 460 (570)
T 4ubp_C 446 -KADRVIKGGIIAYAQ 460 (570)
T ss_dssp -SCSEEEETTEEEEEE
T ss_pred -CeeEEEECCEEEEec
Confidence 578999999999975
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=281.98 Aligned_cols=343 Identities=18% Similarity=0.189 Sum_probs=198.8
Q ss_pred ceEEEEe-cEEECCCC--------------ceeeeEEEeCCEEEEeecCC-C--CCCCCCCCcEEecCCCEEecceeecc
Q 010547 43 NQYWLTS-KRIVTPKG--------------VISGAVEIKEGNIISIVSEE-D--WPRNSKTGQVVDYGEAVIMPGLIDVH 104 (507)
Q Consensus 43 ~~~~i~n-~~i~~~~~--------------~~~~~I~I~dG~I~~Vg~~~-~--~~~~~~~~~viD~~g~~v~PGfID~H 104 (507)
.+++|+| ++|+|+++ +.+++|+|+||||++||+.. . .+ ..++||++|++|+|||||+|
T Consensus 5 ~d~li~n~g~I~t~~~~~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~----~~~viD~~G~~v~PGfID~H 80 (421)
T 2bb0_A 5 IDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYE----ADEIIDCSGRLVTPGLVDPH 80 (421)
T ss_dssp EEEEEEEEEEECCCCCSSCCCGGGGTCCCCEEEEEEEEETTEEEEEEETTTTTTCE----EEEEEECTTCEEEECEEECC
T ss_pred ccEEEECCcEEEecCCCccccccccccccccccceEEEECCEEEEEecccccccCC----CCeEEeCCCCEeccCeeccC
Confidence 5789999 99998753 34789999999999999764 2 21 35799999999999999999
Q ss_pred cccCCCCCCCC---------------------------------CChh----HHHHHHHhCCceEEEeCCCCCCCCCCC-
Q 010547 105 AHLDDPGRTEW---------------------------------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTIS- 146 (507)
Q Consensus 105 ~H~~~~~~~~~---------------------------------~~~~----~~~~~~l~~GvTt~~~~~~~~~p~~~~- 146 (507)
+|+........ +.+. ...+.++++||||+.+.. ........
T Consensus 81 ~H~~~~~~~~~~~~~~~~g~~~~~~~~~gggi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~ 159 (421)
T 2bb0_A 81 THLVFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKS-GYGLEKETE 159 (421)
T ss_dssp BCCCCCSCCGGGHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEEC-CSCCSHHHH
T ss_pred cCccccccchHHHHHHHhCCCHHHHhhcCCCcccchhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEecc-ccCcCccch
Confidence 99975432110 0011 123677899999999753 11110000
Q ss_pred HHHHHHHHHHHhc-CceeeEEEeccccCCCcc----cHHHHH-------HHHHcC-CcEEEEcccCCCCCCCCCCCHHHH
Q 010547 147 TETLKLKVDAAEK-RIYVDVGFWGGLVPENAY----NASALE-------ALLNAG-VLGLKSFMCPSGINDFPMTNASHI 213 (507)
Q Consensus 147 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l 213 (507)
...+....+.... ...+.....+ ....++. ..+.++ .+...+ ...++.+. +.+..+.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~e~l 232 (421)
T 2bb0_A 160 LKQLRVAKKLHESQPVDLVSTFMG-AHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFT------ETGVFTVSQS 232 (421)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEEE-ESSCCGGGTTCHHHHHHHHHTTHHHHHHTTCCSEEEEBB------CTTSBCHHHH
T ss_pred HHHHHHHHHHHhhcCceEEEEeec-cccCChhhcccHHHHHHHHHHhhHHhhccCccccccccC------CcCCCCHHHH
Confidence 1111121111111 2222221111 1111110 011111 111222 22232221 1234688999
Q ss_pred HHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEE
Q 010547 214 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 293 (507)
Q Consensus 214 ~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~ 293 (507)
+++++.|+++|.++.+|+..... . . .++. ..+. +. ..+.
T Consensus 233 ~~~~~~a~~~g~~v~~H~~~~~~-----------------------~-~-----~~~~----~~~~-------g~-~~~~ 271 (421)
T 2bb0_A 233 RRYLQKAAEAGFGLKIHADEIDP-----------------------L-G-----GAEL----AGKL-------KA-VSAD 271 (421)
T ss_dssp HHHHHHHHHTTCEEEEEECSSSC-----------------------C-S-----HHHH----HHHT-------TC-SEEE
T ss_pred HHHHHHHHHCCCCEEEEeccccc-----------------------c-C-----HHHH----HHHc-------CC-cEEh
Confidence 99999999999999999843210 0 0 1111 1111 21 2356
Q ss_pred ecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC-
Q 010547 294 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT- 372 (507)
Q Consensus 294 h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~- 372 (507)
|+.. -..+.++.+.+.|+.+ .+||..... +. +. ...++.+++++|+.+++|||+.+.
T Consensus 272 H~~~--~~~~~i~~~~~~g~~~--~~~p~~~~~----l~--~~------------~~~~~~~~~~~Gv~v~lgtD~~~~~ 329 (421)
T 2bb0_A 272 HLVG--TSDEGIKKLAEAGTIA--VLLPGTTFY----LG--KS------------TYARARAMIDEGVCVSLATDFNPGS 329 (421)
T ss_dssp ECTT--CCHHHHHHHHHHTCEE--EECHHHHHH----TT--CC------------CCCCHHHHHHTTCCEEECCCBBTTT
T ss_pred hhhc--CCHHHHHHHHHcCCeE--EECCchhhh----hc--cc------------ccchHHHHHHCCCeEEEeCCCCCCC
Confidence 7665 2334566666667644 345642210 00 00 011346778899999999997542
Q ss_pred ChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCC
Q 010547 373 VPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA 450 (507)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~ 450 (507)
+.... +...++ .....++|++++++++|.|||+++|+ +++|+|++||.||||++|.++
T Consensus 330 ~~~~~--------------------~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvvld~~~ 389 (421)
T 2bb0_A 330 SPTEN--------------------IQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPN 389 (421)
T ss_dssp BCCCC--------------------HHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSSCCSTTSBCCEEEESSSS
T ss_pred CcccC--------------------HHHHHHHHhcccCCCHHHHHHHHHHHHHHHhCccCCccccCCCCcCCEEEECCcc
Confidence 11110 222222 23467899999999999999999999 668999999999999999875
Q ss_pred ceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec-Cccc
Q 010547 451 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 496 (507)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~-g~~~ 496 (507)
...+.. .... .+|..||++|++||++ |+++
T Consensus 390 ~~~~~~----~~~~------------~~v~~t~v~G~~v~~~~g~~~ 420 (421)
T 2bb0_A 390 YMYIPY----HYGV------------NHVHQVMKNGTIVVNREGAIL 420 (421)
T ss_dssp TTHHHH----SCSS------------CCEEEEEETTEEEEEC-----
T ss_pred cccCHh----HcCC------------CceEEEEECCEEEEeCCcccc
Confidence 322110 0011 2699999999999975 7665
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=283.39 Aligned_cols=332 Identities=20% Similarity=0.185 Sum_probs=225.0
Q ss_pred CCcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG 117 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~ 117 (507)
..+.+++|+|++|+|+.. +..++|+|+||||++|++..... .+.++||++|++|+|||||+|+|+..+.. .
T Consensus 32 ~~~~dlli~n~~ivd~~~~~~~~~dI~I~~G~I~~Vg~~~~~~---~~~~vID~~G~~v~PG~ID~H~Hl~~~~~----~ 104 (608)
T 3nqb_A 32 DQRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRR---DAAQVIDAGGAYVSPGLIDTHMHIESSMI----T 104 (608)
T ss_dssp SSCEEEEEESCEEECTTTCCEEECEEEEETTEEEEEECTTSCC---CEEEEEECTTSEEEECEEEEEECGGGGTS----C
T ss_pred CCCCCEEEECeEEEECCCCeEEeeEEEEECCEEEEecCCCCCC---CCCeEEeCCCCEEecCeEecccCcccccC----C
Confidence 456789999999999863 66899999999999999865222 36789999999999999999999975332 3
Q ss_pred hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec-cccCC--------CcccHHHHHHHHH-
Q 010547 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-GLVPE--------NAYNASALEALLN- 187 (507)
Q Consensus 118 ~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~- 187 (507)
.....+.++++||||+++.+ ++.+.....+.+....+.... ...++.... +..+. .....++++++.+
T Consensus 105 ~~~~~~~al~~GvTtvv~~p-~~~~~v~g~~~~~~~l~~a~~-~~~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~ 182 (608)
T 3nqb_A 105 PAAYAAAVVARGVTTIVWDP-HEFGNVHGVDGVRWAAKAIEN-LPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSW 182 (608)
T ss_dssp HHHHHHHHHTTTEEEEEECC-HHHHHHHTHHHHHHHHHHHTT-CSSEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTS
T ss_pred HHHHHHHHHhCCeEEEEcCC-ccccccCCHHHHHHHHHHhhh-cCcEEEEeccccCCCCCccccCcccCCHHHHHHHHhc
Confidence 55667889999999999876 333444445566665555543 234444433 22221 1124567777775
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHH
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (507)
.++.+++.++.+.+ ....++.+.+.++.|++++.++.+|+..... .
T Consensus 183 ~~v~glgE~~~~~~----v~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~------------------------------~ 228 (608)
T 3nqb_A 183 PEIGGIAEIMNMRG----VIERDPRMSGIVQAGLAAEKLVCGHARGLKN------------------------------A 228 (608)
T ss_dssp TTEEEEEEECCHHH----HHTTCHHHHHHHHHHHHHTCEEEECCTTCCH------------------------------H
T ss_pred cCcceeeEeeccCC----cCCCcHHHHHHHHHHHHcCCEEEEcCCCCCH------------------------------H
Confidence 58888887764321 1246688999999999999999999964321 1
Q ss_pred HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh
Q 010547 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347 (507)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (507)
.+... .+. |... .|+... ..+.++. .+.|..+... .. ..
T Consensus 229 ~L~~~----~~a-------Gv~~--~H~~~~--~eea~e~-l~~G~~i~i~-gs------------------------~~ 267 (608)
T 3nqb_A 229 DLNAF----MAA-------GVSS--DHELVS--GEDLMAK-LRAGLTIELR-GS------------------------HD 267 (608)
T ss_dssp HHHHH----HHT-------TCCE--ECCCCS--HHHHHHH-HHTTCEEEEE-SS------------------------SG
T ss_pred HHHHH----HHc-------CCCe--eeccCC--HHHHHHH-HHCCCEEEEe-cc------------------------cc
Confidence 11222 211 4333 676653 2333333 3567655432 10 11
Q ss_pred hhHHHHHHHHh----cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhch
Q 010547 348 ANKEKLWEALM----DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERP 423 (507)
Q Consensus 348 ~~~~~~~~~l~----~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~ 423 (507)
.....+.+.+. .|..++++||+.+..... .. ..+...++.+.+.|++++++++++|.||
T Consensus 268 ~~~~~l~~~i~~~~~~g~~v~lgTD~~~p~~~~---~~--------------g~l~~~v~~~~~~Gls~~eal~~aT~n~ 330 (608)
T 3nqb_A 268 HLLPEFVAALNTLGHLPQTVTLCTDDVFPDDLL---QG--------------GGLDDVVRRLVRYGLKPEWALRAATLNA 330 (608)
T ss_dssp GGHHHHHHHHHHHTSCCTTEEEECBSCCHHHHH---HT--------------CSHHHHHHHHHHTTCCHHHHHHHHTHHH
T ss_pred ccHHHHHHHHHhHhhcCceEEEecCCCCCcchh---hh--------------cchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22233334443 689999999964321110 00 0144445555667999999999999999
Q ss_pred hHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC
Q 010547 424 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 424 A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~ 497 (507)
|++||++++|+|++|+.||||++|.-. +. .|..||++|++|+++|+++.
T Consensus 331 A~~lgl~~~G~i~~G~~ADlvv~d~l~-------------~~------------~v~~v~~~G~~v~~~g~~~~ 379 (608)
T 3nqb_A 331 AQRLGRSDLGLIAAGRRADIVVFEDLN-------------GF------------SARHVLASGRAVAEGGRMLV 379 (608)
T ss_dssp HHHHTCTTSSCCSTTSBCCEEEESCTT-------------TC------------CEEEEEETTEEEEETTEECS
T ss_pred HHHcCCCCCcCcCCCCCccEEEECCCC-------------CC------------cceEEEECCEEEEECCeEec
Confidence 999999778999999999999999411 11 68999999999999999873
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=283.25 Aligned_cols=378 Identities=16% Similarity=0.124 Sum_probs=214.9
Q ss_pred CCcceEEEEecEEECCCC-----ceeeeEEEeC-CEEEEeecCCCCC-----CCCCCCcEEec-CCCEEecceeeccccc
Q 010547 40 LPYNQYWLTSKRIVTPKG-----VISGAVEIKE-GNIISIVSEEDWP-----RNSKTGQVVDY-GEAVIMPGLIDVHAHL 107 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~-----~~~~~I~I~d-G~I~~Vg~~~~~~-----~~~~~~~viD~-~g~~v~PGfID~H~H~ 107 (507)
.++.+++|+|..|.++.. +.+++|+|+| |||++|++..+.+ ...++.++||+ +|++|+|||||+|+|+
T Consensus 28 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~ 107 (476)
T 4aql_A 28 MPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHA 107 (476)
T ss_dssp ---CCEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEG
T ss_pred CCCccEEEEccEEecCCCCceeEecCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccch
Confidence 456789999999987643 3589999998 9999999874321 11125689995 5899999999999998
Q ss_pred CCCCCCC---------C--------------C-----ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh-
Q 010547 108 DDPGRTE---------W--------------E-----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE- 158 (507)
Q Consensus 108 ~~~~~~~---------~--------------~-----~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~- 158 (507)
....... | + .+.....+++++||||+.++. . ...+......++..
T Consensus 108 ~~~~~rg~~~d~~l~~wL~~~~~p~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~-~-----~~~~~~~~~~~a~~~ 181 (476)
T 4aql_A 108 SQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFA-T-----IHTDSSLLLADITDK 181 (476)
T ss_dssp GGGGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEEC-C-----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHhhhhHHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEec-c-----cCchHHHHHHHHHHH
Confidence 5321110 0 0 111223578999999999774 1 11333222333332
Q ss_pred --cCceeeEEEecccc--CC----CcccH----HHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 010547 159 --KRIYVDVGFWGGLV--PE----NAYNA----SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226 (507)
Q Consensus 159 --~~~~~~~~~~~~~~--~~----~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 226 (507)
.+..+......... +. ..... +.++++...+...++..+.+ ...+.++++.++++.+.|++++.+
T Consensus 182 ~G~r~~~~~~~~d~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~~~v~~~l~p---~~~~~~s~e~l~~~~~~A~~~g~~ 258 (476)
T 4aql_A 182 FGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTP---RFSLSCSETLMGELGNIAKTRDLH 258 (476)
T ss_dssp HTCEEEEECEECSCCSSCTTSCCCHHHHHHHHHHHHHHHHHHTCSSEEECBEE---CCTTTSCHHHHHHHHHHHHHTTCC
T ss_pred hCCEEEEeeccccCCCCCcccccCHHHHHHHHHHHHHHHhcCCCCceEEEEeC---CcCCcCCHHHHHHHHHHHHHcCCc
Confidence 22221111111000 00 01112 23334433222234443333 344567999999999999999999
Q ss_pred EEEecCCccc-chhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHH
Q 010547 227 LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL 305 (507)
Q Consensus 227 v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i 305 (507)
+.+|+.+... +....... +. .....+...+.+ ..+.+..+.|+... ..+.+
T Consensus 259 v~~H~~e~~~e~~~~~~~~----------------~~------~~~~~~~~~~~g----~l~~~~~~~H~~~l--~~~~~ 310 (476)
T 4aql_A 259 IQSHISENRDEVEAVKNLY----------------PS------YKNYTSVYDKNN----LLTNKTVMAHGCYL--SAEEL 310 (476)
T ss_dssp EEEEESCSHHHHHHHHHHC----------------TT------SSSHHHHHHTTT----CCSTTEEEEECTTC--CHHHH
T ss_pred eEEEecCCHHHHHHHHHHh----------------CC------CCCHHHHHHHcC----CCCCCEEEEeCCCC--CHHHH
Confidence 9999854321 11111000 00 001122222221 11456778888763 33456
Q ss_pred HHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCcc
Q 010547 306 MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 385 (507)
Q Consensus 306 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~ 385 (507)
+.+++.|+.+. +||..-... + ....++.++++.|+.+++|||..+.....
T Consensus 311 ~~l~~~g~~v~--~~P~sn~~l-------~------------~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~--------- 360 (476)
T 4aql_A 311 NVFHERGASIA--HCPNSNLSL-------S------------SGFLNVLEVLKHEVKIGLGTDVAGGYSYS--------- 360 (476)
T ss_dssp HHHHHHTCEEE--ECHHHHHHT-------T------------CCCCCHHHHHHTTCEEEECCCTTTSSCCC---------
T ss_pred HHHHHcCCEEE--ECchhhhhh-------C------------cchHHHHHHHHCCCcEEEeCCCCCCCCCC---------
Confidence 66666776544 466321110 0 00113457788999999999976432111
Q ss_pred ccCCCCchhhh-HHHHHHHHH------HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCC
Q 010547 386 KAWGGISSLQF-VLPVTWSYG------RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDND 457 (507)
Q Consensus 386 ~~~~~~~~~~~-~l~~~~~~~------~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~ 457 (507)
.++. .....+... ...+++++++++++|.|||++||+ +++|+|++||.||||++|.+.+.. +..
T Consensus 361 -------~~~~~~~a~~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~-p~~ 432 (476)
T 4aql_A 361 -------MLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDS-PID 432 (476)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCTTC-SCC
T ss_pred -------HHHHHHHHHHHHhhhhcccCCCCcCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCCCCEEEEcCCCCCC-ccc
Confidence 0111 011111111 124799999999999999999999 568999999999999999885321 000
Q ss_pred CC----cccCCCCCccccCcEEee---EEEEEEECCEEEEecCc
Q 010547 458 HP----VHMKHPSISAYLGRRLSG---KVLATISRGNLVYKEGN 494 (507)
Q Consensus 458 ~~----~~~~~~~~~~~~~~~~~~---~V~~v~v~G~~v~~~g~ 494 (507)
. +..... .+|+.++...+ .|..|||+|++||+.+.
T Consensus 433 -~~~~~~~~~~~-~~~~~~~v~~~~~~~V~~v~v~G~~v~~~~~ 474 (476)
T 4aql_A 433 -LFYGDFFGDIS-EAVIQKFLYLGDDRNIEEVYVGGKQVVPFSS 474 (476)
T ss_dssp -CCTHHHHSSST-THHHHHHHHHCCGGGEEEEEETTEEEECCC-
T ss_pred -cccccccCCch-hcHHHHHhhcCCCCCccEEEECCEEEecCCC
Confidence 0 000112 44555554443 49999999999998643
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=291.66 Aligned_cols=374 Identities=15% Similarity=0.050 Sum_probs=217.7
Q ss_pred cceEEEEecEEECCCC---------------ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccc
Q 010547 42 YNQYWLTSKRIVTPKG---------------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~---------------~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H 106 (507)
+..++|++|+|+++.+ +.+++|+|+||||++||+..+.+..+.++++||++|++|+|||||+|+|
T Consensus 2 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~V~I~~G~I~~Vg~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H 81 (475)
T 2ood_A 2 SLTTVGIRGTFFDFVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIH 81 (475)
T ss_dssp -CCEEEEEEEEEEESSCGGGSTTCGGGGEEEEEEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEEEECEEEEEEE
T ss_pred CccceEEEEEEEecCCccccccccCCCcceEEECCEEEEECCEEEEEeChhhhccccCCCeEEeCCCcEEecceecCccc
Confidence 4556788999998644 3478999999999999975432100125689999999999999999999
Q ss_pred cCCCC------CC--C---------------CCCh----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc
Q 010547 107 LDDPG------RT--E---------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 159 (507)
Q Consensus 107 ~~~~~------~~--~---------------~~~~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~ 159 (507)
+.... .. . .+.+ ....+.++++||||+++++ .. ..+.+....+.+..
T Consensus 82 l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~-~~-----~~~~~~~~~~~~~~ 155 (475)
T 2ood_A 82 LPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFT-SS-----SPVATEELFEEASR 155 (475)
T ss_dssp GGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEEC-CS-----SHHHHHHHHHHHHH
T ss_pred HHhHhhcCCCCCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEec-cc-----CchhHHHHHHHHHH
Confidence 85321 10 0 1112 2235688999999999874 22 22333333333332
Q ss_pred C-ceeeE--EEeccccC----CC-cccHHHHHHHHH----cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhc-CCc
Q 010547 160 R-IYVDV--GFWGGLVP----EN-AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRP 226 (507)
Q Consensus 160 ~-~~~~~--~~~~~~~~----~~-~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~ 226 (507)
. ..+.. .......+ .. .+..+...++.+ .+.. +..+.+ ...+..+++.+.++++.|+++ +.+
T Consensus 156 ~g~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~e~l~~~~~~a~~~~g~~ 230 (475)
T 2ood_A 156 RNMRVIAGLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRN--LYAITP---RFAFGASPELLKACQRLKHEHPDCW 230 (475)
T ss_dssp HTCCEEECCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTE--EEEEEE---CBGGGCCHHHHHHHHHHHHHCTTSE
T ss_pred cCCeEEEEeeecccCCCcccccCHHHHHHHHHHHHHHhccCCce--EEEEec---cccCcCCHHHHHHHHHHHHhCCCCc
Confidence 1 11111 11110001 00 011222333332 3333 332222 223467889999999999999 999
Q ss_pred EEEecCCcc-cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHH
Q 010547 227 LLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL 305 (507)
Q Consensus 227 v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i 305 (507)
+.+|+.+.. .+.......+ . ....++++.+.+ ..+.+..+.|+... ..+.+
T Consensus 231 v~~H~~e~~~~~~~~~~~~g-------------~---------~~~~~~~~~~~g----~~~~~~~i~H~~~~--~~~~i 282 (475)
T 2ood_A 231 VNTHISENPAECSGVLVEHP-------------D---------CQDYLGVYEKFD----LVGPKFSGGHGVYL--SNNEF 282 (475)
T ss_dssp EEEECSCCHHHHHHHHHHCT-------------T---------CSSHHHHHHTTT----CCSTTEEEECCTTC--CHHHH
T ss_pred EEEeeCCChHHHHHHHHHcC-------------C---------CccHHHHHHHcC----CCCCCcEEEEeecC--CHHHH
Confidence 999996432 1111111000 0 001223333321 11455677888763 23556
Q ss_pred HHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCe--eEEeCCCCCCChhhhccccCC
Q 010547 306 MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDEGN 383 (507)
Q Consensus 306 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~--~~lgtD~~~~~~~~~~~~~~~ 383 (507)
+.+++.|+.+ .+||+.... + + ... .++.+++++|++ +++|||+.+..... +
T Consensus 283 ~~~~~~g~~~--~~~P~~~~~----l---~---~~~---------~~~~~~~~~Gv~~~~~lgTD~~~~~~~~-~----- 335 (475)
T 2ood_A 283 RRMSKKGAAV--VFCPCSNLF----L---G---SGL---------FRLGRATDPEHRVKMSFGTDVGGGNRFS-M----- 335 (475)
T ss_dssp HHHHHHTCEE--EECHHHHHH----T---T---CCC---------CCHHHHTCTTSCCEEEECCCBTTBSCCC-H-----
T ss_pred HHHHHcCCEE--EEChhhhhh----c---c---cCc---------CCHHHHHhCCCCCcEEEEccCCCCCCcC-H-----
Confidence 7777777644 446753210 0 0 011 134577889999 99999986522110 0
Q ss_pred ccccCCCCchhhhHHHHHHHH---------------------HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCC
Q 010547 384 FLKAWGGISSLQFVLPVTWSY---------------------GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 441 (507)
Q Consensus 384 ~~~~~~~~~~~~~~l~~~~~~---------------------~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~A 441 (507)
+.. +...... ..+.++|++++++++|.|||++||+ +++|+|++||.|
T Consensus 336 ----------~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~GsL~~Gk~A 404 (475)
T 2ood_A 336 ----------ISV-LDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEA 404 (475)
T ss_dssp ----------HHH-HHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBC
T ss_pred ----------HHH-HHHHHHHhcccchhccCCcccccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcc
Confidence 000 1111000 1236899999999999999999999 568999999999
Q ss_pred cEEEEcCCCceEeCCCCCcc------c----CCCCCccccCcEE---eeEEEEEEECCEEEEecCc
Q 010547 442 DLVVWEPEAEFELDNDHPVH------M----KHPSISAYLGRRL---SGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 442 Dlvvld~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~---~~~V~~v~v~G~~v~~~g~ 494 (507)
||||+|.+..+..+.. ... + +.. ++||.++.+ .+.|..|||+|++||++.+
T Consensus 405 Dlvvld~~~~~~~~~~-~~~~~~~~~s~~~~~~~-~~p~~~~~~~~~~~~V~~t~v~G~~v~~~~~ 468 (475)
T 2ood_A 405 DFVALDPNGGQLAQPW-HQSLIADGAGPRTVDEA-ASMLFAVMMVGDDRCVDETWVMGKRLYKKSE 468 (475)
T ss_dssp CEEEECTTCSSTTHHH-HHTTC--CCSCCSHHHH-HHHHHHHHHHCCGGGEEEEEETTEEEEECC-
T ss_pred CEEEEeCCCccccccc-cccccccccccccccch-hhHHHHHHhhCCCCCeeEEEECCEEEEECCC
Confidence 9999998864422110 000 0 012 456666655 3679999999999998754
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=285.76 Aligned_cols=351 Identities=17% Similarity=0.138 Sum_probs=198.8
Q ss_pred EEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC---------
Q 010547 45 YWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------- 113 (507)
Q Consensus 45 ~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~--------- 113 (507)
++|+|++|+|+++ ..+++|+|+||||++|++.. + +.+ ||++|++|+|||||+|+|+......
T Consensus 1 ~li~n~~v~~~~~~~~~~~~v~I~~g~I~~vg~~~--~----~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 73 (406)
T 1p1m_A 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGE--V----KVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFE 73 (406)
T ss_dssp CEEEEEEECCSTTSCCEEEEEEEETTEEEEEEESS--C----CCS-EECTTEEEEECEEEEEECGGGGGGTTSSCSCCHH
T ss_pred CEEEccEEEecCccccccceEEEECCEEEEeeCCC--C----cce-ecCCCcEEeecccchhhccchhhhccccCCCCHH
Confidence 4799999999765 56899999999999999764 2 457 9999999999999999999753211
Q ss_pred --------------CCCChhH----HHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC
Q 010547 114 --------------EWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 175 (507)
Q Consensus 114 --------------~~~~~~~----~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (507)
+.+.+.. ....++++||||+++++ . ..+.+.+..+....+....... .......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~~~~~~~~~~g~r~~~~~~~-~~~~~~~ 145 (406)
T 1p1m_A 74 EWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMY-F------HEEWIAKAVRDFGMRALLTRGL-VDSNGDD 145 (406)
T ss_dssp HHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEE-S------SHHHHHHHHHHHCCEEEEEEEE-CCBTTBC
T ss_pred HHHHhhhccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEech-h------CHHHHHHHHHHcCCEEEEEccc-ccCCCCH
Confidence 1111222 22567899999999875 1 1222222222221111111111 1111111
Q ss_pred cccHHHHHHHHH--cCC-cEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCc-ccchhhhhcccCcCCcc
Q 010547 176 AYNASALEALLN--AGV-LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTR 251 (507)
Q Consensus 176 ~~~~~~~~~~~~--~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~-~~~~~~~~~~~~~~~~~ 251 (507)
....+...+..+ .+. ..++..+.+ ......+++.+.++++.|+++|.++.+|+... ..+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~--------- 213 (406)
T 1p1m_A 146 GGRLEENLKLYNEWNGFEGRIFVGFGP---HSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLED--------- 213 (406)
T ss_dssp TTHHHHHHHHHHHHTTGGGTEEEEEEE---CCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCCTHH---------
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEec---CccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHHHHH---------
Confidence 222222222222 121 123332222 22234688999999999999999999999532 22110000
Q ss_pred ccccccCCCChhHHHHHHHHHHHH-HHhhccCCCCCCce-EEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 252 SYSTYLKTRPPSWEEAAIRELLTV-AKDTRTDGPAEGAH-LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~l-~~~~~~~~~~~g~~-~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
.+.. .++. |.. ..+.|+... . .++.+
T Consensus 214 --------------------~~~~g~~~~-------g~~~~~~~H~~~~-~------------------------~~~~~ 241 (406)
T 1p1m_A 214 --------------------ILNIGLKEV-------KTIAAHCVHLPER-Y------------------------FGVLK 241 (406)
T ss_dssp --------------------HHTTTTTTS-------CEEEEECTTCCGG-G------------------------TTTTT
T ss_pred --------------------hhhCCHhHc-------CcceeEeeeccCc-c------------------------cCCHH
Confidence 0000 0100 211 223333300 0 22222
Q ss_pred CCCCCCCceeEcCC--CCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-
Q 010547 330 EIPDGDTRFKCAPP--IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR- 406 (507)
Q Consensus 330 ~~~~~~~~~~~~p~--~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 406 (507)
.+.... ..+|. ++.......+++++++|+++++|||+.+.....++. .+..+...+....
T Consensus 242 ~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~Gv~~~lgtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 304 (406)
T 1p1m_A 242 DIPFFV---SHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNLF--------------FEMRLASLLQKAQN 304 (406)
T ss_dssp TSSEEE---EECHHHHHHTTCCCCCHHHHHHTTCEEEECCCCTTTTSCCCHH--------------HHHHHHHHHHHTTC
T ss_pred HHHHHH---HhCcHHHhhcCCCcCcHHHHHhCCCeEEEECCCCcCCCCCCHH--------------HHHHHHHHHhcccC
Confidence 111100 11110 000011224577889999999999987653211110 0111222222222
Q ss_pred hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE---eeEEEEEE
Q 010547 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATI 483 (507)
Q Consensus 407 ~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~V~~v~ 483 (507)
..++|++++++++|.|||+++|+++ |+|++||.||||++|.+..+..+. .+++.++.. .++|..||
T Consensus 305 ~~~ls~~~al~~~T~~~A~~lgl~~-G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~~~~~~~~~v~~v~ 373 (406)
T 1p1m_A 305 PRNLDVNTCLKMVTYDGAQAMGFKS-GKIEEGWNADLVVIDLDLPEMFPV----------QNIKNHLVHAFSGEVFATMV 373 (406)
T ss_dssp TTSSCHHHHHHHHTHHHHHHHTCSC-SSCCTTSBCCEEEEECCSGGGCSG----------GGHHHHHHHTCCSCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCC-cccCCCCcccEEEEeCCccccCCc----------cChHHHheEecCCCCceEEE
Confidence 4589999999999999999999966 999999999999999886543321 122221111 35799999
Q ss_pred ECCEEEEecCcccCCCCCcc
Q 010547 484 SRGNLVYKEGNHAPAACGSP 503 (507)
Q Consensus 484 v~G~~v~~~g~~~~~~~~~~ 503 (507)
++|++|| +|+++..+..+.
T Consensus 374 v~G~~v~-~g~~~~~d~~~~ 392 (406)
T 1p1m_A 374 AGKWIYF-DGEYPTIDSEEV 392 (406)
T ss_dssp TTEEEEE-TTBCTTSCHHHH
T ss_pred ECCEEEE-CCeeCCCCHHHH
Confidence 9999999 999987765543
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=276.31 Aligned_cols=351 Identities=16% Similarity=0.129 Sum_probs=212.7
Q ss_pred CCcceEEEEecEEECCCC--c-eeeeEEEeCCEEEEeecCCCCCCCCCCC--cEEecCCCEEecceeecccccCCCCC-C
Q 010547 40 LPYNQYWLTSKRIVTPKG--V-ISGAVEIKEGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDVHAHLDDPGR-T 113 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~--~-~~~~I~I~dG~I~~Vg~~~~~~~~~~~~--~viD~~g~~v~PGfID~H~H~~~~~~-~ 113 (507)
.+.++++|+|++|+++++ + .+++|+|+||||++|++.. .+ .+. ++||++|++|+|||||+|+|+..... .
T Consensus 4 ~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~-~~---~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~ 79 (418)
T 2qs8_A 4 DVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF-IS---SNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSK 79 (418)
T ss_dssp ---CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESC-CC---CTTSSEEEEEEEEEEEECEEEEEECTTCCCCCT
T ss_pred CCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeCCC-CC---CCCcceEEECCCCEECCCeeeeeeccccCCCCC
Confidence 455678999999999876 3 4689999999999999864 22 256 89999999999999999999976532 1
Q ss_pred CCC----Ch-------hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEe-------ccccC-C
Q 010547 114 EWE----GF-------PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW-------GGLVP-E 174 (507)
Q Consensus 114 ~~~----~~-------~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~ 174 (507)
.|+ .. ...++.++++||||+++++ ...+ ....+....+... .....+... ++... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~---~~~~~~~~~~~g~-~~~~r~~~~~~~~~~~g~~~~~~ 154 (418)
T 2qs8_A 80 AQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVG-DSGL---VAISLRDAINSGK-LAGPRIFAAGKTIATTGGHADPT 154 (418)
T ss_dssp TTSCSCCCHHHHHHHHHHHHHHHHHTTEEEEEECC-CSSS---HHHHHHHHHHTTS-SCCCEEEECCSCBEETTCTTCTT
T ss_pred chhhhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCC-CCcc---ccHHHHHHHHCCC-CCCCeEEecCccccccCCCcccc
Confidence 111 11 1156788999999999885 2111 1112222222111 011111111 11100 0
Q ss_pred ----------------CcccHH----HHHHHHHcCCcEEEEcccCC-----CCCCCCCCCHHHHHHHHHHHHhcCCcEEE
Q 010547 175 ----------------NAYNAS----ALEALLNAGVLGLKSFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLV 229 (507)
Q Consensus 175 ----------------~~~~~~----~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~~~~v~~ 229 (507)
.....+ .+++..+.|...+|.+.... ...+.+..++++++++++.|+++|.++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~ 234 (418)
T 2qs8_A 155 NGKAVDDYDYPVPEQGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGMWVAV 234 (418)
T ss_dssp TTCCGGGCCCCCGGGTEECSHHHHHHHHHHHHHHTCSEEEEECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccccccccccccccccCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 011122 33334456777888875321 11234568999999999999999999999
Q ss_pred ecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHH
Q 010547 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK 309 (507)
Q Consensus 230 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~ 309 (507)
|+.... .+...++. |. ..+.|+... ..+.++.++
T Consensus 235 H~~~~~--------------------------------~i~~~~~~-----------g~-~~i~H~~~~--~~~~i~~l~ 268 (418)
T 2qs8_A 235 HAHGAE--------------------------------GMKRAIKA-----------GV-DSIEHGTFM--DLEAMDLMI 268 (418)
T ss_dssp EECSHH--------------------------------HHHHHHHH-----------TC-SEEEECTTC--CHHHHHHHH
T ss_pred EECCHH--------------------------------HHHHHHHc-----------CC-CEEEECCCC--CHHHHHHHH
Confidence 995321 12333322 21 235666542 234566666
Q ss_pred hCCCCEEEecccccccccccCCCCCCCceeEcCCCCC-h-------hhHHHHHHHHhcCCeeEEeCCCCCCChhhhcccc
Q 010547 310 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD-A-------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE 381 (507)
Q Consensus 310 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-------~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~ 381 (507)
+.|+.+ ||....+.. +...+ .....|+... . .....+.++++.|+++++|||+.. .....
T Consensus 269 ~~gv~v----~p~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gTD~~~-~~~~~---- 336 (418)
T 2qs8_A 269 ENGTYY----VPTISAGEF--VAEKS-KIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGV-QKHGT---- 336 (418)
T ss_dssp HHTCEE----ECCHHHHHH--HHHHT-TSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCBTT-BCTTC----
T ss_pred HCCCEE----eeeechHHH--hhhhc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCc-CCcch----
Confidence 667542 343211100 00000 0011122211 1 123557888889999999999743 11100
Q ss_pred CCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCc
Q 010547 382 GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPV 460 (507)
Q Consensus 382 ~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~ 460 (507)
+...+....+.++|++++++++|.|||+++|+ +++|+|++||.||||++|.|+..++
T Consensus 337 ----------------~~~e~~~~~~~gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~------ 394 (418)
T 2qs8_A 337 ----------------NWKEFVYMVENGMPAMKAIQSATMETAKLLRIEDKLGSIESGKLADLIAVKGNPIEDI------ 394 (418)
T ss_dssp ----------------TTHHHHHHHHTTCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCG------
T ss_pred ----------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCccCEEEECCChhhCH------
Confidence 00112233456999999999999999999999 6689999999999999998753321
Q ss_pred ccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 461 HMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
.....|..||++|+++...
T Consensus 395 -------------~~~~~i~~v~~~G~~~~~~ 413 (418)
T 2qs8_A 395 -------------SVLENVDVVIKDGLLYEGH 413 (418)
T ss_dssp -------------GGGGGEEEEEETTEEEECC
T ss_pred -------------HHhcCccEEEECCEEEecc
Confidence 1113699999999998754
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=279.02 Aligned_cols=347 Identities=18% Similarity=0.166 Sum_probs=202.9
Q ss_pred ceEEEEecEEECCCC-------ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC--
Q 010547 43 NQYWLTSKRIVTPKG-------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-- 113 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~-------~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~-- 113 (507)
++++|+|++|+|+++ +.+++|+|+||||++||+..+.+.. .+.++||++|++|+|||||+|+|+......
T Consensus 5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~-~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~ 83 (416)
T 2q09_A 5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGP-YPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAE 83 (416)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC---CCTTSEECTTCEEEECEEEEEECCCCCSCCHH
T ss_pred ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhcccc-CCCeEEeCCCCEECCcccccccCcchhhhhHH
Confidence 468999999999765 2478999999999999986543321 145799999999999999999999765431
Q ss_pred -------------------------------CCCChh----HHHHHHHhCCceEEEeCCCCCCCCC-CCHHHHHHHHHHH
Q 010547 114 -------------------------------EWEGFP----SGTKAAAAGGITTLIDMPLNSDPST-ISTETLKLKVDAA 157 (507)
Q Consensus 114 -------------------------------~~~~~~----~~~~~~l~~GvTt~~~~~~~~~p~~-~~~~~~~~~~~~~ 157 (507)
+.+.+. ...+.++++||||+.++. ...... .....+....+..
T Consensus 84 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2q09_A 84 EFELRQKGVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKS-GYGLTLEDELKMLRVARRLG 162 (416)
T ss_dssp HHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEEC-CSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHhhhcCCcEeehhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEecc-CcccChHhHHHHHHHHHHHH
Confidence 011111 123678899999999864 111110 0011222222211
Q ss_pred h-cCceeeEEEeccc-cCCC--cccHHHH--------HHHHHcC-CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 010547 158 E-KRIYVDVGFWGGL-VPEN--AYNASAL--------EALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224 (507)
Q Consensus 158 ~-~~~~~~~~~~~~~-~~~~--~~~~~~~--------~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 224 (507)
. ....+.....+.. .... ....+.+ ..+...+ ...++.+ .+.+..+++.+.++++.|++.|
T Consensus 163 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~g 236 (416)
T 2q09_A 163 EALPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVF------CEHIGFSLAQTEQVYLAADQYG 236 (416)
T ss_dssp HHSSSEEEEEEEEETSCCGGGTTCHHHHHHHHHHTHHHHHHHTTCCSEEEEB------BSTTSBCHHHHHHHHHHHHHTT
T ss_pred hhCCceEEEeeeccccCCccccCCHHHHHHHHHhhhhHHHHhcccccccccc------cCCCcCCHHHHHHHHHHHHHCC
Confidence 1 1222221111111 1100 0001111 1222233 2333332 2223568899999999999999
Q ss_pred CcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHH
Q 010547 225 RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDL 304 (507)
Q Consensus 225 ~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~ 304 (507)
+++.+|+..... .. .+... .+. |. ..+.|+..- ..+.
T Consensus 237 ~~v~~H~~~~~~------------------------~~-----~~~~~----~~~-------g~-~~~~H~~~~--~~~~ 273 (416)
T 2q09_A 237 LAVKGHMDQLSN------------------------LG-----GSTLA----ANF-------GA-LSVDHLEYL--DPEG 273 (416)
T ss_dssp CEEEEEESSSCC------------------------CS-----HHHHH----HHT-------TC-SEEEECTTC--CHHH
T ss_pred CcEEEEECCCCc------------------------hH-----HHHHH----HHc-------CC-CEEeecccC--CHHH
Confidence 999999853211 00 11111 111 22 235566542 2345
Q ss_pred HHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCc
Q 010547 305 LMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 384 (507)
Q Consensus 305 i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~ 384 (507)
++.+++.|+.+ ..||....... + ... .++.+++++|+++++|||+.+.....
T Consensus 274 ~~~~~~~g~~~--~~~p~~~~~~~------~---~~~---------~~~~~~~~~Gv~~~~gtD~~~~~~~~-------- 325 (416)
T 2q09_A 274 IQALAHRGVVA--TLLPTAFYFLK------E---TKL---------PPVVALRKAGVPMAVSSDINPGTAPI-------- 325 (416)
T ss_dssp HHHHHHHTCEE--EECHHHHHHTT------C---CCC---------CCHHHHHHTTCCEEECCCCBTTTBCC--------
T ss_pred HHHHHHcCCeE--EEcCccHHhhc------c---ccc---------cCHHHHHHCCCeEEEecCCCCccCCC--------
Confidence 66666677654 34664322110 0 001 13457788999999999976431100
Q ss_pred cccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccC
Q 010547 385 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 463 (507)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~ 463 (507)
...+..+.......++|++++++++|.|||+++|+ +++|+|++||.||||++|.++....
T Consensus 326 ----------~~~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~--------- 386 (416)
T 2q09_A 326 ----------VSLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLVWNCGHPAEL--------- 386 (416)
T ss_dssp ----------CCHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSSCTTHH---------
T ss_pred ----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCccceecCCCCCccEEEECCCchhhh---------
Confidence 00022222233467899999999999999999999 5689999999999999998753321
Q ss_pred CCCCccccCcEEeeEEEEEEECCEEEEecCc
Q 010547 464 HPSISAYLGRRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 464 ~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
++.. ...+|..||++|++||+++-
T Consensus 387 -----~~~~--~~~~v~~v~v~G~~v~~~~~ 410 (416)
T 2q09_A 387 -----SYLI--GVDQLVSRVVNGEETLHGEG 410 (416)
T ss_dssp -----HHSC--SCCCEEEEEETTEECCC---
T ss_pred -----hhhh--ccCcceEEEECCEEEEeCCC
Confidence 1111 12369999999999997753
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=280.38 Aligned_cols=369 Identities=15% Similarity=0.094 Sum_probs=209.0
Q ss_pred CCcceEEEEecEEECCCC-----ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC--
Q 010547 40 LPYNQYWLTSKRIVTPKG-----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-- 112 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~-----~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~-- 112 (507)
+.+.+++|+|++|++++. +.+++|+|+||||++|++....+ +.+.++||++|++|+|||||+|+|+.....
T Consensus 6 ~~m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~~--~~~~~viD~~G~~v~PGlID~H~H~~~~~~~g 83 (439)
T 2i9u_A 6 KDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDK--YKGNPIIDFRNNIIIPGMNDLHAHASQYKNLG 83 (439)
T ss_dssp ---CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCGG--GTTSCEEEEEEEEEEECEEEEEEEGGGGGGTT
T ss_pred CCcccEEEEeeEEEecCCccceEEeccEEEEECCEEEEeccccccc--CCCceEEcCCCeEEEecceecccccchHhhhC
Confidence 345778999999999872 35889999999999999643221 125689999999999999999999975311
Q ss_pred -CCC---------------------CChhH----HHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc-CceeeE
Q 010547 113 -TEW---------------------EGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDV 165 (507)
Q Consensus 113 -~~~---------------------~~~~~----~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~ 165 (507)
... +.+.. ..+.++++||||+++++ +. ..+......+.+.. ......
T Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~-----~~~~~~~~~~~~~~~g~r~~~ 157 (439)
T 2i9u_A 84 IGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFA-TL-----HKDSTIELFNMLIKSGIGAYV 157 (439)
T ss_dssp CCCSSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEEC-CS-----CHHHHHHHHHHHHHHTCEEEE
T ss_pred CcCCCCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEcc-cc-----ccchHHHHHHHHHHcCCEEEE
Confidence 000 01111 23578999999999875 21 23333333333322 111111
Q ss_pred --EEeccccCC-C-c---ccHHHHHHHHH---cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcc
Q 010547 166 --GFWGGLVPE-N-A---YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (507)
Q Consensus 166 --~~~~~~~~~-~-~---~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 235 (507)
.......+. . . ...+...++.+ .+...++.++.+ ...+..+++.+.++++.|+++|.++.+|+.+..
T Consensus 158 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 234 (439)
T 2i9u_A 158 GKVNMDYNCPDYLTENYITSLNDTEEIILKYKDKSNIVKPIITP---RFVPSCSNELMDGLGKLSYKYRLPVQSHLSENL 234 (439)
T ss_dssp ECEECCSSCCTTSCCCHHHHHHHHHHHHHHHTTTCSSEEECBEE---CCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCH
T ss_pred EeeeccccCCcccchhHHHHHHHHHHHHHHHhCCCCceEEEEec---CCcCcCCHHHHHHHHHHHHhcCCcEEEeecCCh
Confidence 111100010 0 0 11222233322 222224444332 222356899999999999999999999996532
Q ss_pred c-chhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCC-ceEEEEecCChhHHHHHHHHHHhCCC
Q 010547 236 G-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG-AHLHIVHLSDASSSLDLLMEAKTNGD 313 (507)
Q Consensus 236 ~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g-~~~~~~h~~~~~~~~~~i~~~~~~g~ 313 (507)
. +....... ...|. .++...+.+. .+ .+..+.|+.+. ..+.++.+++.|+
T Consensus 235 ~~~~~~~~~~-------------~~~~~---------~~~~~~~~g~----~~~~~~~i~H~~~~--~~~~~~~l~~~g~ 286 (439)
T 2i9u_A 235 DEIAVVKSLH-------------KKSNF---------YGEVYDKFGL----FGNTPTLMAHCIHS--SKEEINLIKRNNV 286 (439)
T ss_dssp HHHHHHHHHC-------------TTCSS---------HHHHHHHTTC----SSSSCEEEEECCSC--CHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-------------CCCCC---------HHHHHHHcCC----CCCCCeEEEEEecC--CHHHHHHHHHcCC
Confidence 1 11111000 00000 1112222211 13 44567777653 2245666667775
Q ss_pred CEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCch
Q 010547 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393 (507)
Q Consensus 314 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (507)
. +.+||+.... + +. ..+ ++.+++++|+++++|||+.+... . ..
T Consensus 287 ~--~~~~p~~~~~----l---~~---~~~---------~~~~~~~~Gv~~~lgtD~~~~~~-~---------------~~ 329 (439)
T 2i9u_A 287 T--IVHCPTSNFN----L---GS---GMM---------PVRKYLNLGINVVLGSDISAGHT-C---------------SL 329 (439)
T ss_dssp E--EEECHHHHHH----T---TC---CCC---------CHHHHHHTTCEEEECCCBTTBCC-S---------------CH
T ss_pred E--EEECccchhh----c---cc---ccC---------CHHHHHHCCCcEEEecCCCCCCC-c---------------CH
Confidence 4 4456653210 0 00 111 24567889999999999865211 0 00
Q ss_pred hhh-HHHHHHHHHH-------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCC
Q 010547 394 LQF-VLPVTWSYGR-------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465 (507)
Q Consensus 394 ~~~-~l~~~~~~~~-------~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~ 465 (507)
... .+...+.... ..++|++++++++|.|||++|| ++|+|++||.|||||+|.+..+..+ . ..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg--~~Gsl~~G~~ADlvvld~~~~~~~~-~------~~ 400 (439)
T 2i9u_A 330 FKVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFG--KVGSFEEGYDFDALVINDSNLYPED-Y------DL 400 (439)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTS--SCSSCSTTCBCCEEEECCTTSCGGG-S------CH
T ss_pred HHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHHHhc--cCCccCCCCccCEEEEeCCCccccC-C------Cc
Confidence 110 0111111111 3689999999999999999999 6899999999999999988644320 0 11
Q ss_pred CCccccCcEEee---EEEEEEECCEEEEecCc
Q 010547 466 SISAYLGRRLSG---KVLATISRGNLVYKEGN 494 (507)
Q Consensus 466 ~~~~~~~~~~~~---~V~~v~v~G~~v~~~g~ 494 (507)
++|+.++...+ .|..||++|++||++++
T Consensus 401 -~~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~ 431 (439)
T 2i9u_A 401 -TERLERFIYLGDDRNIMKRYVCGNEIFGPKF 431 (439)
T ss_dssp -HHHHHHHHHHCCGGGEEEEEETTEEEC----
T ss_pred -cCHHHHheecCCCCCeeEEEECCEEEeeCCC
Confidence 34444443322 79999999999998754
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=271.75 Aligned_cols=345 Identities=19% Similarity=0.157 Sum_probs=198.1
Q ss_pred CCcceEEEEecEEECCCC-------ceeeeEEEeCCEEEEeecCCCCCCCC-CCCcEEecCCCEEecceeecccccCCCC
Q 010547 40 LPYNQYWLTSKRIVTPKG-------VISGAVEIKEGNIISIVSEEDWPRNS-KTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~-------~~~~~I~I~dG~I~~Vg~~~~~~~~~-~~~~viD~~g~~v~PGfID~H~H~~~~~ 111 (507)
.++.+++|+|++++|+++ +.+++|+|+||||++||+..+.+... ++.++||++|++|+|||||+|+|+....
T Consensus 12 ~~~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~ 91 (419)
T 2puz_A 12 TGNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGG 91 (419)
T ss_dssp ---CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEEECEEECCCCCCCSS
T ss_pred CCCCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhccCCCeEEeCCCCEeCcCceecccCccchh
Confidence 345689999999999754 24789999999999999875433210 1358999999999999999999986543
Q ss_pred CCC---------------------------------CCCh----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHH
Q 010547 112 RTE---------------------------------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 154 (507)
Q Consensus 112 ~~~---------------------------------~~~~----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~ 154 (507)
... .+.+ ......++++|||++.+.. .............+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~ 170 (419)
T 2puz_A 92 NRAMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKS-GYGLDIETELKMLRVA 170 (419)
T ss_dssp CCHHHHHHHHTTCCHHHHHHTTCSHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEEC-CSCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHhcCCCeecchhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCC-CCCCCchhHHHHHHHH
Confidence 210 0001 1123677899999998753 1111000111122222
Q ss_pred HHHhcCceeeEEE-eccccCCCcc-------cH-----HHHHHHHHcC-CcEEEEcccCCCCCCCCCCCHHHHHHHHHHH
Q 010547 155 DAAEKRIYVDVGF-WGGLVPENAY-------NA-----SALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVL 220 (507)
Q Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~-------~~-----~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 220 (507)
+.+.....+.+.. ..+.....+. .. +.+..+...+ ....+.+ .+....+++.+.++++.|
T Consensus 171 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a 244 (419)
T 2puz_A 171 RRLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAHAEGLADAVDGF------CEGIAFSVKEIDRVFAAA 244 (419)
T ss_dssp HHHTTTSSCEEEEEECCTTCCCGGGTTCHHHHHHHTHHHHHHHHHHTTCCSEECCE------ESTTSBCHHHHHHHHHHH
T ss_pred HHHhhhcCceEEEEecccccCchhhcccHHHHHHHHHhhhhhhhhhcccccccccc------cCCCCcCHHHHHHHHHHH
Confidence 2222222222211 1111111110 01 1112222222 2222211 112346789999999999
Q ss_pred HhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH
Q 010547 221 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 300 (507)
Q Consensus 221 ~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~ 300 (507)
+++|+++.+|+..... .. .++. ..+. |. ..+.|+...
T Consensus 245 ~~~g~~v~~H~~~~~~------------------------~~-----~~~~----~~~~-------g~-~~~~H~~~~-- 281 (419)
T 2puz_A 245 QQRGLPVKLHAEQLSN------------------------LG-----GAEL----AASY-------NA-LSADHLEYL-- 281 (419)
T ss_dssp HHTTCCBEEEESSSSC------------------------CS-----HHHH----HHHT-------TC-SEEEECTTC--
T ss_pred HHCCCcEEEEeccccc------------------------CC-----HHHH----HHhc-------CC-ceehHhccC--
Confidence 9999999999853210 00 1111 1111 21 235677652
Q ss_pred HHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCC-hhhhcc
Q 010547 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV-PELKLL 379 (507)
Q Consensus 301 ~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~-~~~~~~ 379 (507)
..+.++.+++.|+.+. ++|....... +. . ..++..++++|+++++|||+.+.. ....
T Consensus 282 ~~~~~~~~~~~g~~~~--~~p~~~~~l~------~~---~---------~~~~~~~~~~Gv~~~lgsD~~~~~~~~~~-- 339 (419)
T 2puz_A 282 DETGAKALAKAGTVAV--LLPGAFYALR------EK---Q---------LPPVQALRDAGAEIALATDCNPGTSPLTS-- 339 (419)
T ss_dssp CHHHHHHHHHHTCEEE--ECHHHHHHHT------CC---C---------CCCHHHHHHHTCCEEECCCCCSSSCCBCC--
T ss_pred CHHHHHHHHHcCCcEE--ECCchhhhhc------cc---c---------cccHHHHHHCCCeEEEECCCCCCCCcccc--
Confidence 2345666666676543 3553211000 00 0 012356677899999999986531 1100
Q ss_pred ccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCC
Q 010547 380 DEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDND 457 (507)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~ 457 (507)
+...++ .....++|++++++++|.|||+++|+ +++|+|++||.||||+||.++...+..
T Consensus 340 ------------------l~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~~~~~~~~~- 400 (419)
T 2puz_A 340 ------------------LLLTMNMGATLFRMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELVY- 400 (419)
T ss_dssp ------------------HHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECCSSTTHHHH-
T ss_pred ------------------HHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCCccccCCCCcCCEEEECCCchhcchh-
Confidence 222222 23456899999999999999999999 568999999999999999875432210
Q ss_pred CCcccCCCCCccccCcEEeeEEEEEEECCEEEE
Q 010547 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490 (507)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~ 490 (507)
.... ..|..||++|++|.
T Consensus 401 ---~~~~------------~~v~~v~v~G~~v~ 418 (419)
T 2puz_A 401 ---RIGF------------NPLHARIFKGQKVS 418 (419)
T ss_dssp ---CBSC------------CCEEEEEETTEECC
T ss_pred ---hhcC------------CceEEEEECCEEcC
Confidence 0011 26999999999874
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=275.84 Aligned_cols=376 Identities=14% Similarity=0.107 Sum_probs=207.9
Q ss_pred EEEEecEEECCCCc-eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC---CCC---
Q 010547 45 YWLTSKRIVTPKGV-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---WEG--- 117 (507)
Q Consensus 45 ~~i~n~~i~~~~~~-~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~---~~~--- 117 (507)
++|+|++|++++++ .+++|+| ||+|++||+..+.+..+++.++||++|++|+|||||+|+|+....... ...
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i-~g~I~~Vg~~~~~~~~~~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~~~l~~ 80 (427)
T 3v7p_A 2 RIIKPFAILTPQTIIQDKAVAF-DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIP 80 (427)
T ss_dssp EEEEEEEEECSSSEEESCEEEE-SSBEEEEECHHHHHHHCTTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCCSSHHH
T ss_pred EEEECCEEEcCCCEEeCcEEEE-CCEEEEecChhhhccccCCceEEeCCCCEEecCEeecccCcchhhcccccccCCHHH
Confidence 68999999999884 4899999 999999998654332223678999999999999999999997543321 000
Q ss_pred --------------------hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcc
Q 010547 118 --------------------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY 177 (507)
Q Consensus 118 --------------------~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (507)
......+++++||||+.++. .. + .. + +.... .+... ....+.....+.
T Consensus 81 wl~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~-~~-~--~~---~-~a~~~--~Gir~--~~~~~~~~~~~~ 148 (427)
T 3v7p_A 81 WLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAIS-SY-G--ED---L-QACID--SALKV--VYFNEVIGSNAA 148 (427)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTEEEEEEEE-SS-S--TT---H-HHHHH--BSSEE--EEEEEECBCCGG
T ss_pred HHHHHHHhHHhcCHHHHHHHHHHHHHHHHHhCCEEEEEec-Cc-H--HH---H-HHHHh--cCCeE--EEeccccCCChh
Confidence 12234468899999999875 21 1 11 1 11111 12111 111111122221
Q ss_pred c-H---H----HHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCcC
Q 010547 178 N-A---S----ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTL 248 (507)
Q Consensus 178 ~-~---~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~~ 248 (507)
. . + .+..........++..+.+ ......+++.++++++.|++++.++.+|+.+... +.......+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~~g~~~ 225 (427)
T 3v7p_A 149 TADVMYASFLERFHQSKKHENERFKAAVAI---HSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFA 225 (427)
T ss_dssp GHHHHHHHHHHHHHHHHTTCBTTEEEEEEE---CCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHSCSHHH
T ss_pred hhhHHHHHHHHHHHHhhhccCCceEEEEec---CCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhcCcch
Confidence 1 1 1 1122111111122222221 2334578999999999999999999999754332 111111000000
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccc
Q 010547 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (507)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~ 328 (507)
+ .....+....|... ....+.++ .+.+..+.|+... ..+.++.+++.|+. ..+||.......
T Consensus 226 ~-~~~~~~~~~~~~~~----~~~~l~~~---------~~~~~~~~H~~~~--~~~~~~~l~~~g~~--~~~~p~s~~~~~ 287 (427)
T 3v7p_A 226 K-FFKEFLNQTRPVND----TKSFLELF---------KELHTLFVHMVWA--NEEEIQTIASYNAH--IIHCPISNRLLG 287 (427)
T ss_dssp H-HHHHHTCCCSCSSC----HHHHHHTT---------TTSEEEEEECTTC--CHHHHHHHHHSEEE--EEECHHHHHHTT
T ss_pred h-hhhhhccCCCcccC----HHHHHhhh---------cCCCEEEEECCCC--CHHHHHHHHHcCCE--EEECHHHHHHhc
Confidence 0 00000000001000 11111111 1666788888763 34456677777754 444664321110
Q ss_pred cCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhH-HHHHHHHHHh
Q 010547 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGRK 407 (507)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 407 (507)
...++++. + +|+.+++|||+.+++...++ ++.. ..........
T Consensus 288 ----------~~~~~~~~----------~-~Gv~v~lgtD~~~~~~~~~~---------------~~~~~~a~~~~~~~~ 331 (427)
T 3v7p_A 288 ----------NGVLDLEK----------I-KSIPYAIATDGLSSNYSLNM---------------YEELKAALFVHPNKE 331 (427)
T ss_dssp ----------CCCCCTTT----------T-TTSCEEECCCCTTSCSCCCH---------------HHHHHHHHHHSTTSC
T ss_pred ----------CCCCCHHH----------H-CCCeEEEeCCCCCCCCCCCH---------------HHHHHHHHHhccCCC
Confidence 01122322 2 79999999997544322111 1110 1111110111
Q ss_pred cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCE
Q 010547 408 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 487 (507)
Q Consensus 408 ~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~ 487 (507)
..++++++++++|.|||+++|++ .|+|++|+.|||+++|.+.++..+. ..++......+.|..||++|+
T Consensus 332 ~~~~~~~~~~~~t~~~a~~~g~~-~g~l~~G~~Ad~~~~d~~~~~~~~~----------~~~~~~~~~~~~v~~v~v~G~ 400 (427)
T 3v7p_A 332 ATTFAKELIIRATKAGYDALGFE-GGEIAVGKDADMQLIDLPEGLTNVE----------DLYLHVILHTTKPKKVYIQGE 400 (427)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTCS-CSSCCTTSBCCEEEEECCTTCCCGG----------GHHHHHHHHCSSCSEEEETTE
T ss_pred cccCHHHHHHHHHHHHHHHhCCC-CceeCCCCccCEEEEcCCCccCCCc----------cchHHHhcccCCccEEEECCE
Confidence 12567999999999999999996 8999999999999999886543221 222222222457999999999
Q ss_pred EEEecCcccCCCCC
Q 010547 488 LVYKEGNHAPAACG 501 (507)
Q Consensus 488 ~v~~~g~~~~~~~~ 501 (507)
+||++|+++....+
T Consensus 401 ~v~~~g~~~~~~~~ 414 (427)
T 3v7p_A 401 EHVREAENLYFQSH 414 (427)
T ss_dssp EEEC---CCCBC--
T ss_pred EEEECCcccCCccc
Confidence 99999999865443
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=262.40 Aligned_cols=338 Identities=20% Similarity=0.209 Sum_probs=208.0
Q ss_pred cceEEEEecEEECCCC-ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC-----
Q 010547 42 YNQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW----- 115 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~-~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~----- 115 (507)
+.+++|+|++|+|+++ ...++|+|+||+|++|++..+ + .+.++||++|++|+|||||+|+|++.......
T Consensus 4 ~~~~~i~~~~i~~~~~~~~~~~v~i~~g~I~~i~~~~~-~---~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~~~~~~~ 79 (396)
T 3ooq_A 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIE-D---PDAEIVDLTGKFLFPGFVDAHSHIGLFEEGVGYYYSD 79 (396)
T ss_dssp --CEEEEEEEECCSSSCCEEEEEEEETTEEEEEESCCC-C---TTSEEEECTTCEEEECEEEEEECTTTSCTTSCGGGCC
T ss_pred cceEEEECcEEEeCCCCeEEeEEEEECCEEEEecCCCC-C---CCCeEEECCCCEEecCEEecccccCccccCccccccc
Confidence 4578999999999886 445999999999999998765 2 37899999999999999999999975321100
Q ss_pred --------------C----ChhHHHHHHHhCCceEEEeCCCCCCCCC---------CCHHHHHHHHHHHhcCceeeEEEe
Q 010547 116 --------------E----GFPSGTKAAAAGGITTLIDMPLNSDPST---------ISTETLKLKVDAAEKRIYVDVGFW 168 (507)
Q Consensus 116 --------------~----~~~~~~~~~l~~GvTt~~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 168 (507)
. ........++++||||+.+++ ++.+.. .. ..... ... .....+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-gs~~~i~G~~~~~~~~~-~~~~~---~~~-~~~~~i~~~ 153 (396)
T 3ooq_A 80 GNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVP-GSANPVGGQGSVIKFRS-IIVEE---CIV-KDPAGLKMA 153 (396)
T ss_dssp SCCTTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECC-CSSSSEEEEEEEEESCC-SSHHH---HEE-EEEEEEEEE
T ss_pred cccccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccC-CCCCcccCeeEEEeccC-CCHHH---cee-cCCcEEEEE
Confidence 0 011467889999999999986 332111 10 01111 111 111111111
Q ss_pred cccc--------CCCcc----cHHHHHHHHHcCCcEEEE---cccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 169 GGLV--------PENAY----NASALEALLNAGVLGLKS---FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 169 ~~~~--------~~~~~----~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
.+.. ...+. ..+.+++....+....+. .....+.. ...+...+.+..+.+.+.++.+|+..
T Consensus 154 ~g~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~e~l~~~~~~~~~v~iHa~~ 229 (396)
T 3ooq_A 154 FGENPKRVYGERKQTPSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEF----TETDLKMEVGEMVLRKKIPARMHAHR 229 (396)
T ss_dssp CSHHHHHHHHHTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----CCCCHHHHHHHHHHTTSSCEEEEECS
T ss_pred cCCCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCC----CCcChhHHHHHHHHcCCCcEEEEECc
Confidence 1110 11111 112333332211100000 00000111 12233344444456889999999954
Q ss_pred cccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCC
Q 010547 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 313 (507)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~ 313 (507)
.. .+...++++.+. |.++.+.|+..... .++.+++.|+
T Consensus 230 ~~--------------------------------~i~~~~~~~~~~-------g~~~~i~H~~~~~~---~~~~l~~~gv 267 (396)
T 3ooq_A 230 AD--------------------------------DILTAIRIAEEF-------GFNLVIEHGTEAYK---ISKVLAEKKI 267 (396)
T ss_dssp HH--------------------------------HHHHHHHHHHHH-------TCCEEEEECTTGGG---GHHHHHHHTC
T ss_pred hh--------------------------------HHHHHHHHHHHc-------CCCEEEecCchHHH---HHHHHHHCCC
Confidence 32 234566666665 67788999987522 3667777787
Q ss_pred CEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCch
Q 010547 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393 (507)
Q Consensus 314 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (507)
.+.. ||.........+ .......+..+++.|+.++++||+.......
T Consensus 268 ~v~~--~P~~~~~~~~~~--------------~~~~~~~~~~l~~~Gv~v~lgtD~~~~~~~~----------------- 314 (396)
T 3ooq_A 268 PVVV--GPLLTFRTKLEL--------------KDLTMETIAKLLKDGVLIALMCDHPVIPLEF----------------- 314 (396)
T ss_dssp CEEE--CCCSSCCCSGGG--------------TTCCTTHHHHHHHTTCCEEECCTTTTSCGGG-----------------
T ss_pred CEEE--CcccccccchhH--------------HhhhhHHHHHHHHCCCEEEEEcCCCccCccH-----------------
Confidence 7654 553221110000 0112235677888999999999975332211
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccC
Q 010547 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 472 (507)
Q Consensus 394 ~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (507)
+......+.+.+++++++++++|.|||++||+ +++|+|++||.||||++|.++.. . .
T Consensus 315 ----l~~~~~~~~~~gl~~~~al~~~T~n~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~---------~-~-------- 372 (396)
T 3ooq_A 315 ----ATVQAATAMRYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFD---------M-K-------- 372 (396)
T ss_dssp ----HHHHHHHGGGGTCCHHHHHHTTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTS---------T-T--------
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCeeeECCCCcCCEEEECCCccc---------c-c--------
Confidence 33344556678999999999999999999999 66899999999999999976321 1 1
Q ss_pred cEEeeEEEEEEECCEEEEecCc
Q 010547 473 RRLSGKVLATISRGNLVYKEGN 494 (507)
Q Consensus 473 ~~~~~~V~~v~v~G~~v~~~g~ 494 (507)
..|..||++|++||++.+
T Consensus 373 ----~~v~~v~~~G~~v~~~~~ 390 (396)
T 3ooq_A 373 ----SVVERVYIDGVEVFRREG 390 (396)
T ss_dssp ----CCEEEEEETTEEEEECC-
T ss_pred ----cceeEEEECCEEEeCCCC
Confidence 269999999999998754
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.5e-31 Score=262.78 Aligned_cols=350 Identities=18% Similarity=0.207 Sum_probs=199.7
Q ss_pred ceEEEEecEEECCCCc-eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecC-CCEEecceeecccccCCC---CCCCCCC
Q 010547 43 NQYWLTSKRIVTPKGV-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYG-EAVIMPGLIDVHAHLDDP---GRTEWEG 117 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~-~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~-g~~v~PGfID~H~H~~~~---~~~~~~~ 117 (507)
.+++|+|++|+++++. .+++|+|+||||++|++..+.. .+.++||++ |++|+|||||+|+|+..+ ...+.+.
T Consensus 3 ~~~li~~~~v~~~~~~~~~~~v~I~~g~I~~ig~~~~~~---~~~~viD~~~g~~v~PGlID~H~H~~~~~~~~~~~~e~ 79 (396)
T 2vhl_A 3 ESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKE---PYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDASFST 79 (396)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEEEETTEEEEEESSCCSS---CCSEEEECCTTCEEEECEEEEEECEETTEEGGGCSHHH
T ss_pred ccEEEEeeEEEcCCccccCceEEEECCEEEEEECCCCCC---CCCceEcCCCCCEEcCCEEEEeecCCcCccccCCCHHH
Confidence 4689999999998874 4789999999999998421111 146899999 999999999999999764 2233445
Q ss_pred hhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc-C----c--eeeEEEeccccCC-----------CcccH
Q 010547 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-R----I--YVDVGFWGGLVPE-----------NAYNA 179 (507)
Q Consensus 118 ~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~-~----~--~~~~~~~~~~~~~-----------~~~~~ 179 (507)
+...++.++++||||+++++ .+.+.......+....+.... . . ...+...+.+... .....
T Consensus 80 ~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 158 (396)
T 2vhl_A 80 LDIMSSRLPEEGTTSFLATT-ITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDV 158 (396)
T ss_dssp HHHHHHHGGGGTEEEEEEEC-CSCCHHHHHHHHHHHHHHHHHCSGGGSSSEEEEEEEECSSSCGGGCTTSCGGGCCCCCH
T ss_pred HHHHHHHHHcCCeeEEEecc-cCCCHHHHHHHHHHHHHHHhcccccccccceEEEeeecCccCccccCCCCHHHccCCCH
Confidence 66678889999999999986 332221111122333333322 2 1 2222222222110 00134
Q ss_pred HHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEE-ecCCcccchhhhhcccCcCCccccccccC
Q 010547 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV-HAEMEKGSERHVKLEDDTLDTRSYSTYLK 258 (507)
Q Consensus 180 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (507)
+.++++.+.+...++.+... .+.+ .+.++++.++++|.++.+ |+.....
T Consensus 159 ~~~~~~~~~~~~~ik~~~~~---p~~~-----~~~~~~~~a~~~g~~v~~gH~~~~~~---------------------- 208 (396)
T 2vhl_A 159 ELFKKWQQEAGGLIKIVTLA---PEED-----QHFELIRHLKDESIIASMGHTDADSA---------------------- 208 (396)
T ss_dssp HHHHHHHHHTTTCEEEEEEC---GGGS-----GGGHHHHHHHHTTCEEEECSBCCCHH----------------------
T ss_pred HHHHHHHHhcCCcceEEEEC---CCCC-----CHHHHHHHHHHCCCEEeecccCCCHH----------------------
Confidence 55666666554334432111 0011 112566778888888877 8742210
Q ss_pred CCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHH-----HHHHHHHhCCCCEEEecccccccccccCCCC
Q 010547 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL-----DLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333 (507)
Q Consensus 259 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~-----~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~ 333 (507)
.+.. +.+. |.+ ++.|+++..... ..+..... .-.+.++.++|++.++.+.+
T Consensus 209 ---------~~~~----a~~~-------G~~-~i~H~~~~~~~~~~~~~G~~~~~~~-~~~~~~e~~~h~~~l~~~~~-- 264 (396)
T 2vhl_A 209 ---------LLSD----AAKA-------GAS-HMTHLYNAMSPFHHREPGVIGTALA-HDGFVTELIADGIHSHPLAA-- 264 (396)
T ss_dssp ---------HHHH----HHHT-------TCC-EESSTTSSBCCCCSSSCHHHHHHHH-CTTCEEEEECSSSSSCHHHH--
T ss_pred ---------HHHH----HHHc-------CCC-EeEeCCccCcccccCCCCchhhhhc-CCCcEEEEcCCccccCHHHH--
Confidence 1111 1122 444 667765320000 00000000 01234444555554432211
Q ss_pred CCCceeEcCCCCChhhHHHHHHHHhcCC-eeEEeCCCCCCC--hh--------hhccccCCccccCCCCchhhhHHHHHH
Q 010547 334 GDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTV--PE--------LKLLDEGNFLKAWGGISSLQFVLPVTW 402 (507)
Q Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~l~~G~-~~~lgtD~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 402 (507)
..+.+. .|. .+.+.+|..... .. ......|.+....++..+.+..+...+
T Consensus 265 -----------------~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~d~~~~g~~~~l~~~l 325 (396)
T 2vhl_A 265 -----------------KLAFLA--KGSSKLILITDSMRAKGLKDGVYEFGGQSVTVRGRTALLSDGTLAGSILKMNEGA 325 (396)
T ss_dssp -----------------HHHHHH--HCTTSEEEECCBCTTTTSCSEEEEETTEEEEEETTEEECTTSCBCSBCCCHHHHH
T ss_pred -----------------HHHHhh--cCCccEEEECcChhhcCCCCceEEECCeEEEEECCEEEeCCCcccccccCHHHHH
Confidence 111111 133 344444432100 00 001122222222234555555566666
Q ss_pred HHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEE
Q 010547 403 SYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 480 (507)
Q Consensus 403 ~~~~~-~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 480 (507)
+.+.+ .++|++++++++|.|||++||+ +++|+|++|++|||+++|.+. .|.
T Consensus 326 ~~~~~~~~~~~~~~l~~aT~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~---------------------------~v~ 378 (396)
T 2vhl_A 326 RHMREFTNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDC---------------------------EVI 378 (396)
T ss_dssp HHHHHHHCCCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTTC---------------------------CEE
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCceeCCCCcCCEEEECCCC---------------------------cEE
Confidence 65544 6899999999999999999999 568999999999999999762 689
Q ss_pred EEEECCEEEEecCccc
Q 010547 481 ATISRGNLVYKEGNHA 496 (507)
Q Consensus 481 ~v~v~G~~v~~~g~~~ 496 (507)
.||++|++||+++++-
T Consensus 379 ~v~~~G~~v~~~~~~~ 394 (396)
T 2vhl_A 379 LTICRGNIAFISKEAD 394 (396)
T ss_dssp EEEETTEEEEECSCCC
T ss_pred EEEECCEEEEeccccc
Confidence 9999999999998874
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=252.37 Aligned_cols=344 Identities=18% Similarity=0.158 Sum_probs=205.4
Q ss_pred EEEEecEEECCCCce-eeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC----CCCCCChh
Q 010547 45 YWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG----RTEWEGFP 119 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~-~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~----~~~~~~~~ 119 (507)
++|+|++|+++++.. +++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+..+. ..+.+++.
T Consensus 5 ~~i~n~~i~~~~~~~~~~~i~I~dG~I~~i~~~~~~~---~~~~viD~~G~~v~PGfID~HvHg~~G~~~~d~~~~e~l~ 81 (381)
T 3iv8_A 5 YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLP---SEMNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAETID 81 (381)
T ss_dssp EEEEEEEEECSSCEESSEEEEEETTEEEEEEEGGGSC---TTCEEEEEEEEEEEECEEEEEECEETTEETTTSCSHHHHH
T ss_pred EEEEccEEEcCCCeEeccEEEEECCEEEEEeCCCCCC---CCCeEEECCCCEEccCeEeeeecccCCCCCCCCCCHHHHH
Confidence 699999999998854 679999999999999865433 2678999999999999999999987542 12445678
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc--CceeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcc
Q 010547 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFM 197 (507)
Q Consensus 120 ~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 197 (507)
...+.++++|||+++..+ .+.|.......+....+..+. .....++..+++.... +.|+...
T Consensus 82 ~~~~a~~~~GvTt~l~t~-~T~~~e~l~~al~~~~~~~~~~~~~ilGiHlEGPfis~~-----------~~Ga~~~---- 145 (381)
T 3iv8_A 82 TMHKANLKSGCTSFLPTL-ITSSDENMRQAIAAAREYQAKYPNQSLGLHLEGPYLNVM-----------KKGIHSV---- 145 (381)
T ss_dssp HHHHHHHHTTEEEEEEEE-ESCCHHHHHHHHHHHHHHHHHCSSSBCCEEEECSSCCGG-----------GCTTSCT----
T ss_pred HHHHHHHhCCcccccccc-CCCCHHHHHHHHHHHHHHHhcCCCceeEeeccCcccCHh-----------hcCCCCH----
Confidence 888999999999999876 444432223333333333222 2234445544443321 1222111
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHH
Q 010547 198 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 277 (507)
.....++.++++++.+.+. .+++.+.+. +... .++++.+.
T Consensus 146 -----~~i~~p~~~~~~~~~~~~~--~i~~vTlAP-----------------------------E~~~----~~~i~~l~ 185 (381)
T 3iv8_A 146 -----DFIRPSDDTMIDTICANSD--VIAKVTLAP-----------------------------ENNK----PEHIEKLV 185 (381)
T ss_dssp -----TTCCCCCHHHHHHHHHTTT--SEEEEEECC-----------------------------TTSC----HHHHHHHH
T ss_pred -----HHcCCCCHHHHHHHHhccC--CeEEEEECC-----------------------------CCCc----HHHHHHHH
Confidence 1222356666666654321 333333331 1000 23333333
Q ss_pred hhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCC------------Cce-eEcCCC
Q 010547 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD------------TRF-KCAPPI 344 (507)
Q Consensus 278 ~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~------------~~~-~~~p~~ 344 (507)
+. |..+.+.|... +.++...+.+.|.... .|+......+.... ... .++..+
T Consensus 186 ~~-------gi~vs~GHs~A---~~e~~~~a~~~Ga~~~-----THlfNaM~~~~hR~PG~vga~l~~~~~~~elI~DG~ 250 (381)
T 3iv8_A 186 KA-------GIVVSIGHTNA---TYSEARKSFESGITFA-----THLFNAMTPMVGREPGVVGAIYDTPEVYAGIIADGF 250 (381)
T ss_dssp HT-------TCEEEECSBCC---CHHHHHHHHHTTCCEE-----SSTTSSBCCCBTTBCHHHHHHHHCTTCEEEEECSSS
T ss_pred HC-------CCEEEecCCCC---CHHHHHHHHHcCCCEe-----eeCCCCCCCccCCCCchHHHHhcCCCcEEEEEcCCc
Confidence 33 66677777543 3445555666666532 23333333222111 000 111111
Q ss_pred C-ChhhHHHHHHHHhcCCeeEEeCCCCCCChhh--h--------ccccCCccccCCCCchhhhHHHHHHHHHHh-cCCCH
Q 010547 345 R-DAANKEKLWEALMDGHIDMLSSDHSPTVPEL--K--------LLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTL 412 (507)
Q Consensus 345 ~-~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gls~ 412 (507)
+ .......+.+.. |-.+.+-||........ . .+..|......+.++|....|...++.+.+ .++++
T Consensus 251 Hv~p~~~~~~~~~~--g~~~~lvTDam~a~G~~dg~y~lgg~~v~v~~g~~~l~~g~lAGs~l~l~~~v~~~v~~~g~~~ 328 (381)
T 3iv8_A 251 HVDYANIRIAHKIK--GEKLVLVTDATAPAGAEMDYFIFVGKKVYYRDGKCVDENGTLGGSALTMIEAVQNTVEHVGIAL 328 (381)
T ss_dssp SSCHHHHHHHHHHH--GGGEEEECCBCTTTTSCCSEEESSSCEEEEETTEEECTTCCBCSBCCCHHHHHHHHHHTTCCCH
T ss_pred cCCHHHHHHHHHhc--CCEEEEEeCcccccCCCCCeeecCCeEEEEECCEEEcCCCCccChhhhHHHHHHHHHHhhCCCH
Confidence 1 122223333443 36677889976532111 0 111222222334555555556666665544 58999
Q ss_pred HHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEe
Q 010547 413 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491 (507)
Q Consensus 413 ~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~ 491 (507)
++|++++|.|||+++|+ +++|+|++||.||||++|.+. .|..||++|++||+
T Consensus 329 ~~al~~aT~~pA~~lg~~~~~G~i~~G~~ADlvvld~~~---------------------------~v~~t~~~G~~v~~ 381 (381)
T 3iv8_A 329 DEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRDF---------------------------NVKATVVNGQYEQN 381 (381)
T ss_dssp HHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTTC---------------------------CEEEEEETTEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceECCCCcCCEEEECCCC---------------------------CEEEEEECCEEeeC
Confidence 99999999999999999 557999999999999999541 68999999999984
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=281.70 Aligned_cols=174 Identities=22% Similarity=0.275 Sum_probs=125.4
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC---------CCCCCCcEEecCCCEEecceeecccccCCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP---------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~---------~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~ 112 (507)
..|++|+|++|+|++++.++||.|+||||++||+...+. ..+.++++||++|++|+|||||+|+|+..+
T Consensus 336 ~~DLVItNA~IVD~tGi~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl~~P-- 413 (840)
T 4gy7_A 336 SLDTVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICP-- 413 (840)
T ss_dssp SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred cCCEEEeCeEEECCCCeEEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCCCCC--
Confidence 568999999999999999999999999999999753211 112478999999999999999999998653
Q ss_pred CCCCChhHHHHHHHhCCceEEEeCCCCCC------CCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHH
Q 010547 113 TEWEGFPSGTKAAAAGGITTLIDMPLNSD------PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL 186 (507)
Q Consensus 113 ~~~~~~~~~~~~~l~~GvTt~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (507)
.....++..|+||++...++.. ................ ....+++....... ....+.+.++.
T Consensus 414 -------~~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~a~-~~~~vn~g~~~~~~---~~~~~~L~el~ 482 (840)
T 4gy7_A 414 -------QLVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQST-DDLPLNFGFTGKGS---SSKPDELHEII 482 (840)
T ss_dssp -------HHHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHHHHT-TTSSSEEEEEEECC---CSSSHHHHHHH
T ss_pred -------CchHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHHhhh-hcceeEEEEeCCCC---cccHHHHHHhh
Confidence 2345678899999998642111 0112233333333322 33445555543322 23346677888
Q ss_pred HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcc
Q 010547 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (507)
Q Consensus 187 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 235 (507)
+.|+.+++.+.. +..+++.+.+.++.+++++.++.+|++...
T Consensus 483 ~aGa~g~K~~~~-------~~~t~~~i~~aL~~A~e~g~~V~ih~e~~~ 524 (840)
T 4gy7_A 483 KAGAMGLKLHED-------WGSTPAAIDNCLTIAEHHDIQINIHTDTLN 524 (840)
T ss_dssp HHTCSEEEEETT-------TCCCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred hceeeEEEeccc-------cCCCHHHHHHHHHHHHHhCCEEEEeccCcc
Confidence 899999998643 356789999999999999999999987654
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=262.98 Aligned_cols=348 Identities=17% Similarity=0.155 Sum_probs=191.8
Q ss_pred EEEEecEEECCCCc-eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCC-C------CCC
Q 010547 45 YWLTSKRIVTPKGV-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-T------EWE 116 (507)
Q Consensus 45 ~~i~n~~i~~~~~~-~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~-~------~~~ 116 (507)
++|+|++|++++++ .+++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+..+.. . +.+
T Consensus 2 ~li~~~~v~~~~~~~~~~~v~I~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~g~~~~~~~~~~~~~ 78 (382)
T 1yrr_A 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELP---PEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVE 78 (382)
T ss_dssp EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSC---TTCCEEECTTCEEEECEEEEEESEETTEESSSSTTTSSHH
T ss_pred EEEEeeEEEcCCceeeCCEEEEECCEEEEEecCCCCC---ccceeecCCCCEEccCEEEEeecccCCcCccccccCCCHH
Confidence 68999999998874 4789999999999999765332 25689999999999999999999864311 1 112
Q ss_pred ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh--cCceeeEEEeccccCC------Ccc-----cHHHHH
Q 010547 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE--KRIYVDVGFWGGLVPE------NAY-----NASALE 183 (507)
Q Consensus 117 ~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~-----~~~~~~ 183 (507)
.+...++.++++||||++++. .+.+.....+.+....+... +.........+++... .+. ..+.++
T Consensus 79 ~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 157 (382)
T 1yrr_A 79 TLEIMQKANEKSGCTNYLPTL-ITTSDELMKQGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVD 157 (382)
T ss_dssp HHHHHHHHHHHTTEEEEEEEE-ECCCHHHHHHHHHHHHHHHHHCTTSBCCEEEECSSCCCSCC-CCCSCSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEeec-CCCCHHHHHHHHHHHHHHhhccCCceeEEEEeCCcCCccccCCCCHHHccCCCHHHHH
Confidence 344567889999999999875 32221111112222222222 1112222222222111 111 124455
Q ss_pred HHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEE-ecC-CcccchhhhhcccC-cCCccc-cccccCC
Q 010547 184 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV-HAE-MEKGSERHVKLEDD-TLDTRS-YSTYLKT 259 (507)
Q Consensus 184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~-H~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 259 (507)
+.+.|...++.+. ....+.+.++++.|+++|+++.+ |+. ....+...+..... .++... .......
T Consensus 158 -~~~~~~~~ik~~~---------~~~~~~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~ 227 (382)
T 1yrr_A 158 -FLCENADVITKVT---------LAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGR 227 (382)
T ss_dssp -HHHHTTTTEEEEE---------ECGGGSCHHHHHHHHHTTCEEEECSCCCCHHHHHHHHHHTCCEESSTTTTSCCBCSS
T ss_pred -HHHhcCCCEEEEE---------ECCCCChHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHcCCCeeEECCCCCCccccC
Confidence 6666655555531 01114445789999999999998 987 34444433332110 000000 0000001
Q ss_pred CChhHHHHHHHHHHHHHHhhccCCCCCCc-eEEEEecCCh-hHHHHHHHHHHhCCCCEEEecccccccccccCCCCCC--
Q 010547 260 RPPSWEEAAIRELLTVAKDTRTDGPAEGA-HLHIVHLSDA-SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD-- 335 (507)
Q Consensus 260 ~p~~~~~~~~~~~~~l~~~~~~~~~~~g~-~~~~~h~~~~-~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~-- 335 (507)
.+. .+...++ .+ +. .-.+.|..+. +...+.+.+.. ...+.. ++.. ....+
T Consensus 228 ~~g-----~~~~~l~--~~--------~~~~~~~~h~~~~~~~~~~~~~~~~--~~~~~~--~~d~-------~~~~g~~ 281 (382)
T 1yrr_A 228 EPG-----LAGAILD--EA--------DIYCGIIADGLHVDYANIRNAKRLK--GDKLCL--VTDA-------TAPAGAN 281 (382)
T ss_dssp CCH-----HHHHHHH--CT--------TCEEEEECSSSSSCHHHHHHHHHHH--GGGEEE--ECCB-------CTTTTSC
T ss_pred Ccc-----hhhHhhc--CC--------cceeeecCcccccCHHHHHHHHHcC--CCcEEE--ECcC-------hHhcCCC
Confidence 111 1111111 00 11 1134555431 14444444433 022221 2211 11111
Q ss_pred -CceeEcCCCCChhhHHHHHHHHhcCCee-EEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCH
Q 010547 336 -TRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTL 412 (507)
Q Consensus 336 -~~~~~~p~~~~~~~~~~~~~~l~~G~~~-~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~ 412 (507)
..+... .+..+++.|+.+ +.|||... ... +...++.+. ..++|+
T Consensus 282 ~~~~~~~----------~~~~~~~~Gv~~~~~Gt~~g~------------------~~~-----~~~~~~~~~~~~g~~~ 328 (382)
T 1yrr_A 282 IEQFIFA----------GKTIYYRNGLCVDENGTLSGS------------------SLT-----MIEGVRNLVEHCGIAL 328 (382)
T ss_dssp CSEEEET----------TEEEEECSSCEECTTCCEEEB------------------CCC-----HHHHHHHHHHHHCCCH
T ss_pred CceEEEC----------CEEEEEECCEEEeCCCcCcCC------------------ccC-----HHHHHHHHHHHhCCCH
Confidence 011100 011234557654 22333210 000 222233333 579999
Q ss_pred HHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEe
Q 010547 413 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491 (507)
Q Consensus 413 ~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~ 491 (507)
+++++++|.|||++||+ +++|+|++||.||||++|.+. .|..||++|++||+
T Consensus 329 ~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~~---------------------------~v~~v~~~G~~v~~ 381 (382)
T 1yrr_A 329 DEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDF---------------------------KITKTIVNGNEVVT 381 (382)
T ss_dssp HHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTS---------------------------CEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCCCCCCCEEEECCCC---------------------------CEEEEEECCEEEEe
Confidence 99999999999999999 568999999999999999662 68999999999997
Q ss_pred c
Q 010547 492 E 492 (507)
Q Consensus 492 ~ 492 (507)
+
T Consensus 382 ~ 382 (382)
T 1yrr_A 382 Q 382 (382)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=261.38 Aligned_cols=359 Identities=16% Similarity=0.086 Sum_probs=202.4
Q ss_pred cceEEEEecEEECCCC-ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC------
Q 010547 42 YNQYWLTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------ 114 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~-~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~------ 114 (507)
+++++++|+.+. ++ +.+++|+|+||||++|++..+ .++||++|++|+|||||+|+|+.......
T Consensus 11 m~~l~~~~~~~~--~~~~~~~~v~I~~g~I~~Ig~~~~-------~~~iD~~g~~v~PGlID~H~H~~~~~~rg~~~~~~ 81 (458)
T 4f0l_A 11 QHFIHARQALLP--DGWAENVRIGIAGGVICSIETGVL-------AGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRG 81 (458)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEETTEEEEEECSCC-------CCTTCEEEEEEEECEEEEEECGGGGGGTTSSCBCC
T ss_pred hhHhhhcceecc--CccccCceEEEECCEEEEEeCCCc-------cccccCCCCEEccCceecccchhhhhhcccccccc
Confidence 456788888773 44 468999999999999998743 35689999999999999999995321100
Q ss_pred --CCC-------------------h----hHHHHHHHhCCceEEEeCCC-----CCCCCCCCHHHHHHHHHHHhc---Cc
Q 010547 115 --WEG-------------------F----PSGTKAAAAGGITTLIDMPL-----NSDPSTISTETLKLKVDAAEK---RI 161 (507)
Q Consensus 115 --~~~-------------------~----~~~~~~~l~~GvTt~~~~~~-----~~~p~~~~~~~~~~~~~~~~~---~~ 161 (507)
... + .....+++++||||+.++.. +..+.....+......++... +.
T Consensus 82 ~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~g~r~ 161 (458)
T 4f0l_A 82 PSADSFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGL 161 (458)
T ss_dssp SCSSTTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEE
T ss_pred cCCCcHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHHHHcCCeE
Confidence 011 1 12234578999999998521 111222223333333333332 22
Q ss_pred eeeEEEec-----cccCCC---------cccHHHHHHHHH----cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhc
Q 010547 162 YVDVGFWG-----GLVPEN---------AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 223 (507)
Q Consensus 162 ~~~~~~~~-----~~~~~~---------~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 223 (507)
........ +..+.. ....+.++++.+ .+...+. +.+ ...+..+++.++++++.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~~a~-- 234 (458)
T 4f0l_A 162 TLLPVFYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLG--VAP---HSLRAVTPDELDSVTQLLP-- 234 (458)
T ss_dssp EEEEEECCEEETTTEECCGGGTTTCCCHHHHHHHHHHHHHHHTTCTTCEEC--BEE---CBTTTSCHHHHHHHTTSST--
T ss_pred EEecchhccccccccCCchhhhhhhcCHHHHHHHHHHHHHHhccCCceEEE--Eec---CCcCcCCHHHHHHHHHHhc--
Confidence 11111110 111110 111222233322 1222221 111 3334678999999999888
Q ss_pred CCcEEEecCCcc-cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHH
Q 010547 224 KRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 302 (507)
Q Consensus 224 ~~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~ 302 (507)
+.++.+|+.+.. .+.......+ . ..+..+.+... .+.+..+.|+... ..
T Consensus 235 g~~v~~H~~e~~~~~~~~~~~~g-------------~-------~~~~~l~~~g~--------l~~~~~~~H~~~~--~~ 284 (458)
T 4f0l_A 235 DAPVHIHVAEQVKEVEDCIAWSG-------------K-------RPVEWLLDHQD--------VTARWCLIHATHM--SD 284 (458)
T ss_dssp TSCEEEEESCSHHHHHHHHHHHS-------------S-------CHHHHHHHHSC--------CCTTEEEEECCSC--CH
T ss_pred CCCEEEEeCCCHHHHHHHHHHhC-------------C-------CHHHHHHHcCC--------CCCCeEEEEeccC--CH
Confidence 999999985432 2111111000 0 00111121111 1556777888753 33
Q ss_pred HHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccC
Q 010547 303 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 382 (507)
Q Consensus 303 ~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~ 382 (507)
+.++.+++.|+.+. +||..-... +. ...++.++++.|+++++|||.....
T Consensus 285 ~~~~~l~~~g~~~~--~~p~s~~~l-------~~------------~~~~~~~~~~~Gv~v~lgtD~~~~~--------- 334 (458)
T 4f0l_A 285 EETKHMAKAGAIAG--LCPVTEANL-------GD------------GTFNATEFAAAGGKFGIGSDSNVLI--------- 334 (458)
T ss_dssp HHHHHHHHHTCEEE--ECHHHHHHT-------TC------------CCCCHHHHHHTTCEEEECCBTTSSC---------
T ss_pred HHHHHHHHcCCeEE--ECccccccc-------cC------------CCccHHHHHHCCCeEEEECCCCCCC---------
Confidence 45666666676543 465321110 00 0113467788999999999943210
Q ss_pred CccccCCCCchhhh-HHHHHHHHHH---------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCce
Q 010547 383 NFLKAWGGISSLQF-VLPVTWSYGR---------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEF 452 (507)
Q Consensus 383 ~~~~~~~~~~~~~~-~l~~~~~~~~---------~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~ 452 (507)
..++. .......... ..+++++++++++|.|||++||+ ++|+|++||.|||||+|.+.++
T Consensus 335 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~lg~-~~G~l~~G~~ADlvv~d~~~~~ 404 (458)
T 4f0l_A 335 ---------GIGDELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR-PEDGLKKGASADFVSLDVERLP 404 (458)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHHTTC-TTCSSSTTSBCCEEEEECTTST
T ss_pred ---------CHHHHHHHHHHHHhhhccCccccCCcccCCHHHHHHHHHHHHHHHhCC-CCCcCCCCCcCCEEEEeCCCCc
Confidence 11111 1111111111 12589999999999999999999 5899999999999999987643
Q ss_pred EeCCCCCcccCCCCCccccCcEEe--eEEEEEEECCEEEEecCccc
Q 010547 453 ELDNDHPVHMKHPSISAYLGRRLS--GKVLATISRGNLVYKEGNHA 496 (507)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~--~~V~~v~v~G~~v~~~g~~~ 496 (507)
..+ . .+++..+... +.|..|||+|++||++|+++
T Consensus 405 ~~~---------~-~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~ 440 (458)
T 4f0l_A 405 HAK---------G-DVVLDGWIFAGRAHVCDVWVRGVKQVEGGRHR 440 (458)
T ss_dssp TCC---------H-HHHHHHHHHTSCCEEEEEEETTEEEEETTEET
T ss_pred cCC---------c-ccHHHhCeEcCCCCceEEEECCEEEEECCEeC
Confidence 221 1 2222211111 17999999999999999985
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=253.69 Aligned_cols=356 Identities=18% Similarity=0.128 Sum_probs=189.4
Q ss_pred ceEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCC--
Q 010547 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG-- 117 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~-- 117 (507)
..++|+|+||+|+.. +.+++|+|+||||++||+..+.. ++++++||++|++|+|||||+|+|+..........
T Consensus 2 ~~~aI~narviD~~~g~~i~~~~V~I~dG~I~~Ig~~~~~~--~~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~ 79 (403)
T 3mtw_A 2 EIKAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAV--PAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSL 79 (403)
T ss_dssp CEEEEEEEEEEETTTTEEEESEEEEEETTEEEEEEETTCCC--CTTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGGGG
T ss_pred CcEEEEceEEEECCCCcEecCcEEEEECCEEEEEeCCCCCC--CCCCEEEECCCCEEEeChheeeeCCccccccCccccc
Confidence 357999999999854 45799999999999999876542 13789999999999999999999987654432211
Q ss_pred -----h-----hHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEE------eccccCC-------
Q 010547 118 -----F-----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF------WGGLVPE------- 174 (507)
Q Consensus 118 -----~-----~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------- 174 (507)
. .......+..++++..+.. .......................... .......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (403)
T 3mtw_A 80 EYSDRFWSVVQTANAKKTLEAGFTTVRNVG----AADYDDVGLREAIDAGYVPGPRIVTAAISFGATGGHCDSTFFPPSM 155 (403)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTEEEEEECC----CSTTHHHHHHHHHHTTSSCCCEEEECCSCEESTTSTTSCCSSCGGG
T ss_pred cccHHHHhhhhhhhhhhccccccceeeccc----cccccchhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 0 0122345688999988764 11111111111111111111111100 0000000
Q ss_pred ------Ccc----cHHHHHHHHHcCCcEEEEccc-----CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchh
Q 010547 175 ------NAY----NASALEALLNAGVLGLKSFMC-----PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239 (507)
Q Consensus 175 ------~~~----~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~ 239 (507)
... ...........+......... ............+++.++++.+++.+.++..|.........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 235 (403)
T 3mtw_A 156 DQKNPFNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIRE 235 (403)
T ss_dssp CCCCTTCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHH
T ss_pred ccccccccchhHHHhhhhHhhhhhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHHcCCeEEEEeccchhHHH
Confidence 000 112233334455544444321 11112334567889999999999999999999855432111
Q ss_pred hhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEec
Q 010547 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (507)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~ 319 (507)
...... ... ....... . ......... . ....+... ............+... ..
T Consensus 236 ~~~~~~-----~~~-~~~~~~~--~-----~~~~~~~~~--------~--~~~~~~~~--~~~~~~~~~~~~~~~~--~~ 288 (403)
T 3mtw_A 236 AVRAGV-----DTI-EHASLVD--D-----EGIKLAVQK--------G--AYFSMDIY--NTDYTQAEGKKNGVLE--DN 288 (403)
T ss_dssp HHHTTC-----SEE-EECTTCC--H-----HHHHHHHHH--------T--CEEECCCS--THHHHHHHHHHHTCCH--HH
T ss_pred HHHhcc-----ccc-ccccccc--c-----chhhhhccc--------c--ceeeeeec--cchhhhhhhhccccch--hh
Confidence 111000 000 0000000 0 000000000 0 00111111 0011111111111000 00
Q ss_pred ccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHH
Q 010547 320 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 399 (507)
++.. . .............++.|+.+.+|||........ +.
T Consensus 289 ~~~~----------------~---~~~~~~~~~~~~~~~~g~~~~~gt~~~~~~~~~---------------------~~ 328 (403)
T 3mtw_A 289 LRKD----------------R---DIGELQRENFRKALKAGVKMVYGTDAGIYPHGD---------------------NA 328 (403)
T ss_dssp HHHH----------------H---HHHHHHHHHHHHHHHHTCEEECCCCBTTBCTTC---------------------GG
T ss_pred cccc----------------c---cccccccchhhHHHhcCCeEeeccCCcccccch---------------------HH
Confidence 0000 0 001112233456677899999999976443221 11
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeE
Q 010547 400 VTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 478 (507)
Q Consensus 400 ~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
..+....+.|+|++|+++++|.|||++||+ +++|+|++||+|||||||.|+..++ ....+
T Consensus 329 ~~~~~~~~~gls~~eal~~~T~npA~~lgl~~~~GsI~~G~~ADlvvld~dPl~di-------------------~~~~~ 389 (403)
T 3mtw_A 329 KQFAVMVRYGATPLQAIQSATLTAAEALGRSKDVGQVAVGRYGDMIAVAGDPLADV-------------------TTLEK 389 (403)
T ss_dssp GHHHHHHHTTCCHHHHHHHTTHHHHHHHTCTTTSSSCCTTSBCCEEEESSCTTTCG-------------------GGGGS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcceEEEECCChhHhH-------------------hhhcC
Confidence 123345678999999999999999999999 6789999999999999997753221 11135
Q ss_pred EEEEEECCEEEE
Q 010547 479 VLATISRGNLVY 490 (507)
Q Consensus 479 V~~v~v~G~~v~ 490 (507)
|..||++||+|.
T Consensus 390 v~~Vi~~G~vvk 401 (403)
T 3mtw_A 390 PVFVMKGGAVVK 401 (403)
T ss_dssp CSEEEETTEEEE
T ss_pred cCEEEECCEEEe
Confidence 889999999764
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=260.10 Aligned_cols=360 Identities=17% Similarity=0.156 Sum_probs=206.5
Q ss_pred EEEecEEECCCCc-eeeeEEE-eCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCC---------
Q 010547 46 WLTSKRIVTPKGV-ISGAVEI-KEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------- 114 (507)
Q Consensus 46 ~i~n~~i~~~~~~-~~~~I~I-~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~--------- 114 (507)
.+..++++.++++ .+++|.| +||+|++|++..+. .+++|++| +|+|||||+|+|+.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~i~~~g~I~~ig~~~~~------~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~~~~~ 75 (453)
T 3mdu_A 3 AIFAERALLPEGWARNVRFEISADGVLAEIRPDANA------DGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVAGNPN 75 (453)
T ss_dssp EEEEEEEEETTEEEEEEEEEECTTSBEEEEESSCCC------TTSEECSS-CEEECEEEEEECGGGGGGTTTTCCCSSTT
T ss_pred ccchhheecCCceecCeEEEEecCCEEEEecCCCCc------ccccccCC-cccccceecccchHHHhhccccccccCCC
Confidence 3557788888885 5899999 89999999987542 24679999 99999999999985321110
Q ss_pred -----C-------------CChh----HHHHHHHhCCceEEEeCCC-C----CCCCCCCHHHHHHHHHHHhc-CceeeEE
Q 010547 115 -----W-------------EGFP----SGTKAAAAGGITTLIDMPL-N----SDPSTISTETLKLKVDAAEK-RIYVDVG 166 (507)
Q Consensus 115 -----~-------------~~~~----~~~~~~l~~GvTt~~~~~~-~----~~p~~~~~~~~~~~~~~~~~-~~~~~~~ 166 (507)
| +.+. ....+++++||||+.++.. . ..+.....+......+++.. +....+.
T Consensus 76 ~~l~~wl~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~Gir~~~~ 155 (453)
T 3mdu_A 76 DSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLL 155 (453)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHhCCeEEEe
Confidence 0 1111 1234578999999998531 1 11122223333444444332 1111111
Q ss_pred E----eccccCCC------------cccHHHHHHHH----HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 010547 167 F----WGGLVPEN------------AYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226 (507)
Q Consensus 167 ~----~~~~~~~~------------~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 226 (507)
. ..++.... ....+.++++. ..+. .+. +.+ ......++++++++++.|+ .|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~p---~~~~~~~~e~l~~~~~~A~-~g~~ 228 (453)
T 3mdu_A 156 PVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGH-SLG--LCF---HSLRAVTPQQIATVLAAGH-DDLP 228 (453)
T ss_dssp ECBCCBSSTTTCBCCGGGGGGCCCHHHHHHHHHHHHHHHHHHTC-EEC--EEE---EETTTSCHHHHHHHHTSSC-TTSC
T ss_pred cchhccccccCCCCchhhhhccCCHHHHHHHHHHHHHHhhcCCC-eEE--Eec---CCCCcCCHHHHHHHHHHHh-cCCC
Confidence 1 11111010 01112222222 1222 221 111 2234679999999999999 9999
Q ss_pred EEEecCC-cccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHH
Q 010547 227 LLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL 305 (507)
Q Consensus 227 v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i 305 (507)
+.+|+.+ ...+.......+ ...++.+.+.. ..+.+..+.|+... ..+.+
T Consensus 229 v~~H~~e~~~e~~~~~~~~g--------------------~~~v~~l~~~g--------~~~~~~~~~H~~~~--~~~~i 278 (453)
T 3mdu_A 229 VHIHIAEQQKEVDDCQAWSG--------------------RRPLQWLYENV--------AVDQRWCLVHATHA--DPAEV 278 (453)
T ss_dssp EEEEESCSHHHHHHHHHHHS--------------------SCHHHHHHHHS--------CCCTTEEEEECCSC--CHHHH
T ss_pred EEEEeCCCHHHHHHHHHHhC--------------------CCHHHHHHHcC--------CCCCCeEEEEcCCC--CHHHH
Confidence 9999743 322221111100 00112222221 11556778888763 34456
Q ss_pred HHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC-ChhhhccccCCc
Q 010547 306 MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT-VPELKLLDEGNF 384 (507)
Q Consensus 306 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~-~~~~~~~~~~~~ 384 (507)
+.+++.|+.+. +||...... +. ...++.++++.|+.+++|||.... ++...
T Consensus 279 ~~la~~g~~v~--~~P~sn~~l-------g~------------g~~p~~~~~~~Gv~v~lgtD~~~~~~~~~~------- 330 (453)
T 3mdu_A 279 AAMARSGAVAG--LCLSTEANL-------GD------------GIFPATDFLAQGGRLGIGSDSHVSLSVVEE------- 330 (453)
T ss_dssp HHHHHHTCEEE--ECHHHHHHT-------TC------------CCCCHHHHHHTTCEEEECCBTCSCCCHHHH-------
T ss_pred HHHHHcCCEEE--ECchhHhhc-------CC------------CCCCHHHHHHCCCEEEEECCCCCCCCHHHH-------
Confidence 66667776544 466321110 00 011345778899999999995422 11110
Q ss_pred cccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEe
Q 010547 385 LKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 454 (507)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~~----------~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~ 454 (507)
........... +.+++++++++++|.|||+++|+ ++|+|++|+.|||+++|.+.++..
T Consensus 331 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~-~~G~l~~G~~AD~~~~d~~~~~~~ 398 (453)
T 3mdu_A 331 -----------LRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQ-PIGSLAVGRRADLLVLDGNDPYLA 398 (453)
T ss_dssp -----------HHHHHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHTS-SCSSCCTTSBCCEEEECTTCHHHH
T ss_pred -----------HHHHHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhCC-CCCccCCCCcCCEEEEeCCCcccc
Confidence 00111111111 12789999999999999999999 789999999999999998754322
Q ss_pred CCCCCcccCCCCCccccCcEEe---eEEEEEEECCEEEEecCcccC
Q 010547 455 DNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAP 497 (507)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G~~v~~~g~~~~ 497 (507)
+ ... .+++..+... +.|..|||+|++||++|++++
T Consensus 399 ~-------~~~-~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 436 (453)
T 3mdu_A 399 S-------AEG-DALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAG 436 (453)
T ss_dssp T-------CCH-HHHHHHHHHHCCGGGEEEEEETTEEEEBTTBCTT
T ss_pred C-------CCc-cChHHHheeeCCCCCeeEEEECCEEEEECCccCC
Confidence 1 011 3333322222 469999999999999999863
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-30 Score=259.48 Aligned_cols=342 Identities=15% Similarity=0.098 Sum_probs=185.8
Q ss_pred CCcceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC------
Q 010547 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG------ 111 (507)
Q Consensus 40 ~~~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~------ 111 (507)
.++.+++|+|++|+++++ +.+++|+|+||||++|++..+.+..+.+.++||++ ++|+|||||+|+|+....
T Consensus 34 ~~~~~~li~n~~v~~~~~~~~~~~~V~I~~g~I~~vg~~~~~~~~~~~~~viD~~-~~v~PGlID~H~H~~~~~~~g~~~ 112 (420)
T 2imr_A 34 DAHTPRLLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAG-AVIAPPPVNAHTHLDMSAYEFQAL 112 (420)
T ss_dssp --CCEEEEEESEEECC---EESSEEEEEETTEEEEEECHHHHHHHCTTCEEEECC-SEESSCCCEEEEESSCCHHHHHHC
T ss_pred cccccEEEECCEEEeCCCCeeeccEEEEECCEEEEecCcccccccCCCCeeecCC-eEECCCCEecCcCcchhhhhhccC
Confidence 345679999999999874 35789999999999999753321001256899999 999999999999997641
Q ss_pred -CCCC--------------CChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc
Q 010547 112 -RTEW--------------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 176 (507)
Q Consensus 112 -~~~~--------------~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (507)
...| .......+.++++||||+++++ . ..+.+.. ...... +......++....+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~~~~~---~~~~~g-~r~~~~~~~~~~~~ 181 (420)
T 2imr_A 113 PYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIV-W------APEVMDA---LLARED-LSGTLYFEVLNPFP 181 (420)
T ss_dssp HHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEE-C------SHHHHHH---HHTCTT-CCEEEEEEECBCCG
T ss_pred CHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCcEEEEEcc-C------CHHHHHH---HHHhcC-cEEEEEeeecCCCc
Confidence 1111 1123345678999999999875 2 1233322 122211 11111111211111
Q ss_pred c----cHH----HHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCc-ccchhhhhcccCc
Q 010547 177 Y----NAS----ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDT 247 (507)
Q Consensus 177 ~----~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~-~~~~~~~~~~~~~ 247 (507)
. ..+ .++.+...+...++.++.+ ...+..+++.++++++.|+++|+++.+|+.+. ..+.......+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~ 258 (420)
T 2imr_A 182 DKADEVFAAARTHLERWRRLERPGLRLGLSP---HTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPL 258 (420)
T ss_dssp GGHHHHHHHHHHHHHHHHTTCBTTEEEEEEE---CCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHHSCSTT
T ss_pred hhhHHHHHHHHHHHHHHhcccCCceEEEecC---CcCCCcCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHhhccc
Confidence 1 112 2333333222223444333 22345789999999999999999999999643 3333222211000
Q ss_pred -------CCcccc--ccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEe
Q 010547 248 -------LDTRSY--STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318 (507)
Q Consensus 248 -------~~~~~~--~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~ 318 (507)
...... ..+....+... .++...+... . +.+..+.|+.+- ..+.++.+++.|+. +.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~-l-------~~~~~i~H~~~l--~~~~i~~l~~~g~~--~~ 323 (420)
T 2imr_A 259 WDNRMPALYPHTLAEVIGREPGPDLT---PVRYLDELGV-L-------AARPTLVHMVNV--TPDDIARVARAGCA--VV 323 (420)
T ss_dssp GGGSCGGGSCSSHHHHHTSCCCTTCC---HHHHHHHHTC-G-------GGCCEEEECCSC--CHHHHHHHHHHTCC--EE
T ss_pred cccccccchhhhhhhhccccccCCCC---HHHHHHHcCC-C-------CCCeEEEecCcC--CHHHHHHHHHcCCe--EE
Confidence 000000 00000011100 1111111110 0 122334444432 11234445555654 44
Q ss_pred cccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHH
Q 010547 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398 (507)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 398 (507)
+||+.... + + ...| .+.+++++|+++++|||+.+..... .. +
T Consensus 324 ~~p~~~~~----~---~---~~~~---------~l~~~~~~Gv~~~lgtD~~~~~~~~---------------~~----~ 365 (420)
T 2imr_A 324 TCPRSNHH----L---E---CGTF---------DWPAFAAAGVEVALGTDSVASGETL---------------NV----R 365 (420)
T ss_dssp ECHHHHHH----T---T---CCCC---------CHHHHHHTTCCEEECCCCHHHHSCS---------------CT----H
T ss_pred ECHHHHHH----h---c---cCCC---------CHHHHHHCCCeEEEECCCCccCCCC---------------CH----H
Confidence 57753211 0 0 0122 2346788999999999975321110 00 1
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCC
Q 010547 399 PVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA 450 (507)
Q Consensus 399 ~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~ 450 (507)
..+..... ..++|++++++++|.|||++||+ +++|+|++||.||| |+|+++
T Consensus 366 ~~~~~~~~~~~~ls~~~al~~aT~n~A~~lgl~~~~GsL~~Gk~ADl-vvd~~~ 418 (420)
T 2imr_A 366 EEVTFARQLYPGLDPRVLVRAAVKGGQRVVGGRTPFLRRGETWQEGF-RWELSR 418 (420)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHC--CCCCSTTSBCCGGG-BGGGCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCE-EEECCC
Confidence 11111112 25899999999999999999999 56899999999999 788663
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=242.14 Aligned_cols=94 Identities=21% Similarity=0.269 Sum_probs=69.3
Q ss_pred CcceEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCC--
Q 010547 41 PYNQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW-- 115 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~-- 115 (507)
++.+++|+|++|+|+++ +.+++|+|+||||++|++....+ +++++||++|++|+|||||+|+|+........
T Consensus 2 sM~~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~~~~~---~~~~vID~~G~~v~PGfID~H~H~~~~~~~~~~~ 78 (426)
T 3mkv_A 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKS---SNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRV 78 (426)
T ss_dssp -CCEEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESSCCCC---SSCEEEECTTCEEEECEEEEEECTTCCSSCHHHH
T ss_pred CcCcEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCCCCCC---CCCEEEECCCCEEEeChhhhhhCcccccCCcccc
Confidence 46789999999999875 35789999999999999876544 37899999999999999999999876533211
Q ss_pred ---CChh------HHHHHHHhCCceEEEeCC
Q 010547 116 ---EGFP------SGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 116 ---~~~~------~~~~~~l~~GvTt~~~~~ 137 (507)
.... .........++|+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (426)
T 3mkv_A 79 ATLPNVLVTLRAVPIMRAMLRRGFTTVRDAG 109 (426)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTEEEEEECS
T ss_pred cccchhHHHHHHHhhhhhhhccccccccccc
Confidence 1111 112334567777777543
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-31 Score=280.89 Aligned_cols=379 Identities=18% Similarity=0.174 Sum_probs=204.7
Q ss_pred CCCCcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCC-------CCCCCCcEEecCCCEEecceeecccccCCC
Q 010547 38 SLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWP-------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (507)
Q Consensus 38 ~~~~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~-------~~~~~~~viD~~g~~v~PGfID~H~H~~~~ 110 (507)
......|++|+|++|+|++++.++||+|+||||++||+..++. ..+.++++||++|++|+|||||+|+|+..+
T Consensus 60 ~~~~~~DlvI~Na~Ivd~~Gi~kaDIlIkDGrIaaIG~ag~pd~~d~vdl~~~~g~eVIDA~GkiV~PG~ID~HvH~~~~ 139 (566)
T 4ep8_C 60 LAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICP 139 (566)
T ss_dssp CGGGSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECEEEEEEECSCT
T ss_pred CCCCCCCEEEECcEEECCCCeEEeEEEEECCEEEEeecCCCcccccccccccCCCCEEEECCCCEEEcCEEEecccccCC
Confidence 3345779999999999999999999999999999999753321 112478999999999999999999998875
Q ss_pred CCCCCCChhHHHHHHHhCCceEEEeCCCCCC-----CCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHH
Q 010547 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSD-----PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEAL 185 (507)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (507)
... ......+.++.......+. .....................+++..+++..... ......+
T Consensus 140 ~~~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~ 207 (566)
T 4ep8_C 140 QQA---------EEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQ---PDALREQ 207 (566)
T ss_dssp THH---------HHHHHHTEEEEEEECSSSSHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSC---HHHHHHH
T ss_pred Ccc---------chhhhhhHHHHhhCceEEEEecCCCCCchHHHHHHHHHHhccccceeeeeeccccccc---chhhHHH
Confidence 321 2223344554443210000 1112222223333334445566776665554443 3455666
Q ss_pred HHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccch---hhhhcccCcCCccccccccCCCCh
Q 010547 186 LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE---RHVKLEDDTLDTRSYSTYLKTRPP 262 (507)
Q Consensus 186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ 262 (507)
...++.+++.+..+ ......+......+.........|.+...... ....... ......+....+.
T Consensus 208 ~~a~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~e~~~~~~~----~~~~~~~~~~~~~ 276 (566)
T 4ep8_C 208 VAAGVIGLKIHEDW-------GATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIG----GRTIHTFHTEGAG 276 (566)
T ss_dssp HHHTCSEEEEEGGG-------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHT----TCCEEETTTTSTT
T ss_pred hhhccccccccccc-------cccchhhhhHhHHHHHhcchhhhhhhhHHHHHHHHhhHhhcc----Cccccccccccch
Confidence 67788888875432 45667778888888889999999976544321 1111100 0001111111111
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcC
Q 010547 263 SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAP 342 (507)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p 342 (507)
......+.+........ ....+..|.... ...+..... ....|++.++..... ......
T Consensus 277 ~~~~~~~~~~~~~a~~~-------~~~~~~~~~~~~-~~~~e~~~~---------~~~~h~l~~~~~~~~---~~~~~~- 335 (566)
T 4ep8_C 277 GGHAPDIITACAHPNIL-------PSSTNPTLPYTL-NTIDEHLDM---------LMVCHHLDPDIAEDV---AFAESR- 335 (566)
T ss_dssp SSSTTTGGGGGGCTTEE-------EEECSTTSSCBT-THHHHHHHH---------HHHHHTCCTTCHHHH---HHHHHH-
T ss_pred hHHHHHHHHHHHHHhhc-------CCceeehhHHHH-HHhhcccce---------EEEeecccCChhhHH---hhccCC-
Confidence 11111111111100000 000111111111 111111111 012333332211100 000000
Q ss_pred CCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhh
Q 010547 343 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSE 421 (507)
Q Consensus 343 ~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~ 421 (507)
. ...........+..|....+++|+.+.....+.. ...+.+.......+..++. .....+++++++++++|.
T Consensus 336 -~-~~~~~~~~~~l~~~G~~~~i~sD~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTi 408 (566)
T 4ep8_C 336 -I-RRETIAAEDVLHDLGAFSLTSSDSQAMGRVGEVI-----LRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTI 408 (566)
T ss_dssp -C-CHHHHHHHHHHHHHTSSCEECCCTTSSSCTTCHH-----HHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTH
T ss_pred -C-cccchHHHHHHHhCCCcceEeecccccccccccc-----cccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHH
Confidence 0 1222233344566799999999998765433210 0000000000000000000 012335899999999999
Q ss_pred chhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEe
Q 010547 422 RPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491 (507)
Q Consensus 422 n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~ 491 (507)
|||++||+ +++|+|++||+|||||||++. +. . ++..|+++|.+||-
T Consensus 409 NPAralGL~d~iGSIevGK~ADLVL~Dp~~---------f~-v--------------kP~~v~~~G~iv~a 455 (566)
T 4ep8_C 409 NPALTHGIAHEVGSIEVGKLADLVVWSPAF---------FG-V--------------KPATVIKGGMIAIA 455 (566)
T ss_dssp HHHHHTTCTTTSSSSCTTSBCCEEEECGGG---------TT-T--------------SCSEEEETTEEEEE
T ss_pred HHHHHhCCCCCCcCCCCCCCCCEEEECccc---------cC-C--------------CeeEEeeCCEEEEc
Confidence 99999999 788999999999999999763 11 1 45789999999994
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=248.85 Aligned_cols=330 Identities=17% Similarity=0.116 Sum_probs=203.0
Q ss_pred eEEEEecEEECCCCc--eeeeEEEeCCEEEEeecCCCCCCC--CCCCcEEecCCCEEecceeecccccCCCCC-------
Q 010547 44 QYWLTSKRIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRN--SKTGQVVDYGEAVIMPGLIDVHAHLDDPGR------- 112 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~--~~~~I~I~dG~I~~Vg~~~~~~~~--~~~~~viD~~g~~v~PGfID~H~H~~~~~~------- 112 (507)
+++|+|++|+|+++. ...+|+|+||||++||+..+.... ..+.++||++|++|+|||||+|+|+..++.
T Consensus 37 ~~li~ng~I~t~~~~~~~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~~g~~~~~~dl 116 (534)
T 3icj_A 37 MKALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMVDL 116 (534)
T ss_dssp EEEEESSEEEEEETTEEEESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHHHHHHHHSEEC
T ss_pred CEEEECCEEECCCCCCceeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhhhhhhcCccCC
Confidence 479999999998774 478999999999999986543110 126789999999999999999999732100
Q ss_pred ---C----------------------------------------------------------------------------
Q 010547 113 ---T---------------------------------------------------------------------------- 113 (507)
Q Consensus 113 ---~---------------------------------------------------------------------------- 113 (507)
.
T Consensus 117 ~~~~s~~e~~~~l~~~~~~wi~g~G~~~~~~~~~pt~~~LD~~~~Pv~l~~~~~H~~~~Ns~AL~~~gi~~t~~p~G~tG 196 (534)
T 3icj_A 117 RGVKSMEELVERVKKGRGRIIFGFGWDQDELGRWPTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDESTG 196 (534)
T ss_dssp TTCCSHHHHHHHHHTCCSSSEEEEEECHHHHSSCCCHHHHTTSSSCEEEEETTSSEEEECHHHHHHHCCCCCTTEETTTT
T ss_pred CCCCCHHHHHHHHHHHHhhCEEEcccCHHHhcCCCCHHHHhhCCCeEEEEecCCcHhHHhHHHHHHcCCCCCCCCCCCCc
Confidence 0
Q ss_pred -------------------CCC----ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh-cCceeeEEEec
Q 010547 114 -------------------EWE----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWG 169 (507)
Q Consensus 114 -------------------~~~----~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 169 (507)
+.+ .+....+.+++.|+|++.++.. ....+..+.+... +...+++..+.
T Consensus 197 ~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~-------~~~~~~~~~~l~~~g~l~~rv~~~~ 269 (534)
T 3icj_A 197 IVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSV-------GEKALKALFELEREGRLKMNVFAYL 269 (534)
T ss_dssp EEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEE-------CHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred eeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCC-------CHHHHHHHHHHHhCCCCcEEEEEec
Confidence 000 0112234567899999998741 1333333333322 33445554432
Q ss_pred cccCCCcccHHHHHHHHH-------cCCcEEEEccc----------------CCCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 010547 170 GLVPENAYNASALEALLN-------AGVLGLKSFMC----------------PSGINDFPMTNASHIKEGLSVLARYKRP 226 (507)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~a~~~~~~ 226 (507)
.. ...+.+.+... ....++|.+.. .++..+.+..++++++++++.|+++|.+
T Consensus 270 ~~-----~~~~~~~~~~~~~~~~~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~v~~A~~~G~~ 344 (534)
T 3icj_A 270 SP-----ELLDKLEELNLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLD 344 (534)
T ss_dssp CG-----GGHHHHHHHTCCSEECSSEEEEEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHHHHHHTTTTCE
T ss_pred CH-----HHHHHHHHhccccCCCCcEEEEeEEEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 11 12223322211 11345666531 1122355568999999999999999999
Q ss_pred EEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHH
Q 010547 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 306 (507)
Q Consensus 227 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~ 306 (507)
+.+|+.. ..++...++...+. +.+..+.|+.. -..+.++
T Consensus 345 v~~Ha~g--------------------------------d~ai~~~l~a~~~~-------~~r~~ieH~~~--~~~e~i~ 383 (534)
T 3icj_A 345 VAVHAIG--------------------------------DKAVDVALDAFEEA-------EFSGRIEHASL--VRDDQLE 383 (534)
T ss_dssp EEEEECS--------------------------------HHHHHHHHHHHHHH-------TCCCEEEECCB--CCHHHHH
T ss_pred EEEEEcC--------------------------------hHHHHHHHHHHHhc-------cCCCEEEECCC--CCHHHHH
Confidence 9999943 22445666666654 24567888876 3455677
Q ss_pred HHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccc
Q 010547 307 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 386 (507)
Q Consensus 307 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~ 386 (507)
.+++.|+.+.. +|.+..... .. .. ...+ .......++.++++. +++++|||........
T Consensus 384 ~la~~gv~~~~--~P~~~~~~~-~~---~~--~lg~--~r~~~~~p~~~l~~~-v~valGSD~p~~~~~p---------- 442 (534)
T 3icj_A 384 RIKELKVRISA--QPHFIVSDW-WI---VN--RVGE--ERAKWAYRLKTLSSI-TKLGFSTDSPIEPADP---------- 442 (534)
T ss_dssp HHHHHTCEEEE--CTTHHHHCT-TH---HH--HHHH--HHGGGBTCHHHHHHH-SCEEECCTTTTSCCCH----------
T ss_pred HHHHcCCeEEE--ccccccchh-HH---HH--hhCH--HHHhccHHHHHHHHh-CCEEeecCCCCCCCCH----------
Confidence 77777865543 665432210 00 00 0000 000111245678888 9999999985432110
Q ss_pred cCCCCchhhhHHHHHHH--HHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEe
Q 010547 387 AWGGISSLQFVLPVTWS--YGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 454 (507)
Q Consensus 387 ~~~~~~~~~~~l~~~~~--~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~ 454 (507)
+........+ +..+.++|++||++++|.|||+++|++++|+|++||.||||++|.|+..++
T Consensus 443 -------~~~~~~av~r~~~~~~~~ls~~eaL~~~T~~~A~~lg~e~~GsLe~Gk~ADlvvld~dpl~~~ 505 (534)
T 3icj_A 443 -------WVSIDAAVNRYVVDPGERVSREEALHLYTHGSAQVTLAEDLGKLERGFRAEYIILDRDPLKEM 505 (534)
T ss_dssp -------HHHHHHHHHCCSSCGGGCCCHHHHHHHTTHHHHHHTTCTTCSCCSTTSBCCEEEESSCTTC--
T ss_pred -------HHHHHHHHhccccCcccCCCHHHHHHHHHHHHHHHhCCCCCeEECCCCCcCEEEECCChhhcc
Confidence 0000000000 123567999999999999999999998789999999999999998865443
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=229.79 Aligned_cols=322 Identities=19% Similarity=0.198 Sum_probs=170.2
Q ss_pred CceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC-CCCCCChhHHHHHHHhCCceEEEe
Q 010547 57 GVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RTEWEGFPSGTKAAAAGGITTLID 135 (507)
Q Consensus 57 ~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~-~~~~~~~~~~~~~~l~~GvTt~~~ 135 (507)
+..+++|+|+||||++|++ + + || +|++|+|||||+|+|+..+. ... .++...++.++++||||+++
T Consensus 26 ~~~~~~V~I~~g~I~~vg~---------~-~-iD-~g~~v~PGlID~H~H~~~~~~~~~-~~l~~~~~~~l~~GvTtv~d 92 (376)
T 1o12_A 26 GEFTGDVEIEEGKIVKVEK---------R-E-CI-PRGVLMPGFVDPHIHGVVGADTMN-CDFSEMEEFLYSQGVTTFLA 92 (376)
T ss_dssp EEEEEEEEEETTEEEEEEE---------C-C-SC-CSSEEEECEEEEEECEETTEETTT-TCHHHHHHHHHTTTEEEEEE
T ss_pred cccCceEEEECCEEEEeCC---------C-c-cC-CCCEEccCeEEEeecCCCCCCCCh-hhHHHHHHHHHhCCcEEEEe
Confidence 3468999999999999986 1 4 89 99999999999999997654 222 24777889999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc-Cc--eeeEEEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHH
Q 010547 136 MPLNSDPSTISTETLKLKVDAAEK-RI--YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 212 (507)
Q Consensus 136 ~~~~~~p~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (507)
++ .+.|.....+.+....+.+.. .. ...+...+++.... ..|.. ........+.
T Consensus 93 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~g~~~~g~~~~~~-----------~~g~~---------~~~~~~~~~~-- 149 (376)
T 1o12_A 93 TT-VSTSLEKMKEILRKARDYILENPSTSLLGVHLEGPYISKE-----------KKGAH---------SEKHIRPPSE-- 149 (376)
T ss_dssp EC-CSCCHHHHHHHHHHHHHHHHHCTTCSEEEEEEECSSSCGG-----------GCTTS---------CTTTCCCCCH--
T ss_pred cc-CCCCHHHHHHHHHHHHHHhhccCCCceEEEEEEcCcCCcc-----------cCCCC---------CHHHhcCCCH--
Confidence 86 333322222223333333332 11 22222222111100 00000 0000000111
Q ss_pred HHHHHHHHHhcCC---cEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 213 IKEGLSVLARYKR---PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 213 l~~~~~~a~~~~~---~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
+..+++.. .+..+++. +. . +.++++.+. |.+
T Consensus 150 -----~~~~~~~~~~~~~~~~pe~---------------------------~~---~----~~i~~A~~~-------g~~ 183 (376)
T 1o12_A 150 -----RELSEIDSPAKMLTFAPEI---------------------------ES---S----ELLLRLVKR-------DIV 183 (376)
T ss_dssp -----HHHTTCCTTEEEEEECTTS---------------------------TT---G----GGGGGGGGG-------TCE
T ss_pred -----HHHHHhhCCeEEEEEccCC---------------------------cc---H----HHHHHHHHC-------CCE
Confidence 11222110 11111110 00 0 233444443 666
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCCEE-----Eeccccccccc--ccCCCCCCCce-eEcCCCC-ChhhHHHHHHHHhc-
Q 010547 290 LHIVHLSDASSSLDLLMEAKTNGDSIT-----VETCPHYLAFS--AEEIPDGDTRF-KCAPPIR-DAANKEKLWEALMD- 359 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~~~g~~i~-----~~~~~~~~~~~--~~~~~~~~~~~-~~~p~~~-~~~~~~~~~~~l~~- 359 (507)
+++.|+. +..+.++.+++.|.... ...+++++... ...+....... ....... .... +..+++.
T Consensus 184 v~igH~~---~~~~~i~~a~~~G~~~itH~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~p~~---~~~~~~~~ 257 (376)
T 1o12_A 184 LSAGHSI---ATFEEFMKFYKEGVKRITHFPNGLKPLHHREIGITGAGLLLDDVKLELICDGVHLSREM---VKLVYKVK 257 (376)
T ss_dssp EEECSBC---CCHHHHHHHHTTTCCEESSTTTTBCCCCSSCCHHHHHHHHCTTCEEEEECSSSSSCHHH---HHHHHHHH
T ss_pred EEeecCc---cCHHHHHHHHHCCCCeEEecccCcCChhhcccchhhhhhcCCcceEEEeCCCcCcCHHH---HHHHHhhC
Confidence 7766643 33455666666665421 11122221100 00000000000 0000011 1122 2222333
Q ss_pred CC-eeEEeCCCCCCCh--hhhc--------cccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHh
Q 010547 360 GH-IDMLSSDHSPTVP--ELKL--------LDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLA 427 (507)
Q Consensus 360 G~-~~~lgtD~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gls~~~al~~~T~n~A~~l 427 (507)
|. ..++.||...... ...+ ...|.+....++..+....+...++.+.+ .+++++++++++|.|||++|
T Consensus 258 g~~~~~~~sd~~~~~g~~~g~~~~~g~~~~~~~g~~~~~~g~~~g~~~~l~~~l~~~~~~~~~~~~~~l~~~T~~~A~~l 337 (376)
T 1o12_A 258 KANGIVLVTDSISAAGLKDGTTTLGDLVVKVKDGVPRLEDGTLAGSTLFFSQAVKNFRKFTGCSITELAKVSSYNSCVEL 337 (376)
T ss_dssp TGGGEEEECCBCTTTTSCSCEEESSSSEEEEETTEEECTTSCBCCBCCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHT
T ss_pred CCCCEEEecCchhhcCCCCeeEEECCeEEEEeCCeEEeCCCcccccccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 44 6788999753211 0000 01122322344555555556666665544 68999999999999999999
Q ss_pred CCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecC
Q 010547 428 GQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493 (507)
Q Consensus 428 gl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g 493 (507)
|+++.|+|++|+.|||+++|.+ +.|..||++|++||++|
T Consensus 338 gl~~~G~i~~G~~ADlv~~d~~---------------------------~~v~~v~~~G~~v~~~~ 376 (376)
T 1o12_A 338 GLDDRGRIAEGTRADLVLLDED---------------------------LNVVMTIKEGEVVFRSR 376 (376)
T ss_dssp TCTTSSCCSTTSBCCEEEECTT---------------------------CCEEEEEETTEEEEEC-
T ss_pred CCCCCccCCCCCcCCEEEECCC---------------------------CCEEEEEECCEEEeecC
Confidence 9954599999999999999965 16899999999999875
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=114.42 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=59.0
Q ss_pred cceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCC
Q 010547 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~ 113 (507)
+.+++|+|++|+++++ ...++|+|+||||++|++....+..+.+.++||++|++|+|||||+|+|+..+.+.
T Consensus 3 ~~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~p~~~ 76 (81)
T 3ggm_A 3 VPDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHVIRGLEH 76 (81)
T ss_dssp CCSEEEESSEEECSCTTCSEESEEEEETTEEEEEESGGGGGGCCTTCEEEECTTCEEEECCCCTTEEEECCCC-
T ss_pred cCCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCchHhcccCCCCEEEECCCCEEeeCeEeeeeCCCCcccc
Confidence 4678999999999876 45889999999999999865432222367899999999999999999999886543
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-08 Score=96.75 Aligned_cols=272 Identities=16% Similarity=0.150 Sum_probs=134.3
Q ss_pred ceeecccccCCCCCCC-----C-----CChhH----HHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceee
Q 010547 99 GLIDVHAHLDDPGRTE-----W-----EGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164 (507)
Q Consensus 99 GfID~H~H~~~~~~~~-----~-----~~~~~----~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 164 (507)
||||+|+|+....... . ++... ....+.+.|||++++.+ +.........+.+..+......+..
T Consensus 16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~--~~~~~~~~~~~~~la~~~~~~i~~~ 93 (330)
T 2ob3_A 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVS--TFDIGRDVSLLAEVSRAADVHIVAA 93 (330)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECC--CGGGTCCHHHHHHHHHHHTCEEECE
T ss_pred CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCC--CCCcCCCHHHHHHHHHHhCCcEEEE
Confidence 9999999997632221 1 11222 25667899999999875 1111223444444443322122233
Q ss_pred EEEeccccCC-----CcccH-HHHHHHHHcC-------CcEEEEcccCCCCCCCCCCCHHH---HHHHHHHHHhcCCcEE
Q 010547 165 VGFWGGLVPE-----NAYNA-SALEALLNAG-------VLGLKSFMCPSGINDFPMTNASH---IKEGLSVLARYKRPLL 228 (507)
Q Consensus 165 ~~~~~~~~~~-----~~~~~-~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~a~~~~~~v~ 228 (507)
++.+. ..+. ..+.. +.+.+....| +..++.-+ + +..++.+ +.+.++.|+++++++.
T Consensus 94 ~G~hp-~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGl-----d--~~~~~~q~~~f~~q~~lA~~~glPv~ 165 (330)
T 2ob3_A 94 TGLWF-DPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVAT-----T--GKATPFQELVLKAAARASLATGVPVT 165 (330)
T ss_dssp EECCS-CCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEEC-----S--SSCCHHHHHHHHHHHHHHHHHCCCEE
T ss_pred ecCCc-CCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeC-----C--CCCCHHHHHHHHHHHHHHHHhCCeEE
Confidence 33332 0011 11111 2223333221 22333322 1 1223443 7888999999999999
Q ss_pred EecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHH
Q 010547 229 VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEA 308 (507)
Q Consensus 229 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~ 308 (507)
+|+.... ..+. +.++++++.+. ...++.+.|+... .+.+..+.+
T Consensus 166 iH~~~~~------------------------------r~a~-e~l~iL~~~g~----~~~~~~i~H~f~~-~~~e~a~~~ 209 (330)
T 2ob3_A 166 THTAASQ------------------------------RDGE-QQAAIFESEGL----SPSRVCIGHSDDT-DDLSYLTAL 209 (330)
T ss_dssp EECCGGG------------------------------THHH-HHHHHHHHTTC----CGGGEEECSGGGC-CCHHHHHHH
T ss_pred EECCCCC------------------------------CCHH-HHHHHHHHcCc----CcccEEEeCCCCC-CCHHHHHHH
Confidence 9994110 0122 44455554310 0124568899732 456888888
Q ss_pred HhCCCCEEEecccccccccccCCCCCCCc-eeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCC-CChh----hhccc
Q 010547 309 KTNGDSITVETCPHYLAFSAEEIPDGDTR-FKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSP-TVPE----LKLLD 380 (507)
Q Consensus 309 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~-~~~~----~~~~~ 380 (507)
.+.|..+.+..... ..+.. ..... ....-..........+.++++++ ..+.+.||..- .... .+..+
T Consensus 210 ~~~G~~i~~~~~G~-~tf~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~drilleTD~p~~l~~~~~~~g~~~~ 284 (330)
T 2ob3_A 210 AARGYLIGLDHIPY-SAIGL----EDNASASALLGIRSWQTRALLIKALIDQGYMKQILVSNDWTFGFSSYVTNIMDVMD 284 (330)
T ss_dssp HHTTCEEEECCTTC-CCTTC----TTCHHHHHHHCSSCHHHHHHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHHHH
T ss_pred HhCCCEEEeCCCcc-ccccc----cccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCcccccccCCCccc
Confidence 89998776642110 00000 00000 00000000113334577788888 56789999652 1110 00000
Q ss_pred cCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 010547 381 EGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 381 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lg 428 (507)
.+.+. +....+........+.|++++++.+++|.||+++|+
T Consensus 285 ----~n~pn---~~~~~~~~~ia~l~~~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 285 ----RVNPD---GMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp ----HHCTT---GGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHS
T ss_pred ----ccCCC---CcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 00000 111112233334445899999999999999999997
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-08 Score=93.00 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceE
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 290 (507)
+.+.+.++.|+++++++.+|++.... . .+.++++++.+ ....++
T Consensus 138 ~~~~~~~~~a~~~~~pv~iH~~~~~~----------------------------~----~~~~~~l~~~~----~~~~~~ 181 (291)
T 1bf6_A 138 KVFIAAALAHNQTGRPISTHTSFSTM----------------------------G----LEQLALLQAHG----VDLSRV 181 (291)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCS----------------------------H----HHHHHHHHHTT----CCGGGE
T ss_pred HHHHHHHHHHHHHCCeEEEeCCCCCC----------------------------h----HHHHHHHHHcC----CCchhE
Confidence 45788999999999999999943110 0 13445555431 113467
Q ss_pred EEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCC
Q 010547 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSD 368 (507)
Q Consensus 291 ~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD 368 (507)
++.|+... .+.+.++.+.+.|..+.+..+.. . . .++ .......+.++++++ ..+.++||
T Consensus 182 ~i~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~-~----------~-----~~~--~~~~~~~~~~~~~~~~~dril~~TD 242 (291)
T 1bf6_A 182 TVGHCDLK-DNLDNILKMIDLGAYVQFDTIGK-N----------S-----YYP--DEKRIAMLHALRDRGLLNRVMLSMD 242 (291)
T ss_dssp EECCCCSS-CCHHHHHHHHHTTCEEEECCTTC-T----------T-----TSC--HHHHHHHHHHHHHTTCGGGEEECCC
T ss_pred EEECCCCC-CCHHHHHHHHHCCCEEEEccCcc-c----------C-----CCC--HHHHHHHHHHHHHhCCCCeEEEcCC
Confidence 89999653 55678888888898776642210 0 0 011 223445677788887 45689999
Q ss_pred CCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 010547 369 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lg 428 (507)
...... . ...++ .+....+..........|++.+++.++.|.||+++||
T Consensus 243 ~p~~~~-~---------~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 243 ITRRSH-L---------KANGG-YGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp CCSGGG-S---------GGGTS-CCTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHCC
T ss_pred CCCCcc-c---------hhcCC-CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHhC
Confidence 753111 0 01112 2222223434444556789999999999999999985
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-07 Score=87.23 Aligned_cols=241 Identities=17% Similarity=0.109 Sum_probs=126.5
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc---
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 176 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (507)
+||+|+|+..... ..+.......+.+.||++++..+ +.+ ...+.+... ..... ++....|+.+...
T Consensus 5 ~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~--~~~--~~~~~~~~l---~~~~~--~~~~~~G~hP~~~~~~ 73 (259)
T 1zzm_A 5 FIDTHCHFDFPPF--SGDEEASLQRAAQAGVGKIIVPA--TEA--ENFARVLAL---AENYQ--PLYAALGLHPGMLEKH 73 (259)
T ss_dssp EEESCBCTTSTTT--TTCHHHHHHHHHHTTEEEEEEEC--CSG--GGHHHHHHH---HHHCT--TEEEEECCCGGGGGGC
T ss_pred EEEeeecCCchhh--ccCHHHHHHHHHHcCCCEEEEec--CCH--HHHHHHHHH---HHhCC--CeEEEEEecccccccC
Confidence 8999999987533 23466777888999999998763 222 223333222 22211 1222233433221
Q ss_pred --ccHHHHHHHHHc---CCcEEEEc-ccCCCCCCCC-CCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCC
Q 010547 177 --YNASALEALLNA---GVLGLKSF-MCPSGINDFP-MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 249 (507)
Q Consensus 177 --~~~~~~~~~~~~---g~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~ 249 (507)
...++++++... ++.+++.. +.. .....+ ....+.+...++.|+++++++.+|+....
T Consensus 74 ~~~~~~~l~~~~~~~~~~~~~iGEiGld~-~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~a~-------------- 138 (259)
T 1zzm_A 74 SDVSLEQLQQALERRPAKVVAVGEIGLDL-FGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH-------------- 138 (259)
T ss_dssp CHHHHHHHHHHHHHCCSSEEEEEEEEEEC-CSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH--------------
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEEeccCC-CCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccH--------------
Confidence 234556555542 33444321 111 000000 11234688889999999999999994321
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 250 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
..+++++++... ..++. .|+.+ ...+.++.+.+.|+.+.+. .. +.+
T Consensus 139 --------------------~~~~~il~~~~~-----~~~~i-~H~~~--g~~~~~~~~~~~g~~i~~~--g~-~~~--- 184 (259)
T 1zzm_A 139 --------------------DKLAMHLKRHDL-----PRTGV-VHGFS--GSLQQAERFVQLGYKIGVG--GT-ITY--- 184 (259)
T ss_dssp --------------------HHHHHHHHHHCC-----TTCEE-ETTCC--SCHHHHHHHHHTTCEEEEC--GG-GGC---
T ss_pred --------------------HHHHHHHHhcCC-----CCCEE-EEcCC--CCHHHHHHHHHCCCEEEEC--ce-eec---
Confidence 345555555411 12333 48876 3456677777778766542 11 000
Q ss_pred CCCCCCCceeEcCCCCChhhHHHHHHHHhc--CCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HH
Q 010547 330 EIPDGDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GR 406 (507)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~--G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 406 (507)
+.... +.++++. --.+.++||+.-..... +. +.... ...+...... +.
T Consensus 185 ---------------~~~~~---~~~~~~~~~~dril~eTD~P~~~p~~-------~~---g~~~~-p~~l~~~~~~la~ 235 (259)
T 1zzm_A 185 ---------------PRASK---TRDVIAKLPLASLLLETDAPDMPLNG-------FQ---GQPNR-PEQAARVFAVLCE 235 (259)
T ss_dssp ---------------TTTCS---HHHHHHHSCGGGEEECCCBTSSCCTT-------CT---TSCCC-GGGHHHHHHHHHH
T ss_pred ---------------cccHH---HHHHHHhCCHHHEEEecCCCCccCCC-------CC---CCCCc-HHHHHHHHHHHHH
Confidence 00011 1222222 24578999965221110 00 00011 1113333333 35
Q ss_pred hcCCCHHHHHHHHhhchhHHhCC
Q 010547 407 KYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 407 ~~gls~~~al~~~T~n~A~~lgl 429 (507)
..|++.+++.+..|.|++++||+
T Consensus 236 ~~g~~~e~~~~~~~~Na~rl~~l 258 (259)
T 1zzm_A 236 LRREPADEIAQALLNNTYTLFNV 258 (259)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHCC
T ss_pred HHCcCHHHHHHHHHHHHHHHhCc
Confidence 57999999999999999999986
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=90.89 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhcCCcEEEecCC-cccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
+.+++.++.|+++++++.+|+.. .. .. .+.++++++.+ ....+
T Consensus 151 ~~~~~~~~lA~~~~~pv~iH~~~~~~----------------------------~~----~~~~~~l~~~~----~~~~~ 194 (314)
T 2vc7_A 151 KVIRAAAIANKETKVPIITHSNAHNN----------------------------TG----LEQQRILTEEG----VDPGK 194 (314)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCTTTT----------------------------HH----HHHHHHHHHTT----CCGGG
T ss_pred HHHHHHHHHHHHHCCEEEEeCCCccc----------------------------Ch----HHHHHHHHHcC----CCccc
Confidence 44777889999999999999941 00 01 24445555431 01235
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeC
Q 010547 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSS 367 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgt 367 (507)
+.+.|+... .+.+.++.+.+.|..+....+.. . .+ .........+.+.+..| -.+.++|
T Consensus 195 ~~i~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~-~------------~~-----~~~~~~~~~i~~~~~~g~~drilleT 255 (314)
T 2vc7_A 195 ILIGHLGDT-DNIDYIKKIADKGSFIGLDRYGL-D------------LF-----LPVDKRNETTLRLIKDGYSDKIMISH 255 (314)
T ss_dssp EEETTGGGC-CCHHHHHHHHHTTCEEEECCTTC-T------------TT-----SCHHHHHHHHHHHHHTTCTTTEEECC
T ss_pred EEEECCCCC-CCHHHHHHHHHcCCEEEEeCCCc-c------------cC-----CCHHHHHHHHHHHHHcCCCCeEEEcC
Confidence 678898753 44677888888887766542110 0 00 00123334556666653 4569999
Q ss_pred CCCCCC-hhhhccccCCccccCCCCc--hhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 010547 368 DHSPTV-PELKLLDEGNFLKAWGGIS--SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 368 D~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lg 428 (507)
|..... .... .++... .+-. +....+..........|++.+++.++.|.|++++|+
T Consensus 256 D~~~~~~~~~~----~p~~~~-~g~~~~~~~~~~~~~~~~l~~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 256 DYCCTIDWGTA----KPEYKP-KLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp CCBSSBCCGGG----CTTSHH-HHCTTCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHTC
T ss_pred Ccccccccccc----chhhhh-cCCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 974211 0000 000000 0000 111123333344456789999999999999999885
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-06 Score=81.67 Aligned_cols=235 Identities=15% Similarity=0.219 Sum_probs=126.6
Q ss_pred ceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC---
Q 010547 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN--- 175 (507)
Q Consensus 99 GfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 175 (507)
++||+|+|+..... ..+.......+.+.||++++..+ +. ......+....+......... .|+.+..
T Consensus 5 ~~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~--~~--~~~~~~~~~l~~~~~~~i~~~----~GihP~~~~~ 74 (272)
T 2y1h_A 5 GLVDCHCHLSAPDF--DRDLDDVLEKAKKANVVALVAVA--EH--SGEFEKIMQLSERYNGFVLPC----LGVHPVQGLP 74 (272)
T ss_dssp CEEEEEECTTSGGG--TTTHHHHHHHHHHTTEEEEEECC--SS--GGGHHHHHHHHHHTTTTEEEE----ECCCSBC---
T ss_pred cEEEEeeCCCchhh--hcCHHHHHHHHHHCCCCEEEEeC--CC--HHHHHHHHHHHHHCCCCEEEE----EEECCCcccc
Confidence 59999999976432 23466777888999999999774 11 122333333332222122222 2333322
Q ss_pred --------cccHHHHHHHHH---cCCcEEEEcccCCCCCCCCC---------CCHHHHHHHHHHHHhcCCcEEEecCCcc
Q 010547 176 --------AYNASALEALLN---AGVLGLKSFMCPSGINDFPM---------TNASHIKEGLSVLARYKRPLLVHAEMEK 235 (507)
Q Consensus 176 --------~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 235 (507)
....+.+.++.. ..+.+++.. +. +..+. ...+.++..++.|+++++|+.+|+....
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iGE~-Gl---d~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~a~ 150 (272)
T 2y1h_A 75 PEDQRSVTLKDLDVALPIIENYKDRLLAIGEV-GL---DFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAG 150 (272)
T ss_dssp ----CBCCHHHHHHHHHHHHHHGGGCSEEEEE-EC---CCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTTCH
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCEEEEEec-cC---CCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcH
Confidence 122344444443 233444432 11 11111 1234688899999999999999995321
Q ss_pred cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCE
Q 010547 236 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSI 315 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i 315 (507)
..+++++++. +..++.+ |+.+ ...+.++.+.+.|+.+
T Consensus 151 ----------------------------------~~~~~il~~~------~~~~~v~-H~~~--g~~~~~~~~~~~g~~i 187 (272)
T 2y1h_A 151 ----------------------------------RPTINLLQEQ------GAEKVLL-HAFD--GRPSVAMEGVRAGYFF 187 (272)
T ss_dssp ----------------------------------HHHHHHHHHT------TCCSEEE-ETCC--SCHHHHHHHHHTTCEE
T ss_pred ----------------------------------HHHHHHHHhC------CCCCEEE-EccC--CCHHHHHHHHHCCCEE
Confidence 2344555553 1234555 8765 3456777777788765
Q ss_pred EEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCCCChhhhccccCCccccCCCCch
Q 010547 316 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393 (507)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (507)
... +... ... .+.+.+... -.+.++||........ +-..
T Consensus 188 ~~~--g~~~--------------------~~~----~~~~~~~~~~~drll~eTD~P~~~p~~-------------g~~~ 228 (272)
T 2y1h_A 188 SIP--PSII--------------------RSG----QKQKLVKQLPLTSICLETDSPALGPEK-------------QVRN 228 (272)
T ss_dssp EEC--GGGG--------------------TCH----HHHHHHHHSCGGGEEECCCTTSSCSST-------------TSCC
T ss_pred EEC--Cccc--------------------CcH----HHHHHHHhCCHHHEEEecCCCCCCCCC-------------CCcC
Confidence 542 2100 011 223333332 3458999975221110 0000
Q ss_pred hhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 394 LQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 394 ~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
....+...... +...|++.+++.+..+.|++++|++
T Consensus 229 ~p~~l~~~~~~la~~~g~~~e~~~~~~~~N~~~l~~~ 265 (272)
T 2y1h_A 229 EPWNISISAEYIAQVKGISVEEVIEVTTQNALKLFPK 265 (272)
T ss_dssp CGGGHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 00113333333 3446999999999999999999998
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=82.10 Aligned_cols=241 Identities=19% Similarity=0.219 Sum_probs=129.9
Q ss_pred eeecccccCCCCCCC-CCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcc-
Q 010547 100 LIDVHAHLDDPGRTE-WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY- 177 (507)
Q Consensus 100 fID~H~H~~~~~~~~-~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (507)
+||+|+|+....... ..+.......+.+.||++++... + .........+...... ++....++.+....
T Consensus 3 ~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~~Gv~~~v~~~--~-----~~~~~~~~~~~~~~~p--~~~~~~g~hP~~~~~ 73 (265)
T 1yix_A 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVA--T-----TLPSYLHMRDLVGERD--NVVFSCGVHPLNQND 73 (265)
T ss_dssp EEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECC--S-----SHHHHHHHHHHHCSCT--TEEEEECCCTTCCSS
T ss_pred EEEEeeCCCchhhcccccCHHHHHHHHHHCCCCEEEEeC--C-----CHHHHHHHHHHHHHCC--CeEEEEEeCCCcccc
Confidence 899999998654311 24567777888899999988653 1 2334444444443322 23333445443221
Q ss_pred --cHHHHHHHHHc------CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCC
Q 010547 178 --NASALEALLNA------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 249 (507)
Q Consensus 178 --~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~ 249 (507)
..++++++... |..|++.+... .......+.+...++.|+++++++.+|+...
T Consensus 74 ~~~~~~l~~~~~~~~~~~iGe~Gl~~~~~~----~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~--------------- 134 (265)
T 1yix_A 74 PYDVEDLRRLAAEEGVVALGETGLDYYYTP----ETKVRQQESFIHHIQIGRELNKPVIVHTRDA--------------- 134 (265)
T ss_dssp CCCHHHHHHHHTSTTEEEEEEEEEECTTCS----SCHHHHHHHHHHHHHHHHHHTCCEEEEEESC---------------
T ss_pred cchHHHHHHHhccCCeEEEEccccCCCcCC----CChHHHHHHHHHHHHHHHHhCCCEEEEecCc---------------
Confidence 35677766643 23334332110 0011234568889999999999999998421
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 250 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
...+++++++.+ .+..++.+ |+.. ...+.++.+.+.|+-+.. +.. +.+
T Consensus 135 -------------------~~~~~~~l~~~~----~p~~~~v~-H~~~--~~~~~~~~~~~~g~~~~~--sg~-~~~--- 182 (265)
T 1yix_A 135 -------------------RADTLAILREEK----VTDCGGVL-HCFT--EDRETAGKLLDLGFYISF--SGI-VTF--- 182 (265)
T ss_dssp -------------------HHHHHHHHHHTT----GGGTCEEE-TTCC--SCHHHHHHHHTTTCEEEE--CGG-GGS---
T ss_pred -------------------hHHHHHHHHhcC----CCCCCEEE-EcCC--CCHHHHHHHHHCCcEEEE--CCc-ccc---
Confidence 123444444421 01334444 8865 334566666666655443 221 000
Q ss_pred CCCCCCCceeEcCCCCChhhHHHHHHHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh
Q 010547 330 EIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 407 (507)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 407 (507)
... ..+.++++. + -.+.++||+....... +. |-......+........+
T Consensus 183 ---------------~~~---~~~~~~~~~~~~drll~~TD~P~~~~~~-------~~----g~~~~~~~l~~~~~~l~~ 233 (265)
T 1yix_A 183 ---------------RNA---EQLRDAARYVPLDRLLVETDSPYLAPVP-------HR----GKENQPAMVRDVAEYMAV 233 (265)
T ss_dssp ---------------TTC---HHHHHHHHHSCGGGEEECCCBTSCCCTT-------CT----TSCCCGGGHHHHHHHHHH
T ss_pred ---------------Cch---HHHHHHHHhCChHHEEEecCCCCCCCcc-------cC----CCCCchHHHHHHHHHHHH
Confidence 011 122333333 3 4578999975322110 00 000011123333444433
Q ss_pred -cCCCHHHHHHHHhhchhHHhCC
Q 010547 408 -YGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 408 -~gls~~~al~~~T~n~A~~lgl 429 (507)
.+++.+++.++.+.|+++++|+
T Consensus 234 ~~~~~~~~~~~i~~~Na~rl~~l 256 (265)
T 1yix_A 234 LKGVAVEELAQVTTDNFARLFHI 256 (265)
T ss_dssp HHTSCHHHHHHHHHHHHHHHTTC
T ss_pred HhCcCHHHHHHHHHHHHHHHhCc
Confidence 6899999999999999999998
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.66 E-value=8e-07 Score=83.46 Aligned_cols=251 Identities=16% Similarity=0.117 Sum_probs=134.8
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCce--eeEEEeccccCCC--
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWGGLVPEN-- 175 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-- 175 (507)
|||+|+|+....+ .++.......+.+.||..++..+ .+.+......+.+..... ..+....|+.+..
T Consensus 3 ~iD~H~HL~~~~~--~~d~~~vl~~a~~~gV~~~v~~g-------~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~ 73 (287)
T 3rcm_A 3 LIDIGVNLTNSSF--HDQQAAIVERALEAGVTQMLLTG-------TSLAVSEQALELCQQLDASGAHLFATAGVHPHDAK 73 (287)
T ss_dssp EEEEEECTTCGGG--TTCHHHHHHHHHHTTEEEEEECC-------CSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGG
T ss_pred eEEEeecCCchhc--ccCHHHHHHHHHHcCCeEEEEec-------CCHHHHHHHHHHHHhCCCCCceEEEEEEECcCccc
Confidence 8999999986433 24577788889999999988653 233444444333332110 1122223343322
Q ss_pred ---cccHHHHHHHHHc-CCcEEEEc-ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc
Q 010547 176 ---AYNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 176 ---~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (507)
+...+.++++.+. .+.+++.. +.+...........+.+.+.++.|+++++++.+|+....
T Consensus 74 ~~~~~~~~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a~--------------- 138 (287)
T 3rcm_A 74 AWDTDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDAS--------------- 138 (287)
T ss_dssp GCCTTHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH---------------
T ss_pred cCCHHHHHHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCCcH---------------
Confidence 2345666666653 34444432 111000000011245688899999999999999995421
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccC
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~ 330 (507)
.++++++++.... ..+. +.|+.+ ++.+.++.+.+.|.-+++.-. +.+.
T Consensus 139 -------------------~~~l~il~~~~~~----~~~~-V~H~fs--G~~e~a~~~l~~G~yis~~g~---i~~~--- 186 (287)
T 3rcm_A 139 -------------------ERLLAILKDYRDH----LTGA-VVHCFT--GEREALFAYLDLDLHIGITGW---ICDE--- 186 (287)
T ss_dssp -------------------HHHHHHHHTTGGG----CSCE-EECSCC--CCHHHHHHHHHTTCEEEECGG---GGCT---
T ss_pred -------------------HHHHHHHHHcCCC----CCeE-EEEeCC--CCHHHHHHHHHCCcEEEECch---hccc---
Confidence 4556666653110 1123 458876 567777888888876665310 0000
Q ss_pred CCCCCCceeEcCCCCChhhHHHHHHHHhc--CCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHh
Q 010547 331 IPDGDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRK 407 (507)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~--G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 407 (507)
+... .+.+.++. --.+.+.||..-..... +.....|-..-...+...... +..
T Consensus 187 --------------k~~~---~l~~~v~~ip~drlLlETD~P~l~p~~-------~~~~~rg~~n~P~~l~~v~~~lA~~ 242 (287)
T 3rcm_A 187 --------------RRGT---HLHPLVGNIPEGRLMLESDAPYLLPRS-------LRPKPKSGRNEPAFLPEVLREVALH 242 (287)
T ss_dssp --------------TTCG---GGHHHHTTSCTTSEEECCCTTSCCCTT-------CSSCCTTCCCCGGGHHHHHHHHHHH
T ss_pred --------------cCHH---HHHHHHHhcCCccEEEeccCCccCccc-------cccccCCCcCCHHHHHHHHHHHHHH
Confidence 0001 11222332 13468999964222110 000000111111224444444 356
Q ss_pred cCCCHHHHHHHHhhchhHHhCCC
Q 010547 408 YGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 408 ~gls~~~al~~~T~n~A~~lgl~ 430 (507)
.|++++++.+.+|.|+.++||++
T Consensus 243 ~g~s~eev~~~~~~N~~rlf~l~ 265 (287)
T 3rcm_A 243 RGESAEHTAAHTTATARDFFQLP 265 (287)
T ss_dssp HTSCHHHHHHHHHHHHHHHTTCC
T ss_pred hCcCHHHHHHHHHHHHHHHHCCC
Confidence 79999999999999999999983
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-06 Score=80.16 Aligned_cols=247 Identities=14% Similarity=0.066 Sum_probs=128.0
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc---
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 176 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (507)
+||+|+|+..... ..+.......+.+.||++++... + .........+.+..... +....|+.+...
T Consensus 5 ~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~--~-----~~~~~~~~~~l~~~~~~--i~~~~G~hP~~~~~~ 73 (264)
T 1xwy_A 5 MFDIGVNLTSSQF--AKDRDDVVACAFDAGVNGLLITG--T-----NLRESQQAQKLARQYSS--CWSTAGVHPHDSSQW 73 (264)
T ss_dssp CEEEEECTTSGGG--TTTHHHHHHHHHHTTCCEEEECC--C-----SHHHHHHHHHHHHHSTT--EEEEECCCGGGGGGC
T ss_pred EEEEeeCCCChhh--ccCHHHHHHHHHHCCCCEEEEeC--C-----CHHHHHHHHHHHHhCCC--EEEEEEECCcccccC
Confidence 8999999976432 13466777788999999998764 1 13334444443332221 222233433221
Q ss_pred --ccHHHHHHHHHc-CCcEEEEc-ccCCCCCCCC-CCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcc
Q 010547 177 --YNASALEALLNA-GVLGLKSF-MCPSGINDFP-MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (507)
Q Consensus 177 --~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (507)
...++++++... +..+++.. +.+. ....+ ....+.+.+.++.|+++++++.+|+...
T Consensus 74 ~~~~~~~l~~~~~~~~~~~iGE~Gld~~-~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~a----------------- 135 (264)
T 1xwy_A 74 QAATEEAIIELAAQPEVVAIGECGLDFN-RNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDA----------------- 135 (264)
T ss_dssp CHHHHHHHHHHHTSTTEEEEEEEEEETT-TCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC-----------------
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCC-CCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCCc-----------------
Confidence 233455555543 33344321 1110 00000 0112458889999999999999998421
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCC
Q 010547 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331 (507)
Q Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~ 331 (507)
...+++++++... ...++.+ |+.+ ...+.++.+.+.|+-+... .. +.
T Consensus 136 -----------------~~~~~~il~~~~~----~~~~~v~-H~~~--g~~~~~~~~~~~g~yi~~~--g~-~~------ 182 (264)
T 1xwy_A 136 -----------------HERFMTLLEPWLD----KLPGAVL-HCFT--GTREEMQACVAHGIYIGIT--GW-VC------ 182 (264)
T ss_dssp -----------------HHHHHHHHGGGGG----GSSCEEE-CSCC--CCHHHHHHHHHTTCEEEEC--GG-GG------
T ss_pred -----------------hHHHHHHHHhcCC----CCCcEEE-EccC--CCHHHHHHHHHCCeEEEEC--cc-cc------
Confidence 1344555555321 0223433 8765 3456667777777665543 10 00
Q ss_pred CCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhc
Q 010547 332 PDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKY 408 (507)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 408 (507)
.... ...+.+.++.. -.+.++||+.-..... ... .+ .|-......+...... +...
T Consensus 183 -----------~~~~---~~~l~~~~~~~~~drll~eTD~P~~~~~~-~~~--~~----~g~~n~p~~~~~~~~~~a~~~ 241 (264)
T 1xwy_A 183 -----------DERR---GLELRELLPLIPAEKLLIETDAPYLLPRD-LTP--KP----SSRRNEPAHLPHILQRIAHWR 241 (264)
T ss_dssp -----------CTTT---SHHHHHHGGGSCGGGEEECCCTTSCCCTT-CTT--CC----CSSCCCGGGHHHHHHHHHHHH
T ss_pred -----------CCcC---cHHHHHHHHhCCHHHEEEecCCCCcCccc-ccc--cc----CCCCCchHHHHHHHHHHHHHH
Confidence 0000 11233444432 3578999975322110 000 00 0000001113333333 3456
Q ss_pred CCCHHHHHHHHhhchhHHhCC
Q 010547 409 GVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 409 gls~~~al~~~T~n~A~~lgl 429 (507)
|+|.+++.+..+.|+++++|+
T Consensus 242 g~~~e~~~~~~~~Na~rl~~l 262 (264)
T 1xwy_A 242 GEDAAWLAATTDANVKTLFGI 262 (264)
T ss_dssp TCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCHHHHHHHHHHHHHHHhCc
Confidence 899999999999999999987
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-06 Score=80.57 Aligned_cols=258 Identities=15% Similarity=0.065 Sum_probs=131.4
Q ss_pred ceeecccccCCCCCCC--------CCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEecc
Q 010547 99 GLIDVHAHLDDPGRTE--------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170 (507)
Q Consensus 99 GfID~H~H~~~~~~~~--------~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (507)
.+||+|+|+....... ..+.......+.+.||++++..+ ...+......+.++... ++....|
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~-------~~~~~~~~~~~la~~~~--~v~~~~G 72 (301)
T 2xio_A 2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITG-------GNLQDSKDALHLAQTNG--MFFSTVG 72 (301)
T ss_dssp CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECC-------CSHHHHHHHHHHHTTCT--TEEEEEC
T ss_pred eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeC-------CCHHHHHHHHHHHHHCC--CEEEEEE
Confidence 5899999997653321 14566777888899999999764 12444455544444322 2333344
Q ss_pred ccCCCc---------ccHHHHHHHHHc---CCcEEEEc-ccCCCCCCCC--CCCHHHHHHHHHHHHhcCCcEEEecCCcc
Q 010547 171 LVPENA---------YNASALEALLNA---GVLGLKSF-MCPSGINDFP--MTNASHIKEGLSVLARYKRPLLVHAEMEK 235 (507)
Q Consensus 171 ~~~~~~---------~~~~~~~~~~~~---g~~~~~~~-~~~~~~~~~~--~~~~~~l~~~~~~a~~~~~~v~~H~~~~~ 235 (507)
+.+... ...++++++... .+.+++.. +.+. ..... ....+.+++.++.|+++++|+.+|+.+..
T Consensus 73 iHP~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~-~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r~a~ 151 (301)
T 2xio_A 73 CHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFD-RLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSH 151 (301)
T ss_dssp CCGGGTHHHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETT-CTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEESCH
T ss_pred ECcChhhhCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCC-cCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecCch
Confidence 544322 123455555543 23344331 1110 00000 11225678889999999999999994321
Q ss_pred cchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCE
Q 010547 236 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSI 315 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i 315 (507)
..+++++++... .....+.|+.+ .+.+.++.+.+.|+-+
T Consensus 152 ----------------------------------~~~~~il~~~~~-----~~~~~i~H~f~--g~~~~~~~~l~~g~yi 190 (301)
T 2xio_A 152 ----------------------------------AEFLDITKRNRD-----RCVGGVVHSFD--GTKEAAAALIDLDLYI 190 (301)
T ss_dssp ----------------------------------HHHHHHHHHTGG-----GSSCEEETTCC--CCHHHHHHHHHTTCEE
T ss_pred ----------------------------------HHHHHHHHhccC-----CCCcEEEEccC--CCHHHHHHHHhcCcEE
Confidence 344455554311 11123578876 4566777777788766
Q ss_pred EEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCCCChhh-----hccc------cC
Q 010547 316 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPEL-----KLLD------EG 382 (507)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~-----~~~~------~~ 382 (507)
.+..+ . ++.... .+.++.. -.+.++||..-..... +.+. ..
T Consensus 191 ~~~g~----~------------------~~~~~~----~~~~~~~p~drlLleTD~P~~~~~~~~~~~~~l~~~~p~~~~ 244 (301)
T 2xio_A 191 GFNGC----S------------------LKTEAN----LEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKK 244 (301)
T ss_dssp EECGG----G------------------SSSHHH----HHHHHTSCGGGEEECCCTTSCCCCTTSTTGGGCCCCCCEESS
T ss_pred EEccc----c------------------cCChHH----HHHHHhCChHHEEEecCCCcccccccccccccccccCccccc
Confidence 55311 0 001111 2334332 3568999965221000 0000 00
Q ss_pred Ccccc-CCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCCCCCCc
Q 010547 383 NFLKA-WGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGA 434 (507)
Q Consensus 383 ~~~~~-~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl~~~G~ 434 (507)
.+... ..+-.. ...+...... +.-.|++.+++.+..+.|++++|+++.+|.
T Consensus 245 ~~~g~~~~~~n~-p~~v~~~~~~ia~l~g~~~e~~~~~~~~Na~rlf~~~~~~~ 297 (301)
T 2xio_A 245 WESGHCLKDRNE-PCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFPVIAEN 297 (301)
T ss_dssp CCTTSEETTCCC-GGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCCC----
T ss_pred ccccccCCCCCC-hHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCchhhhh
Confidence 00000 000000 1112233333 233589999999999999999999844453
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-05 Score=75.03 Aligned_cols=251 Identities=12% Similarity=0.056 Sum_probs=137.6
Q ss_pred EecceeecccccCCCCCCC----------CCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeE
Q 010547 96 IMPGLIDVHAHLDDPGRTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 165 (507)
Q Consensus 96 v~PGfID~H~H~~~~~~~~----------~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 165 (507)
+=|++||+|+|+....+.. ..+.......+-+.||..++... ........+.+.+..+....+ +
T Consensus 23 ~p~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~--~~~~~~~n~~~~~~~~~~p~r----~ 96 (294)
T 4i6k_A 23 MKMNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQ--PSFLGTNNQAMLNAIQQYPDR----L 96 (294)
T ss_dssp --CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEEC--CGGGTTCCHHHHHHHHHSTTT----E
T ss_pred CCCCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEec--CcccccchHHHHHHHHHCCCe----E
Confidence 4457899999998643210 23466777788899999988653 111112222233333222222 1
Q ss_pred EEeccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhccc
Q 010547 166 GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 245 (507)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~ 245 (507)
....++.+. ...++++++.+.|..|++..... ...+....+.+...++.++++|+++.+|+...
T Consensus 97 ~g~~~v~P~--~~~~eL~~l~~~gv~Gi~l~~~~---~~~~~~~~~~~~~~~~~a~~~glpv~iH~~~~----------- 160 (294)
T 4i6k_A 97 KGIAVVQHT--TTFNELVNLKAQGIVGVRLNLFG---LNLPALNTPDWQKFLRNVESLNWQVELHAPPK----------- 160 (294)
T ss_dssp EEEECCCTT--CCHHHHHHHHTTTEEEEEEECTT---SCCCCSSSHHHHHHHHHHHHTTCEEEEECCHH-----------
T ss_pred EEEEEeCCc--ccHHHHHHHHHCCCcEEEeccCC---CCCCCcccHHHHHHHHHHHHcCCEEEEeeCcc-----------
Confidence 222233332 23467788888899999864321 11223466899999999999999999999321
Q ss_pred CcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh-------HHHHHHHHHHhCCCCEEEe
Q 010547 246 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS-------SSLDLLMEAKTNGDSITVE 318 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~-------~~~~~i~~~~~~g~~i~~~ 318 (507)
.+..+.+++++. ..++.+.|+.... ...+.+..+.+. -++.+.
T Consensus 161 ----------------------~l~~~~~~l~~~-------p~~~Vi~H~g~p~~~~g~~~~~~~~~~~l~~~-~nv~~k 210 (294)
T 4i6k_A 161 ----------------------YLVQLLPQLNEY-------SFDVVIDHFGRVDPVKGIEDPDYQKFLSLLNV-KQHWIK 210 (294)
T ss_dssp ----------------------HHHHHHHHHTTS-------SSCEEESGGGCCCTTTCTTCHHHHHHHHHCCT-TTEEEE
T ss_pred ----------------------hHHHHHHHHHHC-------CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhC-CCEEEE
Confidence 134555666653 3678889997521 133444444322 134443
Q ss_pred cccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhh
Q 010547 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 396 (507)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (507)
++.-.. .. ..+ .| .......+.+.+.. | -++.+|||+....... ...
T Consensus 211 ~Sg~~~-~~-----~~~-----~~---~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~~~--------------~~~--- 259 (294)
T 4i6k_A 211 VSGFYR-LG-----ATP-----SN---INIAQQAYNIFKEKGFLHKLIWGSDWPHTQHES--------------LIT--- 259 (294)
T ss_dssp CCCGGG-SS-----STT-----HH---HHHHHHHHHHHHHHTCGGGEECCCCBTCTTCTT--------------TCC---
T ss_pred eccccc-cc-----ccC-----CC---chhhHHHHHHHHHHhCcccEEEeCCCCCCCCcC--------------CCC---
Confidence 332100 00 000 00 01112334444432 3 3578999976443210 000
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCC
Q 010547 397 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 397 ~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~ 430 (507)
+...+....+.+++.++.-+..+.|+++++|++
T Consensus 260 -y~~~~~~l~~~~~~~~~~~~i~~~NA~rl~~l~ 292 (294)
T 4i6k_A 260 -YEDAIKAFKQIVFDKHEQCLILNQNPTELFGFS 292 (294)
T ss_dssp -HHHHHHHHHHHCCCHHHHHHHHTHHHHHHHTC-
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHCHHHHhCCC
Confidence 222334444556899999999999999999983
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-05 Score=74.25 Aligned_cols=232 Identities=18% Similarity=0.138 Sum_probs=128.0
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC----C
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE----N 175 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 175 (507)
+||+|+|+... ++.......+.+.||..+.. + + +.+......+.+.... .+....|+.+. .
T Consensus 3 liDtH~HL~~~-----~d~~~vl~~a~~~gV~~i~v-~--~-----~~~~~~~~~~la~~~~--~v~~~~GiHP~~~~~~ 67 (254)
T 3gg7_A 3 LIDFHVHLDLY-----PDPVAVARACEERQLTVLSV-T--T-----TPAAWRGTLALAAGRP--HVWTALGFHPEVVSER 67 (254)
T ss_dssp CEEEEECGGGS-----SSHHHHHHHHHHTTCEEEEC-C--S-----SGGGHHHHHGGGTTCT--TEEECBCCCGGGTTTT
T ss_pred eEEEeeCCCCC-----CCHHHHHHHHHHCCCcEEEe-c--C-----CHHHHHHHHHHHHhCC--CeEEEEeeCccccccc
Confidence 89999999853 24667778888999998662 2 2 2333344444333221 23333344432 2
Q ss_pred cccHHHHHHHHHcCCcEEEEcccCCCCCCCCC------CCHHHHHHHHHHHHhcCCcEE-EecCCcccchhhhhcccCcC
Q 010547 176 AYNASALEALLNAGVLGLKSFMCPSGINDFPM------TNASHIKEGLSVLARYKRPLL-VHAEMEKGSERHVKLEDDTL 248 (507)
Q Consensus 176 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~a~~~~~~v~-~H~~~~~~~~~~~~~~~~~~ 248 (507)
....+.+.++... ..+++.. +- +..+. ...+.+++.+++|++++.|+. +|+....
T Consensus 68 ~~~l~~l~~~~~~-~vaIGEi-GL---D~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~a~------------- 129 (254)
T 3gg7_A 68 AADLPWFDRYLPE-TRFVGEV-GL---DGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAE------------- 129 (254)
T ss_dssp GGGTHHHHHHGGG-CSEEEEE-EC---CCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTTCH-------------
T ss_pred HHHHHHHHHHhhh-ccEEEEE-ec---CCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcH-------------
Confidence 2344555555532 3344331 00 11111 123457888999999999998 9995421
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccc
Q 010547 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328 (507)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~ 328 (507)
.++++++++.. .....+.|+.+ ++.+.++.+.+.|..+++....
T Consensus 130 ---------------------~~~~~il~~~~------~~~~~v~H~fs--G~~e~a~~~l~~G~yis~~g~~------- 173 (254)
T 3gg7_A 130 ---------------------SEVLNCLEANP------RSGTPILHWYS--GSVTELRRAISLGCWFSVGPTM------- 173 (254)
T ss_dssp ---------------------HHHHHHHHHCG------GGEEEEEETCC--SCHHHHHHHHHTTCEEEECHHH-------
T ss_pred ---------------------HHHHHHHHHcC------CCCcEEEEeCC--CCHHHHHHHHcCCcEEEECccc-------
Confidence 35566666531 11123558877 5677788888888776653210
Q ss_pred cCCCCCCCceeEcCCCCChhhHHHHHHHHhcC--CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-H
Q 010547 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G 405 (507)
Q Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G--~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 405 (507)
. +.. .+.+.++.- -.+.+.||.+ +.... |-..-...+...... +
T Consensus 174 ----------~-----~~~----~~~~~v~~ip~drlLlETD~P-~~~~r-------------g~~n~P~~v~~v~~~iA 220 (254)
T 3gg7_A 174 ----------V-----RTQ----KGAALIRSMPRDRVLTETDGP-FLELD-------------GQAALPWDVKSVVEGLS 220 (254)
T ss_dssp ----------H-----TSH----HHHHHHHHSCGGGEEECCCTT-TSEET-------------TEECCGGGHHHHHHHHH
T ss_pred ----------C-----chH----HHHHHHHHcCCCeEEEeCCCC-ccccC-------------CCCCCHHHHHHHHHHHH
Confidence 0 011 122222221 2468999964 32110 000111113333333 4
Q ss_pred HhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 010547 406 RKYGVTLEQLASWWSERPAKLAGQVSKG 433 (507)
Q Consensus 406 ~~~gls~~~al~~~T~n~A~~lgl~~~G 433 (507)
.-.|++.+++.+..+.|+.++|++.+-|
T Consensus 221 ~~~g~~~ee~~~~~~~N~~~lf~~~~~~ 248 (254)
T 3gg7_A 221 KIWQIPASEVERIVKENVSRLLGTVREG 248 (254)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHC----
T ss_pred HHhCcCHHHHHHHHHHHHHHHHCCCccc
Confidence 5568999999999999999999985444
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-05 Score=76.98 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 210 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
...+++.++.|++.++|+.+|+..... +. +.++++++.+. +..+
T Consensus 168 ~~~f~aq~~~A~e~glPViiH~r~gr~-------------------------------a~-d~l~iL~e~g~----~~~~ 211 (363)
T 3ovg_A 168 LKALEVAARTSILTGCPILVHTQLGTM-------------------------------AL-EVAKHLIGFGA----NPDK 211 (363)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETTCS-------------------------------HH-HHHHHHHHHTC----CGGG
T ss_pred HHHHHHHHHHHHHhCCEEEEeCCCCCC-------------------------------HH-HHHHHHHhcCC----CCCc
Confidence 345788899999999999999843211 12 34455555311 1235
Q ss_pred EEEEecCChhHHHHHHHHHH-hCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEe
Q 010547 290 LHIVHLSDASSSLDLLMEAK-TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLS 366 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lg 366 (507)
+.+.|+... ...+..+++. +.|..+.+.... .+...| .......+.++++++. .+.+.
T Consensus 212 vvi~H~~~~-~~~~~a~~~l~~~G~yI~f~g~~---------------~~~~~~---~~~ra~~l~~lv~~~p~drILle 272 (363)
T 3ovg_A 212 IQISHLNKN-PDKYYYEKVIKETGVTLCFDGPD---------------RVKYYP---DSLLAENIKYLVDKGLQKHITLS 272 (363)
T ss_dssp EEEECGGGS-CCHHHHHHHHHHHCCEEEECCTT---------------CTTTCC---HHHHHHHHHHHHHTTCGGGEEEC
T ss_pred EEEEcCCCC-CCHHHHHHHHHHCCcEEEECCee---------------ccccCC---hhHHHHHHHHHHHhcCCCeEEEe
Confidence 778899853 4455566666 778766654210 000000 1223455677777764 47999
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEE
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 444 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlv 444 (507)
||.... ......+ .. ......+...........+...|++.+++.++.|.||+++|+++..+++.+|+.-+-|
T Consensus 273 TDap~~-~~l~~~G--~~--~g~~~n~p~~l~~~~~~~a~~rGis~eei~~it~~Np~rlf~l~~~~~~~~~~~~~~~ 345 (363)
T 3ovg_A 273 LDAGRI-LYQRNYG--LT--KGKQTFGLAYLFDRFLPLLKQVGVSKEAIFDILVNNPKRVLAFDEKRNFDPLKVSKEV 345 (363)
T ss_dssp CCCCSG-GGSHHHH--HH--TTEECCCTHHHHHTHHHHHHHHTCCHHHHHHHHTHHHHHHTSCCCCCCCCGGGSCHHH
T ss_pred CCCCCC-cCCCCCC--cc--CCCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCcCccCcccCCHHH
Confidence 996522 1110000 00 0000012222233344456678999999999999999999999777999999976543
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=98.36 E-value=3e-05 Score=75.24 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhc-CCcEEEec-CCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhh-ccCCCCCC
Q 010547 211 SHIKEGLSVLARY-KRPLLVHA-EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT-RTDGPAEG 287 (507)
Q Consensus 211 ~~l~~~~~~a~~~-~~~v~~H~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-~~~~~~~g 287 (507)
..+++.++.|++. |++|.+|+ ..... ..+.++++++. +. ..
T Consensus 179 ~~f~aq~~~A~~~~glPV~iH~~r~~~a--------------------------------~~e~l~iL~e~~~~----~~ 222 (365)
T 3rhg_A 179 NSLRAAALAQNNNPYASMNIHMPGWQRR--------------------------------GDEVLDILLTEMGC----DP 222 (365)
T ss_dssp HHHHHHHHHHTTCTTCEEEEECCTTSCC--------------------------------HHHHHHHHTTTTCC----CG
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCCCcC--------------------------------HHHHHHHHHhccCC----CC
Confidence 4577888999999 99999997 42111 13445555542 11 12
Q ss_pred ceEEEEecC-ChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeE
Q 010547 288 AHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDM 364 (507)
Q Consensus 288 ~~~~~~h~~-~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~ 364 (507)
.++.+.|+. +. ...+..+++.+.|..+.+....... .++..+ . .| .+......+.+++++|. .+.
T Consensus 223 ~~vvi~H~~rs~-~~~e~a~~~l~~G~~I~~~g~g~~~-----tf~~~~--~--~~--~d~~~a~~l~~li~~g~~dril 290 (365)
T 3rhg_A 223 AKISLAHSDPSG-KDIDYQCKMLDRGVWLEFDMIGLDI-----SFPKEG--A--AP--SVMDTVEAVATLIERGYGNQIV 290 (365)
T ss_dssp GGEEESCCGGGT-TCHHHHHHHHHTTCEEEECCTTCCC-----BCSSSC--B--CC--CHHHHHHHHHHHHHTTCGGGEE
T ss_pred CceEEecCCCCC-CCHHHHHHHHhCCCEEEecCCCccc-----cccccc--c--cc--chHHHHHHHHHHHHhCCCCcEE
Confidence 347778998 43 5678888888899877664210000 010000 0 00 02234456777787774 578
Q ss_pred EeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCC
Q 010547 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 365 lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~ 430 (507)
+.||....... . ..++ .+....+......+...|++.+++.++.|.||+++|+++
T Consensus 291 leTD~p~l~~~-~---------~~G~-~~~~~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~l~ 345 (365)
T 3rhg_A 291 LSHDVFLKQMW-A---------KNGG-NGWGFVPNVFLSLLAQRGIDKTIIDKLCIDNPANLLAAE 345 (365)
T ss_dssp ECCCCCSGGGS-G---------GGTS-CTTTHHHHTHHHHHHHTTCCHHHHHHHTTHHHHHHHHSC
T ss_pred EeCCCCCCCCC-C---------cCCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCC
Confidence 99996532211 1 1112 333343444455567889999999999999999999983
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.32 E-value=6e-05 Score=73.15 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCCcEEEecCC-cccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
..+++.++.|++.|+++.+|+.. ... ..+.++++++.+. ...+
T Consensus 190 ~~f~aq~~~A~~~glPV~iH~~gr~~a--------------------------------~~e~l~iL~e~g~----~~~~ 233 (364)
T 3k2g_A 190 KSLRGAARAQVRTGLPLMVHLPGWFRL--------------------------------AHRVLDLVEEEGA----DLRH 233 (364)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCTTSCC--------------------------------HHHHHHHHHHTTC----CGGG
T ss_pred HHHHHHHHHHHHHCCeEEEecCCCCcc--------------------------------HHHHHHHHHHcCC----CCCc
Confidence 45778889999999999999831 110 1344455555311 1234
Q ss_pred EEEEecCChhH-HHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEe
Q 010547 290 LHIVHLSDASS-SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLS 366 (507)
Q Consensus 290 ~~~~h~~~~~~-~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lg 366 (507)
+.+.|+... . +.+..+++.+.|..+.+........ ++.. .+ ..| .+......+.+++++|. .+.+.
T Consensus 234 vvi~H~~~s-~~~~e~a~~~l~~G~~I~f~g~gt~~~-----f~~~--~~-~~~--~d~~ra~~l~~lv~~gp~drille 302 (364)
T 3k2g_A 234 TVLCHMNPS-HMDPVYQATLAQRGAFLEFDMIGMDFF-----YADQ--GV-QCP--SDDEVARAILGLADHGYLDRILLS 302 (364)
T ss_dssp EEECCCGGG-TTCHHHHHHHHHHTCEEEECCTTCCCE-----ETTT--TE-ECC--CHHHHHHHHHHHHHTTCGGGEEEC
T ss_pred eEEECCCCC-CCCHHHHHHHHhCCcEEEecCCccccc-----cccc--cc-ccc--cHHHHHHHHHHHHHhCCcccEEEe
Confidence 677899843 4 7888888888898776642110000 0000 00 001 01234456777777774 57899
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCC
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~ 430 (507)
||........ ..++ .+....+......+...|++.+++.++.|.||+++|+++
T Consensus 303 TD~p~~~~~~----------~~gg-~~~~~l~~~~~~~l~~~Gis~eei~~~~~~Np~rlf~l~ 355 (364)
T 3k2g_A 303 HDVFVKMMLT----------RYGG-NGYAFVTKHFLPRLRRHGLDDAALETLMVTNPRRVFDAS 355 (364)
T ss_dssp CCCCSGGGSG----------GGTS-CTTSHHHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHCTT
T ss_pred CCCCCCCCCC----------CCCC-CCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 9965221111 0112 333333444444556789999999999999999999994
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-05 Score=73.26 Aligned_cols=253 Identities=13% Similarity=0.055 Sum_probs=137.2
Q ss_pred cceeecccccCCCCCC--------CCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCc---eeeEE
Q 010547 98 PGLIDVHAHLDDPGRT--------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI---YVDVG 166 (507)
Q Consensus 98 PGfID~H~H~~~~~~~--------~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~ 166 (507)
--|||+|+|+....+. ..++.......+.+.||..++..+ .+.+......+.++... ...+.
T Consensus 26 m~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g-------~~~~~~~~~~~La~~~~~~~~~~v~ 98 (325)
T 3ipw_A 26 QQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITS-------GCLNDFKKAIEIINKYQNLTNIKLV 98 (325)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC-------CSHHHHHHHHHHHHHHGGGCSSEEE
T ss_pred CCeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEcc-------CCHHHHHHHHHHHHHCCCcccceEE
Confidence 3599999999875441 135677888899999999998664 23444444444333211 11233
Q ss_pred EeccccCCC-----cc-cHHHHHHHHHc---CCcEEEEcccCCCCCCCC--CC----CHHHHHHHHHHHHh-cCCcEEEe
Q 010547 167 FWGGLVPEN-----AY-NASALEALLNA---GVLGLKSFMCPSGINDFP--MT----NASHIKEGLSVLAR-YKRPLLVH 230 (507)
Q Consensus 167 ~~~~~~~~~-----~~-~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~--~~----~~~~l~~~~~~a~~-~~~~v~~H 230 (507)
...|+.+.. .. ..+.++++... .+.+++.. +. +..+ .. ..+.+++.+++|++ +++|+.+|
T Consensus 99 ~~~GiHP~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEi-GL---D~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH 174 (325)
T 3ipw_A 99 TTIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEI-GL---DYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFH 174 (325)
T ss_dssp EEECCCGGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEE-EE---ETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEE
T ss_pred EEEEECcchhhcCCchHHHHHHHHHHhcCCCCEEEEEee-ec---CCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 333343321 11 45666666643 33444331 00 1111 11 23467888999999 99999999
Q ss_pred cCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHh
Q 010547 231 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 310 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~ 310 (507)
+.... .++++++++.... ..+. +.|+.+ ++.+.++.+.+
T Consensus 175 ~r~A~----------------------------------~d~l~iL~~~~~~----~~~g-ViH~Fs--Gs~e~a~~~l~ 213 (325)
T 3ipw_A 175 CRKSW----------------------------------SDLCQLNKELGYN----GCKG-VVHCFD--GTEEEMNQILN 213 (325)
T ss_dssp EESCH----------------------------------HHHHHHHHHTTCT----TSCE-EECSCC--CCHHHHHHHHH
T ss_pred eCchH----------------------------------HHHHHHHHhcCCC----CCcE-EEEECC--CCHHHHHHHHh
Confidence 95432 4566666664211 1123 459888 67788888888
Q ss_pred CCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhc--CCeeEEeCCCCCCChhh-----hccccCC
Q 010547 311 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPEL-----KLLDEGN 383 (507)
Q Consensus 311 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~--G~~~~lgtD~~~~~~~~-----~~~~~~~ 383 (507)
.|.-+++.-+. ++..... +.++. --.+.+-||..-..... +.+. .+
T Consensus 214 lG~yis~~G~~----------------------~k~~~~~----~~v~~iPldrlLlETDaP~l~~~~~~~~~~~~~-~p 266 (325)
T 3ipw_A 214 EGWDIGVTGNS----------------------LQSIELL----NVMKQIPIERLHIETDCPYCGIKKTSAGFKYLK-EK 266 (325)
T ss_dssp TTCEEEECSGG----------------------GSSHHHH----HHHTTSCGGGEEECCCTTSCCCCTTSGGGGGCS-SC
T ss_pred cCcEEeeCccc----------------------cCcHHHH----HHHHhCCcccEEEeCCCccccccccccchhccc-cc
Confidence 88776653210 0111111 22222 12467999954221100 0000 00
Q ss_pred cc--------cc-CCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 384 FL--------KA-WGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 384 ~~--------~~-~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
+. .. ..+-..-...+...... +.-.|++++++.+.++.|.-++|++
T Consensus 267 ~p~r~~~k~~~~~~~g~rNeP~~v~~v~~~iA~l~g~~~eeva~~t~~Na~~lF~~ 322 (325)
T 3ipw_A 267 DFGVKVEKYQRNKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMYFP 322 (325)
T ss_dssp CCCBCGGGCCTTSCBTTCCCGGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred CccccccccccccccCCcCcHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHhCc
Confidence 00 00 00101111224443433 4556899999999999999999987
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.5e-05 Score=70.97 Aligned_cols=243 Identities=14% Similarity=0.162 Sum_probs=123.0
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc---
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 176 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (507)
+||+|+|+..... ..+.......+.+.||+.++..+. . ........+....... +....++.+...
T Consensus 2 ~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~~--~-----~~~~~~~~~~~~~~p~--~~~~~g~~P~~~~~~ 70 (265)
T 2gzx_A 2 LIDTHVHLNDEQY--DDDLSEVITRAREAGVDRMFVVGF--N-----KSTIERAMKLIDEYDF--LYGIIGWHPVDAIDF 70 (265)
T ss_dssp CEEEEECTTSGGG--TTTHHHHHHHHHHTTCCEEEEEEC--S-----HHHHHHHHHHHHHCTT--EEEEECCCGGGGGGC
T ss_pred eEEEeeCCCCccc--ccCHHHHHHHHHHcCCCEEEEeCC--C-----HHHHHHHHHHHHhCCC--EEEEEEeccCccccC
Confidence 7999999986432 124666777888999999886641 1 2333333333332221 223333443221
Q ss_pred --ccHHHHHHHHHc-CCcEEEEc-ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 177 --YNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 177 --~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
...++++++.+. +..+++.. +.............+.+...++.|+++++++.+|+...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~------------------ 132 (265)
T 2gzx_A 71 TEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREA------------------ 132 (265)
T ss_dssp CHHHHHHHHHHTTSTTEEEEEEEEEECSCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC------------------
T ss_pred CHHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEeccc------------------
Confidence 124455555432 23333321 00000000012344568899999999999999998421
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHh-CCCCEEEecccccccccccCC
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT-NGDSITVETCPHYLAFSAEEI 331 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~-~g~~i~~~~~~~~~~~~~~~~ 331 (507)
...+++++++... ...++. .|.... ..+.+..+.+ .|+-+.. +... ...
T Consensus 133 ----------------~~~~~~~l~~~p~----~~~~~i-~H~~~g--~~~~~~~~l~~~~~y~~~--sg~~-~~~---- 182 (265)
T 2gzx_A 133 ----------------TQDCIDILLEEHA----EEVGGI-MHSFSG--SPEIADIVTNKLNFYISL--GGPV-TFK---- 182 (265)
T ss_dssp ----------------HHHHHHHHHHTTG----GGTCEE-ETTCCS--CHHHHHHHHHTSCCEEEE--CGGG-GCS----
T ss_pred ----------------HHHHHHHHHhcCC----CCCcEE-EEcCCC--CHHHHHHHHHHCCceEEe--ccee-ecC----
Confidence 1244455555310 023454 566542 3444555545 5654433 2110 000
Q ss_pred CCCCCceeEcCCCCChhhHHHHHHHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh-c
Q 010547 332 PDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-Y 408 (507)
Q Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 408 (507)
.. ..+.++++. | -.+.++||+.-..... + .|.......+........+ .
T Consensus 183 --------------~~---~~~~~~i~~~~~dril~gSD~P~~~~~~-------~----~g~~~~~~~~~~~~~~l~~~~ 234 (265)
T 2gzx_A 183 --------------NA---KQPKEVAKHVSMERLLVETDAPYLSPHP-------Y----RGKRNEPARVTLVAEQIAELK 234 (265)
T ss_dssp --------------SC---CHHHHHHHHSCTTTEEECCCTTSCCCTT-------C----TTSCCCGGGHHHHHHHHHHHT
T ss_pred --------------Cc---HHHHHHHHhCChhhEEEccCCCCCCCcc-------c----CCCCCChHHHHHHHHHHHHHh
Confidence 00 122333333 3 4678999975332110 0 0111111123333444434 6
Q ss_pred CCCHHHHHHHHhhchhHHhCC
Q 010547 409 GVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 409 gls~~~al~~~T~n~A~~lgl 429 (507)
+++.++.-++.+.|+++++++
T Consensus 235 ~~~~~~~~~i~~~Na~rl~~~ 255 (265)
T 2gzx_A 235 GLSYEEVCEQTTKNAEKLFNL 255 (265)
T ss_dssp TCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999998
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.24 E-value=7.9e-05 Score=71.22 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 210 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
...+++.++.|++.++|+.+|+..... +.+ .++++++.+. ...+
T Consensus 167 ~~~f~aq~~~A~~~glPViiH~r~g~~-------------------------------a~~-~l~iL~e~~~----~~~~ 210 (330)
T 3pnz_A 167 EKTIRAVARAHHETKAPIHSHTEAGTM-------------------------------ALE-QIEILKQENI----PLEY 210 (330)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECGGGCC-------------------------------HHH-HHHHHHHTTC----CGGG
T ss_pred HHHHHHHHHHHHHHCCeEEEeCCCCcC-------------------------------hHH-HHHHHHHcCC----CCCe
Confidence 345788899999999999999853111 112 2555555311 1235
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEeC
Q 010547 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSS 367 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lgt 367 (507)
+.+.|+... .+.+..+++.+.|..+.+..... +... ........+.+.+++|. .+.+.|
T Consensus 211 vvi~H~~~s-~~~e~a~~~l~~G~~i~~~g~~t---------------~~~~---~~~~~~~~l~~lv~~g~~drilleT 271 (330)
T 3pnz_A 211 LSIGHMDRN-LDPYYHKQVAKTGAFMSFDGIAK---------------IKYA---PESARIAAILYLVSEGFEDQILVSG 271 (330)
T ss_dssp EEETTGGGS-CCHHHHHHHHTTTCEEEECCTTC---------------TTTC---CHHHHHHHHHHHHHTTCGGGEEECC
T ss_pred EEEecCCCC-CCHHHHHHHHHcCcEEEEccCcc---------------cCCC---ChHHHHHHHHHHHHcCCCCeEEEeC
Confidence 677899622 55778888888887766542110 0000 01223345667777663 578999
Q ss_pred CCCCCChhhhccccCCccccCCCCchh-hhHHHHHHHHHHhcCCCHHH-HHHHHhhchhHHhCCC
Q 010547 368 DHSPTVPELKLLDEGNFLKAWGGISSL-QFVLPVTWSYGRKYGVTLEQ-LASWWSERPAKLAGQV 430 (507)
Q Consensus 368 D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~gls~~~-al~~~T~n~A~~lgl~ 430 (507)
|.... ...... |. ..+..-+ ...++.+...+...|+|.++ +.++.|.||+++|+++
T Consensus 272 D~p~~-~~~~~~--G~----~~~~~~~~~~~~~~l~~~a~~~Gis~ee~i~~~t~~Np~rlf~l~ 329 (330)
T 3pnz_A 272 DTARK-TYYKHY--GH----GPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTFK 329 (330)
T ss_dssp CCCSG-GGSHHH--HC----CSTTTHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHSSCC
T ss_pred CCCCC-CCCCcc--CC----CCCcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHhcCC
Confidence 96531 111000 00 0111111 12222332234678999998 9999999999999973
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-05 Score=74.44 Aligned_cols=240 Identities=16% Similarity=0.132 Sum_probs=126.5
Q ss_pred ceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC---
Q 010547 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN--- 175 (507)
Q Consensus 99 GfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 175 (507)
-++|+|+|+...... .+.......+.+.||++++..+ + .........+.+.... ++....|+.+..
T Consensus 12 ~~~~~~~hl~~~~~~--~~~~~~l~~~~~~GV~~~v~~~--~-----~~~~~~~~~~l~~~~p--~i~~~~G~hP~~~~~ 80 (268)
T 1j6o_A 12 HMVDTHAHLHFHQFD--DDRNAVISSFEENNIEFVVNVG--V-----NLEDSKKSLDLSKTSD--RIFCSVGVHPHDAKE 80 (268)
T ss_dssp CEEEEEECTTSGGGT--TTHHHHHHTTTTTTEEEEEEEC--S-----SHHHHHHHHHHHTTCT--TEEEEECCCGGGGGG
T ss_pred cccccccCCCChhhc--cCHHHHHHHHHHcCCCEEEEeC--C-----CHHHHHHHHHHHHHCC--CEEEEEeeccccccc
Confidence 368999999864332 4566777788899999988664 1 2334444444443322 233333344322
Q ss_pred --cccHHHHHHHHHc------CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCc
Q 010547 176 --AYNASALEALLNA------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 247 (507)
Q Consensus 176 --~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~ 247 (507)
....++++++... |..|++.+... .......+.+...++.|.++++++.+|+...
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~iGe~Gld~~~~~----~~~~~q~~~f~~~~~~a~~~~lPv~iH~~~~------------- 143 (268)
T 1j6o_A 81 VPEDFIEHLEKFAKDEKVVAIGETGLDFFRNI----SPAEVQKRVFVEQIELAGKLNLPLVVHIRDA------------- 143 (268)
T ss_dssp CCTTHHHHHHHHTTSTTEEEEEEEEEETTTCS----SCHHHHHHHHHHHHHHHHHHTCCEEEEEESC-------------
T ss_pred cCHHHHHHHHHHhccCCEEEEEccccCCcccC----CChHHHHHHHHHHHHHHHHhCCCEEEEeCch-------------
Confidence 1234555555432 22233322100 0012345678899999999999999998421
Q ss_pred CCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccc
Q 010547 248 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 327 (507)
Q Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~ 327 (507)
...+++++++... ...++.+ |+.+ ...+.++.+.+.|+-+.. +.. +.+
T Consensus 144 ---------------------~~~~~~il~~~p~----~~~~~I~-H~~~--g~~~~~~~~~~~g~y~~~--sg~-~~~- 191 (268)
T 1j6o_A 144 ---------------------YSEAYEILRTESL----PEKRGVI-HAFS--SDYEWAKKFIDLGFLLGI--GGP-VTY- 191 (268)
T ss_dssp ---------------------HHHHHHHHHHSCC----CSSCEEE-TTCC--SCHHHHHHHHHHTEEEEE--CGG-GGC-
T ss_pred ---------------------HHHHHHHHHhcCC----CCCCEEE-EcCC--CCHHHHHHHHHCCCeEEe--ccc-ccc-
Confidence 1344555555310 1345666 8865 334555555555644333 211 000
Q ss_pred ccCCCCCCCceeEcCCCCChhhHHHHHHHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH
Q 010547 328 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405 (507)
Q Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 405 (507)
.... .+.++++. + -.+.++||++-..... .. |.......+.......
T Consensus 192 -----------------~~~~---~l~~~i~~~~~driL~eTD~P~~~~~~-~~----------g~~n~p~~~~~~~~~l 240 (268)
T 1j6o_A 192 -----------------PKNE---ALREVVKRVGLEYIVLETDCPFLPPQP-FR----------GKRNEPKYLKYVVETI 240 (268)
T ss_dssp -----------------TTCH---HHHHHHHHHCGGGEEECCCBTSCCCGG-GT----------TSCCCGGGHHHHHHHH
T ss_pred -----------------cchH---HHHHHHHhCChhhEEEecCCCCCCCcc-cC----------CCCCchHHHHHHHHHH
Confidence 0111 12233332 2 4678999975332211 00 0000011133333333
Q ss_pred -HhcCCCHHHHHHHHhhchhHHhCC
Q 010547 406 -RKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 406 -~~~gls~~~al~~~T~n~A~~lgl 429 (507)
...+++.++.-+..+.|++++||+
T Consensus 241 a~~~~~~~e~~~~i~~~Na~rlf~l 265 (268)
T 1j6o_A 241 SQVLGVPEAKVDEATTENARRIFLE 265 (268)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhCc
Confidence 336899999999999999999987
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.8e-05 Score=71.78 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=73.5
Q ss_pred cceeecccccCCCCC----------CCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEE
Q 010547 98 PGLIDVHAHLDDPGR----------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167 (507)
Q Consensus 98 PGfID~H~H~~~~~~----------~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (507)
+++||+|+|+..... ....+.......+-+.||+..+... . .......+.+.+..+....+. ..
T Consensus 12 ~~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~-~-~~~~~~n~~~~~~~~~~p~r~----~~ 85 (288)
T 2ffi_A 12 LTAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQ-P-SFLGTDNRYLLSALQTVPGQL----RG 85 (288)
T ss_dssp CCCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBC-C-GGGTTCCHHHHHHHHHSTTTB----CC
T ss_pred CCceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEEC-C-ccccccHHHHHHHHHHCCCCE----EE
Confidence 379999999975321 0013455666777889999887553 1 111122233333333222211 11
Q ss_pred eccccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 010547 168 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (507)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 232 (507)
.+++.+.. ..++++++.+.|..|++...... ..+....+.+..+++.+.++|+++.+|+.
T Consensus 86 ~~~v~p~~--~~~el~~~~~~g~~Gi~~~~~~~---~~~~~~~~~~~~~~~~a~~~~lpv~iH~~ 145 (288)
T 2ffi_A 86 VVMLERDV--EQATLAEMARLGVRGVRLNLMGQ---DMPDLTGAQWRPLLERIGEQGWHVELHRQ 145 (288)
T ss_dssp BBCCCSSC--CHHHHHHHHTTTCCEEECCCSSS---CCCCTTSTTTHHHHHHHHHHTCEEEECSC
T ss_pred EEEeCCCC--CHHHHHHHHHCCCeEEEEecccC---CCCCcccHHHHHHHHHHHHCCCeEEEeec
Confidence 12233222 24778888888999997654332 11234567899999999999999999984
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00015 Score=67.79 Aligned_cols=229 Identities=13% Similarity=0.073 Sum_probs=124.8
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCC-------------------------CHH----HH
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI-------------------------STE----TL 150 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~-------------------------~~~----~~ 150 (507)
+||+|+|+... .....+.+-+.||...+..+. .+... ... ..
T Consensus 4 ~iD~H~Hl~~~-------~~~~l~~m~~~Gv~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~n 74 (272)
T 3cjp_A 4 IIDGHTHVILP-------VEKHIKIMDEAGVDKTILFST--SIHPETAVNLRDVKKEMKKLNDVVNGKTNSMIDVRRNSI 74 (272)
T ss_dssp CEEEEEECCSS-------HHHHHHHHHHHTCCEEEEECC--SCCGGGCCSHHHHHHHHHHHHHHHTTSSTTCHHHHHHHH
T ss_pred EEEehhhcCCC-------HHHHHHHHHHcCCCEEEEeCC--CCCccccchhhhhhhhhhcccccccCCchhhHHHHHhhH
Confidence 79999998753 355666778899999887642 22100 001 11
Q ss_pred HHHHHHHhcCceeeEEEeccccCCC--cccHHHHHHHH-HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhc-CCc
Q 010547 151 KLKVDAAEKRIYVDVGFWGGLVPEN--AYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRP 226 (507)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-~~~ 226 (507)
....+.+..... .+...+...... +...++++++. +.|..+++.+.. +. . ..+.+..+++.|+++ +++
T Consensus 75 ~~~~~~~~~~p~-~~~~~g~~p~~~~~~~~~~el~~~~~~~g~~gi~~~g~----~~--~-~~~~~~~~~~~a~~~~~lp 146 (272)
T 3cjp_A 75 KELTNVIQAYPS-RYVGFGNVPVGLSENDTNSYIEENIVNNKLVGIGELTP----AS--G-QIKSLKPIFKYSMDSGSLP 146 (272)
T ss_dssp HHHHHHHHHSTT-TEEEEECCCTTCCHHHHHHHHHHHTTTTTCSEEEEECC----CT--T-CGGGGHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCC-eEEEEEEeCCCCCcHHHHHHHHHHHHhcCceEEEecCC----CC--C-ccHHHHHHHHHHHhccCCc
Confidence 222222221111 112222122222 23345666654 468889986421 11 2 567899999999999 999
Q ss_pred EEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHH
Q 010547 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 306 (507)
Q Consensus 227 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~ 306 (507)
+.+|+..... ..+...+..++++. ++.++.+.|.... ...+.++
T Consensus 147 v~iH~~~~~~-----------------------------~~~~~~~~~~l~~~------p~l~iv~~H~G~~-~~~~~~~ 190 (272)
T 3cjp_A 147 IWIHAFNPLV-----------------------------LQDIKEIAELCKAF------PKVPVILGHMGGS-NWMTAVE 190 (272)
T ss_dssp EEECCSTTCC-----------------------------HHHHHHHHHHHHHS------TTSCEEEGGGGGG-GHHHHHH
T ss_pred EEEeCCCCCc-----------------------------cccHHHHHHHHHHC------CCceEEEECCCCc-cHHHHHH
Confidence 9999843210 11234555566652 3567788888764 3223333
Q ss_pred HHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccc
Q 010547 307 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 386 (507)
Q Consensus 307 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~ 386 (507)
.+++. -++.+.++.. . .......+.+.+ +-.+.+|||+.-....
T Consensus 191 ~~~~~-~~~y~~~s~~---------------------~-~~~~~~~~~~~~--~dril~gSD~P~~~~~----------- 234 (272)
T 3cjp_A 191 LAKEI-QNLYLDTSAY---------------------F-STFVLKIVINEL--PLKCIFGTDMPFGDLQ----------- 234 (272)
T ss_dssp HHHHC-TTEEEECTTC---------------------S-CHHHHHHHHHHS--TTTEECCCCTTSSCHH-----------
T ss_pred HHHhC-CCEEEEeccc---------------------c-cHHHHHHHHHhC--CCeEEEeCCCCCCChH-----------
Confidence 33332 1233332210 0 111222333333 4678899997532211
Q ss_pred cCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCC
Q 010547 387 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 387 ~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~ 430 (507)
.........+++.++.-+....|+++++|++
T Consensus 235 -------------~~~~~~~~~~l~~~~~~~i~~~Na~rl~~l~ 265 (272)
T 3cjp_A 235 -------------LSIEAIKKMSNDSYVANAVLGDNISRLLNIE 265 (272)
T ss_dssp -------------HHHHHHHHHCSSHHHHHHHHTHHHHHHHTC-
T ss_pred -------------HHHHHHHhcCCCHHHHHHHHHHHHHHHhCcc
Confidence 1122233468999999999999999999983
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0002 Score=68.86 Aligned_cols=164 Identities=17% Similarity=0.084 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceE
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 290 (507)
+.+++.++.|++.++++.+|+..... +. +.++++++.+. ...++
T Consensus 173 ~~f~aq~~lA~~~glPViiH~~~gr~-------------------------------a~-~~~~iL~~~~~----~~~~~ 216 (339)
T 3gtx_A 173 LFFRAAARVQRETGVPIITHTQEGQQ-------------------------------GP-QQAELLTSLGA----DPARI 216 (339)
T ss_dssp HHHHHHHHHHHHHCCCEEEECSTTCC-------------------------------HH-HHHHHHHHTTC----CGGGE
T ss_pred HHHHHHHHHHHHHCCeEEEeCCCCcC-------------------------------HH-HHHHHHHHcCC----CcccE
Confidence 45778889999999999999943111 11 23555555311 12346
Q ss_pred EEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEeCC
Q 010547 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSD 368 (507)
Q Consensus 291 ~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lgtD 368 (507)
.+.|+... .+.+..+++.+.|..+.+..... +. +...| ........+.++++++. .+.+.||
T Consensus 217 vi~H~~~~-~~~e~a~~~l~~G~~i~~~g~~t------~~-------~~~~p--~~~~~~~~l~~li~~~~~drilleTD 280 (339)
T 3gtx_A 217 MIGHMDGN-TDPAYHRETLRHGVSIAFDRIGL------QG-------MVGTP--TDAERLSVLTTLLGEGYADRLLLSHD 280 (339)
T ss_dssp EECCGGGC-CCHHHHHHHHTTTCEEEECCTTC------CS-------STTCC--CHHHHHHHHHHHHHTTCGGGEEECCC
T ss_pred EEEccCCC-CCHHHHHHHHHcCcEEEEccCcc------cc-------ccCCC--chHHHHHHHHHHHHhcCCCeEEEecC
Confidence 77899832 45788888888898776642110 00 00001 01134456677777764 4689999
Q ss_pred CCCCChhhhccccCCccc-cCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 010547 369 HSPTVPELKLLDEGNFLK-AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lg 428 (507)
..-....... ..+... ...+..+....+......+...|++.+++.++.|.||+++|+
T Consensus 281 ~p~~~~~~P~--~~p~~~~~~~g~n~p~~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 281 SIWHWLGRPP--AIPEAALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp CEEEESSSCC--CCCGGGHHHHHTCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred CCccccCCcc--cccccccccCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 6521000000 000000 000112223333444455677899999999999999999986
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00016 Score=69.41 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=76.2
Q ss_pred ecceeecccccCCCCCCC-------C----------CCh-hHHHHHHHhCCceEEEeCCCCCCCCC---CCH--------
Q 010547 97 MPGLIDVHAHLDDPGRTE-------W----------EGF-PSGTKAAAAGGITTLIDMPLNSDPST---IST-------- 147 (507)
Q Consensus 97 ~PGfID~H~H~~~~~~~~-------~----------~~~-~~~~~~~l~~GvTt~~~~~~~~~p~~---~~~-------- 147 (507)
|+++||+|+|+....... . .+. ......+-+.||...+..+ +.|.. ...
T Consensus 1 m~~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~--~~p~~~~~~d~~~~~~~~~ 78 (327)
T 2dvt_A 1 MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSL--NAPAVQAIPDRRKAIEIAR 78 (327)
T ss_dssp CCSEEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEE--CSSGGGGCCCHHHHHHHHH
T ss_pred CCCeEEEecccCCHHHHHHHhccCCcccccccchhcCChhHHHHHHhhhcCCcEEEEeC--CCCcccccCChHHHHHHHH
Confidence 578999999996532110 0 023 5566777889999887653 12211 111
Q ss_pred HHHHHHHHHHhcCceeeEEEeccccCCCc-ccHHHHHHHHH-cCCcEEEEcccCCCC--CCCCCCCHHHHHHHHHHHHhc
Q 010547 148 ETLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLN-AGVLGLKSFMCPSGI--NDFPMTNASHIKEGLSVLARY 223 (507)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~a~~~ 223 (507)
..-....+....... .+...+++....+ ...++++++.+ .|..+++........ ........+.+..+++.|.++
T Consensus 79 ~~n~~~~~~~~~~p~-r~~~~~~v~p~~~~~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 157 (327)
T 2dvt_A 79 RANDVLAEECAKRPD-RFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKL 157 (327)
T ss_dssp HHHHHHHHHHHHCTT-TEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-ceEEEeecCcCCHHHHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHc
Confidence 111122222221111 1223334444433 35677888765 599999865432100 001245667899999999999
Q ss_pred CCcEEEecCC
Q 010547 224 KRPLLVHAEM 233 (507)
Q Consensus 224 ~~~v~~H~~~ 233 (507)
+++|.+|+..
T Consensus 158 ~lpv~iH~~~ 167 (327)
T 2dvt_A 158 DVPFYLHPRN 167 (327)
T ss_dssp TCCEEEECCC
T ss_pred CCeEEECCCC
Confidence 9999999854
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00013 Score=71.14 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 210 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
++.+..+++.|+++|.++.+|+.+... ..|. ..+...+.+ . |..
T Consensus 214 ~~~~~~~~~~A~~~gl~~~~HagE~~~----------------------~~~~----~~i~~al~~---l-------g~~ 257 (371)
T 2pgf_A 214 LKEYKEIFDYVRESGVPLSVHAGEDVT----------------------LPNL----NTLYSAIQV---L-------KVE 257 (371)
T ss_dssp GGGGHHHHHHHHHTTCCBEEEESCCTT----------------------SSSS----HHHHHHHHT---S-------CCS
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCCCC----------------------CCch----HHHHHHHhc---c-------CCC
Confidence 778999999999999999999954310 0010 122222221 1 222
Q ss_pred EEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCC
Q 010547 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 369 (507)
Q Consensus 290 ~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~ 369 (507)
.+.|+....+..++++.+++.|+.+. +||..-... +.. + .....++.++++.|+++++|||.
T Consensus 258 -ri~Hgv~l~~~~~l~~~l~~~~i~v~--~cP~SN~~l-------~~~----~----~~~~~pi~~ll~~Gv~V~lgTD~ 319 (371)
T 2pgf_A 258 -RIGHGIRVAESQELIDMVKEKNILLE--VCPISNVLL-------KNA----K----SMDTHPIRQLYDAGVKVSVNSDD 319 (371)
T ss_dssp -EEEECGGGGGCHHHHHHHHHTTCEEE--ECHHHHHHT-------TSS----S----CGGGCTHHHHHHTTCEEEECCBC
T ss_pred -EEecchhccccHHHHHHHHHcCCeEE--ECcchhHHh-------CCC----C----ccccChHHHHHHCCCeEEEeCCC
Confidence 46777654344556888888887654 477421111 000 0 00112467889999999999996
Q ss_pred CCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC
Q 010547 370 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lgl 429 (507)
..+.. .. +...+..+ ...+++++++ +.+|.|++++..+
T Consensus 320 ~~~~~-~~--------------------l~~e~~~a~~~~~l~~~~l-~~lt~ns~~asf~ 358 (371)
T 2pgf_A 320 PGMFL-TN--------------------INDDYEELYTHLNFTLEDF-MKMNEWALEKSFM 358 (371)
T ss_dssp HHHHT-CC--------------------HHHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCS
T ss_pred CcccC-CC--------------------HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHcC
Confidence 53211 11 32333333 3469999996 8889999999887
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00012 Score=67.66 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=87.4
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCC-CCH----HHHHHHHH----HHhcCceeeEEEecc
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST-IST----ETLKLKVD----AAEKRIYVDVGFWGG 170 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~-~~~----~~~~~~~~----~~~~~~~~~~~~~~~ 170 (507)
+||+|+|+.... +. ....+.+.||+.++..+ +.+.. ... +.+....+ .+... ...+....|
T Consensus 2 ~iDtH~Hld~~~------~~-~l~~a~~~GV~~~i~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~-~~~v~~~~G 71 (261)
T 3guw_A 2 YFDSHLHSEGLG------FS-ELVKLKENGIKEVCSLA--FFPVKPKYPQTMIDVFRKLTEFEPLRCEAA-GVKMHPAVG 71 (261)
T ss_dssp CCBCCCCGGGCC------HH-HHHHHHTTSCCEECCBC--CCSSCCSSHHHHHHHHHHHHHTHHHHHHTT-TCEECCBCC
T ss_pred eEEeccCCCCCC------hH-HHHHHHHCCCcEEEEec--cCccccchhhhHHHHHHHHHHHHHHHHHHC-CCCEEEEEE
Confidence 799999998643 22 35677899999998654 22221 111 22223321 12211 112333333
Q ss_pred ccCCCc-ccH-HHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcC
Q 010547 171 LVPENA-YNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 248 (507)
Q Consensus 171 ~~~~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~ 248 (507)
+.+... ... +.++.+.+..+.+++.. |-+.......+.+++.+++|+++++|+.+|+.....
T Consensus 72 iHP~~~~~~~~~~~~~l~~~~vvaIGEi----GLD~~~~~Q~~~f~~ql~lA~e~~lPv~iH~r~~~~------------ 135 (261)
T 3guw_A 72 IHPRCIPPDYEFVLGYLEEGEWVAFGEI----GLELVTDEEIEVLKSQLELAKRMDVPCIIHTPRGNK------------ 135 (261)
T ss_dssp CCGGGCCTTTHHHHHHHTTSCCSCEEEE----ECSSCCHHHHHHHHHHHHHHHHHTCCEEEECCSSST------------
T ss_pred ECcccccccHHHHHHHhCcCCeEEEEEe----cCCCChHHHHHHHHHHHHHHHHhCCeEEEEcCCCcc------------
Confidence 433221 112 23333333344455431 002111223345888999999999999999954210
Q ss_pred CccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEec
Q 010547 249 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 319 (507)
Q Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~ 319 (507)
..+..++++++++.+. +..+..+.|++. +.++.+.+.|..+++..
T Consensus 136 -----------------~~a~~~~~~il~~~~~----~~~~~vi~H~~~-----~~a~~~l~~G~yis~~~ 180 (261)
T 3guw_A 136 -----------------LKATRKTLEILESLDF----PADLAVIDHVNF-----ETLDMVLETEYWIGLTV 180 (261)
T ss_dssp -----------------THHHHHHHHHHHHTTC----CTTSEEEESCCT-----TTHHHHHTSSSEEEEEC
T ss_pred -----------------cchHHHHHHHHHHcCC----CCCCEEEEeCCH-----HHHHHHHhCCEEEEecC
Confidence 1233567777776411 112355678843 25566667888776653
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0012 Score=63.66 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce
Q 010547 210 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289 (507)
Q Consensus 210 ~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~ 289 (507)
...+++..+.+++.|.|+.+|+..... .. +.++++.+.+. ...+
T Consensus 192 ~k~frA~a~aa~etG~Pv~iHt~~~~~----------------------------~~----e~l~iL~eeG~----~~~~ 235 (360)
T 3tn4_A 192 KMFFRAAARAQKETGAVIITHTQEGTM----------------------------GP----EQAAYLLEHGA----DPKK 235 (360)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSTTCC----------------------------HH----HHHHHHHHTTC----CGGG
T ss_pred HHHHHHHHHHHHHhCCcEEEEcCcccC----------------------------CH----HHHHHHHHcCC----CCCc
Confidence 345888999999999999999954321 11 22233333210 1235
Q ss_pred EEEEec-CChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEe
Q 010547 290 LHIVHL-SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLS 366 (507)
Q Consensus 290 ~~~~h~-~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lg 366 (507)
+.+.|+ .+ ...+..+++.+.|..+.++.... +.. . ..| .+......+.+++++|- .+.++
T Consensus 236 vvi~H~~~~--~d~~~~~~~l~~G~yl~fD~iG~------~~~------~-~~p--~d~~r~~~l~~lv~~g~~drILLs 298 (360)
T 3tn4_A 236 IVIGHMCDN--TDPDYHRKTLAYGVYIAFDRFGI------QGM------V-GAP--TDEERVRTLLALLRDGYEKQIMLS 298 (360)
T ss_dssp EEECCGGGC--CCHHHHHHHHTTTCEEEECCTTC------CCS------T-TCC--CHHHHHHHHHHHHHTTCGGGEEEC
T ss_pred eEEEcCCCC--CCHHHHHHHHHcCCEEEEccccc------ccc------c-CCC--ChHHHHHHHHHHHHhcCcceEEEe
Confidence 788895 55 56677888888998777653210 000 0 000 12344556777777774 57899
Q ss_pred CCCC------CCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 010547 367 SDHS------PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 427 (507)
Q Consensus 367 tD~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~l 427 (507)
+|.. ++..... +....++ .++...+.......++.|+|.+++-++.+.||+++|
T Consensus 299 tDa~~~~~~~py~~p~p------~r~~~~~-~~y~~i~~~~ip~L~~~Gvs~e~I~~i~~~NP~rlf 358 (360)
T 3tn4_A 299 HDTVNVWLGRPFTLPEP------FAEMMKN-WHVEHLFVNIIPALKNEGIRDEVLEQMFIGNPAALF 358 (360)
T ss_dssp CCCEEEESSSCCCCCHH------HHHHTTT-CSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHH
T ss_pred cCCCcccccCCCCCccc------ccccCCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHh
Confidence 9962 2211100 0000011 112222333344556789999999999999999987
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0013 Score=62.44 Aligned_cols=150 Identities=10% Similarity=0.011 Sum_probs=87.3
Q ss_pred eeecccccCCCC-----CC--------CCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEE
Q 010547 100 LIDVHAHLDDPG-----RT--------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166 (507)
Q Consensus 100 fID~H~H~~~~~-----~~--------~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 166 (507)
.||+|.|+.... +. ..-........+-+.||+.++... +. ..........+.++... .+.
T Consensus 5 ~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~----~~-~~~~~n~~l~~la~~~p--~~~ 77 (303)
T 4do7_A 5 RIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQ----AR-AGRDETAFLLELACDEA--RIA 77 (303)
T ss_dssp CEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEEC----CS-SSHHHHHHHHHHHTTCT--TEE
T ss_pred EEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEc----cC-CcHHHHHHHHHHHHhCC--CeE
Confidence 499999998642 11 011244556677789999988653 11 12333333444333322 222
Q ss_pred Eecc-ccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhc
Q 010547 167 FWGG-LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP--MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 243 (507)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~ 243 (507)
...+ .....++..++++++...|..|++...... ..+ ....+.+...++.++++|+++.+|+...
T Consensus 78 g~vg~v~~~~~~~~~~L~~l~~~gv~Gir~~~~~~---~~~~~~~~~~~~~~~~~~~~~~glpv~ih~~~~--------- 145 (303)
T 4do7_A 78 AVVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDE---ADVRAFVDDADFARGVAWLQANDYVYDVLVFER--------- 145 (303)
T ss_dssp EEEECCCTTCTTHHHHHTTCCSSCEEEEECCGGGS---SCHHHHHHCHHHHHHHHHHHHTTCEEEECCCGG---------
T ss_pred EEEEEeCCCCchHHHHHHHHhhcCceEEEecCcCC---CCccccccCHHHHHHHHHHHHCCCeEEEecCHH---------
Confidence 2222 222333345666666666888888643211 001 1344678899999999999999998432
Q ss_pred ccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 010547 244 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 298 (507)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~ 298 (507)
.+..+.+++++ .++.++.+.|+...
T Consensus 146 ------------------------~l~~l~~ll~~------~P~l~iVi~H~G~p 170 (303)
T 4do7_A 146 ------------------------QLPDVQAFCAR------HDAHWLVLDHAGKP 170 (303)
T ss_dssp ------------------------GHHHHHHHHHH------CCSSCEEEGGGGCC
T ss_pred ------------------------HHHHHHHHHHH------CCCCCEEEeCCCCC
Confidence 12455666665 34788999999763
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0018 Score=61.34 Aligned_cols=129 Identities=13% Similarity=0.049 Sum_probs=72.8
Q ss_pred ceeecccccCCCCCC----------------CCCChhHHHHHHHhCCceEEEeCCCCCCCCC--CCH--------HHHHH
Q 010547 99 GLIDVHAHLDDPGRT----------------EWEGFPSGTKAAAAGGITTLIDMPLNSDPST--IST--------ETLKL 152 (507)
Q Consensus 99 GfID~H~H~~~~~~~----------------~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~--~~~--------~~~~~ 152 (507)
.+||+|+|+...... ...+.......+-+.||...+..+. .|.. ... ..-..
T Consensus 2 ~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~--~~~~~~~~~~~~~~~~~~~n~~ 79 (307)
T 2f6k_A 2 SKIDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILSLS--SPHVNFGDKAETIRLVEAANDD 79 (307)
T ss_dssp CEEEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEECC--SSCSCSSCHHHHHHHHHHHHHH
T ss_pred CeEEEecCcCCHHHHHHHHHhccCCcccCcCCCCCHHHHHHHHHHcCCCEEEEeCC--CcccccCCHHHHHHHHHHHHHH
Confidence 379999998653210 1134566677788999999776531 1211 111 11111
Q ss_pred HHHHHhcCceeeEEEeccccCCC-cccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEe
Q 010547 153 KVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 230 (507)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H 230 (507)
..+....... .+...+.+.... +...++++++.+ .|..+++......+ .....+.+..+++.|.++++++.+|
T Consensus 80 ~~~~~~~~p~-r~~~~~~~p~~~~~~~~~el~~~~~~~g~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~lpv~iH 154 (307)
T 2f6k_A 80 GKSLAQQYPD-QLGYLASLPIPYELDAVKTVQQALDQDGALGVTVPTNSRG----LYFGSPVLERVYQELDARQAIVALH 154 (307)
T ss_dssp HHHHHHHCTT-TEEEEECCCTTCHHHHHHHHHHHHHTSCCSEEEEESEETT----EETTCGGGHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhCcc-ceeEEEeCCCCCHHHHHHHHHHHHhccCCcEEEEeccCCC----CCCCcHhHHHHHHHHHHcCCeEEEC
Confidence 2222221111 122222222122 345677777774 69999977543211 1234578999999999999999999
Q ss_pred cCCc
Q 010547 231 AEME 234 (507)
Q Consensus 231 ~~~~ 234 (507)
+...
T Consensus 155 ~~~~ 158 (307)
T 2f6k_A 155 PNEP 158 (307)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0014 Score=63.47 Aligned_cols=160 Identities=13% Similarity=0.039 Sum_probs=92.5
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHH
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (507)
.++.|+...-.. .+.|....+.+..+++.|++.|.++.+|+.+... ..
T Consensus 172 ~~vvG~dL~g~E---~~~~~~~~~~f~~~f~~A~~~gl~~~~HagE~~~-----------------------------~~ 219 (367)
T 3iar_A 172 QTVVAIDLAGDE---TIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGS-----------------------------AE 219 (367)
T ss_dssp TTEEEEEEESCT---TSTTGGGCHHHHHHHHHHHHHTCEEEEEESSSSC-----------------------------HH
T ss_pred CCEEEEcCCCcc---cCCCcchHHHHHHHHHHHHHcCCeeEEecCCcCC-----------------------------hH
Confidence 567777763211 1111101268899999999999999999954321 11
Q ss_pred HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh
Q 010547 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347 (507)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (507)
.+...+..+ +. -.+.|........+.++.+++.++.+. +||..-.... . .+.+
T Consensus 220 ~i~~al~~l----------g~-~RIgHgv~l~~d~~l~~~l~~~~i~le--~cP~SN~~l~-----~------~~~~--- 272 (367)
T 3iar_A 220 VVKEAVDIL----------KT-ERLGHGYHTLEDQALYNRLRQENMHFE--ICPWSSYLTG-----A------WKPD--- 272 (367)
T ss_dssp HHHHHHHTS----------CC-SEEEECGGGGGCHHHHHHHHHTTCEEE--ECHHHHHHTS-----S------SCTT---
T ss_pred HHHHHHHcc----------CC-ceeeeeeeecCCHHHHHHHHhCCcEEE--ECHHHHHHhC-----C------CCCc---
Confidence 222333211 21 136777654234567888888887654 4774211110 0 0011
Q ss_pred hhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHH
Q 010547 348 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKL 426 (507)
Q Consensus 348 ~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~ 426 (507)
...++.++++.|++++++||....... .+...+..+ ...|+++++ ++.+|.|++++
T Consensus 273 -~~hPi~~ll~~Gv~v~l~TDdp~~~~~---------------------~l~~e~~~a~~~~glt~~e-l~~l~~nsi~~ 329 (367)
T 3iar_A 273 -TEHAVIRLKNDQANYSLNTDDPLIFKS---------------------TLDTDYQMTKRDMGFTEEE-FKRLNINAAKS 329 (367)
T ss_dssp -SCCHHHHHHHTTCCEEECCBSHHHHTC---------------------CHHHHHHHHHHHHCCCHHH-HHHHHHHHHHT
T ss_pred -ccChHHHHHHCCCEEEECCCCccccCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHH
Confidence 112567889999999999996532110 033333333 456999999 66678999987
Q ss_pred hCC
Q 010547 427 AGQ 429 (507)
Q Consensus 427 lgl 429 (507)
..+
T Consensus 330 sf~ 332 (367)
T 3iar_A 330 SFL 332 (367)
T ss_dssp SSS
T ss_pred hCC
Confidence 766
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.02 Score=53.66 Aligned_cols=231 Identities=9% Similarity=-0.009 Sum_probs=124.5
Q ss_pred hhHHHHHHHhCCceEEEeCCCCCCCCC--CCHHHHHHHHHHHhcCceeeEEEeccccCCC-cccHHHHHHHHHcCCcEEE
Q 010547 118 FPSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLK 194 (507)
Q Consensus 118 ~~~~~~~~l~~GvTt~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~ 194 (507)
.......+-+.||...+..+.. .+.. ...+.+.+..+...++ +...+++.... +...++++++...|..|++
T Consensus 49 ~e~~l~~md~~GV~~~V~~~~~-~~~~~~~~N~~~~~~~~~~p~r----~~~~~~v~p~~~~~a~~eL~~~~~~g~~Gi~ 123 (291)
T 3irs_A 49 LELMFEEMAAAGIEQGVCVGRN-SSVLGSVSNADVAAVAKAYPDK----FHPVGSIEAATRKEAMAQMQEILDLGIRIVN 123 (291)
T ss_dssp HHHHHHHHHHTTCCEEEEECCE-ETTTEECCHHHHHHHHHHSTTT----EEEEEECCCSSHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHCCCCEEEEcCCC-ccccccccHHHHHHHHHHCCCc----EEEEEecCccCHHHHHHHHHHHHhCCCeEEE
Confidence 4455667788999988866411 1111 2344444443322222 22223344443 3456777776678999999
Q ss_pred EcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHH
Q 010547 195 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 274 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 274 (507)
.+....+ .......+.+..+++.|.+++++|.+|+..... .. ..... ...+..
T Consensus 124 ~~~~~~~--~~~~~~d~~~~~~~~~a~e~glpv~iH~~~~~~-------------~~---------~~~~~---p~~~~~ 176 (291)
T 3irs_A 124 LEPGVWA--TPMHVDDRRLYPLYAFCEDNGIPVIMMTGGNAG-------------PD---------ITYTN---PEHIDR 176 (291)
T ss_dssp ECGGGSS--SCCCTTCGGGHHHHHHHHHTTCCEEEECSSSCS-------------SS---------GGGGC---HHHHHH
T ss_pred EeCCCCC--CCCCCCCHHHHHHHHHHHHcCCeEEEeCCCCCC-------------CC---------CccCC---HHHHHH
Confidence 8643211 011346678999999999999999999954310 00 00000 123444
Q ss_pred HHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHH
Q 010547 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLW 354 (507)
Q Consensus 275 l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 354 (507)
++++ .+..++.+.|+... ...+.++.+.+. -++.+.++... ...| . ...+.
T Consensus 177 v~~~------~P~l~ivl~H~G~~-~~~~~~~l~~~~-~nvy~~~Sg~~---------------~~~~---~---~~~~~ 227 (291)
T 3irs_A 177 VLGD------FPDLTVVSSHGNWP-WVQEIIHVAFRR-PNLYLSPDMYL---------------YNLP---G---HADFI 227 (291)
T ss_dssp HHHH------CTTCCEEEEGGGTT-CHHHHHHHHHHC-TTEEEECGGGG---------------SSST---T---HHHHH
T ss_pred HHHH------CCCCEEEeecCCcc-cHHHHHHHHhHC-CCeEecHHHHh---------------ccCC---C---HHHHH
Confidence 5554 34778889998753 333333333221 12333322100 0001 1 12233
Q ss_pred HHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CC
Q 010547 355 EALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VS 431 (507)
Q Consensus 355 ~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl-~~ 431 (507)
+.++. | -.+.+|||+.-... ........+.+++.++.-+..+.|+++++++ .+
T Consensus 228 ~~~~~~g~drllfgSD~P~~~~------------------------~~~~~~~~~l~l~~e~~~~i~~~NA~rl~~~~~~ 283 (291)
T 3irs_A 228 QAANSFLADRMLFGTAYPMCPL------------------------KEYTEWFLTLPIKPDAMEKILHGNAERLLAQAGR 283 (291)
T ss_dssp HHHTTGGGGTBCCCCCBTSSCH------------------------HHHHHHHHTSSCCHHHHHHHHTHHHHHHHHHSCC
T ss_pred HHHHHhCcceEEEecCCCCCCH------------------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHhCcccc
Confidence 33332 2 24679999653321 1123334455899999999999999999998 43
Q ss_pred CC
Q 010547 432 KG 433 (507)
Q Consensus 432 ~G 433 (507)
-|
T Consensus 284 ~~ 285 (291)
T 3irs_A 284 EG 285 (291)
T ss_dssp --
T ss_pred cc
Confidence 34
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.003 Score=61.33 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=31.3
Q ss_pred cceeecccccCCCCCC--------CCCChhHHHHHHHhCCceEEEeCC
Q 010547 98 PGLIDVHAHLDDPGRT--------EWEGFPSGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 98 PGfID~H~H~~~~~~~--------~~~~~~~~~~~~l~~GvTt~~~~~ 137 (507)
+-|||+|+|+....+. ..+++......+...||..++..+
T Consensus 12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g 59 (401)
T 3e2v_A 12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTG 59 (401)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC
T ss_pred CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEec
Confidence 5799999999875432 235678888999999999998654
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0018 Score=62.17 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=95.6
Q ss_pred HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHH
Q 010547 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266 (507)
Q Consensus 187 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (507)
..++.|+...- .+ ...+++.+..+++.|++.|.++.+|+.+... .
T Consensus 162 ~~~vvG~dL~g-----~E-~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~-----------------------------~ 206 (343)
T 3rys_A 162 HAPIAGIGLDS-----AE-VGNPPSKFERLYQRAAEAGLRRIAHAGEEGP-----------------------------A 206 (343)
T ss_dssp TCCCCEEEEES-----CC-TTCCGGGGHHHHHHHHHTTCEEEEEESSSSC-----------------------------H
T ss_pred CCCEEEEecCC-----cc-cCCCHHHHHHHHHHHHHCCCeEEEeeCCCCC-----------------------------H
Confidence 35677877632 11 1345678899999999999999999954321 1
Q ss_pred HHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCC
Q 010547 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346 (507)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (507)
..+...+.++ |. -.+.|.....+..+.++.+++.++.+.. ||..-.... . .+.
T Consensus 207 ~~i~~al~~l----------g~-~rIgHgv~l~~d~~l~~~l~~~~i~le~--cP~SN~~l~-------~----~~~--- 259 (343)
T 3rys_A 207 SYITEALDVL----------HV-ERIDHGIRCMEDTDVVQRLVAEQVPLTV--CPLSNVRLR-------A----VDK--- 259 (343)
T ss_dssp HHHHHHHHTS----------CC-SEEEECGGGGGCHHHHHHHHHHTCCEEE--CHHHHHHTT-------S----SSC---
T ss_pred HHHHHHHhcC----------Cc-ceeeeeeeecCChHHHHHHHhcCCCeeE--chhHHHHhC-------C----CCC---
Confidence 2233333321 11 1366776542335678888888877654 764211110 0 000
Q ss_pred hhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhH
Q 010547 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAK 425 (507)
Q Consensus 347 ~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~ 425 (507)
....++.+++++|++++++||...+.... +...+.. +...+++++++ +.++.|+++
T Consensus 260 -~~~hPi~~ll~~Gv~V~l~TDdp~~~~~~---------------------l~~E~~~a~~~~~l~~~~l-~~l~~nsi~ 316 (343)
T 3rys_A 260 -LADHPLPEMLAIGLNVCVNSDDPAYFGGY---------------------VDDNFEQLVKVLEFSVPEQ-ATLAANSIR 316 (343)
T ss_dssp -GGGCSHHHHHHTTCCEEECCBSTTTTTCC---------------------HHHHHHHHHHHHCCCHHHH-HHHHHHHHH
T ss_pred -cccchHHHHHHCCCeEEEeCCCccccCCC---------------------HHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 01124678889999999999976543321 3333333 34469999995 667899998
Q ss_pred HhCC
Q 010547 426 LAGQ 429 (507)
Q Consensus 426 ~lgl 429 (507)
+..+
T Consensus 317 ~sf~ 320 (343)
T 3rys_A 317 SSFA 320 (343)
T ss_dssp HSSS
T ss_pred HHCC
Confidence 8776
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00084 Score=63.97 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=91.8
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHH
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (507)
.++.|+...- .+ ...+++.+.++++.|++.|.++.+|+.+... ..
T Consensus 160 ~~vvG~dL~g-----~E-~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~-----------------------------~~ 204 (326)
T 3pao_A 160 DAFIAVGLDS-----SE-VGHPPSKFQRVFDRARSEGFLTVAHAGEEGP-----------------------------PE 204 (326)
T ss_dssp GGCSEEEEES-----CC-TTCCGGGGHHHHHHHHHTTCEECEEESSSSC-----------------------------HH
T ss_pred ccceeeCCCC-----CC-CCCCHHHHHHHHHHHHHcCCceeeecCCCCC-----------------------------HH
Confidence 3677776632 11 1245678899999999999999999954321 12
Q ss_pred HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh
Q 010547 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347 (507)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (507)
.+...++.+. . -.+.|.....+..+.++.+++.++.+.. ||..-.... . .+.
T Consensus 205 ~i~~al~~lg----------~-~rigHgv~l~~d~~l~~~l~~~~i~le~--cP~SN~~l~------~-----~~~---- 256 (326)
T 3pao_A 205 YIWEALDLLK----------V-ERIDHGVRAFEDERLMRRLIDEQIPLTV--CPLSNTKLC------V-----FDD---- 256 (326)
T ss_dssp HHHHHHHTTC----------C-SSEEECGGGGGCHHHHHHHHHHTCCEEE--CHHHHHHTT------S-----SSS----
T ss_pred HHHHHHhcCC----------C-ceeeeeeeecccHHHHHHHHHcCCeEEE--CchhHHHhC------C-----CCC----
Confidence 2333333211 1 1256665532335677888888877654 764211110 0 000
Q ss_pred hhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHH
Q 010547 348 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL 426 (507)
Q Consensus 348 ~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~ 426 (507)
....++.+++++|++++++||...+... . +...+.. +...|++++++ +.+|.|++++
T Consensus 257 ~~~hPi~~ll~~Gv~V~l~TDdp~~~~~-~--------------------l~~e~~~a~~~~~l~~~~l-~~l~~nsi~~ 314 (326)
T 3pao_A 257 MSQHTILDMLERGVKVTVNSDDPAYFGG-Y--------------------VTENFHALQQSLGMTEEQA-RRLAQNSLDA 314 (326)
T ss_dssp GGGCCHHHHHHHTCCEEECCBSHHHHTC-C--------------------HHHHHHHHHHHHCCCHHHH-HHHHHHHHHT
T ss_pred cccChHHHHHHCCCeEEEeCCCcccCCC-C--------------------HHHHHHHHHHHcCCCHHHH-HHHHHHHHHH
Confidence 0112456788899999999996533211 1 3333333 34469999995 7788999887
Q ss_pred hCC
Q 010547 427 AGQ 429 (507)
Q Consensus 427 lgl 429 (507)
.-+
T Consensus 315 sf~ 317 (326)
T 3pao_A 315 RLV 317 (326)
T ss_dssp CC-
T ss_pred HHh
Confidence 554
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.024 Score=54.98 Aligned_cols=161 Identities=13% Similarity=0.042 Sum_probs=89.6
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHH
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 267 (507)
.++.|+...- ++. ..++..+..+++.|++.|.++.+|+.+... | .+
T Consensus 180 ~~VvG~dL~g-----~E~-~~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~------------------------p----~~ 225 (380)
T 4gxw_A 180 DEVAGIGIDY-----REN-DRPPELFWKAYRDARAAGFRTTAHAGEFGM------------------------P----WR 225 (380)
T ss_dssp TTBCEEEEES-----CCT-TCCGGGGHHHHHHHHHTTCEEEEEESCTTC------------------------C----HH
T ss_pred CCEEEEeecC-----CCC-CCCHHHHHHHHHHHHHcCCCeeeeccccCC------------------------c----hH
Confidence 4677887621 111 234567888999999999999999954221 1 12
Q ss_pred HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCCh
Q 010547 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347 (507)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 347 (507)
.+...++++. -. .+.|........++++.++++++.+.+ ||..-... ...|.. ..
T Consensus 226 ~i~~al~~lg---------a~--RIgHG~~~~~d~~L~~~l~~~~I~lEv--CP~SN~~l-----------~~v~~~-~~ 280 (380)
T 4gxw_A 226 NVETAVDLLH---------VD--RVDHGYTIVDNPELCARYAERGIVFTV--VPTNSYYL-----------RTLPPD-QW 280 (380)
T ss_dssp HHHHHHHTSC---------CS--EEEECGGGGGCHHHHHHHHHHTCEEEE--CTTCHHHH-----------HHSCTT-TH
T ss_pred HHHHHHHHcC---------Cc--ccccceeeccChHHHHHHHHhCceeEE--CCcchhhh-----------cccccc-cc
Confidence 3344444322 11 344544322456678888888876544 77321110 000000 00
Q ss_pred hhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHH
Q 010547 348 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL 426 (507)
Q Consensus 348 ~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~ 426 (507)
...-++..+++.|++++++||...... ..+...+.. ....|++.+++.+ .+.|+.++
T Consensus 281 ~~~HP~~~l~~~Gv~vtinTDDp~~f~---------------------t~Ls~Ey~~~~~~~gls~~dl~~-l~~nsi~~ 338 (380)
T 4gxw_A 281 AERHPMRKMPGLGLKIHPNTDDPTLHK---------------------VNPSEAWELMFSHFGFTIADLKQ-FMLNGIDG 338 (380)
T ss_dssp HHHCGGGGTGGGTCEEEECCBSHHHHT---------------------CCHHHHHHHHHHTSCCCHHHHHH-HHHHHHHH
T ss_pred cccChHHHHHHCCCeEEECCCCchhhC---------------------CCHHHHHHHHHHHhCcCHHHHHH-HHHHHHHH
Confidence 111135677889999999999653211 013333333 4567999998766 55777766
Q ss_pred hCC
Q 010547 427 AGQ 429 (507)
Q Consensus 427 lgl 429 (507)
--+
T Consensus 339 sF~ 341 (380)
T 4gxw_A 339 AWV 341 (380)
T ss_dssp SSS
T ss_pred HcC
Confidence 544
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.28 Score=46.22 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=39.4
Q ss_pred ccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 177 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 177 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
...+++++..+ .|..|++.+....+ ....++.+..+++.+.++|++|.+|+..
T Consensus 111 ~a~~el~r~~~~~G~~Gv~l~~~~~~----~~l~d~~~~p~~~~~~e~g~pv~iH~g~ 164 (312)
T 3ij6_A 111 SACKVISSIKDDENLVGAQIFTRHLG----KSIADKEFRPVLAQAAKLHVPLWMHPVF 164 (312)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESEETT----EETTSTTTHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCceEeccCCCCC----CCCCCccHHHHHHHHHHcCCeEEEcCCC
Confidence 35678888864 78999987543211 2345677899999999999999999843
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=47.63 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=27.3
Q ss_pred eeecccccCCCCCCCCCChh---HHHHHHHhCCceEEEeCC
Q 010547 100 LIDVHAHLDDPGRTEWEGFP---SGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~---~~~~~~l~~GvTt~~~~~ 137 (507)
+||.|+|...+......++. ..++.+.+.|++.+.-.+
T Consensus 1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~T~ 41 (262)
T 3qy7_A 1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIATP 41 (262)
T ss_dssp CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 68999999764322223344 478889999999998654
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=94.39 E-value=2.5 Score=37.99 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=28.2
Q ss_pred cceeecccccCCCC---CCCCCChhHHHHHHHhCCceEEEeCC
Q 010547 98 PGLIDVHAHLDDPG---RTEWEGFPSGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 98 PGfID~H~H~~~~~---~~~~~~~~~~~~~~l~~GvTt~~~~~ 137 (507)
.|+||.|+|...+. ..+.+......+.+.+.|++.+.-.+
T Consensus 3 ~~m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~~Td 45 (247)
T 2wje_A 3 MGMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTS 45 (247)
T ss_dssp -CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEECCC
T ss_pred CCCEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 46899999996542 22223344688899999999988654
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.19 Score=47.97 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=63.3
Q ss_pred hHHHHHHHhCCceEEEeCCCCCCC--CCCCHH-------HHHHHHHHHhcCceeeEEEeccccCCCc-ccHHHHHHHHHc
Q 010547 119 PSGTKAAAAGGITTLIDMPLNSDP--STISTE-------TLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLNA 188 (507)
Q Consensus 119 ~~~~~~~l~~GvTt~~~~~~~~~p--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 188 (507)
......+-+.||...+..+ .... .....+ .....+........-.+...+.+....+ ...++++++.+.
T Consensus 61 ~~~l~~m~~~GV~~~V~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~~~~~a~~el~~~~~~ 139 (334)
T 2hbv_A 61 AFRIEEMDAQGVDVQVTCA-TPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEASRAVAA 139 (334)
T ss_dssp HHHHHHHHHHTCSEEEEEE-CGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECC-CchhccCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEecCccCHHHHHHHHHHHHHc
Confidence 4556677789999877554 1100 011221 1112222222221112333343444332 456778877777
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 189 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
|..|++...... + ...+++.+..+++.+.++++++.+|+..
T Consensus 140 g~~Gv~l~~~~~---~-~~l~d~~~~p~~~~~~e~~lpv~iH~~~ 180 (334)
T 2hbv_A 140 GHLGIQIGNHLG---D-KDLDDATLEAFLTHCANEDIPILVHPWD 180 (334)
T ss_dssp TCCCEEEESCBT---T-BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred CCeEEEECCCCC---C-CCCCcHHHHHHHHHHHHCCCEEEECCCC
Confidence 999987754321 1 2356788999999999999999999854
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.12 Score=53.96 Aligned_cols=99 Identities=13% Similarity=0.007 Sum_probs=57.7
Q ss_pred EecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC
Q 010547 293 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (507)
Q Consensus 293 ~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~ 372 (507)
.|+........+++.+++.++.+.. ||..- ... .+.+. .-++.++++.|++++|+||....
T Consensus 542 gHGv~l~edp~Li~lla~~~I~vev--CP~SN------~kl-------~~~~~----~HPi~~ll~~Gv~VsLgTDdp~~ 602 (701)
T 2a3l_A 542 AHGINLRKSPVLQYLYYLAQIGLAM--SPLSN------NSL-------FLDYH----RNPFPVFFLRGLNVSLSTDDPLQ 602 (701)
T ss_dssp SCCGGGGGCHHHHHHHHHHTCCEEE--CHHHH------TTT-------TCCST----TCSHHHHHHTTCCEEECCBCHHH
T ss_pred EEEeecccCHHHHHHHHHcCCcEEE--Cccch------hhh-------ccCch----HhHHHHHHHCCCcEEEeCCCccc
Confidence 5554432334457777778877654 76321 100 00010 11356788999999999997644
Q ss_pred ChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 373 VPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
....+ .. |...+. .+...+++..++.++ |.|++++.++
T Consensus 603 ~~~t~-----------------~d-L~~Ey~~aa~~~~ls~~dl~~l-a~Ns~~asfl 641 (701)
T 2a3l_A 603 IHLTK-----------------EP-LVEEYSIAASVWKLSACDLCEI-ARNSVYQSGF 641 (701)
T ss_dssp HCCSS-----------------SH-HHHHHHHHHHHHTCCHHHHHHH-HHHHHHHSCC
T ss_pred cCCCC-----------------cC-HHHHHHHHHHHcCCCHHHHHHH-HHHHHHHhCC
Confidence 22100 00 222222 334457999997776 8999999998
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.2 Score=47.78 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=42.5
Q ss_pred ccccCCCc-ccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 169 GGLVPENA-YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
+.+....+ ...++++++.+ .|..|++......+ ....++.+..+++.+.++++++.+|+..
T Consensus 115 ~~l~~~~~~~a~~el~~~~~~~g~~Gv~l~~~~~~----~~l~d~~~~~~~~~~~e~~lpv~iH~~~ 177 (336)
T 2wm1_A 115 GTLPMQAPELAVKEMERCVKELGFPGVQIGTHVNE----WDLNAQELFPVYAAAERLKCSLFVHPWD 177 (336)
T ss_dssp ECCCTTSHHHHHHHHHHHHHTSCCSEEEEESEETT----EETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred EeCCCcCHHHHHHHHHHHHHccCCeEEEECCcCCC----CCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence 33444332 35677888874 69999987432211 1346678999999999999999999854
|
| >4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=7.2 Score=37.47 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=40.5
Q ss_pred cHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCc
Q 010547 178 NASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (507)
Q Consensus 178 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 234 (507)
..+++++..+. |..|++.+.... + ...+++.+..+++.+.++|++|.+|....
T Consensus 161 a~~EL~r~~~~~G~~Gv~l~~~~~---g-~~l~d~~~~pi~~~~~e~g~pV~iH~g~~ 214 (373)
T 4inf_A 161 SAREIHRGARELGFKGIQINSHTQ---G-RYLDEEFFDPIFRALVEVDQPLYIHPATS 214 (373)
T ss_dssp HHHHHHHHHHTSCCCCEEECSCBT---T-BCTTSGGGHHHHHHHHHHTCCEEECCCCC
T ss_pred HHHHHHHHHhhcCceEEEECCCCC---C-CCCCCcchHHHHHHHHHcCCeEEECCCCC
Confidence 45788888875 999999753221 1 23566789999999999999999998643
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.75 Score=46.16 Aligned_cols=126 Identities=19% Similarity=0.139 Sum_probs=69.6
Q ss_pred cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHH--HHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHH
Q 010547 188 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV--LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 265 (507)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 265 (507)
.++.|+...- .+....++..+..+++. |++.|+++.+|+.+.... + ..+
T Consensus 291 ~~VvG~DLaG-----~E~~g~p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~-----------g---------~~~---- 341 (508)
T 3lgd_A 291 TVVAGFDLVG-----HEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQ-----------G---------TSI---- 341 (508)
T ss_dssp TTEEEEEEES-----CTTTSCCTGGGHHHHTHHHHTTCCCCBCCEECCSSCC-----------S---------STT----
T ss_pred CceEEeccCC-----CCCCCCCHHHHHHHHHHHHHHHcCCceeeecccccCC-----------C---------CCc----
Confidence 4677777621 11112235667777777 888999999999543210 0 000
Q ss_pred HHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCC
Q 010547 266 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 345 (507)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 345 (507)
.+.+...+.+..+ .+.|........++++.+++.++.+.. ||..-.... . .+.
T Consensus 342 ~~~i~~Al~Lga~------------RIgHGv~l~~dp~l~~~l~~~~I~lev--CP~SN~~l~------~-----v~~-- 394 (508)
T 3lgd_A 342 DRNILDALMLNTT------------RIGHGFALSKHPAVRTYSWKKDIPIEV--CPISNQVLK------L-----VSD-- 394 (508)
T ss_dssp TTHHHHHHHTTCS------------SEEECTTGGGCHHHHHHHHHTTCCEEE--CHHHHHHTT------S-----CSS--
T ss_pred HHHHHHHHhcCCc------------eeeeeEecCccHHHHHHHHhcCCeEEE--CcchHHHhC------C-----CCC--
Confidence 1123344432111 256766543345778888888887655 663211110 0 000
Q ss_pred ChhhHHHHHHHHhcCCeeEEeCCCCC
Q 010547 346 DAANKEKLWEALMDGHIDMLSSDHSP 371 (507)
Q Consensus 346 ~~~~~~~~~~~l~~G~~~~lgtD~~~ 371 (507)
....++.++++.|++++++||...
T Consensus 395 --~~~hP~~~ll~~Gv~V~l~TDdp~ 418 (508)
T 3lgd_A 395 --LRNHPVATLMATGHPMVISSDDPA 418 (508)
T ss_dssp --GGGCTHHHHHHTTCCEEECCBSHH
T ss_pred --cccChHHHHHHCCCcEEEcCCCcc
Confidence 011245678889999999999653
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=88.21 E-value=2.1 Score=41.00 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=40.7
Q ss_pred ccHHHHHHHH-HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCc
Q 010547 177 YNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (507)
Q Consensus 177 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 234 (507)
...+++++.. +.|..|++.+.... ....+++.+..+++.+.++|++|.+|+...
T Consensus 142 ~a~~El~r~~~~~G~~Gv~l~~~~~----~~~~~d~~~~p~~~~~~e~g~pV~iH~g~~ 196 (357)
T 3nur_A 142 AAAREFERCINDLGFKGALIMGRAQ----DGFLDQDKYDIIFKTAENLDVPIYLHPAPV 196 (357)
T ss_dssp HHHHHHHHHHHTTCCCCEEEESCBT----TBCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHHHHhhcCceEEEeCCCCC----CCCCCCccHHHHHHHHHhcCCeEEEecCCC
Confidence 3567888865 58999998863221 123566789999999999999999998653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 507 | ||||
| d1nfga2 | 330 | c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pi | 1e-60 | |
| d2ftwa2 | 334 | c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas | 5e-59 | |
| d1gkpa2 | 335 | c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta | 8e-58 | |
| d2fvka2 | 384 | c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolas | 1e-57 | |
| d1kcxa2 | 334 | c.1.9.6 (A:67-400) Dihydropyrimidinase related pro | 2e-57 | |
| d1ynya2 | 332 | c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR | 6e-54 | |
| d1xrta2 | 310 | c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui | 2e-51 | |
| d1gkra2 | 325 | c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au | 8e-47 | |
| d2eg6a1 | 343 | c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli | 4e-25 | |
| d2vhla2 | 301 | c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphat | 2e-22 | |
| d1i0da_ | 331 | c.1.9.3 (A:) Phosphotriesterase (parathion hydrola | 6e-21 | |
| d1onwa2 | 284 | c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catal | 1e-20 | |
| d1xrta1 | 112 | b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorot | 2e-09 | |
| d1onwa1 | 105 | b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas | 1e-08 | |
| d1ejxc1 | 181 | b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o | 2e-08 | |
| d1kcxa1 | 142 | b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r | 5e-07 | |
| d1yrra1 | 85 | b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6- | 1e-06 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 3e-06 | |
| d1gkra1 | 126 | b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro | 3e-06 | |
| d1p1ma1 | 123 | b.92.1.4 (A:1-49,A:331-404) Hypothetical protein T | 8e-06 | |
| d1o12a2 | 288 | c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphat | 1e-05 | |
| d2icsa2 | 267 | c.1.9.14 (A:55-321) Putative adenine deaminase EF0 | 1e-05 | |
| d1gkpa1 | 123 | b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu | 4e-05 | |
| d2ftwa1 | 150 | b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid | 6e-05 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 8e-05 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 1e-04 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 3e-04 | |
| d1m7ja2 | 61 | b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydro | 3e-04 | |
| d2vhla1 | 91 | b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6- | 4e-04 | |
| d4ubpc2 | 390 | c.1.9.2 (C:132-434,C:484-570) alpha-subunit of ure | 0.001 | |
| d2fvka1 | 156 | b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid | 0.004 | |
| d1yrra2 | 297 | c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphat | 0.004 |
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 200 bits (509), Expect = 1e-60
Identities = 80/336 (23%), Positives = 134/336 (39%), Gaps = 19/336 (5%)
Query: 99 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 156
G IDVH H++ + F + T AAA GG TT++D D E +
Sbjct: 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGM 59
Query: 157 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 216
A + +D G+ ++ LE L + G+ K FM M + + +
Sbjct: 60 AGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFM---AYRGMNMIDDVTLLKT 116
Query: 217 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 276
L + ++VHAE + +++ + + + +RPP E A L +A
Sbjct: 117 LDKAVKTGSLVMVHAENGDAA-DYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALA 175
Query: 277 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF---SAEEIPD 333
+ A ++IVH++ S + +M AK+ G ETC HYL E
Sbjct: 176 EIV-------NAPIYIVHVTCEESL-EEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF 227
Query: 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGIS 392
++ PP R + + LW AL +G + +SSDH K +F G
Sbjct: 228 EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAP 287
Query: 393 SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 428
++ L + + + ++L Q + RPAK+ G
Sbjct: 288 GVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFG 323
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 196 bits (498), Expect = 5e-59
Identities = 63/339 (18%), Positives = 114/339 (33%), Gaps = 20/339 (5%)
Query: 98 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 155
PG ID H H P G + F GT+AA AGG T +ID E
Sbjct: 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKK 59
Query: 156 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 215
A++++ D + + + +E L+ G+ SF C + M +
Sbjct: 60 WADEKVNCDYSLHVAITWWSEQVSREMEILVKER--GVNSFKCFMAYKNSFMVTDQEMYH 117
Query: 216 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 275
VHAE + + + + +RP + E A + +
Sbjct: 118 IFKRCKELGAIAQVHAENGDMV-FEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVI 176
Query: 276 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 335
A + + + D++ + + G + E L + + D
Sbjct: 177 ADSVC--------TPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHD 228
Query: 336 TRF-----KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 390
R P D K L + L G +D + +D+ + K + + +F K G
Sbjct: 229 WRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNG 288
Query: 391 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 428
++ ++ + + W G G +T Q S A++
Sbjct: 289 VNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFN 327
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 193 bits (490), Expect = 8e-58
Identities = 86/347 (24%), Positives = 141/347 (40%), Gaps = 20/347 (5%)
Query: 100 LIDVHAHLDDPGRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 157
ID H H+ P + + +G+KAA GG TT I+M + + E +L A
Sbjct: 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKA 59
Query: 158 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 217
E Y D F + + L ++ G+ K F+ F + + + L
Sbjct: 60 EGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTL 116
Query: 218 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277
+ + H E + R + T + +RP + E T +
Sbjct: 117 RLAKELGVIVTAHCENAELVGRLQQKLLSEGKT-GPEWHEPSRPEAVEAEGTARFATFLE 175
Query: 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD-- 335
T GA ++VHLS + D M AK G I +E+ + G
Sbjct: 176 TT-------GATGYVVHLSCKPAL-DAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE 227
Query: 336 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 394
++ +PP+RD N++ LW+AL G ID + +DH P E KLL + F GI ++
Sbjct: 228 AMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAI 287
Query: 395 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGN 439
+ + + ++YG G + + + S + AKL G KG IA+G+
Sbjct: 288 EDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGS 334
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 194 bits (492), Expect = 1e-57
Identities = 76/393 (19%), Positives = 138/393 (35%), Gaps = 66/393 (16%)
Query: 99 GLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDMPLNS---DPSTISTETLKL 152
G ID H H+D+P + + T++A AGG TT++ + E++KL
Sbjct: 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60
Query: 153 KVD-AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPM 207
VD +E+ +Y D G L + A E L + S
Sbjct: 61 DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQ 120
Query: 208 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 267
+ I + + ++HAE + ++ ++ T + +RP E
Sbjct: 121 ISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLT-DAYYHGVSRPSIVEGE 179
Query: 268 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 327
A +T+A + VH+S ++ +++ +A+T G + ETCP Y S
Sbjct: 180 ATNRAITLATTM-------DTPILFVHVSSPQAA-EVIKQAQTKGLKVYAETCPQYALLS 231
Query: 328 AEEIPDGD------------------------------TRFKCAPPIRDAANKEKLWEAL 357
+++ C+PPIR ++ +W+ +
Sbjct: 232 DAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGM 291
Query: 358 MDGHIDMLSSDHSPTVPELKLL-------------DEGNFLKAWGGISSLQFVLPVTWSY 404
+G ++ SDH K G F G+ + +P+ + Y
Sbjct: 292 NNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDY 351
Query: 405 GRKYG--VTLEQLASWWSERPAKLAG-QVSKGA 434
G G ++ +L PAK+ G KG+
Sbjct: 352 GYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 192 bits (487), Expect = 2e-57
Identities = 70/339 (20%), Positives = 117/339 (34%), Gaps = 20/339 (5%)
Query: 98 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 155
PG IDV+ +L P G T + F GTKAA AGG T +ID +P + + + +
Sbjct: 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGSSLLTSFEKWHE 59
Query: 156 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 215
AA+ + D + LE L+ G+ SF D + S + E
Sbjct: 60 AADTKSCCDYSLHVDITSWYDGVREELEVLVQDK--GVNSFQVYMAYKDLYQMSDSQLYE 117
Query: 216 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 275
+ L +LVHA + + + +RP E A+ + +
Sbjct: 118 AFTFLKGLGAVILVHA-ENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAI 176
Query: 276 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE----- 330
A ++I + S++ D++ A+ G + E L
Sbjct: 177 AGRI-------NCPVYITKVMSKSAA-DIIALARKKGPLVFGEPIAASLGTDGTHYWSKN 228
Query: 331 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 390
P D + L L G + + S H P K + + NF G
Sbjct: 229 WAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEG 288
Query: 391 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 428
++ ++ + V W G + Q + S AK+
Sbjct: 289 VNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFN 327
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 182 bits (463), Expect = 6e-54
Identities = 90/338 (26%), Positives = 147/338 (43%), Gaps = 21/338 (6%)
Query: 99 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 156
G ID H HLD P G + F +GT+AAA GG T+++D + + +
Sbjct: 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFC-LTKKGESLKSAIATWHEK 59
Query: 157 AEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKE 215
A + +D GF + N LE+++++ G+ LK FM + + + +
Sbjct: 60 ARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNV---FQADDETLFK 116
Query: 216 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 275
L + VHAE ++ + + TRPP E A + +
Sbjct: 117 TLVKAKELGALVQVHAENGDVL-DYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIAL 175
Query: 276 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 335
+ L++VH+S AS+ + EA+ G ++ ETCP YLA + D
Sbjct: 176 TALAG-------SQLYVVHVSCASAV-QRIAEAREKGWNVYGETCPQYLALDVSIMDQPD 227
Query: 336 ---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGI 391
++ +PP+R+ N+E LW AL +G + + SDH P K L G+F K G
Sbjct: 228 FEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGG 287
Query: 392 SSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 428
++ L + +S G + G ++L Q S + AKL G
Sbjct: 288 PLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFG 325
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 175 bits (444), Expect = 2e-51
Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 24/330 (7%)
Query: 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 158
G ID+H HL DPG+T E SG++ A AGG TT++ MP N++P +T + + ++
Sbjct: 1 GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSK 59
Query: 159 KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 218
V G + + + G +F + P+ ++S +++ L
Sbjct: 60 SVGLCRVLPTGTITKGR--KGKEIADFYSLKEAGCVAFTD----DGSPVMDSSVMRKALE 113
Query: 219 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278
+ ++ P++ H E +K + + + + L +R P EE I +A+
Sbjct: 114 LASQLGVPIMDHCEDDKLAYGVINEGEVS-----ALLGLSSRAPEAEEIQIARDGILAQR 168
Query: 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 338
T + SL+++ K G IT E P++L F+ E+ +
Sbjct: 169 TG--------GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANA 220
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398
+ PP+R ++ L E + G ID ++DH+P K L A GI LQ L
Sbjct: 221 RVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGIIGLQTAL 276
Query: 399 PVTWSYGRKYGVTLEQLASWWSERPAKLAG 428
P RK ++L++L ++ PA++ G
Sbjct: 277 PSALELYRKGIISLKKLIEMFTINPARIIG 306
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 163 bits (413), Expect = 8e-47
Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 21/335 (6%)
Query: 99 GLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 157
G++D H H+ D G F +++AA GGITT+I+MP + P T + + K A
Sbjct: 1 GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQA 59
Query: 158 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 217
+R+ VD +GG VP N + + +AG +G KS M S F + + E
Sbjct: 60 GQRLKVDFALYGGGVP---GNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIF 116
Query: 218 SVLARYKRPLLVHA---EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 274
+A ++VHA + + ++ +K + Y ++P E
Sbjct: 117 QEIAACGSVIVVHAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQE--------N 164
Query: 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334
A E IV ++L+ +A++ G + E+ P YL + ++
Sbjct: 165 EAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI 224
Query: 335 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 394
K APP+R A +LWE L +G ID L SDH E K + KA G L
Sbjct: 225 GPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGL 284
Query: 395 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 428
+ LP+ + G G ++LE+L E+PAKL G
Sbjct: 285 ETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFG 319
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 4e-25
Identities = 33/329 (10%), Positives = 74/329 (22%), Gaps = 40/329 (12%)
Query: 102 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 161
D H HL D G + I MP N P + E +
Sbjct: 11 DWHLHLRD-GDML-----KTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAV 63
Query: 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 221
F + ++ L G+ + N ++
Sbjct: 64 PAGHDFTPLMTCYL-TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVT-------- 114
Query: 222 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281
+ +E + + + T
Sbjct: 115 ---SVDAIMPVLE---RMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLT-- 166
Query: 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGDTRFK 339
+ H++ ++ + + + P +L F+ +
Sbjct: 167 -----ALKVVFEHITTKDAA----DYVRDGNERLAATITPQHLMFNRNHMLVGGVRPHLY 217
Query: 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399
C P ++ +++ L E + G + S + + ++L
Sbjct: 218 CLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYAT 277
Query: 400 VTWSYGRKYGVTLEQLASWWSERPAKLAG 428
V L+ ++ S + G
Sbjct: 278 VFEEMN-----ALQHFEAFCSVNGPQFYG 301
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Score = 91.7 bits (226), Expect = 6e-21
Identities = 51/350 (14%), Positives = 95/350 (27%), Gaps = 48/350 (13%)
Query: 99 GLIDVHAHLDDPGRTEWEGFP--------------SGTKAAAAGGITTLIDMPLNSDPST 144
G H H+ +P G + A A G+ T++D+ ++
Sbjct: 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDV--STFDIG 73
Query: 145 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 204
L AA+ I G W ++E L + ++ + +GI
Sbjct: 74 RDVSLLAEVSRAADVHIVAATGLWFDPPLS--MRLRSVEELTQFFLREIQYGIEDTGIRA 131
Query: 205 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264
+ A+ K + L A + V
Sbjct: 132 GIIKVATTGKA----TPFQELVLKAAARASLATGVPVTT--------------------H 167
Query: 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 324
A+ R+ A ++G + SD + L L G I ++ PH
Sbjct: 168 TAASQRDGEQQAAIFESEGL--SPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSA 225
Query: 325 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 384
+ + R K + + M ++S+D
Sbjct: 226 IGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQ--ILVSNDWLFGFSSYV--TNIMD 281
Query: 385 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGA 434
+ + F+ + R+ GV E LA PA+ + +
Sbjct: 282 VMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPTLRAS 331
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 89.8 bits (221), Expect = 1e-20
Identities = 37/338 (10%), Positives = 78/338 (23%), Gaps = 57/338 (16%)
Query: 99 GLIDVHAHLDDPGRTE---WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 155
G ID H HL G G+T+++ + +D + E+L K
Sbjct: 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTR 59
Query: 156 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 215
A + G + +
Sbjct: 60 ALNEEGISAWMLTGAYHVPSRTITG----------------SVEKDVAIIDRVIGVKCAI 103
Query: 216 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 275
A L + E + + + A++ + +
Sbjct: 104 SDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSK----------KALQPIYDL 153
Query: 276 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 335
++ + + + + V L F+ + D
Sbjct: 154 LENC-------DVPISKLLPT---------------HVNRNVPLFEQALEFARKGGTI-D 190
Query: 336 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 395
P+ A + +A + LSSD + + P G++ +
Sbjct: 191 ITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFD----DEGNLTHIGVAGFE 246
Query: 396 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 433
+L + Y ++ + A KG
Sbjct: 247 TLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKG 284
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 112 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 52.7 bits (126), Expect = 2e-09
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 392 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
+L+ + G+ +++ G + + +G+ AD+ +++P E
Sbjct: 16 QNLEGEFDILVENGKI--KKIDKNILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKE 73
Query: 452 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
+ L+ + K + G+ L GKV+ TI G +VYK+
Sbjct: 74 WILNEET-NLSKS-RNTPLWGKVLKGKVIYTIKDGKMVYKD 112
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Score = 50.8 bits (121), Expect = 1e-08
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-- 108
+ P+ V + G II++ S VVD ++ P ++ +
Sbjct: 16 HLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNC-TVVDLSGQILCPEILPGNDADLLV 74
Query: 109 -DPGRTEWEGFPSGT------KAAAAGGITT 132
P + + G KA G T
Sbjct: 75 MTPELRIEQVYARGKLMVKDGKACVKGTFET 105
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Score = 51.7 bits (124), Expect = 2e-08
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVH 104
IV G++ + +K+G I +I + +V+ ++ G I+V
Sbjct: 74 IVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVG 133
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTE 148
D F GG+ + M + + S + +
Sbjct: 134 KLADLV-VWSPAFFGVKPATVIKGGMIAIAPMG-DINASIPTPQ 175
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.8 bits (111), Expect = 5e-07
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 432 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491
IA+G+ AD+V+W+P+ + + + G G L IS+G +V++
Sbjct: 50 MVIIAVGSDADVVIWDPDKMKTITAKSH-KSTVEY-NIFEGMECHGSPLVVISQGKIVFE 107
Query: 492 EGN 494
+GN
Sbjct: 108 DGN 110
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Score = 44.3 bits (104), Expect = 1e-06
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 45 YWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y LT RI T + AV I +G I S+ + P + A++ P L
Sbjct: 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEI---EQRSLNGAILSPTLAAG 58
Query: 104 HAHLDDPGRTEWE 116
+++
Sbjct: 59 KVANLTAFTPDFK 71
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
IA+G+ AD+V+W+PEAE ++ S+Y G ++ G + RG ++ E
Sbjct: 50 FPIAVGSDADIVLWDPEAEMVIEQTA--MHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDE 107
Query: 493 GN 494
G+
Sbjct: 108 GS 109
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 44.2 bits (104), Expect = 3e-06
Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 413 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 472
+ + R G+ + +G+ ADL++ + + + ++D + S + G
Sbjct: 34 ADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDLDIDTKVDASQFRSLHK--YSPFDG 91
Query: 473 RRLSGKVLATISRGNLVYKEGN 494
++G + T+ RG +V ++G
Sbjct: 92 MPVTGAPVLTMVRGTVVAEKGE 113
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Score = 43.0 bits (101), Expect = 8e-06
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 469
T++++ + L+G++ I G +ADLVV + + + +
Sbjct: 26 GTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNH------- 78
Query: 470 YLGRRLSGKVLATISRGNLVYKEGNH 495
L SG+V AT+ G +Y +G +
Sbjct: 79 -LVHAFSGEVFATMVAGKWIYFDGEY 103
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 158
G +D H H T F + + G+TT + S E L+ D
Sbjct: 1 GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLAT-TVSTSLEKMKEILRKARDYIL 59
Query: 159 K 159
+
Sbjct: 60 E 60
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Score = 44.5 bits (103), Expect = 1e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 158
G ID H H + ++ + G+TT+ID T E + D A+
Sbjct: 1 GWIDDHVHCFEKMALYYDYPD---EIGVKKGVTTVIDAG------TTGAENIHEFYDLAQ 51
Query: 159 KRIYVDVGFWGGLVP 173
+ G
Sbjct: 52 QAKTNVFGLVNISKW 66
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 41.1 bits (96), Expect = 4e-05
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 441 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
ADLVV++P+ + + + + G + G+ RG + ++G
Sbjct: 54 ADLVVYDPQYRGTISVKT--QHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQ 105
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 41.1 bits (96), Expect = 6e-05
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 431 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490
I +G D+V+W+P + D H + + G +++G + TI GN+V+
Sbjct: 50 KLLLIDVGCDGDIVIWDPNQSKTISKDT--HHHAVDFNIFEGIKVTGIAVTTIVAGNIVW 107
Query: 491 KEGN 494
+
Sbjct: 108 SDNK 111
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 40.2 bits (93), Expect = 8e-05
Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 6/90 (6%)
Query: 47 LTSKRIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
L IVT + + + + I V+ +D ++M +
Sbjct: 8 LAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLEVGK 67
Query: 103 VHAHLDDPGR--TEWEGFPSGTKAAAAGGI 130
L + AAG
Sbjct: 68 SADLLVLNANPLDDLRALEHPALVIAAGHP 97
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 432 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491
I +G+ ADLV+++P E + + +A+ G +++G+ ++ + RG V +
Sbjct: 50 VFPIVVGSDADLVIFDPNIERVISAETHHMAVD--YNAFEGMKVTGEPVSVLCRGEFVVR 107
Query: 492 EGN 494
+
Sbjct: 108 DKQ 110
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 38.8 bits (90), Expect = 3e-04
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 434 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
IA+G+ AD+V+++P + L + + + G + G+V++ +SRG+ V ++
Sbjct: 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVD--YNPFEGMEVYGEVVSVLSRGSFVVRDK 108
Query: 494 N 494
Sbjct: 109 Q 109
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 61 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 37.0 bits (86), Expect = 3e-04
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ G +ADLVV++P S + + + + G V+++ +
Sbjct: 2 VQPGYYADLVVFDPA------------TVADSATFEHPTERAAGIHSVYVNGAAVWEDQS 49
Query: 495 HAPAACGSPI 504
G +
Sbjct: 50 FTGQHAGRVL 59
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Score = 38.9 bits (91), Expect = 0.001
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 32/143 (22%)
Query: 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET--------L 150
G ID H H +P + + A A GITTL P+ S T +
Sbjct: 1 GGIDTHVHFINPDQVD---------VALANGITTLFGGGTG--PAEGSKATTVTPGPWNI 49
Query: 151 KLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN 209
+ + + E + ++VG G G + + + + ++AG GLK I++
Sbjct: 50 EKMLKSTE-GLPINVGILGKG----HGSSIAPIMEQIDAGAAGLK-------IHEDWGAT 97
Query: 210 ASHIKEGLSVLARYKRPLLVHAE 232
+ I L+V + +H++
Sbjct: 98 PASIDRSLTVADEADVQVAIHSD 120
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 35.8 bits (82), Expect = 0.004
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSK----TGQVVDYGEAVIMPGLIDVHAH 106
I T + + + + G + I + D S+ G + I+PG+ D
Sbjct: 11 IICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFI----TPILPGVSDADLV 66
Query: 107 LDDPGRTEWEG 117
+ P ++ E
Sbjct: 67 IWYPDDSKKEY 77
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 36.8 bits (83), Expect = 0.004
Identities = 30/215 (13%), Positives = 52/215 (24%), Gaps = 12/215 (5%)
Query: 99 GLIDVHAHL-------DDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 151
G IDV + D E KA G T + + T S E +K
Sbjct: 1 GFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLI-----TTSDELMK 55
Query: 152 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 211
V + + GL E + + N + + +
Sbjct: 56 QGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLCENADVITK 115
Query: 212 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
V A L + + L++ R+ T+ + RE
Sbjct: 116 VTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGRE 175
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 306
G +H+ A+ +
Sbjct: 176 PGLAGAILDEADIYCGIIADGLHVDYANIRNAKRL 210
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 100.0 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 100.0 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 100.0 | |
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 100.0 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 100.0 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 100.0 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 99.92 | |
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 99.64 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.63 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.62 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.59 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 99.59 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.59 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.58 | |
| d1ejxc1 | 181 | alpha-Subunit of urease {Klebsiella aerogenes [Tax | 99.58 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 99.58 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.58 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 99.57 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 99.57 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 99.5 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.49 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.47 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.45 | |
| d2r8ca1 | 102 | Uncharacterized protein EAJ56179 {Unidentified org | 99.44 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.44 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.43 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 99.41 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.41 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.41 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.39 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.39 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.38 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.38 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 99.32 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.31 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.3 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.29 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.28 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.25 | |
| d1m7ja1 | 55 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.25 | |
| d1m7ja2 | 61 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.24 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.23 | |
| d2vhla1 | 91 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.22 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.2 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.16 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 99.14 | |
| d1p1ma1 | 123 | Hypothetical protein TM0936 {Thermotoga maritima [ | 99.14 | |
| d2bb0a1 | 113 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.13 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.12 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.11 | |
| d2paja1 | 139 | Hypothetical protein GOS_1943094 {Environmental sa | 99.09 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.05 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.03 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.98 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.97 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 98.88 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 98.82 | |
| d4ubpc1 | 180 | alpha-Subunit of urease {Bacillus pasteurii [TaxId | 98.8 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.7 | |
| d2i9ua1 | 109 | Guanine deaminase {Clostridium acetobutylicum [Tax | 98.67 | |
| d1e9yb1 | 180 | alpha-Subunit of urease {Helicobacter pylori [TaxI | 98.62 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 98.59 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 98.57 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.52 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 98.5 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 98.43 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.42 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 98.38 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 98.33 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.29 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.23 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.91 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 97.63 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 97.52 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.43 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 97.01 | |
| d2uz9a1 | 131 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 96.99 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 96.69 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 96.54 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 96.52 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.27 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 96.11 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.07 | |
| d1ra0a1 | 103 | Cytosine deaminase {Escherichia coli [TaxId: 562]} | 95.92 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 95.92 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 95.14 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 93.74 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 91.29 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 89.65 | |
| d2gwga1 | 342 | 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas | 86.79 |
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=100.00 E-value=9.6e-39 Score=309.32 Aligned_cols=328 Identities=26% Similarity=0.341 Sum_probs=288.2
Q ss_pred eeecccccCCCCC--CCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcc
Q 010547 100 LIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY 177 (507)
Q Consensus 100 fID~H~H~~~~~~--~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (507)
|||.|+|+..++. ...+++.+..+.++.+||||+++++ ++.|.....+.+....+.+.....+++.++++.......
T Consensus 1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~ 79 (335)
T d1gkpa2 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEK 79 (335)
T ss_dssp EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTT
T ss_pred CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECC-CCCCCCChHHHHHHHHHHHhcCCccceeeEEEEeccccc
Confidence 8999999987633 3568999999999999999999998 777877888888888888888899999999888877777
Q ss_pred cHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcccccccc
Q 010547 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (507)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (507)
...++.++...|+.+++.|+.+ .+.+..++..+.++++.++..+..+.+|+++............ ..+..+...++
T Consensus 80 ~~~el~~l~~~G~~~~k~~~~~---~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~-~~~~~~~~~~~ 155 (335)
T d1gkpa2 80 TEGQLREIVADGISSFKIFLSY---KNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLL-SEGKTGPEWHE 155 (335)
T ss_dssp HHHHHHHHHHTTCCEEEEEECS---TTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHH-HTTCCSGGGTT
T ss_pred cHHHHHHHHhhhcccccccccc---CCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhh-cccccCccccc
Confidence 7788899999999999999855 3456789999999999999999999999998776543222222 44455667788
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCC--
Q 010547 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD-- 335 (507)
Q Consensus 258 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~-- 335 (507)
..+|...+..++.+.+.+++.. +.++|+.|+++. .+++.++.++++|..+++++||||+.++.+.+...+
T Consensus 156 ~~~p~~~E~~av~r~~~la~~~-------~~~~hi~HiSt~-~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~ 227 (335)
T d1gkpa2 156 PSRPEAVEAEGTARFATFLETT-------GATGYVVHLSCK-PALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE 227 (335)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH-------TCEEEECSCCSH-HHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHh-------Ccccchhhhhhh-hhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCch
Confidence 8899999999999999999987 899999999998 999999999999999999999999999988776554
Q ss_pred -CceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHH
Q 010547 336 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLE 413 (507)
Q Consensus 336 -~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~ 413 (507)
..++.+||+|...+++.+++++.+|.+++++|||+|+....|..+..+|+..+.|+.|++.+++.++...+ +.++|++
T Consensus 228 ~~~~k~~PPlRs~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~ 307 (335)
T d1gkpa2 228 AMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIH 307 (335)
T ss_dssp HHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHH
T ss_pred hcceecccCCCCHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHH
Confidence 45789999999999999999999999999999999999999987777899999999999999999998654 5569999
Q ss_pred HHHHHHhhchhHHhCC-CCCCccccCCC
Q 010547 414 QLASWWSERPAKLAGQ-VSKGAIAIGNH 440 (507)
Q Consensus 414 ~al~~~T~n~A~~lgl-~~~G~I~~G~~ 440 (507)
+++++++.|||++||+ +++|+|++|++
T Consensus 308 ~~v~~~S~nPAri~Gl~~~KG~i~~G~D 335 (335)
T d1gkpa2 308 RFVDAASTKAAKLFGLFPRKGTIAVGSD 335 (335)
T ss_dssp HHHHHHTHHHHHHTTCTTTSSSCCTTSB
T ss_pred HHHHHHHHHHHHHhCCCCCCCeecCCCC
Confidence 9999999999999999 88999999985
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=100.00 E-value=1.3e-38 Score=307.07 Aligned_cols=323 Identities=26% Similarity=0.349 Sum_probs=280.7
Q ss_pred ceeecccccCCC--CCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc
Q 010547 99 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 176 (507)
Q Consensus 99 GfID~H~H~~~~--~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (507)
|+||.|+|+..+ +..+++++.+..++|+.+||||++++| ++.|.....+.+....+.+.....+++.+++.......
T Consensus 1 G~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mp-n~~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~ 79 (330)
T d1nfga2 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTD 79 (330)
T ss_dssp CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-ECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCH
T ss_pred CcEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECC-CCCCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccch
Confidence 899999999876 446778999999999999999999999 88888888999999988888888999998887776666
Q ss_pred ccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccc
Q 010547 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 256 (507)
Q Consensus 177 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (507)
...+++..+.+.|+.+++.|+...+ .+..+...+.++++.+++.+..+.+|+|+...+........ .++..+...+
T Consensus 80 ~~~~el~~~~~~Gv~~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~-~~g~~~~~~~ 155 (330)
T d1nfga2 80 SVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFV-AEGKTAPIYH 155 (330)
T ss_dssp HHHHHTTTGGGGTCCEEEEESSSTT---TTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHH-HTTCCSTHHH
T ss_pred hhHHHHhhhhhhcccceeeeccccc---cCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhh-ccCCcCchhc
Confidence 6666777778899999999986643 34678899999999999999999999999776543222221 4455566667
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC--
Q 010547 257 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-- 334 (507)
Q Consensus 257 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~-- 334 (507)
...+|...|..++.+.+.+++.. +.++|+.|+++. .+++.++.++++|..+++++||||+.++.+++..+
T Consensus 156 ~~~rp~~aE~~av~r~~~la~~~-------~~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~ 227 (330)
T d1nfga2 156 ALSRPPRVEAEATARALALAEIV-------NAPIYIVHVTCE-ESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF 227 (330)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECCCCSH-HHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTT
T ss_pred ccccChHHHHHHHHHHHHHHHHh-------CCeeeechhcch-HHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccc
Confidence 88999999999999999999987 899999999999 99999999999999999999999999999887654
Q ss_pred -CCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhh-hccccCCccccCCCCchhhhHHHHHHHHHHhcCCCH
Q 010547 335 -DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL-KLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 412 (507)
Q Consensus 335 -~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~ 412 (507)
++.++.+||+|...+++.+++++.+|.+++++|||+|+.... +.....+|+.++.|+.|++.+++.++..+.+.++++
T Consensus 228 ~~~~~k~~PPLR~~~d~~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~~~v~~~~l~l 307 (330)
T d1nfga2 228 EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISL 307 (330)
T ss_dssp GGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHTTSSCH
T ss_pred cCceeeecCcCCcHHHHHHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHHHHHHcCCCCH
Confidence 667899999999999999999999999999999999987542 222345799999999999999999998888889999
Q ss_pred HHHHHHHhhchhHHhCC-CCCCc
Q 010547 413 EQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 413 ~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
++++++.|.|||++||| +++|+
T Consensus 308 ~~~v~~~S~nPAki~gL~p~KGt 330 (330)
T d1nfga2 308 TQFVELVATRPAKVFGMFPQKGT 330 (330)
T ss_dssp HHHHHHHTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999 88986
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.8e-38 Score=304.23 Aligned_cols=324 Identities=23% Similarity=0.288 Sum_probs=280.8
Q ss_pred cceeecccccCCC--CCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC
Q 010547 98 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 175 (507)
Q Consensus 98 PGfID~H~H~~~~--~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (507)
||+||+|+|+..+ +..+++++.+..+.++++||||++++| ++.|.....+.+....+.++...++++.+++++....
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~ 79 (334)
T d1kcxa2 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWY 79 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCC
T ss_pred CCeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCC
Confidence 9999999999987 788899999999999999999999999 8889888899999998888889999999999888877
Q ss_pred cccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccc
Q 010547 176 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (507)
Q Consensus 176 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 254 (507)
....+++..+.. .|+.+++.|+..+ ..+..+++.+.++++.+++.+.++.+|+|+............ +.+..+..
T Consensus 80 ~~~~~el~~l~~~~g~~~~ki~~~~~---~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~-~~g~~~~~ 155 (334)
T d1kcxa2 80 DGVREELEVLVQDKGVNSFQVYMAYK---DLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRIL-EMGITGPE 155 (334)
T ss_dssp TTHHHHHHHHHHTTCCCEEEEESCST---TTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH-HTTCCSTH
T ss_pred cchHHHHHHHHHhccCceeeeeeccC---CCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchh-hcCCcchh
Confidence 766777777664 6899999998653 346788999999999999999999999999877543322221 44555666
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC
Q 010547 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334 (507)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 334 (507)
.++..+|...|..++.+.+.+++.+ |.++|+.|+++. .+++.++.++++|..+++++|||++.+....+...
T Consensus 156 ~~~~~rp~~aE~~ai~r~~~la~~~-------g~~~hi~HiSt~-~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~ 227 (334)
T d1kcxa2 156 GHALSRPEELEAEAVFRAIAIAGRI-------NCPVYITKVMSK-SAADIIALARKKGPLVFGEPIAASLGTDGTHYWSK 227 (334)
T ss_dssp HHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEEEEECCH-HHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCS
T ss_pred hccCCCCHHHHHHHHHHHHHHHhhc-------CCceeeccccch-HHHHHHHHHhccccceeeccchhheeecccccccC
Confidence 7788899999999999999999987 999999999999 99999999999999999999999999987776554
Q ss_pred C----CceeEcCCCC-ChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-Hhc
Q 010547 335 D----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY 408 (507)
Q Consensus 335 ~----~~~~~~p~~~-~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 408 (507)
+ ..+..+||++ ...+++.+++++.+|.+++++|||+|+....|..+..+|+.++.|+.|++.+++.++... .+.
T Consensus 228 ~~~~~~~~~~~pPlr~~~~d~eaL~~~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g 307 (334)
T d1kcxa2 228 NWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG 307 (334)
T ss_dssp SHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTT
T ss_pred ChhHhcceEeeeccCchhhhHHHHHHHhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcC
Confidence 3 3455566665 677899999999999999999999999999988766789999999999999999999754 556
Q ss_pred CCCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 409 GVTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 409 gls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
.+|+++++++.|.|||++||| +++|+
T Consensus 308 ~isl~~~v~~~s~nPA~i~gL~p~KGr 334 (334)
T d1kcxa2 308 KMDENQFVAVTSTNAAKIFNLYPRKGR 334 (334)
T ss_dssp SSCHHHHHHHHTHHHHHHHTCTTTSSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 699999999999999999999 88885
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=4.4e-38 Score=303.54 Aligned_cols=324 Identities=22% Similarity=0.261 Sum_probs=281.4
Q ss_pred cceeecccccCCC--CCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC
Q 010547 98 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 175 (507)
Q Consensus 98 PGfID~H~H~~~~--~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (507)
|||||+|+|+..+ +..+++++.+..++++++||||+++++ ++.|.....+.+....+.+.....+++.++++.....
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~ 79 (334)
T d2ftwa2 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWS 79 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCC
T ss_pred CCeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECC-CCCCCCCcHHHHHHHHHHHhcCCcceeeEEEeecCcc
Confidence 9999999999887 777889999999999999999999999 7778888888899888888888899999998888777
Q ss_pred cccHHHHHHHH-HcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccc
Q 010547 176 AYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (507)
Q Consensus 176 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 254 (507)
.....++..+. ..|+.+++.|+..+. ....+++.+.++++.+++.+..+.+|+|+......+..... +.+.....
T Consensus 80 ~~~~~e~~~l~~~~g~~~~k~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~-~~g~~~~~ 155 (334)
T d2ftwa2 80 EQVSREMEILVKERGVNSFKCFMAYKN---SFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKML-EMGITGPE 155 (334)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESSCTT---TTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTH
T ss_pred hhhhHhHHHHHHhcCccccceeecccc---ccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhh-ccCCCCcc
Confidence 66666776665 478999999976542 23568889999999999999999999999887655433322 44455566
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC
Q 010547 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334 (507)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 334 (507)
.+...+|+..|..++.+.+.+++.. +.++|+.|+++. .+++.++.+++.|.++++++||||+.++.+.+...
T Consensus 156 ~~~~~rp~~aE~~~v~r~~~la~~~-------~~~lhi~HiSt~-~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~ 227 (334)
T d2ftwa2 156 GHELSRPEALEAEATNRAIVIADSV-------CTPVYIVHVQSI-GAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNH 227 (334)
T ss_dssp HHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCS
T ss_pred cccccCcHHHHHHHHHHHHHHHHhh-------ccceeeccccch-hhhhhHHHhcccCCceeeccccceeeccHHHHhcc
Confidence 7778899999999999999999977 899999999999 99999999999999999999999999999887654
Q ss_pred C----CceeEcCCCCCh-hhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhc
Q 010547 335 D----TRFKCAPPIRDA-ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKY 408 (507)
Q Consensus 335 ~----~~~~~~p~~~~~-~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 408 (507)
+ ..++.+||+|.. .+++.+++++.+|.+++++|||+|+....|..+.++|+.++.|+.|++.+++.++.. +.+.
T Consensus 228 d~~~~~~~~~~PPlR~~~~d~~~L~~~l~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g 307 (334)
T d2ftwa2 228 DWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTG 307 (334)
T ss_dssp SHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTT
T ss_pred chhhccceEeeccccccHhhhhhHHHHhhCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcC
Confidence 3 467899999865 578899999999999999999999999999876678999999999999999999975 5566
Q ss_pred CCCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 409 GVTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 409 gls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
++|+++++++.|.|||++||| +++|+
T Consensus 308 ~lsl~~~v~~~s~nPAki~gL~p~KGr 334 (334)
T d2ftwa2 308 KLTWCQFVRATSSERARIFNIYPRKGR 334 (334)
T ss_dssp SSCHHHHHHHHTHHHHHHTTCTTTSSC
T ss_pred CCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 799999999999999999999 88885
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=100.00 E-value=2.2e-37 Score=299.05 Aligned_cols=323 Identities=28% Similarity=0.377 Sum_probs=278.8
Q ss_pred ceeecccccCCC--CCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCc
Q 010547 99 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 176 (507)
Q Consensus 99 GfID~H~H~~~~--~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (507)
|+||+|+|+..+ +..+++++.+..++++.+||||++++| ++.|.....+.+....+.+.....+++.++++......
T Consensus 1 G~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mp-nt~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 79 (332)
T d1ynya2 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFC-LTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEAND 79 (332)
T ss_dssp CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCH
T ss_pred CceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHHhccCccceeeEEEEecccc
Confidence 899999999876 677889999999999999999999999 88898888999999999888889999999888777666
Q ss_pred ccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcccccc
Q 010547 177 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 255 (507)
Q Consensus 177 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (507)
....++..+.. .|+.+++.|+... ..+..+.+.+.++++.+++.+.++.+|+|+...+........ ..+..+...
T Consensus 80 ~~~~el~~~~~~~g~~~~k~~~~~~---~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~-~~g~~~~~~ 155 (332)
T d1ynya2 80 QVLEELESVISSEGITSLKVFMAYK---NVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKAL-AEGNTDPIY 155 (332)
T ss_dssp HHHHHHHHHHHTSCCCEEEEESCST---TTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTTH
T ss_pred chhHHHHHHHhhhcccceeeeeccc---cccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHH-hcCCCCchh
Confidence 65666666654 6899999987553 234568899999999999999999999998776432222211 444555666
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC-
Q 010547 256 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG- 334 (507)
Q Consensus 256 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~- 334 (507)
+...+|...|..++.+.+.++++. |.++|+.|+++. .+++.++.++++|.++++++||||+.++.+.+...
T Consensus 156 ~~~~~p~~aE~~ai~r~~~la~~~-------g~~~hi~hiSt~-~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~ 227 (332)
T d1ynya2 156 HAYTRPPEAEGEATGRAIALTALA-------GSQLYVVHVSCA-SAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPD 227 (332)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECSCCSH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSS
T ss_pred ccccchhhHHHHHHHHHHHhhhhh-------cccccccccccc-hHHHHHHHHHHhCCCceeccccccccCCHHHHhhhh
Confidence 778899999999999999999987 889999999999 99999999999999999999999999999888765
Q ss_pred --CCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhh-ccccCCccccCCCCchhhhHHHHHHHH-HHhcCC
Q 010547 335 --DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK-LLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGV 410 (507)
Q Consensus 335 --~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gl 410 (507)
++.++++||+|...+++.+++++.+|.+++++|||.|+....+ ....++|+.++.|+.+++.+++.++.. +.+..+
T Consensus 228 ~~g~~~k~~PPLRs~~dr~aL~~al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~g~l 307 (332)
T d1ynya2 228 FEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRI 307 (332)
T ss_dssp SGGGGGCCSSCCCCTTHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSS
T ss_pred ccCceeEecCccccHHHHHHHHHHHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHcCCC
Confidence 4778999999999999999999999999999999999986543 334568999999999999999999975 556679
Q ss_pred CHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 411 TLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
|++++++++|.|||++||+ +++|+
T Consensus 308 sl~~~v~~~s~nPAki~GL~p~KGt 332 (332)
T d1ynya2 308 SLNQFVDISSTKAAKLFGMFPRKGT 332 (332)
T ss_dssp CHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 9999999999999999999 88886
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=3.3e-37 Score=297.62 Aligned_cols=322 Identities=31% Similarity=0.450 Sum_probs=281.2
Q ss_pred ceeecccccCCCCCCCCC-ChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcc
Q 010547 99 GLIDVHAHLDDPGRTEWE-GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY 177 (507)
Q Consensus 99 GfID~H~H~~~~~~~~~~-~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (507)
|+||+|+|+.+++....+ ++.+..++++.+||||++++| ++.|..+..+.+....+.+.....+++.++++.....
T Consensus 1 G~ID~HvH~repg~~~ke~~~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~-- 77 (325)
T d1gkra2 1 GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGN-- 77 (325)
T ss_dssp CEEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCTTC--
T ss_pred CcEeCCcCCCCCCCCCcccHHHHHHHHHHccCCceEEECC-CCCCCcCCHHHHHHHHHHhccCCcccccccccccccc--
Confidence 899999999888777665 599999999999999999999 8899989999999888888888889999887765543
Q ss_pred cHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcccccccc
Q 010547 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (507)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (507)
...+..+...|+.+++.++........+..++..+.++++.+++.+..+.+|+|+...+........ ..+..+...+.
T Consensus 78 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~-~~g~~~~~~~~ 155 (325)
T d1gkra2 78 -LPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIK-AAGGKDMAAYE 155 (325)
T ss_dssp -HHHHHHHHHTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHH-HTTCCSHHHHH
T ss_pred -HHHHHhhhhcccceeccccccccCCccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhh-hcCCccccccc
Confidence 4566677788999999987665545555678889999999999999999999999876543222211 44455666677
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCc
Q 010547 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 337 (507)
Q Consensus 258 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (507)
..+|...|..++.+.+.+++.. +.++|+.|+++. ..++.++.++++|..+++++||||+.++.+.+...++.
T Consensus 156 ~~rp~~aE~~~v~r~~~la~~~-------~~~~hi~hiSs~-~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~~~~~ 227 (325)
T d1gkra2 156 ASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNP-DGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPY 227 (325)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHH-------CCEEEECCCCSH-HHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGG
T ss_pred ccCchHHHHHHHHHHHHHhhhc-------CcceeccccccH-HHHHhhhhhhhcCCceEEeecccccccchhhhhccCcc
Confidence 8899999999999999999987 999999999999 99999999999999999999999999999988888889
Q ss_pred eeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHH
Q 010547 338 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLA 416 (507)
Q Consensus 338 ~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al 416 (507)
++++||+|...+++.+++++.+|.+++++|||+|+...+|.....+|+.++.|+.|++.+++.++.. +.+.++|+++++
T Consensus 228 ~k~~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v 307 (325)
T d1gkra2 228 MKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLV 307 (325)
T ss_dssp GCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHH
T ss_pred cccchhhhhhhhhHHHHHHHhcCcceEEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999999988776678999999999999999999975 455669999999
Q ss_pred HHHhhchhHHhCC-CCCC
Q 010547 417 SWWSERPAKLAGQ-VSKG 433 (507)
Q Consensus 417 ~~~T~n~A~~lgl-~~~G 433 (507)
+..|.|||++||+ +++|
T Consensus 308 ~~~s~nPAki~gl~p~KG 325 (325)
T d1gkra2 308 EVMCEKPAKLFGIYPQKG 325 (325)
T ss_dssp HHHTHHHHHHHTCTTTSS
T ss_pred HHHhHHHHHHhCCCCCCC
Confidence 9999999999999 7777
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=4.3e-36 Score=293.69 Aligned_cols=322 Identities=23% Similarity=0.347 Sum_probs=261.3
Q ss_pred ceeecccccCCCCC---CCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHH-----HHHHHhcCceeeEEEecc
Q 010547 99 GLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL-----KVDAAEKRIYVDVGFWGG 170 (507)
Q Consensus 99 GfID~H~H~~~~~~---~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 170 (507)
|+||+|+|+..++. ..++++.+..+.++.+||||++++| .+.|.......... ..+.+..+..+++.+++.
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp-~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~ 79 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFS-TQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLI 79 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEE-ECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEE
T ss_pred CceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHhcCccceeeEEEE
Confidence 89999999998765 5678899999999999999999998 66665544333322 223345678899998876
Q ss_pred ccCCCcccH---H-----HHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhh
Q 010547 171 LVPENAYNA---S-----ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 242 (507)
Q Consensus 171 ~~~~~~~~~---~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~ 242 (507)
......... + .+......|+.+++.|+.+++ ...+.+.+.++++.+++.+..+.+|+|+...+.....
T Consensus 80 ~~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~----~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~ 155 (384)
T d2fvka2 80 LFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG----LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIE 155 (384)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTT----TBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred EeCCCCccchHHHHHhHHHHHHcccCcccccceeccccc----cccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHH
Confidence 665543321 1 122334579999999986543 2468888999999999999999999999877653332
Q ss_pred cccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccc
Q 010547 243 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH 322 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~ 322 (507)
... +.+..+...+...+|...|..++.+.+.+++++ |.++|+.|+++. .+++.++.++++|..|++++|||
T Consensus 156 ~~~-~~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~-------g~~lhi~HiSt~-~~ve~I~~ak~~G~~Vt~Et~ph 226 (384)
T d2fvka2 156 ALE-EQGLTDAYYHGVSRPSIVEGEATNRAITLATTM-------DTPILFVHVSSP-QAAEVIKQAQTKGLKVYAETCPQ 226 (384)
T ss_dssp HHH-HTTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHT-------TCCEEECSCCCH-HHHHHHHHHHHHTCCEEEEECHH
T ss_pred HHh-hcCCCChhhcccccccchhhHHHHHHHHHHHhc-------CceEEecccccc-hhhHHHHHhhhcCCCEEEEeChH
Confidence 211 444556667788999999999999999999987 899999999999 99999999999999999999999
Q ss_pred cccccccCCC------------------------------CCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCC
Q 010547 323 YLAFSAEEIP------------------------------DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372 (507)
Q Consensus 323 ~~~~~~~~~~------------------------------~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~ 372 (507)
|+.++.+.+. ..++.++++||+|...+++.+++++.+|.+++++|||+|+
T Consensus 227 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~ 306 (384)
T d2fvka2 227 YALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSY 306 (384)
T ss_dssp HHHCCGGGGSCC--------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCC
T ss_pred HhhccchhhcccccccccccccccccccccccccccccccccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCCCCC
Confidence 9999876442 3467789999999999999999999999999999999999
Q ss_pred Chhhhccc-------------cCCccccCCCCchhhhHHHHHHHHHH-hcC-CCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 373 VPELKLLD-------------EGNFLKAWGGISSLQFVLPVTWSYGR-KYG-VTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 373 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~-~~g-ls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
...+|... .++|+.++.|+.|++.+++.++.... +.+ +|+++++++.+.|||++||+ +++|+
T Consensus 307 ~~~eK~~~~~~~~~~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 307 NYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp BSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CHHHhcccccccccccccccccCccccCCCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 87766432 34799999999999999999998644 444 58999999999999999999 88885
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=5.8e-34 Score=273.33 Aligned_cols=309 Identities=29% Similarity=0.411 Sum_probs=223.8
Q ss_pred ceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC-cc
Q 010547 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AY 177 (507)
Q Consensus 99 GfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 177 (507)
|+||+|+|+.+++....+++.+..++++.+||||++++| ++.|.....+.+....+.......+++..++.+.... ..
T Consensus 1 G~ID~HvHlr~PG~~~~ed~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (310)
T d1xrta2 1 GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGK 79 (310)
T ss_dssp CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSS
T ss_pred CcEeCcccCCCCCccccccHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHhhccCCcccccceeeccCCccc
Confidence 899999999998888889999999999999999999999 8889888899888888877777788888877665432 22
Q ss_pred cHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcccccccc
Q 010547 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 257 (507)
Q Consensus 178 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (507)
...++..+...|..++.. .+.+..+...+.++++.+++.+.++..|+++........ ..+......+.
T Consensus 80 ~~~~~~~~~~~g~~~f~~-------~~~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~~-----~~~~~~~~~~~ 147 (310)
T d1xrta2 80 EIADFYSLKEAGCVAFTD-------DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVI-----NEGEVSALLGL 147 (310)
T ss_dssp SBCCHHHHHHHTCCCBCC-------TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC-------------------
T ss_pred hhhhhhhcccCcEEEEEC-------CCCCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhhhh-----hhhhcccccCc
Confidence 333455555666654422 344567889999999999999999999999876543322 22233444566
Q ss_pred CCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCc
Q 010547 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 337 (507)
Q Consensus 258 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (507)
..+|...|..++.+.+.+++.. +.++|+.|+++. .+++.++.++..|..+++++|||++.++.+++...+..
T Consensus 148 ~~rp~~~E~~ai~r~~~la~~~-------~~~~~i~HiSt~-~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~~~~~ 219 (310)
T d1xrta2 148 SSRAPEAEEIQIARDGILAQRT-------GGHVHIQHVSTK-LSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGAN 219 (310)
T ss_dssp ------CHHHHHHHHHHHHHHH-------CCEEEESCCCSH-HHHHHHHHHHHTTCCEEEEECGGGGC------------
T ss_pred cccchHHHHHHHHHHHHHHhhc-------CCeeeccccchH-HHHHHHHHHHHcCCceecchHHHHhhccccccccccch
Confidence 7889999999999999999976 899999999999 99999999999999999999999999999998888899
Q ss_pred eeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHH
Q 010547 338 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS 417 (507)
Q Consensus 338 ~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~ 417 (507)
++++||+|...+++.+++++.+|.+++++|||+|+....+. .|+..+.|+.|++.+++.++..+.+.+++++++++
T Consensus 220 ~k~~PplR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K~----~~~~~~~G~~g~e~~lp~l~~~v~~g~l~l~~~v~ 295 (310)
T d1xrta2 220 ARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKE----LVEFAMPGIIGLQTALPSALELYRKGIISLKKLIE 295 (310)
T ss_dssp ----------CCHHHHHHHHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHHHHHHTTSSCHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHcc----CcccCCCCceeHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999877653 36667789999999999999888888899999999
Q ss_pred HHhhchhHHhCCCCCC
Q 010547 418 WWSERPAKLAGQVSKG 433 (507)
Q Consensus 418 ~~T~n~A~~lgl~~~G 433 (507)
..|.|||++||+ ++|
T Consensus 296 ~~s~npAki~gL-~~G 310 (310)
T d1xrta2 296 MFTINPARIIGV-DLG 310 (310)
T ss_dssp HHTHHHHHHHTC-SCS
T ss_pred HHHHHHHHHhCC-CCC
Confidence 999999999999 455
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7.2e-24 Score=205.77 Aligned_cols=329 Identities=16% Similarity=0.138 Sum_probs=239.3
Q ss_pred EecceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHh--cCceeeEEEeccccC
Q 010547 96 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE--KRIYVDVGFWGGLVP 173 (507)
Q Consensus 96 v~PGfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 173 (507)
=+|-=.|+|+|+-+ +........+.++|+|+++++| ++.|...+.+.+....+.+. ......+.++.+...
T Consensus 5 ~~~~~~D~HvH~Re------g~~~~~t~aa~agG~t~v~~MP-NT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~~ 77 (343)
T d2eg6a1 5 KIRRPDDWHLHLRD------GDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYL 77 (343)
T ss_dssp EEECCCEEEECCCS------HHHHHHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEEC
T ss_pred EECCCCcceEecCC------CchHhHHHHHHhccCCEEEECC-CCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeeec
Confidence 35666899999875 2345566788899999999999 99999999888876554332 222233333333333
Q ss_pred CCcccHHHHHHHHHcC-CcEEEEcccCC-CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCcc
Q 010547 174 ENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 251 (507)
Q Consensus 174 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~ 251 (507)
........+.+....+ ...++.+.... ...+........+....+.++..+..+..|++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------------- 142 (343)
T d2eg6a1 78 TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHA--------------- 142 (343)
T ss_dssp CTTCCHHHHHHHHHTTSEEEEEECCCCTTSCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCT---------------
T ss_pred cCCCChhhhhhhhhccccccccccccchhccccccccchHHHHHHHHHHHHhCchhhhcCccccc---------------
Confidence 3333344444444443 44556554322 122334566778888999999999999999875432
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCC
Q 010547 252 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331 (507)
Q Consensus 252 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~ 331 (507)
.....+...+...+.+.+.+.... +.++|+.|++++ .+++.++ +.+..+++++||||+.++.+++
T Consensus 143 ----~~~~~~~eae~~~~~~~~~l~~~~-------~~~~Hi~HiSt~-~~v~~ir---~~~~~vt~EvtPHhL~L~~~d~ 207 (343)
T d2eg6a1 143 ----DIDIFDREARFIESVMEPLRQRLT-------ALKVVFEHITTK-DAADYVR---DGNERLAATITPQHLMFNRNHM 207 (343)
T ss_dssp ----TSCGGGHHHHHHHHTHHHHHHHCT-------TCCEEECSCCSH-HHHHHHH---TSCTTEEEEECHHHHHCCHHHH
T ss_pred ----cccccchhhhhHHHHHHHHHhhcc-------CceEEEEecchh-HHHHHHH---hcCCCcceeecCcHHHhhhhhh
Confidence 222344555666677777777744 889999999998 7766664 5667799999999999999887
Q ss_pred CC--CCCceeEcCCCCChhhHHHHHHHHhcCCe-eEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhc
Q 010547 332 PD--GDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 408 (507)
Q Consensus 332 ~~--~~~~~~~~p~~~~~~~~~~~~~~l~~G~~-~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 408 (507)
.. ....++++||+|+..++..+++.+.+|.. +.++|||+|.....+. +...+.|+.|++..++.++....+
T Consensus 208 ~~~~~~~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~-----~~~~~~g~~g~e~~l~l~l~~~~~- 281 (343)
T d2eg6a1 208 LVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKE-----SSCGCAGCFNAPTALGSYATVFEE- 281 (343)
T ss_dssp HTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHS-----STTBCCCCCCTTTHHHHHHHHHHH-
T ss_pred hcCCCccceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCccccccc-----ccccccccCChHHHHHHHHHHHHh-
Confidence 54 34678999999999999999887777655 7899999999876663 445677899999999988876554
Q ss_pred CCCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCcccc-CcEEeeEE
Q 010547 409 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL-GRRLSGKV 479 (507)
Q Consensus 409 gls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V 479 (507)
.+++++++++.|.|||++||| ++.|.| ++. +..|.++.. .+.++.. ++||. |..+.++|
T Consensus 282 ~~~L~~lv~~~S~nPaki~gL~~~kg~I--------~~~--~~~~~v~~~-~~~sk~~-~tPf~~g~~l~w~v 342 (343)
T d2eg6a1 282 MNALQHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAES-IALTDDT-LVPFLAGETVRWSV 342 (343)
T ss_dssp TTCGGGHHHHHHTHHHHHHTCCCCCSEE--------EEE--CCCEECCSC-EECSSSE-ECCTTTTCEESCEE
T ss_pred cCCHHHHHHHHhHhHHHHhCCCCCCCeE--------EEe--cCceecCcc-ccCCCCC-eEecCCCCccceee
Confidence 569999999999999999999 666643 344 466888777 7788888 99999 77777766
|
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.8e-15 Score=144.03 Aligned_cols=166 Identities=15% Similarity=0.018 Sum_probs=95.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCC
Q 010547 205 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284 (507)
Q Consensus 205 ~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 284 (507)
....+++.++++.+.|++++.++.+|+.+.......+.... ... ........+.+
T Consensus 140 ~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~-----------~~~----------~~~~~~~~~~g---- 194 (313)
T d2uz9a2 140 SLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLY-----------PSY----------KNYTSVYDKNN---- 194 (313)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHS-----------TTS----------SSHHHHHHHTT----
T ss_pred cccccHHHHHHHHHHhhccccceeeehhcchhHHHHHHHhh-----------ccc----------CChHHHHHHcC----
Confidence 34678899999999999999999999865432111110000 000 01111111110
Q ss_pred CCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeE
Q 010547 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 364 (507)
Q Consensus 285 ~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~ 364 (507)
..+.++.+.|+..- +.+.++.+++.|..+.. ||........ ...++.++++.|++++
T Consensus 195 ~l~~~~~~~H~~~l--~~~e~~~l~~~g~~~~~--~P~~~~~~~~-------------------~~~~v~~l~~~Gv~va 251 (313)
T d2uz9a2 195 LLTNKTVMAHGCYL--SAEELNVFHERGASIAH--CPNSNLSLSS-------------------GFLNVLEVLKHEVKIG 251 (313)
T ss_dssp CCSTTEEEEECTTC--CHHHHHHHHHHTCEEEE--CHHHHHHTTC-------------------CCCCHHHHHHTTCEEE
T ss_pred CcCCcceEEeeeec--chhHHHHHhhhcccccc--cchhhhhccc-------------------cccchhhhhccCceEE
Confidence 11567788888762 33456666677765544 6643211100 0113567888999999
Q ss_pred EeCCCCCCChhhhccccCCccccCCCCchhhhH-HHHHHHHHH------hcCCCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR------KYGVTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 365 lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~------~~gls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
+|||..+.... +.++.. ......... ..+++++|+++++|.|||++||+ +++||
T Consensus 252 lGTD~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~e~l~~AT~ngA~aLg~~~~iGS 313 (313)
T d2uz9a2 252 LGTDVAGGYSY----------------SMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGN 313 (313)
T ss_dssp ECCCTTTSCCC----------------CHHHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred EeCCCCCCCCC----------------CHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 99997543211 111110 111111111 23589999999999999999999 66886
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=3.5e-15 Score=141.44 Aligned_cols=261 Identities=14% Similarity=0.064 Sum_probs=133.0
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCC-CCHHHHHHHHHHHhcCceeeEEEecc-ccCCCcccHHHHHHHHHcCCcEEEEccc
Q 010547 121 GTKAAAAGGITTLIDMPLNSDPST-ISTETLKLKVDAAEKRIYVDVGFWGG-LVPENAYNASALEALLNAGVLGLKSFMC 198 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 198 (507)
..+.++++||||+.++. +..... ..................+....... .........+...+..+.+.........
T Consensus 52 ~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (320)
T d1ra0a2 52 TLKWQIANGIQHVRTHV-DVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPH 130 (320)
T ss_dssp HHHHHHHTTEEEEEEEE-ECCSTTCHHHHHHHHHHHHHTTTCEEEEEEECTTCSSSSTTHHHHHHHHHHTTCSEECCCGG
T ss_pred HHHHHHhCCeEEEEecc-ccccchHHHHHHHHHHHHhhcccccccccccccccccCcHHHHHHHHHHHHhcccccccCCC
Confidence 35678999999999875 222221 11222222222223333333322211 1222233455666667766665543211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHh
Q 010547 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 278 (507)
. ...+..+.+.++.+++.|++.+.++.+|+....... . ...............
T Consensus 131 ~---~~~~~~~~~~~~~~~~~A~~~g~~~~~h~~~~~~~~-----------------------~-~~~~~~~~~~~~~~~ 183 (320)
T d1ra0a2 131 F---EFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQ-----------------------S-RFVETVAALAHHEGM 183 (320)
T ss_dssp G---SSSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTT-----------------------C-CHHHHHHHHHHHHTC
T ss_pred C---CCCccccHHHHHHHHHHHHHcCCCeeeeecccchhH-----------------------H-HhhhhHHHHHHHhhc
Confidence 1 111224578899999999999999999985433210 0 011111111111110
Q ss_pred hccCCCCCCceEEEEecC-----ChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHH
Q 010547 279 TRTDGPAEGAHLHIVHLS-----DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 353 (507)
Q Consensus 279 ~~~~~~~~g~~~~~~h~~-----~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 353 (507)
.......|+. ......+.+....+.|+.+.. +|.....-.+.... .+. .......
T Consensus 184 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~p~~~~~~~~~~~~-------~~~---~~~~~~~ 243 (320)
T d1ra0a2 184 --------GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVA--NPLVNIHLQGRFDT-------YPK---RRGITRV 243 (320)
T ss_dssp --------GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEE--CHHHHHHHTTTTCC-------SSC---CCCCCCH
T ss_pred --------ccccccccceeccccchhhhHHHHHHhhhcCcEEEe--ccchhhhhcccccc-------ccc---ccccCch
Confidence 2223344442 111445556667777766544 44211110000000 000 0001134
Q ss_pred HHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCCCCC
Q 010547 354 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSK 432 (507)
Q Consensus 354 ~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~gls~~~al~~~T~n~A~~lgl~~~ 432 (507)
.++...|+.++++||......... .....++. +...+..... .++|++|+++++|.|||++||+++
T Consensus 244 ~~~~~~G~~v~~gtd~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~s~~eal~~aT~ngA~aLgl~~- 310 (320)
T d1ra0a2 244 KEMLESGINVCFGHDGVFDPWYPL-----------GTANMLQV-LHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQD- 310 (320)
T ss_dssp HHHHHTTCCEEECCBCSSBTTBSC-----------CCCCHHHH-HHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCSS-
T ss_pred hhHhhcCceEeecCCcCCCCCCCC-----------CChhHHHH-HHHHHHHhccCCCCCHHHHHHHHHHHHHHHhCCCC-
Confidence 577888999999999764322110 01111111 2222222222 348999999999999999999966
Q ss_pred CccccCCCCc
Q 010547 433 GAIAIGNHAD 442 (507)
Q Consensus 433 G~I~~G~~AD 442 (507)
|+|++||.||
T Consensus 311 Gsi~~Gk~AD 320 (320)
T d1ra0a2 311 YGIAAGNSAN 320 (320)
T ss_dssp CSSCTTSBCC
T ss_pred CccCCCCCcC
Confidence 9999999998
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.62 E-value=7.6e-16 Score=147.48 Aligned_cols=283 Identities=15% Similarity=0.116 Sum_probs=171.3
Q ss_pred ceeecccccCCCCCC-------CC-------CChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceee
Q 010547 99 GLIDVHAHLDDPGRT-------EW-------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164 (507)
Q Consensus 99 GfID~H~H~~~~~~~-------~~-------~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 164 (507)
||||+|+|+...... .+ +......+.+.++|||+++++. +.+.......+....+.........
T Consensus 16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~--~~~~~~d~~~l~~~~~~~~~~~~~~ 93 (331)
T d1i0da_ 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVS--TFDIGRDVSLLAEVSRAADVHIVAA 93 (331)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECC--CGGGTCCHHHHHHHHHHHTCEEECE
T ss_pred CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcC--CCCCcCCHHHHHHHHHhcCCCEEEE
Confidence 999999999643221 11 1223345667889999999874 2233345666666666555555555
Q ss_pred EEEeccccCC-CcccHHHHHHHH----HcC-------CcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 010547 165 VGFWGGLVPE-NAYNASALEALL----NAG-------VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (507)
Q Consensus 165 ~~~~~~~~~~-~~~~~~~~~~~~----~~g-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 232 (507)
++++...... .....+.+.... ..+ ...++.+.... ......+.+++.++.+++.+.++.+|+.
T Consensus 94 ~g~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~g~pv~~h~~ 169 (331)
T d1i0da_ 94 TGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGK----ATPFQELVLKAAARASLATGVPVTTHTA 169 (331)
T ss_dssp EECCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSS----CCHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred EEEecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeecccccc----ccHHHHHHHHHHHHHHHHhCCeEEeecc
Confidence 5443211110 011223333222 111 12222221110 0012245577888899999999999985
Q ss_pred CcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCC
Q 010547 233 MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 312 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g 312 (507)
.... +...+.+.+.... ....++++.|++.. ...+.++.++..|
T Consensus 170 ~~~~----------------------------~~~~~~~~~~~~~-------~~~~~~~i~H~~~~-~~~~~~~~~~~~g 213 (331)
T d1i0da_ 170 ASQR----------------------------DGEQQAAIFESEG-------LSPSRVCIGHSDDT-DDLSYLTALAARG 213 (331)
T ss_dssp GGGT----------------------------HHHHHHHHHHHTT-------CCGGGEEECSGGGC-CCHHHHHHHHHTT
T ss_pred chhh----------------------------hhhhhhhhhhhcc-------cCCcceEEEecCCc-chHHHHHHHHhcC
Confidence 4321 2223334433333 22667899999876 7788999999999
Q ss_pred CCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCe--eEEeCCCCCCChhhhccccCCccccCCC
Q 010547 313 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDEGNFLKAWGG 390 (507)
Q Consensus 313 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~--~~lgtD~~~~~~~~~~~~~~~~~~~~~~ 390 (507)
..+.++.+++++.+........+...+.+| ......+++++.+|.. ++++||+......... .+.......+
T Consensus 214 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~l~~g~~d~i~~~tD~p~~~p~~~~--~~~~~~~~~g 287 (331)
T d1i0da_ 214 YLIGLDHIPHSAIGLEDNASASALLGIRSW----QTRALLIKALIDQGYMKQILVSNDWLFGFSSYVT--NIMDVMDRVN 287 (331)
T ss_dssp CEEEECCTTCCCTTCTTCHHHHHHHCSSCH----HHHHHHHHHHHHTTCGGGEEECCCCCSEECSSST--THHHHHHHHC
T ss_pred CceeecceeeeccchhhhccccCCccCCCh----hhhHHHHHHHHHhcCCCCEEECCCCCCccccccc--CCCccccccC
Confidence 999999999988776554433333333332 2233455677777763 4899998653321110 0011222335
Q ss_pred CchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 391 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 391 ~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
..|+...+..++..+.+.|+|++++.++.|.||||+||+
T Consensus 288 ~~g~~~~l~~~~~~~~~~gis~e~i~~i~~~NParlf~l 326 (331)
T d1i0da_ 288 PDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSP 326 (331)
T ss_dssp TTGGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 677787788888888899999999999999999999999
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=7.1e-16 Score=114.38 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=56.1
Q ss_pred eEEEEecEEECCCCce-eeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCC
Q 010547 44 QYWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~-~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~ 110 (507)
+++|+|++|+|++++. +++|+|+||+|.+|++..+.+ ++.++||++|++|+|||||.|+|....
T Consensus 1 M~al~n~rI~dg~~~~~~~~i~i~~g~I~~Ig~~~~~p---~~~~viDl~G~~l~PGlid~hvH~~~~ 65 (85)
T d1yrra1 1 MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELP---PEIEQRSLNGAILSPTLAAGKVANLTA 65 (85)
T ss_dssp CEEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSC---TTCCEEECTTCEEEESCCTTSBCCEEE
T ss_pred CeEEEeeEEECCCCcEeccEEEEeccEEEEEccccccc---ceeEEEecCCcEEEcccEecceeeccc
Confidence 3689999999998854 788999999999999887665 378999999999999999999997543
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.1e-15 Score=118.29 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=68.9
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCCCCCCCChhH
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~~~~~~~~~~ 120 (507)
.+..++|+|++|++++.....+|+|+||||++|+++.+.+.. ++.++||++|++|+|||||+|.|....... + .
T Consensus 6 ~~~~llikna~i~~~~~~~~~dI~I~~g~I~~I~~~~~~~~~-~~~~vID~~G~~v~PG~ID~H~h~~~~~~p--~---~ 79 (105)
T d1onwa1 6 AAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIV-PNCTVVDLSGQILCPEILPGNDADLLVMTP--E---L 79 (105)
T ss_dssp GGCCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSS-SSCEEEECTTCEEEESCCTTSBCCEEEECT--T---C
T ss_pred cCCCEEEECcEEEcCCCCeeeeEEEECCEEEEeccCcccccC-CCCeEEcCCCCEEeCCEeecccCcceecCC--C---c
Confidence 456789999999999988889999999999999988765433 367999999999999999999875432110 0 0
Q ss_pred HHHHHHhCCceEEEeC
Q 010547 121 GTKAAAAGGITTLIDM 136 (507)
Q Consensus 121 ~~~~~l~~GvTt~~~~ 136 (507)
..++.+.+|+|++.+.
T Consensus 80 ~~~~~~~~G~~~v~~~ 95 (105)
T d1onwa1 80 RIEQVYARGKLMVKDG 95 (105)
T ss_dssp CEEEEEETTEEEEETT
T ss_pred chHHHhhcceEEeccC
Confidence 1223357888888754
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.59 E-value=3.2e-15 Score=143.56 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCC
Q 010547 207 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286 (507)
Q Consensus 207 ~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (507)
..+++.+....+.+++.+.++.+|+............ . .... ........ . ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~------------~-~~~~------~~~~~~~~-~-------~~ 208 (336)
T d2paja2 156 SISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYS------------M-YGKS------PVAFCGEH-D-------WL 208 (336)
T ss_dssp SSCHHHHHHHHHHHHHTTCEEEEECC--------------------------CCC------HHHHHHHT-T-------CC
T ss_pred ccCHHHHHHHHhhhhccCCceeeeccccchhhHHHHH------------h-cCCc------cccccccc-c-------cc
Confidence 4679999999999999999999998554321100000 0 0000 01111111 1 11
Q ss_pred CceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEe
Q 010547 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 366 (507)
Q Consensus 287 g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lg 366 (507)
+......|+.. ...+.++.+...+..+. +||...... + ...+ .+.++++.|+.+++|
T Consensus 209 ~~~~~~~h~~~--~~~~~~~~l~~~~~~~~--~~p~~~~~~-------~---~~~~---------~~~~l~~~Gv~valG 265 (336)
T d2paja2 209 GSDVWYAHLVK--VDADEIALLAQTGTGVA--HCPQSNGRL-------G---SGIC---------PVREMADAGVPVSIG 265 (336)
T ss_dssp STTEEEESCCS--CCHHHHHHHHHHTCEEE--ECHHHHHCC------------------------CCTTHHHHTCCEEEC
T ss_pred cccccccccee--cchHHHHHHhhccccce--eccchhhcc-------C---cccc---------chhhHHhcCCeEEEE
Confidence 55677888766 33344445555665443 355322111 0 0112 223557779999999
Q ss_pred CCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH-----------------HHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 367 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-----------------YGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 367 tD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
||..+++...++.. ++.+..+.. .....++|++|+++++|.|||++||+
T Consensus 266 TD~~~s~~~~d~~~--------------emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal~~aT~~gA~aLgl 331 (336)
T d2paja2 266 VDGAASNEAADMIS--------------EVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGL 331 (336)
T ss_dssp CCHHHHCSCCSHHH--------------HHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTC
T ss_pred cCCCCCCCcccHHH--------------HHHHHHHHHHHhhccccccccccccccCCCCCCCHHHHHHHHHHHHHHHhCc
Confidence 99654332211100 001111110 12234699999999999999999999
Q ss_pred CCCCc
Q 010547 430 VSKGA 434 (507)
Q Consensus 430 ~~~G~ 434 (507)
+++|+
T Consensus 332 d~iGk 336 (336)
T d2paja2 332 DEVGK 336 (336)
T ss_dssp TTSSC
T ss_pred cccCC
Confidence 76663
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.58 E-value=8.2e-16 Score=146.16 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=93.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCccc-chhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhcc
Q 010547 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281 (507)
Q Consensus 203 ~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~ 281 (507)
......+++.++++.+.+++++.++.+|+.+... ........+ ..+. ..+...+.+.
T Consensus 136 ~~~~~~~~e~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~~~~~-------------~~~~---------~~~~~~~~g~ 193 (310)
T d2i9ua2 136 RFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHK-------------KSNF---------YGEVYDKFGL 193 (310)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHCT-------------TCSS---------HHHHHHHTTC
T ss_pred cCCCccCHHHHHHHHHHhhccccceeehhccchHHHHHHHHHhc-------------cccc---------HHHHHHhcCC
Confidence 3345678999999999999999999999865332 111111000 0010 0011111100
Q ss_pred CCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC
Q 010547 282 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361 (507)
Q Consensus 282 ~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~ 361 (507)
....++.+.|+.. .+.+.++.+++.|+.+. +||..-... . . ...++.++++.|+
T Consensus 194 ---~~~~~~~~~H~~~--~~~~~i~~la~~g~~vv--~cP~sn~~l-----~-~-------------g~~pv~~l~~~Gv 247 (310)
T d2i9ua2 194 ---FGNTPTLMAHCIH--SSKEEINLIKRNNVTIV--HCPTSNFNL-----G-S-------------GMMPVRKYLNLGI 247 (310)
T ss_dssp ---SSSSCEEEEECCS--CCHHHHHHHHHTTCEEE--ECHHHHHHT-----T-C-------------CCCCHHHHHHTTC
T ss_pred ---ccCCceeeeeeee--echhHHHHHHhcCCEEE--Eeecccccc-----c-C-------------CcccccchhccCc
Confidence 1123466678765 33456667778887654 477321100 0 0 0113567888999
Q ss_pred eeEEeCCCCCCChhhhccccCCccccCCCCchhhh-HHHHHHHHH-------HhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 010547 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVTWSYG-------RKYGVTLEQLASWWSERPAKLAGQVSKG 433 (507)
Q Consensus 362 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-------~~~gls~~~al~~~T~n~A~~lgl~~~G 433 (507)
++++|||..+.+... + ++. .+....... ....++++|+++|+|.|+|++||+ +|
T Consensus 248 ~v~lGTD~~~~~~~d-m---------------~~~m~~a~~~~~~~~~~~~~~~~~l~~~e~l~~aT~~gA~alGr--iG 309 (310)
T d2i9ua2 248 NVVLGSDISAGHTCS-L---------------FKVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFGK--VG 309 (310)
T ss_dssp EEEECCCBTTBCCSC-H---------------HHHHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTSS--CS
T ss_pred eEEEecCCCCCCCCC-H---------------HHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhcC--CC
Confidence 999999976543211 1 111 111111111 123489999999999999999993 66
Q ss_pred c
Q 010547 434 A 434 (507)
Q Consensus 434 ~ 434 (507)
|
T Consensus 310 S 310 (310)
T d2i9ua2 310 S 310 (310)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.58 E-value=2.9e-16 Score=129.19 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=78.3
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCC-------CCCCcEEecCCCEEecceeecccccCCCCCC
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT 113 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~-------~~~~~viD~~g~~v~PGfID~H~H~~~~~~~ 113 (507)
...+++|+|++|+|+.++.++||.|+||||+.||+...+... ..+.++||++|++|+||+||+|+|+..+. .
T Consensus 63 ~~lDlvI~n~~Ivd~~Gi~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~~p~-~ 141 (181)
T d1ejxc1 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLVV-W 141 (181)
T ss_dssp GSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCCEEE-E
T ss_pred ccccEEEEccEEcCCCCcEEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEeeee-e
Confidence 356999999999999999999999999999999986543211 13688999999999999999999998863 3
Q ss_pred CCCChhHHHHHHHhCCceEEEeCCCCCCCCC
Q 010547 114 EWEGFPSGTKAAAAGGITTLIDMPLNSDPST 144 (507)
Q Consensus 114 ~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~ 144 (507)
..+.+......++.+|++.+..++ ++.+..
T Consensus 142 ~~eal~sG~tt~igGG~~~~gpm~-gTnATt 171 (181)
T d1ejxc1 142 SPAFFGVKPATVIKGGMIAIAPMG-DINASI 171 (181)
T ss_dssp CGGGTTTSCSEEEETTEEEEEEEC-CTTSSS
T ss_pred ehhhhccchheEEeCCceEEEECC-CCCCCC
Confidence 344455545556667776666665 555443
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=4.9e-14 Score=130.88 Aligned_cols=269 Identities=16% Similarity=0.145 Sum_probs=132.7
Q ss_pred ceeecccccCCCCCC---CCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccC--
Q 010547 99 GLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-- 173 (507)
Q Consensus 99 GfID~H~H~~~~~~~---~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (507)
||||+|+|+..++.. ..+.....++.++++||||+++++ ++.+.....+.+....+.........+....+...
T Consensus 1 GlID~HvHl~~~~~~~~~~~~~~~~~~~~~l~~GvTTv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (284)
T d1onwa2 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPS 79 (284)
T ss_dssp CEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEECC-CSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSC
T ss_pred CEEEeccCCCCCCCCcccchhhHHHHHHHHHhCCeEEEecCC-CCCChHhHHHHHHHHHHHHhhcCeeEEEecccccCCc
Confidence 899999999765433 334455568889999999999998 77777777777777766665444343333222211
Q ss_pred -CCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHH------HHHHHHHhcCCcEEEecCCcccchhhhhcccC
Q 010547 174 -ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK------EGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 246 (507)
Q Consensus 174 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~ 246 (507)
............... ..+....... ..........+. +........+.++..|......
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 145 (284)
T d1onwa2 80 RTITGSVEKDVAIIDR-VIGVKCAISD---HRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKK---------- 145 (284)
T ss_dssp CCSSSCHHHHHHHCTT-EEEEEEEESS---TTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTT----------
T ss_pred ccccccchhhhhccch-hhhhhhhhHH---HHhhccchHHHHhHHHHHHHHhhccccCCceeccccccHH----------
Confidence 111222222222111 1122221110 011122222222 2233344456677777532211
Q ss_pred cCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCce---EEEEecCChhHHHHHHHHHHhCCCCEEEeccccc
Q 010547 247 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH---LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323 (507)
Q Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~---~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~ 323 (507)
.++...+.+... +.. .+..+.................+..+....+...
T Consensus 146 ---------------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (284)
T d1onwa2 146 ---------------------ALQPIYDLLENC-------DVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDE 197 (284)
T ss_dssp ---------------------TTHHHHHHHHTC-------CCCGGGEEEECGGGSHHHHHHHHHHHHTTCCEEEETTCCS
T ss_pred ---------------------HHHHHHHHHHhc-------CCEEEEecccccccccccHHHHHHHHhcCCeehhhccCCC
Confidence 113334444432 222 2222222111222233333344444433222110
Q ss_pred ccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHH
Q 010547 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 403 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 403 (507)
. .........+.+.......+.++||+.......+.. ......+..+....+..++.
T Consensus 198 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 254 (284)
T d1onwa2 198 P-------------------VAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDE----GNLTHIGVAGFETLLETVQV 254 (284)
T ss_dssp S-------------------SCHHHHHHHHHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHHH
T ss_pred c-------------------cCCHHHHHHHHHhCCCCceEEEEecccccccccccc----ccccCCCCChHHHHHHHHHH
Confidence 0 001111222222222344678999987654433221 22223345556666676666
Q ss_pred HHHhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 010547 404 YGRKYGVTLEQLASWWSERPAKLAGQVSKG 433 (507)
Q Consensus 404 ~~~~~gls~~~al~~~T~n~A~~lgl~~~G 433 (507)
.+.+.|+|++++++++|.|||++|||+++|
T Consensus 255 ~~~~~gls~~~al~~aT~npAr~lGL~~kG 284 (284)
T d1onwa2 255 LVKDYDFSISDALRPLTSSVAGFLNLTGKG 284 (284)
T ss_dssp HHHHHCCCHHHHHGGGTHHHHHHTTCTTCS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 677889999999999999999999997777
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.58 E-value=2.7e-15 Score=117.68 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=57.1
Q ss_pred cceEEEEecEEECCCC----ceeeeEEEe-CCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCCCC
Q 010547 42 YNQYWLTSKRIVTPKG----VISGAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~----~~~~~I~I~-dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~~~ 111 (507)
+..++|+|++|+|+++ +.+++|+|+ ||||.+||++.+.+. +.+.++||++|++|||||||+|+|+...+
T Consensus 3 ~~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~~-~~~~~viD~~Gk~v~PGlid~H~Hl~~~g 76 (118)
T d2p9ba1 3 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSI-PAEYHYLDGTGKIVMLEVGKSADLLVLNA 76 (118)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCC-CTTCEEEECTTCEEECCTTSBCCEEEESS
T ss_pred CccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEcccccccc-cceeEEEeccCcEEEeeecceeEEEEecC
Confidence 4458999999999865 358999996 799999998765432 24789999999999999999999997654
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=99.57 E-value=3.5e-14 Score=128.04 Aligned_cols=265 Identities=22% Similarity=0.297 Sum_probs=163.4
Q ss_pred ceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCC--------CHHHHHHHHHHHhcCceeeEEEecc
Q 010547 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--------STETLKLKVDAAEKRIYVDVGFWGG 170 (507)
Q Consensus 99 GfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (507)
|-||+|+|+..+ +....++..|+||++.. ++.|... ..-.+...+++.+ ..++++.+.+
T Consensus 1 GgiDtHvHfi~P---------qq~~~al~sGiTT~~Gg--GtGpa~gt~att~tpG~~~i~~ml~a~d-~~P~N~g~~g- 67 (390)
T d4ubpc2 1 GGIDTHVHFINP---------DQVDVALANGITTLFGG--GTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILG- 67 (390)
T ss_dssp CEEEEEEECCCT---------THHHHHHHTTEEEEEEE--CCSSCHHHHHSSCCCHHHHHHHHHHHHT-TCSSEEEEEE-
T ss_pred CCccccccccCH---------HHHHHHHhcCCeeeecC--ccCCCCCCCCcccCCCHHHHHHHHHhhh-hCCcceeeee-
Confidence 679999998874 34688999999999976 4445321 1335555555444 5677888754
Q ss_pred ccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc
Q 010547 171 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (507)
..+....+.+.+..++|+.|+|. ++.+..++..+...+..|.+++++|.+|.....+
T Consensus 68 --kGn~s~~~~l~eqi~aGa~GlKi-------HEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE-------------- 124 (390)
T d4ubpc2 68 --KGHGSSIAPIMEQIDAGAAGLKI-------HEDWGATPASIDRSLTVADEADVQVAIHSDTLNE-------------- 124 (390)
T ss_dssp --ECCCSSHHHHHHHHHHTCCEEEE-------EGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCS--------------
T ss_pred --ccccCChHHHHHHHHhhhheeec-------ccccccCHHHHHHHHHHhhccCceEEEecCCccc--------------
Confidence 33445567889999999999999 5566899999999999999999999999865432
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH---HHHHHHHHHhCCCCEEEeccccccccc
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS---SLDLLMEAKTNGDSITVETCPHYLAFS 327 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~---~~~~i~~~~~~g~~i~~~~~~~~~~~~ 327 (507)
...++..+..+. |..+|..|...+ . ..+.++.+...++. ...+.| -..++
T Consensus 125 ---------------~gfve~T~~a~~---------gRtiH~~HtEGa-GGGHaPDii~~~g~~nvL-psSTnP-T~Pyt 177 (390)
T d4ubpc2 125 ---------------AGFLEDTLRAIN---------GRVIHSFHVEGA-GGGHAPDIMAMAGHPNVL-PSSTNP-TRPFT 177 (390)
T ss_dssp ---------------SCCHHHHHHHHT---------TCCEEETTTTST-TSSSTTTGGGGGGSTTEE-EBCCST-TSSCB
T ss_pred ---------------ceehhhHHHHhC---------CceeecccCCCC-CCCCCchhHHhcCCCccc-CCCCCC-CCCCc
Confidence 112467777766 888999998743 1 12233333222221 111122 12222
Q ss_pred ccCCCCCCCce----eEcCCCCChhhHH---------H--HHHHH-hcCCeeEEeCCCCCCChhhhccccCCccccCCCC
Q 010547 328 AEEIPDGDTRF----KCAPPIRDAANKE---------K--LWEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 391 (507)
Q Consensus 328 ~~~~~~~~~~~----~~~p~~~~~~~~~---------~--~~~~l-~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~ 391 (507)
.+.+...-... ..+|.+ +.+.. . .-..| ..|.+..++||..+ +
T Consensus 178 ~nt~~EhldM~MvcHhL~~~i--peDvafAesRiR~eTiaAEdvLHD~GaiSi~sSDsQa-------------------M 236 (390)
T d4ubpc2 178 VNTIDEHLDMLMVCHHLKQNI--PEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALA-------------------M 236 (390)
T ss_dssp TTHHHHHHHHHHHHHTCCTTS--HHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTT-------------------S
T ss_pred cCchhhhcCeEEeeccCCCCC--hhhHHHHhhcccchhhhhHHHhhhcCceeeeccCccc-------------------c
Confidence 22111100011 112221 11111 1 11122 24888889999652 2
Q ss_pred chhhhHHHHHHHHHHh----cC-----------CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEc
Q 010547 392 SSLQFVLPVTWSYGRK----YG-----------VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWE 447 (507)
Q Consensus 392 ~~~~~~l~~~~~~~~~----~g-----------ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld 447 (507)
+.+.+.....|..+.+ .| .....-+...|.|||.+-|+ +.+||||+||.||.+++.
T Consensus 237 GRvgEvi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~ 308 (390)
T d4ubpc2 237 GRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIH 308 (390)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHH
T ss_pred cccchHHHhHHHHHHHHHHhccCCCCccccCCCchhhhcccccccChhHhcCcccccCcccCCcccCCcccc
Confidence 2233334444444322 12 33456777889999999999 889999999999955444
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=1.1e-14 Score=136.09 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=119.8
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCCcccHHHHHHHHH--cCCc-EEEEccc
Q 010547 122 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN--AGVL-GLKSFMC 198 (507)
Q Consensus 122 ~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-~~~~~~~ 198 (507)
..+++++||||+.|+. ...+.+....+....+..+...... .........++..++.+ .+.. .+...+.
T Consensus 51 ~~e~l~~G~Ttv~d~~-------~~~~~~~~a~~~~g~r~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~i~~~~~ 122 (281)
T d1p1ma2 51 QMEMARHGIAGFVDMY-------FHEEWIAKAVRDFGMRALLTRGLVD-SNGDDGGRLEENLKLYNEWNGFEGRIFVGFG 122 (281)
T ss_dssp HHHHHTTTEEEEEEEE-------SSHHHHHHHHHHHCCEEEEEEEECC-BTTBCTTHHHHHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHhhCCeEEEeeec-------cCcHHHHHHHHHhCCceEEeeeeee-cCccccccHHHHHHHHHHhcCccCceEEEEe
Confidence 4467899999999874 1234444444433333222222211 11111222222222221 1111 1111121
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHh
Q 010547 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 278 (507)
+ .....++++.++.+.+.|++++.++.+|+.+... + ..|. ..+.++
T Consensus 123 ~---~~~~~~~~~~~~~~~~~A~~~~~~i~iH~~e~~~----------e-----------~~~~-------~~l~~~--- 168 (281)
T d1p1ma2 123 P---HSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSK----------E-----------EYDL-------EDILNI--- 168 (281)
T ss_dssp E---CCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTT----------C-----------CCCT-------HHHHTT---
T ss_pred c---ccchhhhhhhhHHHHHHHhccCccccccccCCcc----------c-----------chhH-------HHHHHc---
Confidence 1 3334678999999999999999999999844321 0 0010 111111
Q ss_pred hccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHh
Q 010547 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 358 (507)
Q Consensus 279 ~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 358 (507)
+ ..+.++.+.|+... +.+.++.+++.|.. ..+||..-..- + ....++.++++
T Consensus 169 ---g--~l~~~~~~~H~~~~--~~~di~~la~~~~~--vv~cP~sn~~l-------g------------~~~~~~~~~~~ 220 (281)
T d1p1ma2 169 ---G--LKEVKTIAAHCVHL--PERYFGVLKDIPFF--VSHNPASNLKL-------G------------NGIAPVQRMIE 220 (281)
T ss_dssp ---T--TTTSCEEEEECTTC--CGGGTTTTTTSSEE--EEECHHHHHHT-------T------------CCCCCHHHHHH
T ss_pred ---C--CCCccccccceeee--cHHHHHHHHhcCCc--cccccchhhhh-------c------------ccchhHHHHHh
Confidence 1 11666778888752 23356666666644 44477421110 0 00113567899
Q ss_pred cCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCC
Q 010547 359 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 359 ~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gls~~~al~~~T~n~A~~lgl~ 430 (507)
+|+.++||||+.+++...++.. ++.+...+...+ ...++++++++++|.|||++||++
T Consensus 221 ~Gv~v~LGTD~~~s~~~~d~~~--------------em~~a~~~~~~~~~~~~~~~~~l~~aT~~gA~aLGl~ 279 (281)
T d1p1ma2 221 HGMKVTLGTDGAASNNSLNLFF--------------EMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFK 279 (281)
T ss_dssp TTCEEEECCCCTTTTSCCCHHH--------------HHHHHHHHHHTTCTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred CCCeEEEECCCCCCCCCcCHHH--------------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 9999999999876653332211 111111121111 234899999999999999999993
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=4.3e-14 Score=127.44 Aligned_cols=260 Identities=23% Similarity=0.347 Sum_probs=162.5
Q ss_pred eecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCC-------C-HHHHHHHHHHHhcCceeeEEEecccc
Q 010547 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI-------S-TETLKLKVDAAEKRIYVDVGFWGGLV 172 (507)
Q Consensus 101 ID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (507)
||+|+|+..+ +....+|..|+||++.. ++.|... . .-.+...+++.+ ..++++.+.+
T Consensus 2 iDtHvHfi~P---------qq~~~al~sGiTT~iGg--GtGPa~Gt~att~tpg~~~i~~ml~a~d-~~P~N~g~~g--- 66 (389)
T d1e9yb2 2 IDTHIHFISP---------QQIPTAFASGVTTMIGG--GTGPADGTNATTITPGRRNLKWMLRAAE-EYSMNLGFLA--- 66 (389)
T ss_dssp EEEEEETTCT---------THHHHHHHTTEEEEEEE--CCSSCHHHHHCCCCCHHHHHHHHHHHHT-TSSSEEEEEE---
T ss_pred ccccccccCH---------HHHHHHHhcCCeEEecC--ccCCCCCCCccccCCChhHHHHHHHhhh-cCCcceeeee---
Confidence 8999998864 34688999999999976 3445321 1 334555555444 5678888754
Q ss_pred CCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
..+....+.+.+..++|+.|+|. ++.+..++..+...+..|.+++++|.+|.....+
T Consensus 67 kGn~s~~~~l~eqi~aGa~GlKi-------HEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE---------------- 123 (389)
T d1e9yb2 67 KGNASNDASLADQIEAGAIGFKI-------HEDWGTTPSAINHALDVADKYDVQVAIHTDTLNE---------------- 123 (389)
T ss_dssp ECCCSCHHHHHHHHHTTCSEEEE-------CGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCS----------------
T ss_pred ccCCCChHHHHHHHHhccceeec-------cccccCCHHHHHHHHHHHHhhCceEEecCCCccc----------------
Confidence 33444567889999999999999 6667899999999999999999999999865432
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH---HHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS---SLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~---~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
...++..+..+. |..+|..|...+ . ..+.++.+...++. ...+.| -..++.+
T Consensus 124 -------------~Gfve~T~~a~~---------gRtiH~~HtEGa-GGGHAPDii~~~~~~nvL-psSTnP-T~Pyt~n 178 (389)
T d1e9yb2 124 -------------AGCVEDTMAAIA---------GRTMHTFHTEGA-GGGHAPDIIKVAGEHNIL-PASTNP-TIPFTVN 178 (389)
T ss_dssp -------------SCCHHHHHHHHT---------TCCEEETTTTST-TSCSTTTGGGGGGSTTEE-EEECGG-GCSCBTT
T ss_pred -------------ccchhhHHHHhC---------CCcceeeecCCC-CCCCccHHHHHccCCCcc-CCCCCC-CCCcccc
Confidence 113567777777 888999998754 2 23444444333332 122223 2222222
Q ss_pred CCCCCCCceeEcCCCC--ChhhHH---------HH--HHHH-hcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhh
Q 010547 330 EIPDGDTRFKCAPPIR--DAANKE---------KL--WEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 395 (507)
Q Consensus 330 ~~~~~~~~~~~~p~~~--~~~~~~---------~~--~~~l-~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (507)
.+...-...+.+..+. .+.+.. .+ -..| ..|.+..++||..+ .+.+.
T Consensus 179 t~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sSDsqa-------------------MGRvg 239 (389)
T d1e9yb2 179 TEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQA-------------------MGRVG 239 (389)
T ss_dssp HHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTS-------------------SCCTT
T ss_pred cHHHhhchhhhhccCCCCCchhHHHHhhcccchhhhhHHHhhccCceeeecccccc-------------------cchhH
Confidence 2211111111121111 111111 11 1122 24999999999652 22233
Q ss_pred hHHHHHHHHHHh----cC-----------CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCc
Q 010547 396 FVLPVTWSYGRK----YG-----------VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHAD 442 (507)
Q Consensus 396 ~~l~~~~~~~~~----~g-----------ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~AD 442 (507)
+.....|..+.+ .| .-...-+...|.|||.+-|+ +.+||||+||.|+
T Consensus 240 Evi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~ 302 (389)
T d1e9yb2 240 EVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHH 302 (389)
T ss_dssp SHHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGS
T ss_pred HHHHHHHHHHHHHHHHhhcCCccCCCcchHHHHhhhhhcccChHHhcCchhccCccccccccc
Confidence 334444544322 12 33456778899999999999 8899999999774
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.49 E-value=1.3e-13 Score=128.86 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=46.0
Q ss_pred HHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-C
Q 010547 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-V 430 (507)
Q Consensus 353 ~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl-~ 430 (507)
+.++++.|+++++|||+.+..... .. +...++. +.+.|+|+.|||+++|.|||++||+ +
T Consensus 237 ~~~~~~~Gv~v~lGTD~~~~~~~~------------------~~-l~~~~~~~~~~~gl~~~eal~~aT~~~A~~LGl~~ 297 (301)
T d2puza2 237 VQALRDAGAEIALATDCNPGTSPL------------------TS-LLLTMNMGATLFRMTVEECLTATTRNAAKALGLLA 297 (301)
T ss_dssp HHHHHHHTCCEEECCCCCSSSCCB------------------CC-HHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred HHHHHHCCCeEEEEeCCCCCCCcc------------------ch-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc
Confidence 456788899999999965322110 00 3333343 3568999999999999999999999 7
Q ss_pred CCCc
Q 010547 431 SKGA 434 (507)
Q Consensus 431 ~~G~ 434 (507)
++||
T Consensus 298 ~~GS 301 (301)
T d2puza2 298 ETGT 301 (301)
T ss_dssp TSSS
T ss_pred CcCc
Confidence 7886
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.47 E-value=3e-13 Score=126.56 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-C
Q 010547 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-V 430 (507)
Q Consensus 353 ~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl-~ 430 (507)
+.++++.|+++++|||..+...... . +...++. +...|+|++|||+++|.|||++||+ +
T Consensus 236 ~~~l~~~Gv~v~lgTD~~~~~~~~~--------------~-----l~~~~~~a~~~~gl~~~eal~~aT~~~A~~lG~~~ 296 (300)
T d2bb0a2 236 ARAMIDEGVCVSLATDFNPGSSPTE--------------N-----IQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGE 296 (300)
T ss_dssp HHHHHHTTCCEEECCCBBTTTBCCC--------------C-----HHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred HHHHHHCCCEEEEEeCCCCCCCchh--------------h-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcch
Confidence 4577888999999999643211100 0 2223333 4578999999999999999999999 7
Q ss_pred CCCc
Q 010547 431 SKGA 434 (507)
Q Consensus 431 ~~G~ 434 (507)
++|+
T Consensus 297 ~~G~ 300 (300)
T d2bb0a2 297 EAGQ 300 (300)
T ss_dssp TSSC
T ss_pred hhCc
Confidence 7785
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.45 E-value=3.1e-14 Score=119.74 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=61.0
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEE---ecceeecccccCCCCC
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI---MPGLIDVHAHLDDPGR 112 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v---~PGfID~H~H~~~~~~ 112 (507)
||.+++|+|++|+|+++...++|+|+||||++|++...... ++++||++|++| +|||||+|+|+..+..
T Consensus 1 pm~dllikn~~v~~~~~~~~~di~i~~g~I~~ig~~~~~~~---~~~viDa~G~~V~p~~pg~~d~Hih~~~~~~ 72 (156)
T d2fvka1 1 PIYDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSL---GSEVIDAEGAFITPILPGVSDADLVIWYPDD 72 (156)
T ss_dssp CCEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGG---EEEEEECTTCEEEECCTTTSBCCEEEECCSS
T ss_pred CCccEEEECCEEECCCCCEEEEEEEECCEEEEecCCCCCCC---CCEEEECCCCEEeeecccccccceEEEeecc
Confidence 57899999999999999889999999999999998765442 678999999997 6999999999987643
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.44 E-value=7.6e-14 Score=107.82 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=51.5
Q ss_pred ceEEEEecEEECCCC--c-eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccc
Q 010547 43 NQYWLTSKRIVTPKG--V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~--~-~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H 106 (507)
++++|+|++|+|+.+ + .+.+|+|+||+|++|++....+ +++++||++|++|+|||||.|.|
T Consensus 1 t~~l~~n~~v~d~~~~~~~~~~~I~I~~g~I~~i~~~~~~~---~~~~vID~~G~~v~PGlid~h~~ 64 (102)
T d2r8ca1 1 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKS---SNAHVIDVKGKTIMPRIVPGAHA 64 (102)
T ss_dssp CEEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCC---SSCEEEECTTCEEEESCCTTSBC
T ss_pred CeEEEECeEEECCCCCCcccCcEEEEECCEEEEccccCCCC---CCCEEEeCCCCEEECceeeheee
Confidence 368999999999865 3 4679999999999999865443 37899999999999999987764
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.44 E-value=5.7e-14 Score=112.29 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=55.4
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccC
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~ 108 (507)
++++|+|++|+|+++..+++|+|+||||++|++... ++.++||++|++|+||+||+|+|+.
T Consensus 1 mDllikn~~v~~~~~~~~~di~I~dg~I~~ig~~~~-----~~~~~iDa~G~~v~Pg~i~~~~~~~ 61 (127)
T d1nfga1 1 MDIIIKNGTIVTADGISRADLGIKDGKITQIGGALG-----PAERTIDAAGRYVFPIAVGSDADIV 61 (127)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC-----CCSEEEECTTCEEEECSTTSBCCEE
T ss_pred CcEEEECCEEECCCCCEEEEEEEECCEEEEeeCCCC-----CceEEEEeeceEEeeecccccccce
Confidence 478999999999999889999999999999998754 2679999999999999999999974
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.43 E-value=8e-14 Score=111.88 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=53.2
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccC
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~ 108 (507)
++|+||+|+++++...+||+|+||+|++|++..+.+ ++++||++|++|+||+||.|+|+.
T Consensus 2 ~likn~~i~~~~~~~~~di~I~~g~I~~ig~~~~~~----~~~viDa~g~~v~Pg~i~~~~~~~ 61 (127)
T d1ynya1 2 KWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVN----GAEEIDATGCYVIPIAVGSDADIV 61 (127)
T ss_dssp EEEESCEEECSSCEEECEEEEETTEEEEEECC--------CCEEEECTTSEEEECSTTSBCCEE
T ss_pred EEEECcEEECCCCCEEEeEEEECCEEEEecCCCCCC----CCEEEEhhhceeecccccccchhh
Confidence 689999999999989999999999999999887654 679999999999999999999984
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=99.41 E-value=9.4e-13 Score=126.18 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=160.7
Q ss_pred ceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCC------------------CCCHHHHHHHHHHHh-c
Q 010547 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS------------------TISTETLKLKVDAAE-K 159 (507)
Q Consensus 99 GfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~------------------~~~~~~~~~~~~~~~-~ 159 (507)
||||+|+|...... ++ ......+++||||++...|+..+. .+..+.+..+++.++ .
T Consensus 1 GFID~HtH~D~~~~--~~---p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~ 75 (358)
T d1m7ja3 1 GFIDSHTHDDNYLL--KH---RDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAA 75 (358)
T ss_dssp CEEESSCCCTTHHH--HC---TTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHS
T ss_pred CceecCCCCchhhc--cC---CCCcccccCCCceEEEeCCCCCcccCCcccccchHHHhccCCCcCcCCHHHHHHHHHhc
Confidence 89999999764211 01 112456899999999876543221 122345566666665 3
Q ss_pred CceeeEEEecccc----------CCCc--c----cHHHHHHHHHcCCcEEEEcccCCCCCCCC--CCCHHHHHHHHHHHH
Q 010547 160 RIYVDVGFWGGLV----------PENA--Y----NASALEALLNAGVLGLKSFMCPSGINDFP--MTNASHIKEGLSVLA 221 (507)
Q Consensus 160 ~~~~~~~~~~~~~----------~~~~--~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~a~ 221 (507)
+..+++..+.+.. ...+ + ..+.+++.+++|+.|++.-..+ .| ..+.+++.++.+.++
T Consensus 76 ~~~~Nva~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y-----~P~~~A~~~El~~lak~~~ 150 (358)
T d1m7ja3 76 PPAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFY-----PPAAHASTEEIIEVCRPLI 150 (358)
T ss_dssp CCSSEEEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTS-----GGGTTCCHHHHHHHHTHHH
T ss_pred CCccceeeecccccccccccCcccccCCHHHHHHHHHHHHHHHhcCCcccccCCcc-----cccccCCHHHHHHHHHHHH
Confidence 4556766544321 1111 1 2345566677999999874322 22 368999999999999
Q ss_pred hcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh---
Q 010547 222 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--- 298 (507)
Q Consensus 222 ~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~--- 298 (507)
+++..+..|...... ...+.++.+++++++. |.++++.|+...
T Consensus 151 ~~g~~~~~h~r~~~~---------------------------~~~~~~~e~~~~a~~~-------g~~~~ish~~~~~~~ 196 (358)
T d1m7ja3 151 THGGVYATHMRDEGE---------------------------HIVQALEETFRIGREL-------DVPVVISHHKVMGKL 196 (358)
T ss_dssp HHTCEEEEECSCSST---------------------------THHHHHHHHHHHHHHH-------TSCEEECSCCCCSGG
T ss_pred hcCCeeeeeeccccc---------------------------cHHHHHHHHHHHHHHc-------CCceEecccccCCCc
Confidence 999999999854321 2445788899999987 999999998521
Q ss_pred -----hHHHHHHHHHHhCCCCEEEecccccccccc---cCCC-CCCCceeEcCC---CCCh-----------h-------
Q 010547 299 -----SSSLDLLMEAKTNGDSITVETCPHYLAFSA---EEIP-DGDTRFKCAPP---IRDA-----------A------- 348 (507)
Q Consensus 299 -----~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~p~---~~~~-----------~------- 348 (507)
...++.++.. +.|..++++..|.....+. +.+. .........+. +... .
T Consensus 197 ~~~~~~~~~~~~~~a-~~G~~i~~d~yPy~ag~t~l~~~~~~~~~~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~d 275 (358)
T d1m7ja3 197 NFGRSKETLALIEAA-MASQDVSLDAYPYVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPE 275 (358)
T ss_dssp GTTTHHHHHHHHHHH-HHHSCEEEEECSCSCEEEECCCCTTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHH
T ss_pred chhhHHHHHHHHHHH-hcCCCcceeecCccccccccchhhhhhccchhhhccccChhhccCcHHHHHHHcCCCHHHHHHH
Confidence 1233444444 4588899888775433222 1111 11111122221 1000 0
Q ss_pred -----------hHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH-HHHHhcC-CCHHHH
Q 010547 349 -----------NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYG-VTLEQL 415 (507)
Q Consensus 349 -----------~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~g-ls~~~a 415 (507)
..+.+.++++. -...+|||+.+......- .++.. ++.++ +++++.+ +|+++|
T Consensus 276 l~~~~~~~~~~~e~~v~~~l~~-p~~~igSDgga~~~~~hp-------------r~~gt-f~r~L~~~vRe~~~lsLeeA 340 (358)
T d1m7ja3 276 LQPAGAIYFMMDEPDVQRILAF-GPTMIGSDGLPHDERPHP-------------RLWGT-FPRVLGHYSRDLGLFPLETA 340 (358)
T ss_dssp HCSEEEEECCCCHHHHHHHHHS-TTEEECCCCCTTCSSCCT-------------HHHHH-HHHHHCCCCCCTCSSCHHHH
T ss_pred HhhccchhhcCCHHHHHHHHhC-CCceEEcCcccCCCCcCC-------------CCccc-HHHHHHHHhcCCCcCCHHHH
Confidence 01122233332 234788997654321100 01111 22223 3455555 899999
Q ss_pred HHHHhhchhHHhCCCCCC
Q 010547 416 ASWWSERPAKLAGQVSKG 433 (507)
Q Consensus 416 l~~~T~n~A~~lgl~~~G 433 (507)
++..|..||+.|||+++|
T Consensus 341 I~k~T~~pA~~~Gl~dRG 358 (358)
T d1m7ja3 341 VWKMTGLTAAKFGLAERG 358 (358)
T ss_dssp HHTTTHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 999999999999997776
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.41 E-value=2.1e-13 Score=128.64 Aligned_cols=269 Identities=14% Similarity=0.117 Sum_probs=129.0
Q ss_pred cceeecccccCCCCCC-------CC--------------CChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHH
Q 010547 98 PGLIDVHAHLDDPGRT-------EW--------------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 156 (507)
Q Consensus 98 PGfID~H~H~~~~~~~-------~~--------------~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~ 156 (507)
|||||+|+|+...... .| .........++++||||+.|+. .....+......
T Consensus 1 PGlIdaH~Hl~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~G~Ttv~d~~-------~~~~~~~~~~~~ 73 (308)
T d2imra2 1 PPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIV-------WAPEVMDALLAR 73 (308)
T ss_dssp SCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEE-------CSHHHHHHHHTC
T ss_pred CCccchhhChhhhCccccCCCHHHHHHHHHhccccccHHHHHHHHHHHHHHcCCeEEEehh-------cCHHHHHHHHHH
Confidence 9999999999643110 00 0122345678999999999875 233333333322
Q ss_pred HhcCceeeEEEeccccCCCccc----HHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 010547 157 AEKRIYVDVGFWGGLVPENAYN----ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (507)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 232 (507)
...+.................. .+.++.+.+.....+...+.. ......+.+..+.....++..+.++..|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 150 (308)
T d2imra2 74 EDLSGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPGLRLGLSP---HTPFTVSHRLMRLLSDYAAGEGLPLQIHVA 150 (308)
T ss_dssp TTCCEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEE---CCSSSBCHHHHHHHHHHHHHHTCCBEEEES
T ss_pred hCcCeEEEeeecCCCCCCHHHHHHHHHHHHHHHhccCCCceEEeeec---ccccccchHHHHHHhhhccccCccceeeee
Confidence 2222222212111111111111 223334443332223322211 233457888999999999999999999986
Q ss_pred CcccchhhhhcccCcCCcc----cc------ccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHH
Q 010547 233 MEKGSERHVKLEDDTLDTR----SY------STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 302 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~ 302 (507)
................... .. ........... .++.+.+... . +.+..+.|.... ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~g~-l-------~~~~~~~h~~~~--~~ 217 (308)
T d2imra2 151 EHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDLT---PVRYLDELGV-L-------AARPTLVHMVNV--TP 217 (308)
T ss_dssp CSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTCC---HHHHHHHHTC-G-------GGCCEEEECCSC--CH
T ss_pred cccchhhhhhhhccchhhhhhhhhhHHHhhhhhhcccccCCC---HHHHHHHCCC-C-------CCCeeeeecccc--hh
Confidence 6543222221111000000 00 00000000000 1112222111 0 334556666542 23
Q ss_pred HHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccC
Q 010547 303 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 382 (507)
Q Consensus 303 ~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~ 382 (507)
+.+....+.|..+.. ||...... . .....+.++.+.|+++++|||+.+.+...+
T Consensus 218 ~~~~~~~~~g~~~~~--~p~~~~~~-----~--------------~~~~~~~~l~~aGv~valGTD~~~~~~~~~----- 271 (308)
T d2imra2 218 DDIARVARAGCAVVT--CPRSNHHL-----E--------------CGTFDWPAFAAAGVEVALGTDSVASGETLN----- 271 (308)
T ss_dssp HHHHHHHHHTCCEEE--CHHHHHHT-----T--------------CCCCCHHHHHHTTCCEEECCCCHHHHSCSC-----
T ss_pred hhhhhhhhcCCcccc--cccccccc-----c--------------cccchHHHHHHCCCcEEEECCCCCCCCchh-----
Confidence 344455555655433 44211110 0 001134577888999999999643211111
Q ss_pred CccccCCCCchhhhHHHHHHHH--HHhcCCCHHHHHHHHhhchhHHhCCC
Q 010547 383 NFLKAWGGISSLQFVLPVTWSY--GRKYGVTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 383 ~~~~~~~~~~~~~~~l~~~~~~--~~~~gls~~~al~~~T~n~A~~lgl~ 430 (507)
+...++. ....|+++.|+++++|.|||++||++
T Consensus 272 ---------------~~~e~~~a~~~~~g~tp~e~l~~aT~~gA~~LGl~ 306 (308)
T d2imra2 272 ---------------VREEVTFARQLYPGLDPRVLVRAAVKGGQRVVGGR 306 (308)
T ss_dssp ---------------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHC--
T ss_pred ---------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 1111222 23458999999999999999999984
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.41 E-value=7.9e-13 Score=122.70 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-C
Q 010547 353 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-V 430 (507)
Q Consensus 353 ~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lgl-~ 430 (507)
+.++.++|+++++|||..+..... .. +...++. +...|||++|||+++|.|||++||+ +
T Consensus 237 ~~~l~~aGv~v~lGTD~~~~~~~~--------------~~-----l~~~~~~~~~~~glt~~eal~~aT~~~A~~lG~~~ 297 (301)
T d2q09a2 237 VVALRKAGVPMAVSSDINPGTAPI--------------VS-----LRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQE 297 (301)
T ss_dssp HHHHHHTTCCEEECCCCBTTTBCC--------------CC-----HHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred HHHHHHCCCeEEEEeCCCCCCCCc--------------ch-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCccc
Confidence 467788899999999965432110 00 2233333 3467999999999999999999999 6
Q ss_pred CCCc
Q 010547 431 SKGA 434 (507)
Q Consensus 431 ~~G~ 434 (507)
++|+
T Consensus 298 ~iG~ 301 (301)
T d2q09a2 298 QLGQ 301 (301)
T ss_dssp TSSS
T ss_pred ccCc
Confidence 6774
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.39 E-value=1.8e-13 Score=109.89 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=55.3
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccC
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~ 108 (507)
+.++|+|++|+++++..++||+|+||+|++|++..+.+ ++++||++|++|+||+||.|+|+.
T Consensus 1 M~~likn~~v~~~~~~~~~Di~I~~g~I~~Ig~~~~~~----~~~vida~g~~v~P~~v~~~~~~~ 62 (128)
T d1k1da1 1 MTKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEEK----GAEVIDAKGCYVFPIVVGSDADLV 62 (128)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECSSBEEEEESSCCCS----SCCCEECTTCEEEECSTTSBCCEE
T ss_pred CCEEEECcEEECCCCCEEeeEEEECCEEEEEcCCCCCC----ceEEeeeCCCeEeeeecccccceE
Confidence 46899999999999988999999999999999987654 678999999999999997777763
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.39 E-value=1.8e-12 Score=120.96 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhC
Q 010547 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 350 ~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gls~~~al~~~T~n~A~~lg 428 (507)
...+.++.+.|+.+++|||....... +.. +...+... +..|+|+.|||+++|.|||++||
T Consensus 257 ~~~~~~~~~~Gv~v~~GtD~~~~~~~--------------~~~-----l~~el~~~~~~~Gls~~eaL~~aT~n~A~~lg 317 (324)
T d2p9ba2 257 VSGARQAHEAGLMIGVGTDTGMTFVP--------------QYA-----TWRELELLVAYAGFSPAEALHAATAVNASILG 317 (324)
T ss_dssp HHHHHHHHHTTCCBCCCCCTTSTTSC--------------TTC-----HHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcCh--------------hhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 34566788899999999996433211 000 22223344 45799999999999999999999
Q ss_pred C-CCCCc
Q 010547 429 Q-VSKGA 434 (507)
Q Consensus 429 l-~~~G~ 434 (507)
+ +++||
T Consensus 318 l~d~~GS 324 (324)
T d2p9ba2 318 VDAETGS 324 (324)
T ss_dssp CTTTSSS
T ss_pred CCcCcCc
Confidence 9 77886
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.38 E-value=4.2e-12 Score=117.79 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=47.9
Q ss_pred hHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 010547 349 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 349 ~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lg 428 (507)
....+.++.++|+++++|||+...+.... ...+....+.|+|+.|||+++|.|||++||
T Consensus 240 ~~~~~~~l~~aGv~v~lGTD~~~~~~~~~---------------------~~el~~~~~~Gls~~eaL~~aT~n~A~~lG 298 (303)
T d3be7a2 240 QRENFMNAHRRGAIITFGTDAGIFDHGDN---------------------AKQFAYMVEWGMTPLEAIQASTIKTATLFG 298 (303)
T ss_dssp HHHHHHHHHHHTCCEECCCCBTTBCTTCG---------------------GGHHHHHHHTTCCHHHHHHTTTHHHHHHHT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCcccHHH---------------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 34556778888999999999754322111 112334567899999999999999999999
Q ss_pred CCCCC
Q 010547 429 QVSKG 433 (507)
Q Consensus 429 l~~~G 433 (507)
++++|
T Consensus 299 l~D~G 303 (303)
T d3be7a2 299 IENIG 303 (303)
T ss_dssp CSSCS
T ss_pred CcccC
Confidence 98777
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.38 E-value=2.9e-12 Score=119.28 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 010547 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 350 ~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl 429 (507)
...+.++.+.|+++++|||....+... +...+..+.+.|+|++|||+++|.|||++||+
T Consensus 247 ~~~~~~l~~~Gv~v~lGTD~~~~~~~~---------------------~~~el~~~~~~Gls~~eaL~~aT~~~A~~LGl 305 (310)
T d2qs8a2 247 SDTFRKAYEKGVKIAFGTDAGVQKHGT---------------------NWKEFVYMVENGMPAMKAIQSATMETAKLLRI 305 (310)
T ss_dssp HHHHHHHHHHTCCBCCCCCBTTBCTTC---------------------TTHHHHHHHHTTCCHHHHHHHTTHHHHHHTTC
T ss_pred hHHHHHHHHCCCeEEEecCCCCCCccH---------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCc
Confidence 355678888999999999975432211 11223455688999999999999999999999
Q ss_pred -CCCC
Q 010547 430 -VSKG 433 (507)
Q Consensus 430 -~~~G 433 (507)
+++|
T Consensus 306 ~d~iG 310 (310)
T d2qs8a2 306 EDKLG 310 (310)
T ss_dssp TTTSS
T ss_pred CCCcC
Confidence 6666
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.32 E-value=2.2e-11 Score=113.38 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHH
Q 010547 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 426 (507)
Q Consensus 347 ~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~ 426 (507)
......+.++.++|+++++|||........ +...+.... .|+|+.|+|+++|.|||++
T Consensus 246 ~~~~~~~~~l~~aGv~v~~GTD~~~~~~~~---------------------~~~el~~~~-~gls~~eaL~~ATi~~A~a 303 (311)
T d2r8ca2 246 GAGLHSIEIMKRAGVKMGFGTDLLGEAQRL---------------------QSDEFRILA-EVLSPAEVIASATIVSAEV 303 (311)
T ss_dssp GGHHHHHHHHHHTTCEECCCCCCCGGGGGG---------------------TTHHHHHHT-TTSCHHHHHHHTTHHHHHH
T ss_pred HhhhHHHHHHHHCCCeEEEEeCCCCCchHH---------------------HHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 345567788899999999999965332111 111122222 3999999999999999999
Q ss_pred hCC-CCCC
Q 010547 427 AGQ-VSKG 433 (507)
Q Consensus 427 lgl-~~~G 433 (507)
||+ +++|
T Consensus 304 Lg~~d~iG 311 (311)
T d2r8ca2 304 LGMQDKLG 311 (311)
T ss_dssp TTCTTTSS
T ss_pred HCCCcCCC
Confidence 999 6666
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.31 E-value=1e-12 Score=104.92 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=59.3
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecce---eecccccCCCC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL---IDVHAHLDDPG 111 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGf---ID~H~H~~~~~ 111 (507)
|.+++|+||+|+++++...+||+|+||||++|+++.... ++.++||++|++|+||+ .|+|.|+.++.
T Consensus 1 M~dllIkn~~iv~~~~~~~~Di~I~dgkI~~i~~~~~~~---~a~~~iDa~g~~v~P~~~vG~DAD~~l~Dp~ 70 (126)
T d1gkra1 1 MFDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDV---EASRTIDAGGKFVMPTLQVGSDADLLILDLD 70 (126)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTC---CEEEEEECTTCEEEESCCTTSBCCEEEEESC
T ss_pred CccEEEECcEEECCCCCEEEeEEEECCEEEEEcCcCCcc---cceEEeehhhcccccceeecccchhheeccc
Confidence 568999999999999888999999999999999876544 25689999999999998 99999998653
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.30 E-value=1.3e-12 Score=98.83 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=52.4
Q ss_pred eEEEEecEEECCCC---ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeeccccc
Q 010547 44 QYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107 (507)
Q Consensus 44 ~~~i~n~~i~~~~~---~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~ 107 (507)
.++|+|++|+|+.+ ..+.+|+|+||+|++|++....+ ++++++||++|++|+|||+|.|.|.
T Consensus 2 ktlI~~g~liDg~~~~~~~~~~I~I~~~~I~~V~~~~~~~--~~~~~vID~~G~~v~PGL~~g~~~d 66 (96)
T d2qs8a1 2 KTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISS--NDFEDYIDLRDHTVLPSIESGKLAD 66 (96)
T ss_dssp CEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESCCCC--TTSSEEEEEEEEEEEESCCTTSBCC
T ss_pred eEEEECeEEEECCCCccccCceEEEECCEEEEEcccccCC--CCCCEEEECCCCEeccCccccCccc
Confidence 47999999999854 35789999999999999864332 1378999999999999999999993
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.29 E-value=2.3e-12 Score=116.91 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 010547 398 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 433 (507)
Q Consensus 398 l~~~~~~~~~~gls~~~al~~~T~n~A~~lgl~~~G 433 (507)
+...++.+.+.|+|++||++++|.|||++||++++|
T Consensus 232 l~~~l~~~~~~Gls~~eal~~aT~npA~~lgl~drG 267 (267)
T d2icsa2 232 LATTMEKLRVVGYDWPEIIEKVTKAPAENFHLTQKG 267 (267)
T ss_dssp HHHHHHHHHHHTCCHHHHHHTTTHHHHHHTTCTTSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 444555667789999999999999999999997777
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.28 E-value=1.5e-12 Score=103.10 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=54.6
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccCC
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~~ 109 (507)
++|+||+|+++++..++||+|+||+|++|+++...+ +++++||++|++|+||..++|.|...
T Consensus 2 llIkng~iv~~~~~~~~Di~I~~gkI~~Ig~~l~~~---~~~~viDa~G~~v~~g~d~~~~d~~~ 63 (123)
T d1gkpa1 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAP---PGTEVIDATGKYVFPGADLVVYDPQY 63 (123)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCC---TTCEEEECTTSEEEECCCEEEEETTC
T ss_pred EEEECcEEECCCCCEEeeEEEECCEEEEeecCCCCC---cchhhhhhccceEecCcceEEEeccc
Confidence 689999999999989999999999999999987655 26899999999999999777776543
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.25 E-value=4.5e-11 Score=112.84 Aligned_cols=30 Identities=7% Similarity=-0.279 Sum_probs=27.1
Q ss_pred HHhcCCCHHHHHHHHhhchhHHhCC-CCCCc
Q 010547 405 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGA 434 (507)
Q Consensus 405 ~~~~gls~~~al~~~T~n~A~~lgl-~~~G~ 434 (507)
..+.++|+.|+++++|.|||++||+ +++||
T Consensus 295 ~~~~gl~~~eal~~AT~ngA~aLG~~d~iGS 325 (325)
T d2ooda2 295 AERNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325 (325)
T ss_dssp HHHTCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred cccCCCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence 3567899999999999999999999 87886
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.25 E-value=9.3e-12 Score=83.53 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=46.3
Q ss_pred cceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEec
Q 010547 42 YNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMP 98 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~P 98 (507)
+.+++|+||+|+|+.+ ...++|+|+||||++|++....+ +.++||++|++|+|
T Consensus 1 P~DllIkn~~i~d~~~~~~~~~di~I~~g~I~~Ig~~~~~~----~~~vIDa~G~~v~P 55 (55)
T d1m7ja1 1 PFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASS----ARRRIDVAGKVVSP 55 (55)
T ss_dssp CBSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTTSC----BSCEEECTTCEEEE
T ss_pred CCcEEEECCEEECCCCCceeEEEEEEECCEEEEEccCCCCC----CCEEEECCCCEECC
Confidence 3579999999999876 56899999999999999865543 68999999999998
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.24 E-value=6.8e-12 Score=85.71 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=46.9
Q ss_pred ccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCCCCcccc
Q 010547 434 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505 (507)
Q Consensus 434 ~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~~~~~~~ 505 (507)
+|++|++|||+|||++...+ +..+..+ ......|..|||||++++++|+++++.+|++||
T Consensus 1 ri~~G~~ADlvvfDp~~i~d-----~~~~~~~-------~~~~~Gi~~v~VnG~~v~~~g~~~~~~~G~~lr 60 (61)
T d1m7ja2 1 QVQPGYYADLVVFDPATVAD-----SATFEHP-------TERAAGIHSVYVNGAAVWEDQSFTGQHAGRVLN 60 (61)
T ss_dssp SCCTTSBCCEEEECTTTCBC-----CCCSSST-------TCCCBSEEEEEETTEEEEETTEECSCCCCCBCC
T ss_pred CCCCCcCCCEEEECHHHccC-----ccccccc-------ccccceeEEEEECCEEEEECCEECCCCCCEEee
Confidence 48999999999999886332 1112222 233346999999999999999999999999997
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=7.4e-12 Score=101.42 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=75.9
Q ss_pred hchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC
Q 010547 421 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 499 (507)
Q Consensus 421 ~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~ 499 (507)
.++|+.+.. ...+.+.+|.+|||+++|++..|.+... .++++.. ++||++..+.|.|..||++|++||++|+++...
T Consensus 38 ~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~-~~~sk~~-~tpf~G~~~~G~v~~Ti~rG~~v~~~g~~~~~~ 115 (142)
T d1kcxa1 38 PGGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAK-SHKSTVE-YNIFEGMECHGSPLVVISQGKIVFEDGNISVSK 115 (142)
T ss_dssp CSSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTT-TCSSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCT
T ss_pred CccceeechhhcceeecccccceEEEEeccceEEEcch-hccccCC-ccCCcCCEEEEEEEEEEECCEEEEECCEEeEcC
Confidence 367888888 6779999999999999999999999988 8999999 999999999999999999999999999997554
Q ss_pred -CCcccc
Q 010547 500 -CGSPIL 505 (507)
Q Consensus 500 -~~~~~~ 505 (507)
.|+|+.
T Consensus 116 g~G~fl~ 122 (142)
T d1kcxa1 116 GMGRFIP 122 (142)
T ss_dssp TCCCBCC
T ss_pred CCCeEec
Confidence 799984
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.16 E-value=1.7e-11 Score=100.15 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=76.1
Q ss_pred hchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC-C
Q 010547 421 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP-A 498 (507)
Q Consensus 421 ~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~-~ 498 (507)
.++|+.++. .+.+.|.+|.+||++++|++..|.+... .++++.. ++||+|..+.|.|..||++|++||++|+++. .
T Consensus 39 ~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~-~~~sk~~-~spfeG~~~~G~v~~TivrG~iV~~~g~~~~~~ 116 (150)
T d2ftwa1 39 KEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKD-THHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVK 116 (150)
T ss_dssp CSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTT-TCCCSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCT
T ss_pred CCccEEEecccceeeeecCccCceEEEecCceEEEecc-ccccccc-cccCcCCEEEEEEeEEEECCEEEEECCEEeecC
Confidence 468999998 7779999999999999999999999888 8999999 9999999999999999999999999999975 4
Q ss_pred CCCcccc
Q 010547 499 ACGSPIL 505 (507)
Q Consensus 499 ~~~~~~~ 505 (507)
..|+|+.
T Consensus 117 g~Grfl~ 123 (150)
T d2ftwa1 117 GSGRFVP 123 (150)
T ss_dssp TCCCBCC
T ss_pred CCceEcc
Confidence 4899984
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.14 E-value=7.1e-11 Score=106.49 Aligned_cols=253 Identities=21% Similarity=0.300 Sum_probs=151.2
Q ss_pred eecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCC--------HHHHHHHHHHHhcCceeeEEEecccc
Q 010547 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS--------TETLKLKVDAAEKRIYVDVGFWGGLV 172 (507)
Q Consensus 101 ID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (507)
||+|+|+..+ +....+|..|+||++.. ++.|.... .-.+...+++.+ ..++++.+.+
T Consensus 2 iDtHvHfi~P---------qq~~~al~sGiTT~iGg--GtGPa~Gt~att~tpg~~~~~~ml~a~d-~~P~N~g~~g--- 66 (385)
T d1ejxc2 2 IDTHIHWICP---------QQAEEALVSGVTTMVGG--GTGPAAGTHATTCTPGPWYISRMLQAAD-SLPVNIGLLG--- 66 (385)
T ss_dssp EEEEEECSCT---------THHHHHHHTTEEEEEEE--CCSSSHHHHHSSCCCHHHHHHHHHHHHT-TSSSEEEEEE---
T ss_pred ccccccccCH---------HHHHHHHhcCCeeeecC--ccCCCCCCCCcCcCCCHHHHHHHHHhhh-hCCcceeeee---
Confidence 8999998874 34678899999999976 44453211 335555555444 5678888754
Q ss_pred CCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 173 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
..+....+.+.+.+++|+.|+|. ++.+..++..+...+..|++++++|.+|.+...+
T Consensus 67 kGn~s~~~~l~eqi~AGa~GlKi-------HEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE---------------- 123 (385)
T d1ejxc2 67 KGNVSQPDALREQVAAGVIGLKI-------HEDWGATPAAIDCALTVADEMDIQVALHSDTLNE---------------- 123 (385)
T ss_dssp ECCCSSHHHHHHHHHHTCSEEEE-------EGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCS----------------
T ss_pred ccccCChHHHHHHHHhhhceecC-------CcccccChHHHHHHHHhHhhcCceEEEecccccc----------------
Confidence 33444567788999999999999 5566889999999999999999999999865432
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH---HHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS---SLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~---~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
...++..+..++ |..+|..|...+ . ..+.++.+...++.. ..+.| -..++.+
T Consensus 124 -------------~gfvedT~~a~~---------gRtiH~~H~EGa-GGGHAPDii~~~~~~nvlp-sSTnP-T~P~t~n 178 (385)
T d1ejxc2 124 -------------SGFVEDTLAAIG---------GRTIHTFHTEGA-GGGHAPDIITACAHPNILP-SSTNP-TLPYTLN 178 (385)
T ss_dssp -------------SCCHHHHHHHHT---------TCCEEESSTTST-TSSSTTTGGGGGGCTTEEE-EEEST-TSSCBTT
T ss_pred -------------cccchhhHHHhC---------CCceeeeecccC-CCCccchhhHhhccCcccC-CCCCC-CCCCccC
Confidence 112467777766 888999999753 1 133444433333221 12222 1222222
Q ss_pred CCCCC----CCceeEcCCCCC---------hhhHHHHHHHH-hcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhh
Q 010547 330 EIPDG----DTRFKCAPPIRD---------AANKEKLWEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 395 (507)
Q Consensus 330 ~~~~~----~~~~~~~p~~~~---------~~~~~~~~~~l-~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (507)
.+... -.....+|.+.. +...-..-..| ..|.+..++||..+ ++.+.
T Consensus 179 t~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sSDsQa-------------------MGRvG 239 (385)
T d1ejxc2 179 TIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQA-------------------MGRVG 239 (385)
T ss_dssp HHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEECCTTS-------------------SSCTT
T ss_pred chHhhCCceeecccCCCCChhHHhhhhccccchhhhhHHHhhccCceeeecccccc-------------------cCcCC
Confidence 21110 111112222211 00011111222 24999999999653 22223
Q ss_pred hHHHHHHHHHHh----cC-----------CCHHHHHHHHhhchhHHhCC-CCCCcc
Q 010547 396 FVLPVTWSYGRK----YG-----------VTLEQLASWWSERPAKLAGQ-VSKGAI 435 (507)
Q Consensus 396 ~~l~~~~~~~~~----~g-----------ls~~~al~~~T~n~A~~lgl-~~~G~I 435 (507)
+.....|..+.+ .| .....-+...|.|||.+-|+ +.+|..
T Consensus 240 Evi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMF 295 (385)
T d1ejxc2 240 EVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMF 295 (385)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCG
T ss_pred cchhhhHHHHHHHHHhhccCCCCCCCCcchHHHhhhhhhccChHHHcCccceeccc
Confidence 334444444322 12 34457788999999999999 777754
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=4.4e-14 Score=111.09 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=67.0
Q ss_pred CCHHHHHHHHhhchhHHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEE--eeEEEEEEECCE
Q 010547 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISRGN 487 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~V~~v~v~G~ 487 (507)
.+.+.++.++|..+|..+|+.+.|+|++|+.|||+++|.+.++..+. .+|+..+.+ .+.|.+|||+|+
T Consensus 26 ~t~~~~~~~~t~~~a~~~G~~~~GrIe~G~~ADivviDl~~p~~~p~----------~dp~~~lV~~~~~~V~~V~V~Gk 95 (123)
T d1p1ma1 26 GTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPV----------QNIKNHLVHAFSGEVFATMVAGK 95 (123)
T ss_dssp TEEEEEEESSCCCSEECTTEEEEESCCTTSBCCEEEEECCSGGGCSG----------GGHHHHHHHTCCSCCSEEEETTE
T ss_pred ccHHHHHhhhhccChhhcCCccccccCCCCCcCEEEEeCCCCcccch----------hhhHHHHHhccCCCccEEEECCE
Confidence 46778999999999999999889999999999999999998664432 333333322 357999999999
Q ss_pred EEEecCcccCCCCCcc
Q 010547 488 LVYKEGNHAPAACGSP 503 (507)
Q Consensus 488 ~v~~~g~~~~~~~~~~ 503 (507)
+||+||+++..+....
T Consensus 96 ~Vv~dG~~~~iD~~ei 111 (123)
T d1p1ma1 96 WIYFDGEYPTIDSEEV 111 (123)
T ss_dssp EEEETTBCTTSCHHHH
T ss_pred EEEECCeEcccCHHHH
Confidence 9999999987665443
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.13 E-value=6.9e-13 Score=104.33 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=55.4
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEE
Q 010547 410 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 488 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~ 488 (507)
+++.++++++|.+||+++++ +++|+|++|+.|||++||.+++..+ ++.... ..|..||++|++
T Consensus 46 l~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~ad~~~~~~~~~~~~----~y~~~~------------~~v~~vi~~G~i 109 (113)
T d2bb0a1 46 VFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSADLVIWQAPNYMYI----PYHYGV------------NHVHQVMKNGTI 109 (113)
T ss_dssp EEEEETTTTTTCEEEEEEECTTCEEECSTTSBCCEEEESSSSTTHH----HHSCSS------------CCEEEEEETTEE
T ss_pred cCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcccEEEecCCchhhc----hhhcCC------------CChhEEEECCEE
Confidence 77789999999999999999 7889999999999999998875443 111122 269999999999
Q ss_pred EEec
Q 010547 489 VYKE 492 (507)
Q Consensus 489 v~~~ 492 (507)
||+.
T Consensus 110 v~~r 113 (113)
T d2bb0a1 110 VVNR 113 (113)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9963
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.12 E-value=1.8e-11 Score=95.34 Aligned_cols=72 Identities=26% Similarity=0.481 Sum_probs=64.5
Q ss_pred HhhchhHHhCC---CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 419 WSERPAKLAGQ---VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 419 ~T~n~A~~lgl---~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
.+.++|+.+.. ...|.|++|+.|||+++|++..|.+... .+.++.. ++||.+..+.|.|..||++|++||+|
T Consensus 38 i~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~-~~~Sk~~-nspf~g~~l~G~v~~T~~~G~~v~~d 112 (112)
T d1xrta1 38 ILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEE-TNLSKSR-NTPLWGKVLKGKVIYTIKDGKMVYKD 112 (112)
T ss_dssp CCCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTT-TCCSSCC-CCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred CCcccceEEehhcccccceeecccceEEEEecCCccEEECHH-HccCcCC-CceecCCEEeeEEEEEEECCEEEEeC
Confidence 35678887744 3358999999999999999999999988 8999999 99999999999999999999999986
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=4.9e-11 Score=96.47 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=57.7
Q ss_pred eEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecce-eecccccCCC
Q 010547 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL-IDVHAHLDDP 110 (507)
Q Consensus 44 ~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGf-ID~H~H~~~~ 110 (507)
.++|+||+|++++....+||+|+||+|.+|+++...+. ++++||+.|++++||. +|+|.|+.++
T Consensus 2 k~lIkng~iv~~~~~~~~DilIedG~I~~Ig~~l~~~~---~a~vIDa~G~~v~~~~G~dAdl~i~Dp 66 (142)
T d1kcxa1 2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPG---GVKTIEANGRMVIIAVGSDADVVIWDP 66 (142)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCCSCS---SCEEEECTTCEEECCTTSBCCEEEEEE
T ss_pred cEEEECCEEECCCCcEEeeEEEECCEEeEEeccCCCCc---cceeechhhcceeecccccceEEEEec
Confidence 57999999999988889999999999999998776553 6899999999999997 9999999764
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.09 E-value=8.4e-12 Score=101.04 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=64.0
Q ss_pred CHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEe---eEEEEEEECC
Q 010547 411 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRG 486 (507)
Q Consensus 411 s~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~v~v~G 486 (507)
+.+++..++|.++|+++|+ +..|+|++||.|||+++|.+.++..+ . ++|+.++.+. ..|.+|||+|
T Consensus 36 ~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~~ADli~~d~~~p~~~p---------~-~dp~~~lV~~~~~~~V~~v~V~G 105 (139)
T d2paja1 36 TIDAIGALAPRPGETIVDATDCVIYVAVGYAADIAVYRLDDPRYFG---------L-HDPAIGPVASGGRPSVMALFSAG 105 (139)
T ss_dssp EEEEESSCCCCTTCEEEECBTCEEECSTTSBCCEEEEECCSGGGTT---------C-SSGGGHHHHSCSCCEEEEEEETT
T ss_pred cHHHHHhhhhhccchhcCCCCccceeccCCcccEEEEcCCCcccCC---------C-CCHHHHHHHhhCcCcceeEEEcC
Confidence 3445666899999999999 66899999999999999998765432 2 4444444443 4699999999
Q ss_pred EEEEecCcccCCCCCc
Q 010547 487 NLVYKEGNHAPAACGS 502 (507)
Q Consensus 487 ~~v~~~g~~~~~~~~~ 502 (507)
+++++||+++..+..+
T Consensus 106 ~~vv~dg~l~~iD~~~ 121 (139)
T d2paja1 106 KRVVVDDLIEGVDIKE 121 (139)
T ss_dssp EEEEETTBCTTCCHHH
T ss_pred EEEEECCEeccCCHHH
Confidence 9999999998765443
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.05 E-value=2e-10 Score=91.33 Aligned_cols=70 Identities=21% Similarity=0.410 Sum_probs=65.1
Q ss_pred ccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC-CCCCcccc
Q 010547 434 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP-AACGSPIL 505 (507)
Q Consensus 434 ~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~-~~~~~~~~ 505 (507)
.|++|.+|||+++|++..|.+... .++++.. ++||.|..+.|.|..||++|++||++|++.. ...|+|++
T Consensus 55 ~~~vG~DAD~~l~Dp~~~~~v~~~-~~~sk~~-~tpf~G~~~~G~v~~Ti~rG~~v~~~ge~~~~~g~G~~i~ 125 (126)
T d1gkra1 55 TLQVGSDADLLILDLDIDTKVDAS-QFRSLHK-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVT 125 (126)
T ss_dssp SCCTTSBCCEEEEESCCCEECCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCC
T ss_pred ceeecccchhheeccccceeccHH-HHHhhhc-ccccCCcEEEeEEEEEEECCEEEEECCEEEecCCCCeEcc
Confidence 499999999999999999999888 8999999 9999999999999999999999999999975 45799985
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.03 E-value=1.8e-10 Score=93.87 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=57.1
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecc-eeecccccCCC
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPG-LIDVHAHLDDP 110 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PG-fID~H~H~~~~ 110 (507)
.+++|+||+|++.+....+||+|+||+|.+|+++...+. ++++||+.|++++|+ .+|+|.|+.++
T Consensus 2 ~~iLIkng~iv~~~~~~~~DIlI~~G~I~~I~~~i~~~~---~~~iida~gk~v~i~~G~dad~~i~dp 67 (150)
T d2ftwa1 2 GTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKE---GIKVVDATDKLLLIDVGCDGDIVIWDP 67 (150)
T ss_dssp CCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCS---SCCEEECTTCEEECSTTSBCCEEEEEE
T ss_pred CCEEEECCEEECCCCcEEeeEEEECCEEEEEeccCCCCC---ccEEEecccceeeeecCccCceEEEec
Confidence 578999999999988889999999999999998876553 689999999988555 69999999764
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.3e-09 Score=100.26 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=39.6
Q ss_pred HhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHH-HHHHhcCCCHHHHHHHHhhchhHHhCC-CCCC
Q 010547 357 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYGVTLEQLASWWSERPAKLAGQ-VSKG 433 (507)
Q Consensus 357 l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~gls~~~al~~~T~n~A~~lgl-~~~G 433 (507)
+.+|+.+.++||..+.... .+...+ ..++..|||++||++++|.||||+||+ +++|
T Consensus 240 ~~~g~~~~~gtd~~~g~~~---------------------~l~~~~~~~v~~~gls~~~al~~aT~n~A~~LGldd~iG 297 (297)
T d1yrra2 240 YYRNGLCVDENGTLSGSSL---------------------TMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLG 297 (297)
T ss_dssp EECSSCEECTTCCEEEBCC---------------------CHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred EEeCCEEEecCCCCccchh---------------------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCcCcC
Confidence 4568888999996432110 022223 334557999999999999999999999 6665
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=2.4e-09 Score=98.71 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=36.9
Q ss_pred ceeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCC
Q 010547 99 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS 143 (507)
Q Consensus 99 GfID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~ 143 (507)
||||+|+|+..+.....+++....+.++++||||+++++ ++.|.
T Consensus 1 GlID~HvH~~~~~~~~~~~~~~~~~~~l~~GvTTv~~~~-~t~~~ 44 (288)
T d1o12a2 1 GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLATT-VSTSL 44 (288)
T ss_dssp CEEEEEECEETTEETTTTCHHHHHHHHHTTTEEEEEEEC-CSCCH
T ss_pred CeEEecccCCCCCccccccHHHHHHHHHhCCeEEEcCCC-CCCCH
Confidence 899999999887666677788889999999999999876 55544
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=98.88 E-value=1.5e-11 Score=90.63 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=49.2
Q ss_pred HHHHHHhhchhHHhCC-CC--CCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEE
Q 010547 414 QLASWWSERPAKLAGQ-VS--KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490 (507)
Q Consensus 414 ~al~~~T~n~A~~lgl-~~--~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~ 490 (507)
++++.+|.|+|+++|+ ++ .|+|++||.|||++++.|+..++. ...+|..||++|+++.
T Consensus 32 ~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgnPL~dI~-------------------~l~~i~~Vik~G~v~k 92 (95)
T d3be7a1 32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIENPLANIR-------------------TLEEVAFVMKEGKVYK 92 (95)
T ss_dssp EEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSCTTTCGG-------------------GTTSCCEEEETTEEEE
T ss_pred HHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCCchhhhH-------------------HhcCCCEEEECCEEEc
Confidence 5688899999999999 54 499999999999999988654332 1125889999999877
Q ss_pred ecC
Q 010547 491 KEG 493 (507)
Q Consensus 491 ~~g 493 (507)
++|
T Consensus 93 ~e~ 95 (95)
T d3be7a1 93 REG 95 (95)
T ss_dssp ECC
T ss_pred CCC
Confidence 765
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=3e-08 Score=91.92 Aligned_cols=151 Identities=16% Similarity=0.137 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceE
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 290 (507)
+.+++.++.|+++++++.+|+..... . .+.+..+.+.. ......
T Consensus 138 ~~f~~~~~~A~~~~lPv~iH~r~~~~----------------------------~----~e~~~~l~~~~----~~~~~~ 181 (291)
T d1bf6a_ 138 KVFIAAALAHNQTGRPISTHTSFSTM----------------------------G----LEQLALLQAHG----VDLSRV 181 (291)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCS----------------------------H----HHHHHHHHHTT----CCGGGE
T ss_pred HHHHHHHHHHHHhCCCeEEeccchhh----------------------------h----HHHHHHHHHhC----CCcccc
Confidence 46888899999999999999854221 0 12222222221 113456
Q ss_pred EEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCC--eeEEeCC
Q 010547 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSD 368 (507)
Q Consensus 291 ~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~--~~~lgtD 368 (507)
.+.|+.-. .+.+.++.+.+.|..+.+..... +...| .......+.++++.+- .+.++||
T Consensus 182 ~~~H~~f~-~~~e~~~~~~~~G~~i~~~g~~~---------------~~~~~---~~~~~~~~~~lv~~~p~drilleTD 242 (291)
T d1bf6a_ 182 TVGHCDLK-DNLDNILKMIDLGAYVQFDTIGK---------------NSYYP---DEKRIAMLHALRDRGLLNRVMLSMD 242 (291)
T ss_dssp EECCCCSS-CCHHHHHHHHHTTCEEEECCTTC---------------TTTSC---HHHHHHHHHHHHHTTCGGGEEECCC
T ss_pred eecccCCC-CCHHHHHHHHhcCeeEEeccccc---------------ccCCc---HHHhHHHHHHHHHhCCchhEEEecC
Confidence 77898433 67889999999998777643221 00011 2333455667777663 5789999
Q ss_pred CCCCChhhhccccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 010547 369 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 427 (507)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gls~~~al~~~T~n~A~~l 427 (507)
..-..+... . |-.+....+........+.|+|.+++-++.+.||+|++
T Consensus 243 ~p~~~p~~~-~----------g~~~~~~~~~~~~~~l~~~g~s~e~i~~i~~~Np~rlf 290 (291)
T d1bf6a_ 243 ITRRSHLKA-N----------GGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFF 290 (291)
T ss_dssp CCSGGGSGG-G----------TSCCTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHC
T ss_pred CCCcccccc-C----------CCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 653222111 0 11223333444455556689999999999999999987
|
| >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Bacillus pasteurii [TaxId: 1474]
Probab=98.80 E-value=1.1e-08 Score=82.41 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=69.5
Q ss_pred CcceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCC---------CCCcEEecCCCEEecceeecccccCCCC
Q 010547 41 PYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNS---------KTGQVVDYGEAVIMPGLIDVHAHLDDPG 111 (507)
Q Consensus 41 ~~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~---------~~~~viD~~g~~v~PGfID~H~H~~~~~ 111 (507)
...+++|.|+.|++..++.++||-|+||||+.||+...+.-.. .++++|.++|++++||-||.|.|+...+
T Consensus 65 ~~~d~vitn~~i~d~~Gi~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHFp~qp 144 (180)
T d4ubpc1 65 NVLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFFGVKA 144 (180)
T ss_dssp TBCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGTTTSC
T ss_pred CcceEEEeeEEEecCCCeEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhcCCCH
Confidence 4578999999999999999999999999999999876543221 3678999999999999999999973321
Q ss_pred CCCCCChhHHHHHHHhCCceEEEeCC
Q 010547 112 RTEWEGFPSGTKAAAAGGITTLIDMP 137 (507)
Q Consensus 112 ~~~~~~~~~~~~~~l~~GvTt~~~~~ 137 (507)
..+++.|+|+.-.+.
T Consensus 145 -----------e~aLksG~tt~Gp~g 159 (180)
T d4ubpc1 145 -----------DRVIKGGIIAYAQIG 159 (180)
T ss_dssp -----------SEEEETTEEEEEEEC
T ss_pred -----------HHHHhcCceeEccCC
Confidence 234678999986654
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=5e-07 Score=82.01 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=136.3
Q ss_pred eeecccccCCCCCC-CCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCC---C
Q 010547 100 LIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---N 175 (507)
Q Consensus 100 fID~H~H~~~~~~~-~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 175 (507)
|||+|+|+...... ..+++......+...||..++..+ ...+......+.......+. ...|+.+. .
T Consensus 3 lIDtH~Hld~~~~e~~~~d~~~vi~~a~~~gv~~ii~~~-------~~~~~~~~~~~l~~~~~~i~--~~~GiHP~~~~~ 73 (265)
T d1yixa1 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVA-------TTLPSYLHMRDLVGERDNVV--FSCGVHPLNQND 73 (265)
T ss_dssp EEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECC-------SSHHHHHHHHHHHCSCTTEE--EEECCCTTCCSS
T ss_pred EEEecccCCccccchhhcCHHHHHHHHHHcCCCEEEEee-------CCHHHHHHHHHHHHhccccc--cccccccccccc
Confidence 79999999754322 234577778889999999988553 23455555555444332222 22233332 2
Q ss_pred cccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCC-C----HHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCC
Q 010547 176 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMT-N----ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 249 (507)
Q Consensus 176 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~----~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~ 249 (507)
....+.+..+.. ..+.+++.. +. +..+.. + .+.+.+.++.|.++++|+.+|+....
T Consensus 74 ~~~~e~l~~~~~~~~vvaIGEi-GL---D~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~a~-------------- 135 (265)
T d1yixa1 74 PYDVEDLRRLAAEEGVVALGET-GL---DYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDAR-------------- 135 (265)
T ss_dssp CCCHHHHHHHHTSTTEEEEEEE-EE---ECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--------------
T ss_pred ccchHHHHHHhccCCceeeecc-cc---cccccccchHHHHHHHHHHHHHHHHhCCCcccchhhHH--------------
Confidence 234566666654 333344331 00 111111 1 23477788999999999999995432
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEeccccccccccc
Q 010547 250 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 329 (507)
Q Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~ 329 (507)
.+++++.++... ...-.+.|+.+ ++.+.++.+.+.|.-+++..... ..
T Consensus 136 --------------------~~~~~il~~~~~-----~~~~~v~H~Fs--G~~~~a~~~l~~g~~~s~~g~~~---~~-- 183 (265)
T d1yixa1 136 --------------------ADTLAILREEKV-----TDCGGVLHCFT--EDRETAGKLLDLGFYISFSGIVT---FR-- 183 (265)
T ss_dssp --------------------HHHHHHHHHTTG-----GGTCEEETTCC--SCHHHHHHHHTTTCEEEECGGGG---ST--
T ss_pred --------------------HHHHHHHHhhcc-----cCcceEEEeec--CChHHHHHHHHcCCeecCccccc---cc--
Confidence 234444443210 11134778887 67788888888887666532110 00
Q ss_pred CCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhc
Q 010547 330 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKY 408 (507)
Q Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 408 (507)
.......+.+.+.-. .+.+-||++-..+. ...+ . ..-...+...... +.-.
T Consensus 184 ----------------~~~~l~~~v~~iPld-rlLlETD~P~~~p~-~~~~--~--------~n~P~~i~~~~~~iA~i~ 235 (265)
T d1yixa1 184 ----------------NAEQLRDAARYVPLD-RLLVETDSPYLAPV-PHRG--K--------ENQPAMVRDVAEYMAVLK 235 (265)
T ss_dssp ----------------TCHHHHHHHHHSCGG-GEEECCCBTSCCCT-TCTT--S--------CCCGGGHHHHHHHHHHHH
T ss_pred ----------------hhHHHHHHHHhcchh-ceEeecCCcccCcc-ccCC--C--------CCCcHHHHHHHHHHHHHH
Confidence 111111222222212 45799995422211 0000 0 0001113333333 4456
Q ss_pred CCCHHHHHHHHhhchhHHhCC--CCCCcc
Q 010547 409 GVTLEQLASWWSERPAKLAGQ--VSKGAI 435 (507)
Q Consensus 409 gls~~~al~~~T~n~A~~lgl--~~~G~I 435 (507)
+++.+++.+..+.|.-+++|+ ++.++|
T Consensus 236 ~~~~~ev~~~~~~Na~~lf~l~~~~~~~~ 264 (265)
T d1yixa1 236 GVAVEELAQVTTDNFARLFHIDASRLQSI 264 (265)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGGCCC
T ss_pred CcCHHHHHHHHHHHHHHHhCCCHHHhccc
Confidence 899999999999999999999 555655
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.67 E-value=3.2e-10 Score=87.41 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=48.6
Q ss_pred HhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEee---EEEEEEECCEEEE
Q 010547 419 WSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG---KVLATISRGNLVY 490 (507)
Q Consensus 419 ~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~~v~v~G~~v~ 490 (507)
+|.++|+++++ +++|.|++||.||++++|.+.++..+ ... .+++..+...| .|..|||+|+.||
T Consensus 42 at~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~-------~~~-~d~L~~li~~gd~r~V~~V~V~G~~VY 109 (109)
T d2i9ua1 42 DKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPED-------YDL-TERLERFIYLGDDRNIMKRYVCGNEIF 109 (109)
T ss_dssp GGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGG-------SCH-HHHHHHHHHHCCGGGEEEEEETTEEEC
T ss_pred HHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhh-------hhh-hhHHHHheeeCCCCceeEEEECCEECC
Confidence 68999999999 88999999999999999977543221 111 34444444433 4999999999997
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Probab=98.62 E-value=6.4e-08 Score=77.93 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=60.6
Q ss_pred cceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCC---------CCCcEEecCCCEEecce----eecccccC
Q 010547 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNS---------KTGQVVDYGEAVIMPGL----IDVHAHLD 108 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~---------~~~~viD~~g~~v~PGf----ID~H~H~~ 108 (507)
.-+++|.|+.|+|..++.++||-|+||||+.||+...+.-.. .++++|.++|++++||= ||.|.|+.
T Consensus 65 ~~D~vitna~iid~~Gi~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~h~hgI 144 (180)
T d1e9yb1 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSPAFFGV 144 (180)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECTTTTTT
T ss_pred ccceEEEeeEEeccCCeEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEchhhcCC
Confidence 479999999999999999999999999999999876543221 35789999999999996 99999988
Q ss_pred CCCC
Q 010547 109 DPGR 112 (507)
Q Consensus 109 ~~~~ 112 (507)
.+.+
T Consensus 145 kPq~ 148 (180)
T d1e9yb1 145 KPNM 148 (180)
T ss_dssp CCSE
T ss_pred CHHH
Confidence 7644
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=98.59 E-value=4.3e-08 Score=77.58 Aligned_cols=69 Identities=30% Similarity=0.590 Sum_probs=62.8
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCcccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPIL 505 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~ 505 (507)
+.+|..|||+++|++..+.+... .++++.. ++||+|..+.|.|..||++|+.||++|++.... .|+||+
T Consensus 52 g~i~~~~~~~i~dP~~~~tIt~~-~~~s~~~-~tpyeG~~~~G~~~~Ti~rG~~V~~~g~~~~~~g~G~~l~ 121 (127)
T d1nfga1 52 IAVGSDADIVLWDPEAEMVIEQT-AMHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLK 121 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEECCGG-GSCSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCC
T ss_pred ecccccccceeeccccceEEehH-HhccccC-cCCCcCCEEeeEEEEEEECCEEEEECCEEeecCCCCeEcc
Confidence 46788999999999998988888 8888998 999999999999999999999999999998655 799984
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.57 E-value=6.9e-08 Score=76.67 Aligned_cols=69 Identities=25% Similarity=0.524 Sum_probs=62.5
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccC-CCCCcccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP-AACGSPIL 505 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~-~~~~~~~~ 505 (507)
+.+|.+||+.++|++..+.+... .+.++.. ++||+|..+.+.|..|+++|++||++|+++. ...|+||+
T Consensus 53 ~~v~~~~~~~~~dp~~~~~i~~~-~~~s~~~-~tpf~G~~~~g~v~~Ti~rG~~V~~dg~~~~~~G~G~fv~ 122 (128)
T d1k1da1 53 IVVGSDADLVIFDPNIERVISAE-THHMAVD-YNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYLK 122 (128)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTT-TCCSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCC
T ss_pred eecccccceEEeeccccEEEecc-ccccccc-eeeecCcEEEEEEEEEEECCEEEEECCEEEecCCCCeEec
Confidence 46789999999999999988888 8899999 9999999999999999999999999999974 44899984
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.52 E-value=6.5e-08 Score=74.79 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=47.5
Q ss_pred cceEEEEecEEECCCC-c-eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecce
Q 010547 42 YNQYWLTSKRIVTPKG-V-ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL 100 (507)
Q Consensus 42 ~~~~~i~n~~i~~~~~-~-~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGf 100 (507)
|+.++|+||+|+|+.. + ...+|+|++|+|++|++..+.+ .+++||+.|+++.||+
T Consensus 1 m~~~likng~viDp~~g~~~~~DllI~~GkI~~I~~~i~~~----~a~viD~~g~~~~~~l 57 (112)
T d1xrta1 1 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVP----EAEIIDAKGLIVCPTL 57 (112)
T ss_dssp CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCCCS----SEEEEECTTSEEEECC
T ss_pred CceeEEeCeEEECCCCCccceeeEEEECCEEEEeecCCCcc----cceEEehhccccccee
Confidence 4679999999999876 3 3789999999999999876554 5799999999999997
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=98.50 E-value=1.4e-07 Score=74.77 Aligned_cols=69 Identities=29% Similarity=0.544 Sum_probs=63.3
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCcccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPIL 505 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~ 505 (507)
+.+|..|||+++|++..+.+... .+++... ++||+|+.+.|.|..|+++|+.||++|+++... .|+|++
T Consensus 52 g~i~~~~~~~i~dp~~~~tI~~~-~~~s~~~-~tpfeG~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G~fi~ 121 (127)
T d1ynya1 52 IAVGSDADIVIFDPHVKRTLSVE-THHMNVD-YNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIK 121 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEEECTT-TCCSSSS-CCTTTTEEEEEEEEEEEETTEEEEETTEECCCTTCCCBCC
T ss_pred ccccccchhhhhccccceEEeeh-hhhhccC-cCCcCCCEEeeEEEEEEECCEEEEECCEEeecCCCceEec
Confidence 66899999999999999999888 8888888 999999999999999999999999999998655 799983
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=98.43 E-value=2.2e-07 Score=72.88 Aligned_cols=67 Identities=21% Similarity=0.411 Sum_probs=59.8
Q ss_pred cccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCCC-CCcccc
Q 010547 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPIL 505 (507)
Q Consensus 435 I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~~-~~~~~~ 505 (507)
+-+| ||++++|++..+.+... .+++... ++||++....|.|..|+++|+.||++|+++... .|++++
T Consensus 50 v~~g--~d~~~~d~~~~~tis~~-~~~s~~~-~tpfeG~~~~G~v~~ti~rG~~v~~~g~~~~~~g~G~~l~ 117 (123)
T d1gkpa1 50 VFPG--ADLVVYDPQYRGTISVK-TQHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLR 117 (123)
T ss_dssp EEEC--CCEEEEETTCCEECCGG-GCCSSSS-CCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCC
T ss_pred EecC--cceEEEecccccccchh-hhhcccc-cccccccEEeeEEEEEEECCEEEEECCEEEecCCCCeEeC
Confidence 4456 69999999999998877 7888888 999999999999999999999999999998555 899885
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=4.4e-06 Score=75.23 Aligned_cols=245 Identities=17% Similarity=0.174 Sum_probs=126.0
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEeccccCCC-ccc
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYN 178 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 178 (507)
|||+|+|+..... .++.......+...||+.++..+ +.+ ...+...+..+.. ......++.+....... ...
T Consensus 5 ~ID~H~HLd~~~~--~~d~~~~l~~a~~~gV~~~v~~~--t~~--~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~~ 77 (259)
T d1zzma1 5 FIDTHCHFDFPPF--SGDEEASLQRAAQAGVGKIIVPA--TEA--ENFARVLALAENY-QPLYAALGLHPGMLEKHSDVS 77 (259)
T ss_dssp EEESCBCTTSTTT--TTCHHHHHHHHHHTTEEEEEEEC--CSG--GGHHHHHHHHHHC-TTEEEEECCCGGGGGGCCHHH
T ss_pred EEEeCcCCCChhh--CcCHHHHHHHHHHcCCCEEEEec--CCH--HHHHHHHHHHhcC-ccccccccCCchHhhccchhh
Confidence 7999999965332 34567778888999999887543 222 2233333332221 22333333333332222 122
Q ss_pred HHHHHHHHH---cCCcEEEEcccCCCCCCCCC-CC----HHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCc
Q 010547 179 ASALEALLN---AGVLGLKSFMCPSGINDFPM-TN----ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250 (507)
Q Consensus 179 ~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~-~~----~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~ 250 (507)
.+....... ..+.+++.. +. +..+. .+ .+.+++.++.|++++.|+.+|+....
T Consensus 78 ~~~~~~~~~~~~~~~v~iGEi-Gl---d~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~a~--------------- 138 (259)
T d1zzma1 78 LEQLQQALERRPAKVVAVGEI-GL---DLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--------------- 138 (259)
T ss_dssp HHHHHHHHHHCCSSEEEEEEE-EE---ECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH---------------
T ss_pred HHHHHHHHhccCcccceeccc-cc---cccccchhhhHHHHHHHHHHHHHHHhccchhhhhHHHH---------------
Confidence 233333332 222232221 00 11111 11 24577889999999999999995432
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccC
Q 010547 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330 (507)
Q Consensus 251 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~ 330 (507)
.+++++..+.. ..+..+.|+.+ ++.+.++.+.+.|..+++.... ...
T Consensus 139 -------------------~~~~~~l~~~~------~~~~~i~H~f~--g~~~~~~~~l~~g~~~si~~~~---~~~--- 185 (259)
T d1zzma1 139 -------------------DKLAMHLKRHD------LPRTGVVHGFS--GSLQQAERFVQLGYKIGVGGTI---TYP--- 185 (259)
T ss_dssp -------------------HHHHHHHHHHC------CTTCEEETTCC--SCHHHHHHHHHTTCEEEECGGG---GCT---
T ss_pred -------------------HHHHHhhhccc------cccceeeeccc--CCHHHHHHHHHcCCCccccccc---ccc---
Confidence 23334444431 12234688887 6778888888888766553111 000
Q ss_pred CCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcC
Q 010547 331 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYG 409 (507)
Q Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~g 409 (507)
.......+.+.+.-. .+.+.||.+ +..... +... ..-...+...... +.-.+
T Consensus 186 ---------------~~~~~~~~v~~iPld-riL~ETD~P-~~~~~~------~~~~----~~~P~~~~~~~~~iA~i~~ 238 (259)
T d1zzma1 186 ---------------RASKTRDVIAKLPLA-SLLLETDAP-DMPLNG------FQGQ----PNRPEQAARVFAVLCELRR 238 (259)
T ss_dssp ---------------TTCSHHHHHHHSCGG-GEEECCCBT-SSCCTT------CTTS----CCCGGGHHHHHHHHHHHCS
T ss_pred ---------------chHHHHHHHHhhccc-eEEEecCCC-CcCCCc------CCCC----CCchHHHHHHHHHHHHHhC
Confidence 011111222222222 457999954 221110 0000 0001113333333 45568
Q ss_pred CCHHHHHHHHhhchhHHhCCC
Q 010547 410 VTLEQLASWWSERPAKLAGQV 430 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl~ 430 (507)
++.+++.+..+.|.-+++|++
T Consensus 239 ~~~~ev~~~~~~N~~rlf~lp 259 (259)
T d1zzma1 239 EPADEIAQALLNNTYTLFNVP 259 (259)
T ss_dssp SCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999873
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.2e-05 Score=72.21 Aligned_cols=250 Identities=13% Similarity=0.064 Sum_probs=132.1
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhc--CceeeEEEeccccCCCc-
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPENA- 176 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 176 (507)
+||+|+|+....+ .++.......+.+.||+.++..+ .+.+......+.+.. ..+..++.|........
T Consensus 1 liD~H~HL~~~~f--~~d~~~vl~~a~~~gV~~ii~~~-------~~~~~~~~~~~la~~~~~v~~a~GiHP~~~~~~~~ 71 (260)
T d1xwya1 1 MFDIGVNLTSSQF--AKDRDDVVACAFDAGVNGLLITG-------TNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQA 71 (260)
T ss_dssp CEEEEECTTSGGG--TTTHHHHHHHHHHTTCCEEEECC-------CSHHHHHHHHHHHHHSTTEEEEECCCGGGGGGCCH
T ss_pred CEEEEeCCCChHH--hCCHHHHHHHHHHCCCCEEEEec-------CCHHHHHHHHHHHHhCCcccchhhcCcchhhhhhh
Confidence 6999999986433 24577888899999999999653 345555555554443 22233333332222221
Q ss_pred ccHHHHHHHHHc-CCcEEEEc-ccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccc
Q 010547 177 YNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 254 (507)
Q Consensus 177 ~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 254 (507)
...+.+.+.... ....++.. +.+.-.........+.+.+.++.|.++++|+.+|+....
T Consensus 72 ~~~~~~~~~~~~~~~vaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~------------------- 132 (260)
T d1xwya1 72 ATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAH------------------- 132 (260)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-------------------
T ss_pred hHHHHHHHHHhcchhhhhhhhcccccccccchHHHHHHHHHHHHHHHhcCCceEeeeccch-------------------
Confidence 222333444332 22233221 110000000001124467788999999999999995432
Q ss_pred cccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCC
Q 010547 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334 (507)
Q Consensus 255 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 334 (507)
.+++++.++... ...-.+.|+.+ ++.+.++.+.+.|..+++.....
T Consensus 133 ---------------~~~~~il~~~~~-----~~~~~v~H~f~--g~~~~~~~~~~~g~~~s~~g~~~------------ 178 (260)
T d1xwya1 133 ---------------ERFMTLLEPWLD-----KLPGAVLHCFT--GTREEMQACVAHGIYIGITGWVC------------ 178 (260)
T ss_dssp ---------------HHHHHHHGGGGG-----GSSCEEECSCC--CCHHHHHHHHHTTCEEEECGGGG------------
T ss_pred ---------------hHHHHHHHHhhc-----cCcccchhhhh--ccHHHHHHhhhhccccccCcccc------------
Confidence 345555554311 11224578877 66778888888887766532110
Q ss_pred CCceeEcCCCCChhhHHHHHHHHhc-C-CeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCC
Q 010547 335 DTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVT 411 (507)
Q Consensus 335 ~~~~~~~p~~~~~~~~~~~~~~l~~-G-~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls 411 (507)
.......+.+.+.. . -...+-||.+-..+.. +.....+-..--..+...... +.-.|++
T Consensus 179 -----------~~~~~~~~~~~~~~iPldrlllETD~P~~~p~~-------~~~~~~~~~NeP~~l~~v~~~lA~~~g~~ 240 (260)
T d1xwya1 179 -----------DERRGLELRELLPLIPAEKLLIETDAPYLLPRD-------LTPKPSSRRNEPAHLPHILQRIAHWRGED 240 (260)
T ss_dssp -----------CTTTSHHHHHHGGGSCGGGEEECCCTTSCCCTT-------CTTCCCSSCCCGGGHHHHHHHHHHHHTCC
T ss_pred -----------chhhHHHHHHHHHhhhhhheeeecCCCCCCCcc-------ccccccCCCCChHHHHHHHHHHHHHhCcC
Confidence 00001122233322 1 2467999964322111 000000100111124444443 3456899
Q ss_pred HHHHHHHHhhchhHHhCC
Q 010547 412 LEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 412 ~~~al~~~T~n~A~~lgl 429 (507)
++++.+.++.|.-+.+|+
T Consensus 241 ~~ev~~~~~~N~~~~f~l 258 (260)
T d1xwya1 241 AAWLAATTDANVKTLFGI 258 (260)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999999999987
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=98.33 E-value=6.2e-06 Score=74.17 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=131.7
Q ss_pred eeecccccCCCCCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcC--ceeeEEEeccccCCC-c
Q 010547 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPEN-A 176 (507)
Q Consensus 100 fID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~ 176 (507)
+||+|+|+..... .++.......+.+.||+.++..+ .+.+......+.+... .+..++.+....... .
T Consensus 5 lIDsH~HLd~~~~--~~d~~~vi~~a~~~gV~~ii~~~-------~~~~~~~~~~~la~~~~~i~~a~GiHP~~~~~~~~ 75 (260)
T d1j6oa_ 5 MVDTHAHLHFHQF--DDDRNAVISSFEENNIEFVVNVG-------VNLEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPE 75 (260)
T ss_dssp EEEEEECTTSGGG--TTTHHHHHHTTTTTTEEEEEEEC-------SSHHHHHHHHHHHTTCTTEEEEECCCGGGGGGCCT
T ss_pred cEEeccCCCChhh--CcCHHHHHHHHHHCCCCEEEEec-------CCHHHHHHHHHHHHhccccccccccChhhcccccc
Confidence 7999999975432 24566777788899999988553 2355555555544432 233333333322222 2
Q ss_pred ccHHHHHHHHHcC-CcEEEEc-ccCCCCCCCCC--CCHHHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccc
Q 010547 177 YNASALEALLNAG-VLGLKSF-MCPSGINDFPM--TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252 (507)
Q Consensus 177 ~~~~~~~~~~~~g-~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
+..+.++.+.+.. ..+++.. +.+. ..... ...+.+.+.++.|+++++|+.+|+....
T Consensus 76 ~~~~~l~~~~~~~~vvaIGEiGLD~~--~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~a~----------------- 136 (260)
T d1j6oa_ 76 DFIEHLEKFAKDEKVVAIGETGLDFF--RNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY----------------- 136 (260)
T ss_dssp THHHHHHHHTTSTTEEEEEEEEEETT--TCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-----------------
T ss_pred hhhhhhHHHHhhCCeeeEeecccccc--ccccHHHHHHHHHHHHHHHHHhcCcceEEeeccch-----------------
Confidence 3345556655432 2233321 1110 00001 1224588899999999999999995432
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCC
Q 010547 253 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332 (507)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~ 332 (507)
..+++++++... ...+ .+.|+.+ ++.+.++.+.+.|..+++.....
T Consensus 137 -----------------~~~~~il~~~~~----~~~~-~i~H~fs--G~~~~~~~~l~~g~~is~~g~~~---------- 182 (260)
T d1j6oa_ 137 -----------------SEAYEILRTESL----PEKR-GVIHAFS--SDYEWAKKFIDLGFLLGIGGPVT---------- 182 (260)
T ss_dssp -----------------HHHHHHHHHSCC----CSSC-EEETTCC--SCHHHHHHHHHHTEEEEECGGGG----------
T ss_pred -----------------HHHHHHHHhhcC----CCCC-eeeeccc--cCHHHHHHHHhCCCceeeccccc----------
Confidence 345555554311 1122 4678888 67778888888887665531110
Q ss_pred CCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCCCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCC
Q 010547 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVT 411 (507)
Q Consensus 333 ~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls 411 (507)
.........+.+.+..+ .+.+-||.+-..... ..+ . ..--..+...... +.-.+++
T Consensus 183 -----------~~~~~~~~~~v~~iPld-rlllETD~P~l~p~~-~~~--~--------~n~P~~l~~v~~~iA~~~~~~ 239 (260)
T d1j6oa_ 183 -----------YPKNEALREVVKRVGLE-YIVLETDCPFLPPQP-FRG--K--------RNEPKYLKYVVETISQVLGVP 239 (260)
T ss_dssp -----------CTTCHHHHHHHHHHCGG-GEEECCCBTSCCCGG-GTT--S--------CCCGGGHHHHHHHHHHHHTSC
T ss_pred -----------cchHHHHHHHHHhcccc-eEEEecCCCCCCCcc-cCC--C--------CCChHHHHHHHHHHHHHhCcC
Confidence 00111222233333222 456899954222111 000 0 0001113333433 4456899
Q ss_pred HHHHHHHHhhchhHHhCC
Q 010547 412 LEQLASWWSERPAKLAGQ 429 (507)
Q Consensus 412 ~~~al~~~T~n~A~~lgl 429 (507)
.+++.+..+.|.-++++.
T Consensus 240 ~~ev~~~~~~N~~rlF~~ 257 (260)
T d1j6oa_ 240 EAKVDEATTENARRIFLE 257 (260)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999888763
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=1.1e-08 Score=77.96 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCHHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEE
Q 010547 410 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 488 (507)
Q Consensus 410 ls~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~ 488 (507)
+.+++.+...|.++++.+++ .+.++|++||.|||++||.+.+..+ .+..... .++.||++||.
T Consensus 38 vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~~~~l----~Y~~g~~------------~~~~v~~~G~~ 101 (103)
T d2puza1 38 AGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIERPAEL----VYRIGFN------------PLHARIFKGQK 101 (103)
T ss_dssp EEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSSTTHH----HHCBSCC------------CEEEEEETTEE
T ss_pred cChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCCHHHH----HHhhcCC------------ChhEEEECCEE
Confidence 45566677778899999999 6679999999999999998765443 3333333 69999999998
Q ss_pred E
Q 010547 489 V 489 (507)
Q Consensus 489 v 489 (507)
|
T Consensus 102 v 102 (103)
T d2puza1 102 V 102 (103)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.23 E-value=1.5e-06 Score=65.80 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=55.0
Q ss_pred eEEEEecEEECCCC-------ceeeeEEEeCCEEEEeecCCCCCCCC-CCCcEEecCCCEEecceeecccccCCC
Q 010547 44 QYWLTSKRIVTPKG-------VISGAVEIKEGNIISIVSEEDWPRNS-KTGQVVDYGEAVIMPGLIDVHAHLDDP 110 (507)
Q Consensus 44 ~~~i~n~~i~~~~~-------~~~~~I~I~dG~I~~Vg~~~~~~~~~-~~~~viD~~g~~v~PGfID~H~H~~~~ 110 (507)
+.+++|++|.|+++ +++++|.|+||||..||+..+.+... ..++++|++|+++.+.--..+.+....
T Consensus 2 ~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~ 76 (103)
T d2puza1 2 TALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWD 76 (103)
T ss_dssp EEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEEC
T ss_pred cEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEc
Confidence 67999999999754 36899999999999999988776433 357899999999998887777776543
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.91 E-value=1.1e-06 Score=64.92 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=36.6
Q ss_pred hCC-CCCCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEE
Q 010547 427 AGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490 (507)
Q Consensus 427 lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~ 490 (507)
..+ .+.|+|++||.|||++||.+.+..+ ++.+... .+..||++|+.|.
T Consensus 54 ~d~~gr~~tlevGk~ADlviwd~~~~~~L----~Y~~G~n------------~i~~vi~~G~~V~ 102 (103)
T d2q09a1 54 QDMKGKLVTLRVGMLADFLVWNCGHPAEL----SYLIGVD------------QLVSRVVNGEETL 102 (103)
T ss_dssp EECTTCEEECCTTSBCCEEEESSSCTTHH----HHSCSCC------------CEEEEEETTEECC
T ss_pred hhcccceEEecCCCccCEEEEcCCCHHHh----hhhcCCC------------CceEEEECCEEee
Confidence 345 5789999999999999998876554 3333333 6999999999873
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=5.4e-05 Score=49.63 Aligned_cols=52 Identities=31% Similarity=0.468 Sum_probs=42.5
Q ss_pred EEEEecEEECC-CCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEecceeecccccC
Q 010547 45 YWLTSKRIVTP-KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108 (507)
Q Consensus 45 ~~i~n~~i~~~-~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfID~H~H~~ 108 (507)
++|.+..|+|| ++.+.|+|.+++|+|..|-+..-.+ ..++||||+|-|.|-.
T Consensus 1 M~iE~VLIVDPidGEyTGdvEf~e~kI~~I~k~ectp------------~~ilMP~f~dg~~a~~ 53 (76)
T d1o12a1 1 MIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRECIP------------RGVLMPRIAEGTRADL 53 (76)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEETTEEEEEEECCSCC------------SSEEEECCSTTSBCCE
T ss_pred CceeeEEEEcCCCCcEeeeEEecCcEEEEEEEeccCC------------CeEEcccccCCccccE
Confidence 46888899987 6678999999999999998764322 3689999999999853
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.52 E-value=6.2e-06 Score=65.36 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=48.4
Q ss_pred HHHHHHHHhhchhHHhCC-CCCCccccCCCCcEEEEcCCCceEeCC---CC--CcccCCCC---CccccCcEEeeE---E
Q 010547 412 LEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDN---DH--PVHMKHPS---ISAYLGRRLSGK---V 479 (507)
Q Consensus 412 ~~~al~~~T~n~A~~lgl-~~~G~I~~G~~ADlvvld~~~~~~~~~---~~--~~~~~~~~---~~~~~~~~~~~~---V 479 (507)
+.+.++.. .-+|+.+++ +++|.+++||.|||+|+|++....+.. .. .......+ .+.++.+.+.|. |
T Consensus 48 ~~~~l~~~-~pga~v~d~~d~lg~F~~GkEADfvVlD~~~tp~~~~r~~~~~~~~~~~~~~~~l~e~Lf~l~~lGDDR~I 126 (140)
T d2ooda1 48 PYEKIAAA-HPGVEITHIKDRIIVFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGDDRCV 126 (140)
T ss_dssp EHHHHHHH-STTCEEEEEEEEEEECCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCCGGGE
T ss_pred CHHHHhhc-CCCceEEecCCceEeccCCCeecEEEECCCCChHHHhhhhhcccccccchhhhhHHHHHHHHhhccCCCce
Confidence 44556543 557899999 889999999999999999764210000 00 00000000 111333333333 9
Q ss_pred EEEEECCEEEEec
Q 010547 480 LATISRGNLVYKE 492 (507)
Q Consensus 480 ~~v~v~G~~v~~~ 492 (507)
..|||.|+.||+.
T Consensus 127 ~~t~V~G~~v~~r 139 (140)
T d2ooda1 127 DETWVMGKRLYKK 139 (140)
T ss_dssp EEEEETTEEEEEC
T ss_pred EEEEECCEEEeec
Confidence 9999999999974
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.43 E-value=0.00012 Score=53.84 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=43.5
Q ss_pred ceEEEEecEEECCCC-------ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEe
Q 010547 43 NQYWLTSKRIVTPKG-------VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM 97 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~-------~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~ 97 (507)
.+.+.+|+++-|++. +++++|.|++|||..|+|..+.+... .....|++|+++.
T Consensus 2 cd~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~~-~~~~~d~~gr~~t 62 (103)
T d2q09a1 2 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPY-PAHWQDMKGKLVT 62 (103)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--C-CTTSEECTTCEEE
T ss_pred cceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCccc-cchhhhcccceEE
Confidence 357899999998754 46899999999999999998887554 4577899999864
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=97.01 E-value=0.03 Score=50.58 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=38.0
Q ss_pred ccHHHHHHHHH-cCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 177 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 177 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
...+++++..+ .|..|++...... +. ..+.+.+..+.+.|.+++++|.+|...
T Consensus 103 ~a~~el~r~~~~~G~~Gi~~~~~~~---~~-~~~dp~~~pi~~~~~e~~lpv~~H~~~ 156 (306)
T d2f6ka1 103 DAVKTVQQALDQDGALGVTVPTNSR---GL-YFGSPVLERVYQELDARQAIVALHPNE 156 (306)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESEET---TE-ETTCGGGHHHHHHHHTTTCEEEEECCC
T ss_pred HHHHHHHHHHhcccceEEEecCccc---cc-cCCCccchHHHHHHHHcCCceEeccCC
Confidence 35566777665 6999998753222 11 245567899999999999999999643
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=4.8e-05 Score=59.87 Aligned_cols=63 Identities=13% Similarity=0.027 Sum_probs=39.5
Q ss_pred HHhCCCCCCccccCCCCcEEEEcCCCceEeCCCCCcc----cCCCCCccccCcEEee---EEEEEEECCEEEE
Q 010547 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH----MKHPSISAYLGRRLSG---KVLATISRGNLVY 490 (507)
Q Consensus 425 ~~lgl~~~G~I~~G~~ADlvvld~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~V~~v~v~G~~v~ 490 (507)
++|+.++.|.+++||.||++++|.+..... .. .+. .... .+++..+...| .|..|||+|+.|+
T Consensus 59 ~al~~~~~g~FevGkeaD~ivID~~~~~~~-~~-~~~~~~~~~~~-~~~l~~lv~~gddr~I~~v~V~G~~Vv 128 (131)
T d2uz9a1 59 RELSHHEFFMFEVGKEFDAILINPKASDSP-ID-LFYGDFFGDIS-EAVIQKFLYLGDDRNIEEVYVGGKQVV 128 (131)
T ss_dssp EECCTTCEEECCTTSBCCEEEECTTCTTCS-CC-CCTHHHHSSST-THHHHHHHHHCCGGGEEEEEETTEEEE
T ss_pred HHhhhccccccccCccccEEEEECCCccch-hh-hhccccccCcH-HHHHHHHhhcCCCCcEeEEEECCEEeC
Confidence 344557899999999999999998752110 00 000 0011 33444444433 3999999999986
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=96.69 E-value=0.0013 Score=53.55 Aligned_cols=67 Identities=28% Similarity=0.462 Sum_probs=53.4
Q ss_pred ccC-CCCcEEEEcCCCceE--------eCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEecCcccCC-CCCccc
Q 010547 436 AIG-NHADLVVWEPEAEFE--------LDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPI 504 (507)
Q Consensus 436 ~~G-~~ADlvvld~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~g~~~~~-~~~~~~ 504 (507)
-+| -+||+.+++++.... +... .+.+... +.+|++....|.+..|+++|+.||++|++... ..|+|+
T Consensus 57 ~pg~~d~Hih~~~~~~~~~~~~~~~~tIs~~-~~~~~~~-~t~~eg~~~~G~~~~ti~rG~~v~~~g~~~~~~g~G~fi 133 (156)
T d2fvka1 57 LPGVSDADLVIWYPDDSKKEYNSKPKLITNK-LMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYL 133 (156)
T ss_dssp CTTTSBCCEEEECCSSCCCCCTTSCSBCCTG-GGCSSSS-CCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBC
T ss_pred cccccccceEEEeeccccccccccceEEehh-hcccccc-cccceeEEEccceEEEEECCEEEEECCEEEecCCCCccc
Confidence 456 789999999875322 3333 4556677 99999999999999999999999999999844 478887
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=96.54 E-value=0.15 Score=46.12 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=40.0
Q ss_pred ccHHHHHHHHH-cCCcEEEEcccCCCCC--CCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 177 YNASALEALLN-AGVLGLKSFMCPSGIN--DFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 177 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
...+++++..+ .|..|++......... ..+..+++.+..+.+.+.+++++|.+|+..
T Consensus 108 ~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~iH~~~ 167 (325)
T d2dvta1 108 AATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN 167 (325)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred hhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEEEecCC
Confidence 35567777654 5888888754322211 123467778999999999999999999754
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=96.52 E-value=0.068 Score=46.20 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=65.5
Q ss_pred eeecccccCCC----------CCCCCCChhHHHHHHHhCCceEEEeCCCCCCCCCCCHHHHHHHHHHHhcCceeeEEEec
Q 010547 100 LIDVHAHLDDP----------GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169 (507)
Q Consensus 100 fID~H~H~~~~----------~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (507)
-||+|+|+... ..............+-++||+..+-.. ........+......+.-.... .. .+
T Consensus 5 ~ID~H~Hl~~~~~~~~~~~~~~~~~~~~~e~ll~~m~~~gI~~~vl~~--~~~~~~~n~~~~~~~~~~~~~~-~~---~~ 78 (271)
T d2ffia1 5 AIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQ--PSFLGTDNRYLLSALQTVPGQL-RG---VV 78 (271)
T ss_dssp CEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBC--CGGGTTCCHHHHHHHHHSTTTB-CC---BB
T ss_pred EEeeeecccCCccccccccCCCCCCCCCHHHHHHHHHHcCCCEEEEEC--CCcccchhHHHHHHHHhhcCce-EE---EE
Confidence 49999998431 111112356677788899999876442 1112222333333333222221 11 11
Q ss_pred cccCCCcccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 010547 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 232 (507)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~ 232 (507)
.... ....+..+++...+..++...... .......+.......+.+.+++.++..|..
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (271)
T d2ffia1 79 MLER--DVEQATLAEMARLGVRGVRLNLMG---QDMPDLTGAQWRPLLERIGEQGWHVELHRQ 136 (271)
T ss_dssp CCCS--SCCHHHHHHHHTTTCCEEECCCSS---SCCCCTTSTTTHHHHHHHHHHTCEEEECSC
T ss_pred EEec--ccchHHHHHHHHhhhccceecccc---ccCCCcccHhHHHHHHHHHHhCCCcccccC
Confidence 1111 223345556666677676654322 112234556678888889999999999974
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.27 E-value=0.0013 Score=47.98 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=39.8
Q ss_pred hhchhHHhCCCC----CCccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeE----EEEEEECCEEEEe
Q 010547 420 SERPAKLAGQVS----KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK----VLATISRGNLVYK 491 (507)
Q Consensus 420 T~n~A~~lgl~~----~G~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----V~~v~v~G~~v~~ 491 (507)
|..+++.+.|.. .|+|++|+.||+.||+..+-... +.--.+..+.++ +..++++|+ +|+
T Consensus 34 ~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~------------~~Ds~G~~~~g~~~L~P~~tI~~G~-vyd 100 (101)
T d2icsa1 34 SGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKT------------LTDSNGLTRVAKEQIRPIKTIIGGQ-IYD 100 (101)
T ss_dssp CCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEE------------EECTTSCEEEEEEEEEEEEEEETTE-EEE
T ss_pred cccchheEecCCceeeeeEecCCCeeeEEEEEEecCceE------------EEeCCCCEEEeeEEEeEEEEEECCE-Eec
Confidence 457888888832 59999999999999996542211 111122344333 788999999 665
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=96.11 E-value=0.12 Score=46.89 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 010547 177 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 233 (507)
Q Consensus 177 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~ 233 (507)
...+++++..+.|..+++...... .....+..+..+.+.+.++++++.+|...
T Consensus 126 ~a~~el~r~~~~g~~g~~l~~~~~----~~~~~d~~~~p~~~~~~e~~~pv~iH~~~ 178 (331)
T d2hbva1 126 LACKEASRAVAAGHLGIQIGNHLG----DKDLDDATLEAFLTHCANEDIPILVHPWD 178 (331)
T ss_dssp HHHHHHHHHHHHTCCCEEEESCBT----TBCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhHHHHhhhhcceeeeeccccc----CcccccchhhHHHHHHhccCCceEEecCC
Confidence 456778888889999998743221 12467788999999999999999999743
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.07 E-value=0.0037 Score=45.50 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=37.8
Q ss_pred ceEEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCC
Q 010547 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEA 94 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~ 94 (507)
.+++|+|++.+++. ..+|.|.+|||.+||+..+.+ +.+++|+.|+
T Consensus 2 ~d~~i~~~~~~~g~---~~diai~~~ki~a~~~~~~~~----a~~~~~L~~~ 46 (101)
T d2icsa1 2 YDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATISGS----AKETIHLEPG 46 (101)
T ss_dssp EEEEEEEEECTTSC---EEEEEEETTEEEEEESCCCCC----EEEEEECCTT
T ss_pred ccEEEEcceecCCC---eEEEEeccCeeeeeccccccc----chheEecCCc
Confidence 47899999999876 678999999999999876543 5789999874
|
| >d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Cytosine deaminase domain: Cytosine deaminase species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0075 Score=43.90 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=40.8
Q ss_pred EEEEecEEECCCCceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEeccee
Q 010547 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101 (507)
Q Consensus 45 ~~i~n~~i~~~~~~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfI 101 (507)
..|+|+++-.-++ --+|.|+||+|..|.+...... .....+|+.|.+++|-+|
T Consensus 3 ~~I~NarL~gr~G--L~~I~I~~G~i~~I~pq~~~~~--~~~d~lDa~GgL~~p~~i 55 (103)
T d1ra0a1 3 QTIINARLPGEEG--LWQIHLQDGKISAIDAQSGVMP--ITENSLDAEQGLVIPLII 55 (103)
T ss_dssp CEEEEEBCTTCCS--EEEEEEETTEEEEEEEESSCCC--CCTTEEECTTCEEESEEE
T ss_pred ceEEEEEeCCCCc--EEEEEecCCEEeeeecCCcccc--CCCcceeccCCcccCcEE
Confidence 3688999988776 3468999999999998754321 256799999999999443
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.074 Score=48.88 Aligned_cols=139 Identities=15% Similarity=0.092 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceE
Q 010547 211 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 290 (507)
Q Consensus 211 ~~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~ 290 (507)
..+..+++.|++.|.++.+|+.+.. ..+.+...+..+. . -
T Consensus 192 ~~~~~~f~~ar~~gl~~t~HaGE~~-----------------------------~~~~i~~ai~~l~----------~-~ 231 (349)
T d1a4ma_ 192 PGHVEAYEGAVKNGIHRTVHAGEVG-----------------------------SPEVVREAVDILK----------T-E 231 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSS-----------------------------CHHHHHHHHHTSC----------C-S
T ss_pred HHHHHHHHHHHHcCCceeeccCCCC-----------------------------ChHHHHHHHHHhC----------C-c
Confidence 4577888999999999999995432 1123333333221 1 2
Q ss_pred EEEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCC
Q 010547 291 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 370 (507)
Q Consensus 291 ~~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~ 370 (507)
.+.|........+.++.++++++.+. +||..-.... ..+.++ .-++..++..|++++|+||..
T Consensus 232 RIGHG~~l~~d~~l~~~~~~~~I~lE--vCptSN~~~~-----------~~~~~~----~HP~~~~~~~gv~v~i~TDDp 294 (349)
T d1a4ma_ 232 RVGHGYHTIEDEALYNRLLKENMHFE--VCPWSSYLTG-----------AWDPKT----THAVVRFKNDKANYSLNTDDP 294 (349)
T ss_dssp EEEECGGGGGSHHHHHHHHHTTCEEE--ECHHHHHHSS-----------SSCTTS----CCHHHHHHHTTCCEEECCBCT
T ss_pred ccCCceecccCHHHHHHhhhcCceEE--Eccccccccc-----------ccCchh----hHHHHHHHHCCCeEEEeCCCc
Confidence 45666543255667888888887654 4774322110 011111 124678889999999999976
Q ss_pred CCChhhhccccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhC
Q 010547 371 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAG 428 (507)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~gls~~~al~~~T~n~A~~lg 428 (507)
...... +...+.. ....+++.+++.++ ..|+-++-.
T Consensus 295 ~~f~t~---------------------Ls~Ey~~a~~~~~l~~~~l~~l-~~nsi~~sf 331 (349)
T d1a4ma_ 295 LIFKST---------------------LDTDYQMTKKDMGFTEEEFKRL-NINAAKSSF 331 (349)
T ss_dssp TTTTCC---------------------HHHHHHHHHHTTTCCHHHHHHH-HHHHHHTSS
T ss_pred cccCCC---------------------HHHHHHHHHHHhCcCHHHHHHH-HHHHHHHhC
Confidence 432111 3333333 45569999886654 445555433
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=95.14 E-value=0.061 Score=49.59 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCcEEEecCCcccchhhhhcccCcCCccccccccCCCChhHHHHHHHHHHHHHHhhccCCCCCCceEE
Q 010547 212 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 291 (507)
Q Consensus 212 ~l~~~~~~a~~~~~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~ 291 (507)
....+++.|++.|.++.+|+.+... .+ ....+...+..+ |. -.
T Consensus 202 ~~~~~f~~ar~~gl~it~HaGE~~~-----------------------~~---~~~~i~~ai~~l----------~~-~R 244 (357)
T d2amxa1 202 DHKDVYHSVRDHGLHLTVHAGEDAT-----------------------LP---NLNTLYTAINIL----------NV-ER 244 (357)
T ss_dssp GGHHHHHHHHHTTCEEEEEESCCTT-----------------------CS---SSHHHHHHHHTS----------CC-SE
T ss_pred hhHHHHHHHHhcCCcccccccccCC-----------------------CC---ChHHHHHHHHcc----------CC-cc
Confidence 3567889999999999999954221 00 111223333221 11 24
Q ss_pred EEecCChhHHHHHHHHHHhCCCCEEEecccccccccccCCCCCCCceeEcCCCCChhhHHHHHHHHhcCCeeEEeCCCCC
Q 010547 292 IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371 (507)
Q Consensus 292 ~~h~~~~~~~~~~i~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~lgtD~~~ 371 (507)
+.|........++++.++++++.+. +||..-.... .+ +.+. .-++.++++.|++++++||...
T Consensus 245 IgHGv~~~~d~~l~~~l~~~~I~le--iCPtSN~~~~-~~----------~~~~----~HP~~~l~~~Gv~v~l~TDDp~ 307 (357)
T d2amxa1 245 IGHGIRVSESDELIELVKKKDILLE--VCPISNLLLN-NV----------KSMD----THPIRKLYDAGVKVSVNSDDPG 307 (357)
T ss_dssp EEECGGGGGCHHHHHHHHHHTCEEE--ECHHHHHHTT-SS----------SCST----TCTHHHHHHTTCEEEECCBCHH
T ss_pred cccchheecCHHHHHHHHHhCceEE--ECCcchhhhc-cC----------CCcc----cCHHHHHHHCCCeEEEeCCCch
Confidence 5666644345567777778886654 5774322110 00 1111 1146788899999999999652
Q ss_pred CChhhhccccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHh
Q 010547 372 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLA 427 (507)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~gls~~~al~~~T~n~A~~l 427 (507)
... ..+...+. .+...++|.++..+ .+.|+-++-
T Consensus 308 ~f~---------------------t~ls~ey~~~~~~~~ls~~el~~-l~~nsi~~s 342 (357)
T d2amxa1 308 MFL---------------------SNINDNYEKLYIHLNFTLEEFMI-MNNWAFEKS 342 (357)
T ss_dssp HHT---------------------CCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHC
T ss_pred hhC---------------------CCHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHh
Confidence 210 00332232 34567999998555 566665543
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=93.74 E-value=0.056 Score=35.11 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=27.6
Q ss_pred ccccCCCCcEEEEcCCCceEeCCCCCcccCCCCCccccCcEEeeEEEEEEECCEEEEec
Q 010547 434 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492 (507)
Q Consensus 434 ~I~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~v~G~~v~~~ 492 (507)
.+..|+.||||++|.+- .|..++..|.+||+.
T Consensus 44 ~f~dg~~a~~Vlld~~l---------------------------~v~~tv~~g~~v~~~ 75 (76)
T d1o12a1 44 RIAEGTRADLVLLDEDL---------------------------NVVMTIKEGEVVFRS 75 (76)
T ss_dssp CCSTTSBCCEEEECTTC---------------------------CEEEEEETTEEEEEC
T ss_pred cccCCccccEEEEcCCc---------------------------eEEEEEeeccEEEec
Confidence 57889999999999652 689999999999974
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=91.29 E-value=0.016 Score=45.20 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=30.5
Q ss_pred eeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEE
Q 010547 59 ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI 96 (507)
Q Consensus 59 ~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v 96 (507)
.+|.++|+||+|+++|+.......+++++++|..++++
T Consensus 32 ~DG~llie~G~I~a~G~~~~l~~~~pga~v~d~~d~lg 69 (140)
T d2ooda1 32 QDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRII 69 (140)
T ss_dssp EEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEE
T ss_pred cCcEEEEeCCEEEEecCHHHHhhcCCCceEEecCCceE
Confidence 47899999999999998765543344889999988775
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=89.65 E-value=0.39 Score=34.10 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=48.6
Q ss_pred ceEEEEecEEECCCC--ceeeeEEEeCCEEEEeecCCCCCCCCCCCcEEecCCCEEeccee---ecccccCCC
Q 010547 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI---DVHAHLDDP 110 (507)
Q Consensus 43 ~~~~i~n~~i~~~~~--~~~~~I~I~dG~I~~Vg~~~~~~~~~~~~~viD~~g~~v~PGfI---D~H~H~~~~ 110 (507)
.+++|+--.+++... ....++.|++|+|.+++.... .+++++..++++.+|++- ++|.++..+
T Consensus 2 ~d~~~~pk~yL~~~~g~li~a~l~v~~G~i~ai~~~t~-----~~A~il~l~d~illG~I~~Gk~ADlvlvdg 69 (95)
T d3be7a1 2 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINT-----KDATVISIPDLILIPQIKEGFDADIVGVIE 69 (95)
T ss_dssp CCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECCCC-----SSSEEEEEEEEEEEESCCTTSBCCEEEESS
T ss_pred CceEecCcceeccccchhhhhhhhhhcCcHHHHHhhcc-----ChHHhcCCCCccccceeccCceeeEEEEcC
Confidence 467888888887543 568999999999999986432 268999999988777775 777777654
|
| >d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 4-oxalomesaconate hydratase LigJ species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.79 E-value=0.85 Score=40.87 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=40.3
Q ss_pred ccHHHHHHHH-HcCCcEEEEcccCCCC-CCCCCCCHHHHHHHHHHHHhcCCcEEEecCCc
Q 010547 177 YNASALEALL-NAGVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEME 234 (507)
Q Consensus 177 ~~~~~~~~~~-~~g~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~~~~v~~H~~~~ 234 (507)
....++++.. ..|..+++......+. ...+..++..+..+.+.+.++++++.+|....
T Consensus 123 ~a~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~glpv~~H~~~~ 182 (342)
T d2gwga1 123 TCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS 182 (342)
T ss_dssp GGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC-
T ss_pred HHHHHHhhhHhhccceEEEEeccccccccCCCCCCCHHHHHHHHHhhcCCCeEEEccCCC
Confidence 4455666554 5788899886433221 22334677889999999999999999998543
|